Query 029379
Match_columns 194
No_of_seqs 181 out of 1286
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 19:38:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029379.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029379hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r0p_A L-PSP putative endoribo 100.0 1.3E-38 4.5E-43 244.3 15.7 124 64-191 4-127 (127)
2 3l7q_A Putative translation in 100.0 1.2E-38 4.3E-43 243.9 15.4 123 65-191 2-124 (125)
3 2dyy_A UPF0076 protein PH0854; 100.0 1.8E-38 6.3E-43 243.2 14.9 124 65-192 3-126 (126)
4 3v4d_A Aminoacrylate peracid r 100.0 3.7E-38 1.3E-42 244.1 16.1 126 64-193 9-134 (134)
5 1qah_A Perchloric acid soluble 100.0 4.2E-38 1.4E-42 244.4 15.9 125 65-193 6-130 (136)
6 3quw_A Protein MMF1; chorismat 100.0 4.4E-38 1.5E-42 249.3 15.9 125 64-193 29-153 (153)
7 2b33_A Protein synthesis inhib 100.0 4.6E-38 1.6E-42 245.7 15.4 127 63-193 13-139 (140)
8 1jd1_A Hypothetical 13.9 kDa p 100.0 5.6E-38 1.9E-42 241.5 15.6 125 64-193 5-129 (129)
9 1x25_A Hypothetical UPF0076 pr 100.0 4.8E-38 1.6E-42 241.6 15.1 124 65-192 5-128 (128)
10 3k0t_A Endoribonuclease L-PSP, 100.0 3.8E-38 1.3E-42 247.0 14.7 133 54-191 9-142 (143)
11 2cvl_A TTHA0137, protein trans 100.0 8.8E-38 3E-42 238.8 16.0 122 66-192 3-124 (124)
12 1qd9_A Purine regulatory prote 100.0 1.5E-37 5.1E-42 237.6 15.3 122 66-192 3-124 (124)
13 3m1x_A Putative endoribonuclea 100.0 1.2E-37 4.1E-42 245.4 14.1 124 64-191 25-148 (148)
14 1qu9_A YJGF protein; structura 100.0 1.2E-37 4.2E-42 239.1 12.7 123 65-192 3-128 (128)
15 2cwj_A Putative endonuclease; 100.0 1.5E-37 5.3E-42 237.1 11.6 120 70-193 2-121 (123)
16 1xrg_A Putative translation in 100.0 7.1E-37 2.4E-41 243.0 14.9 123 65-191 34-156 (156)
17 3vcz_A Endoribonuclease L-PSP; 100.0 4.3E-37 1.5E-41 243.5 12.1 125 63-192 25-153 (153)
18 3lme_A Possible translation in 100.0 4.1E-36 1.4E-40 233.8 13.3 123 65-192 4-129 (138)
19 3lyb_A Putative endoribonuclea 100.0 1E-35 3.4E-40 238.3 13.9 121 69-193 4-151 (165)
20 1pf5_A Hypothetical protein YJ 100.0 5.4E-35 1.9E-39 225.2 16.2 122 65-193 5-130 (131)
21 2otm_A Hypothetical protein; s 100.0 1.4E-35 4.7E-40 235.0 10.8 137 55-191 2-154 (154)
22 3d01_A Uncharacterized protein 100.0 3E-35 1E-39 235.4 9.6 139 54-192 9-164 (165)
23 3i7t_A RV2704, putative unchar 100.0 7.9E-35 2.7E-39 229.7 11.7 119 64-194 4-123 (149)
24 2ig8_A Hypothetical protein PA 100.0 2.1E-34 7.3E-39 225.3 13.7 116 73-193 14-136 (144)
25 3i3f_A Hypothetical protein; s 100.0 5.7E-34 2E-38 222.4 14.2 122 64-193 15-141 (141)
26 3kjj_A NMB1025 protein; YJGF p 100.0 3.5E-33 1.2E-37 215.0 15.1 109 75-194 16-125 (128)
27 2ewc_A Conserved hypothetical 100.0 1.1E-32 3.8E-37 211.5 13.9 113 70-193 5-122 (126)
28 3k12_A Uncharacterized protein 100.0 2.1E-32 7.2E-37 208.8 13.3 108 75-192 7-115 (122)
29 3gtz_A Putative translation in 100.0 9.3E-32 3.2E-36 205.8 14.4 104 77-192 12-117 (124)
30 1spv_A Putative polyprotein/ph 27.0 1E+02 0.0034 23.7 5.2 46 114-163 131-176 (184)
31 3q71_A Poly [ADP-ribose] polym 24.1 1.3E+02 0.0043 24.1 5.4 50 114-164 167-217 (221)
32 4gni_A Putative heat shock pro 22.5 1.2E+02 0.0042 25.4 5.3 51 114-165 321-371 (409)
33 1xhj_A Nitrogen fixation prote 21.8 1.4E+02 0.0048 20.5 4.5 27 110-136 5-31 (88)
34 1xho_A Chorismate mutase; sout 21.6 2.4E+02 0.0082 21.4 6.1 43 112-154 44-89 (148)
No 1
>3r0p_A L-PSP putative endoribonuclease; hydrolase; 1.90A {Uncultured organism} SCOP: d.79.1.0
Probab=100.00 E-value=1.3e-38 Score=244.26 Aligned_cols=124 Identities=38% Similarity=0.628 Sum_probs=119.3
Q ss_pred hhhhcCCCCCCCCCCcccEEEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEEEE
Q 029379 64 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTI 143 (194)
Q Consensus 64 ~~~i~~~~~p~~~g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tv 143 (194)
++.++++++|++.|+|||++++|+++|+|||+|+|++ +|++.++|+++|++++|+||+++|+++|++++||+|+++
T Consensus 4 ~~~i~~~~~p~~~g~ys~av~~g~~l~vSGq~~~~~~----~g~~~~~d~~~Q~~~~l~ni~~~L~~ag~~l~~vvk~~v 79 (127)
T 3r0p_A 4 KAIIHSDNAPAAIGTYSQAVKVNNTVYLSGQIPLDPV----TMQLVEGDFAVQAHQVFKNLRAVCEAAGGGLRDIVKLNV 79 (127)
T ss_dssp CEEECCTTSCCCCSSCCSEEEETTEEEEEEECSBCTT----TSSBCSSCHHHHHHHHHHHHHHHHHHTTSCGGGEEEEEE
T ss_pred ceEeCCCCCCCCCCCCCCeEEECCEEEEeccCCcCCC----CCcCCCCCHHHHHHHHHHHHHHHHHHhCCCHHHEEEEEE
Confidence 4568999999999999999999999999999999998 788877899999999999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEEEe
Q 029379 144 LLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAAL 191 (194)
Q Consensus 144 yv~d~~df~~vn~v~~~~fg~~~Part~v~V~~Lp~~~lVEIe~iA~~ 191 (194)
|++|++||+.+|++|.+||++++|+||+++|..||++++||||++|++
T Consensus 80 yl~d~~~~~~~~~v~~~~f~~~~Part~v~V~~L~~~~~VEIe~iA~~ 127 (127)
T 3r0p_A 80 YLTDLANFPIVNEVMGQYFQAPYPARAAIGINQLPRASLIEADGIMVI 127 (127)
T ss_dssp EESCGGGHHHHHHHHHHHCCSSCCEEEEEECSBCGGGCSEEEEEEEEC
T ss_pred EEcCHHHHHHHHHHHHHHcCCCCCcEEEEEcccCCCCCEEEEEEEEEC
Confidence 999999999999999999999999999999999999999999999974
No 2
>3l7q_A Putative translation initiation inhibitor, ALDR R like protein; translation initiation inhibitor regulator-like; 2.50A {Streptococcus mutans} SCOP: d.79.1.0
Probab=100.00 E-value=1.2e-38 Score=243.93 Aligned_cols=123 Identities=52% Similarity=0.801 Sum_probs=118.6
Q ss_pred hhhcCCCCCCCCCCcccEEEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEE
Q 029379 65 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTIL 144 (194)
Q Consensus 65 ~~i~~~~~p~~~g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tvy 144 (194)
+.|+++++|+|.|+|||++++|+++|+|||+|+|+. +|+++++|+++|++++|+||+++|+++|++++||+|+++|
T Consensus 2 ~~i~~~~~p~p~g~ys~av~~g~~l~vSGq~~~d~~----~g~~~~~d~~~Q~~~~l~ni~~~L~~ag~~~~~vvk~~vy 77 (125)
T 3l7q_A 2 KKIHTDKAPAAIGPYVQGKIVGNLLFASGQVPLSPE----TGQVIGTTIEEQTQQVLKNISAILTEAGTDFDHVVKTTCF 77 (125)
T ss_dssp CEECCTTSCCCCSSCBSEEEETTEEEEEEECSBCTT----TCSBCCSSHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred ceEcCCCCCCCCCCCCCEEEECCEEEEeccCCcCCC----CCCCCCcCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEE
Confidence 458899999999999999999999999999999996 6988789999999999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEEEe
Q 029379 145 LADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAAL 191 (194)
Q Consensus 145 v~d~~df~~vn~v~~~~fg~~~Part~v~V~~Lp~~~lVEIe~iA~~ 191 (194)
++|++||+.+|++|.+||++++|+||+++|..||++++||||++|++
T Consensus 78 l~d~~~~~~~n~v~~~~f~~~~Part~v~v~~L~~~~~VEIe~iA~v 124 (125)
T 3l7q_A 78 LSDIDDFVPFNEVYATAFKSDFPARSAVEVARLPKDVKIEIEVIAEL 124 (125)
T ss_dssp ESCGGGHHHHHHHHHTTCCSSCCEEEEEECSBCGGGCSEEEEEEEEC
T ss_pred EcCHHHHHHHHHHHHHHcCCCCCcEEEEEcccCCCCCEEEEEEEEEe
Confidence 99999999999999999999999999999999999999999999975
No 3
>2dyy_A UPF0076 protein PH0854; putative translation initiation inhibitor, trimer, structural genomics, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.8e-38 Score=243.16 Aligned_cols=124 Identities=47% Similarity=0.775 Sum_probs=117.9
Q ss_pred hhhcCCCCCCCCCCcccEEEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEE
Q 029379 65 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTIL 144 (194)
Q Consensus 65 ~~i~~~~~p~~~g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tvy 144 (194)
+.++++++|.+.|+|||++++|+++|+|||+|+|++ +|++.++|+++|++++|+||+++|+++|++++||+|+++|
T Consensus 3 ~~i~~~~~p~~~g~ys~av~~g~~l~vSGq~~~~~~----~g~~~~~d~~~Q~~~~l~ni~~~L~~ag~~~~~vvk~~vy 78 (126)
T 2dyy_A 3 EVIFTENAPKPIGPYSQAIKAGNFLFIAGQIPIDPK----TGEIVKGDIKDQTRQVLENIKAILEAAGYSLNDVIKVTVY 78 (126)
T ss_dssp EEECCTTSCCCCSSCBSEEEETTEEEEEEECSBCTT----TCSBCSSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEE
T ss_pred ceecCCCCCCCCCCcccEEEECCEEEEeeeCCcCCC----CCcCCCcCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEE
Confidence 457899999999999999999999999999999998 7988779999999999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEEEec
Q 029379 145 LADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALP 192 (194)
Q Consensus 145 v~d~~df~~vn~v~~~~fg~~~Part~v~V~~Lp~~~lVEIe~iA~~~ 192 (194)
++|++||+.+|++|.+||++++|+||+++|..||++++||||++|+++
T Consensus 79 l~d~~~~~~~n~~~~~~f~~~~Part~v~v~~L~~~~~VEIe~iA~~~ 126 (126)
T 2dyy_A 79 LKDMNDFAKMNEVYAEYFGESKPARVAVEVSRLPKDVLIEIEAIAYKE 126 (126)
T ss_dssp ECC-CCTTHHHHHHHHHHTTTCCEEEEEECSCCGGGCSEEEEEEEECC
T ss_pred EcCHHHHHHHHHHHHHHcCCCCCcEEEEEcccCCCCCEEEEEEEEEeC
Confidence 999999999999999999998999999999999999999999999864
No 4
>3v4d_A Aminoacrylate peracid reductase RUTC; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 1.95A {Escherichia coli O6}
Probab=100.00 E-value=3.7e-38 Score=244.08 Aligned_cols=126 Identities=31% Similarity=0.553 Sum_probs=113.8
Q ss_pred hhhhcCCCCCCCCCCcccEEEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEEEE
Q 029379 64 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTI 143 (194)
Q Consensus 64 ~~~i~~~~~p~~~g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tv 143 (194)
++.++++++|++.|+|||++++|+++|+|||+|+|++ +|.+.++|+++|++++|+||+++|+++|++++||+|+++
T Consensus 9 ~~~i~~~~~p~p~g~ys~av~~g~~l~vSGq~~~d~~----~~~~~~~d~~~Q~~~~l~nl~~~L~~aG~~l~~vvk~~v 84 (134)
T 3v4d_A 9 KSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQH----NNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSI 84 (134)
T ss_dssp CEEECCCC------CCCSEEEETTEEEEEEECCBCTT----SCBSSTTCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEE
T ss_pred ceEECCCCCCCCCCCcCCEEEECCEEEEeccCccCCC----CCEECCccHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEE
Confidence 4568999999999999999999999999999999998 677767999999999999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEEEecC
Q 029379 144 LLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALPN 193 (194)
Q Consensus 144 yv~d~~df~~vn~v~~~~fg~~~Part~v~V~~Lp~~~lVEIe~iA~~~~ 193 (194)
|++|++||+.+|++|.+||++++|+||+++|..||++++||||++|++|+
T Consensus 85 yl~d~~~f~~~n~v~~~~f~~~~Part~v~v~~l~~~~~VEIe~iA~~~~ 134 (134)
T 3v4d_A 85 FITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK 134 (134)
T ss_dssp EESCGGGHHHHHHHHHHHCCSSCCEEEEEECBCSSTTCCEEEEEEEECC-
T ss_pred EECCHHHHHHHHHHHHHHcCCCCCcEEEEEccccCCCCEEEEEEEEEeCC
Confidence 99999999999999999999999999999999889999999999999875
No 5
>1qah_A Perchloric acid soluble protein; alpha-beta structure; 1.80A {Rattus norvegicus} SCOP: d.79.1.1 PDB: 1oni_A 1nq3_A
Probab=100.00 E-value=4.2e-38 Score=244.41 Aligned_cols=125 Identities=53% Similarity=0.870 Sum_probs=120.2
Q ss_pred hhhcCCCCCCCCCCcccEEEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEE
Q 029379 65 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTIL 144 (194)
Q Consensus 65 ~~i~~~~~p~~~g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tvy 144 (194)
+.++++++|++.|+|||++++|+++|+|||+|+|++ +|++.++|+++|++++|+||+++|+++|++++||+|+++|
T Consensus 6 ~~i~~~~~p~~~g~ys~av~~g~~l~vSGq~~~d~~----~g~~~~~d~~~Q~~~~l~ni~~~L~~aG~~l~~vvk~~vy 81 (136)
T 1qah_A 6 KVISTSKAPAAIGAYSQAVLVDRTIYVSGQIGMDPS----SGQLVPGGVAEEAKQALKNLGEILKAAGCDFTNVVKTTVL 81 (136)
T ss_dssp EEECCTTSCCCSSSCCSEEEETTEEEEEEECCBCTT----TCSBCSSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEE
T ss_pred eEecCCCCCCCCCCCCCEEEECCEEEEeeECCcCCC----CCcCCCcCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEE
Confidence 458899999999999999999999999999999998 7888789999999999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEEEecC
Q 029379 145 LADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALPN 193 (194)
Q Consensus 145 v~d~~df~~vn~v~~~~fg~~~Part~v~V~~Lp~~~lVEIe~iA~~~~ 193 (194)
++|++||+.+|++|.+||++++|+||+++|..||++++||||++|++++
T Consensus 82 l~d~~d~~~~n~~~~~~f~~~~Part~v~V~~L~~~~~VEIe~iA~~~~ 130 (136)
T 1qah_A 82 LADINDFGTVNEIYKTYFQGNLPARAAYQVAALPKGSRIEIEAIAVQGP 130 (136)
T ss_dssp ESCGGGHHHHHHHHHTTCCSSCCEEEEEECSCCGGGCSEEEEEEEECSC
T ss_pred EccCccHHHHHHHHHHHcCCCCCcEEEEEcccCCCCCEEEEEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999875
No 6
>3quw_A Protein MMF1; chorismate mutase fold, intact mitochondria maintenance, mitochondrial protein, protein binding; 1.75A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-38 Score=249.26 Aligned_cols=125 Identities=42% Similarity=0.657 Sum_probs=119.7
Q ss_pred hhhhcCCCCCCCCCCcccEEEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEEEE
Q 029379 64 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTI 143 (194)
Q Consensus 64 ~~~i~~~~~p~~~g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tv 143 (194)
++.++++++|++.|+||+++++|+++|+|||+|+|++ |++.++|+++|++++|+||+++|+++|++++||+|+++
T Consensus 29 ~~~i~~~~~p~p~g~YS~av~~g~~lfvSGq~~~d~~-----g~~~~gdi~~Qt~~~l~Ni~a~L~~aG~~l~dVVkvtv 103 (153)
T 3quw_A 29 LTPVSTKLAPPAAASYSQAMKANNFVYVSGQIPYTPD-----NKPVQGSISEKAEQVFQNVKNILAESNSSLDNIVKVNV 103 (153)
T ss_dssp EEEECCTTSCCCCTTCCSEEEETTEEEEEEECSBCTT-----SCBCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEE
T ss_pred eEEEcCCCCCCCCCCcCCEEEECCEEEEeeeCCcCCC-----CCCcCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEE
Confidence 4568999999999999999999999999999999997 77778999999999999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEEEecC
Q 029379 144 LLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALPN 193 (194)
Q Consensus 144 yv~d~~df~~vn~v~~~~fg~~~Part~v~V~~Lp~~~lVEIe~iA~~~~ 193 (194)
|++|++||+++|++|.+||++++|+||+++|..||++++||||++|++|+
T Consensus 104 yl~d~~df~~~n~v~~~~f~~~~PArt~V~V~~L~~~~lVEIeaiA~~pn 153 (153)
T 3quw_A 104 FLADMKNFAEFNSVYAKHFHTHKPARSCVGVASLPLNVDLEMEVIAVEKN 153 (153)
T ss_dssp EESCGGGHHHHHHHHHHHSSSCCCEEEEEECSCCGGGCSEEEEEEEECC-
T ss_pred EECCHHHHHHHHHHHHHHcCCCCCcEEEEEcccCCCCCEEEEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999874
No 7
>2b33_A Protein synthesis inhibitor, putative; putative endoribonuclease, STRU genomics, joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: d.79.1.1
Probab=100.00 E-value=4.6e-38 Score=245.68 Aligned_cols=127 Identities=46% Similarity=0.735 Sum_probs=121.8
Q ss_pred hhhhhcCCCCCCCCCCcccEEEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEEE
Q 029379 63 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTT 142 (194)
Q Consensus 63 l~~~i~~~~~p~~~g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~t 142 (194)
+|+.++++++|.+.|+||+++++|+++|+|||+|+|++ +|++.++|+++|++++|+||+++|+++|++++||+|++
T Consensus 13 ~~~~~~~~~~p~~~g~ys~av~~g~~lfvSGq~~~d~~----tG~~~~~d~~~Qt~~~l~ni~~~L~~aG~~l~~Vvk~t 88 (140)
T 2b33_A 13 MKRFVETDKAPKAIGPYSQAVVVGNMMFVSGQIPIDPE----TGELVQGTIEEKTERVLENLKAILEAGGFSLKDVVKVT 88 (140)
T ss_dssp CCEEECCTTSCCCCSSCCSEEEETTEEEEEEECSBCTT----TCCBCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred hcceecCCCCCCCCCCcCCEEEECCEEEEEeeCCcCCC----CCccCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEE
Confidence 46678899999999999999999999999999999998 79887799999999999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEEEecC
Q 029379 143 ILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALPN 193 (194)
Q Consensus 143 vyv~d~~df~~vn~v~~~~fg~~~Part~v~V~~Lp~~~lVEIe~iA~~~~ 193 (194)
+|++|++||+.+|++|.+||++++|+||+++|..||++++||||++|++++
T Consensus 89 vyl~d~~df~~~n~v~~~~f~~~~PArt~V~V~~L~~~~lVEIe~iA~~~~ 139 (140)
T 2b33_A 89 VFTTSMDYFQRVNEVYSRYFGDHRPARSFVAVAQLPRNVEIEIEAIAVKEG 139 (140)
T ss_dssp EEESCGGGHHHHHHHHHHHHTTTCCEEEEEECSCCGGGCSEEEEEEEECCC
T ss_pred EEECCchhHHHHHHHHHHHCCCCCCcEEEEEcccCCCCCEEEEEEEEEeCC
Confidence 999999999999999999999999999999999999999999999999874
No 8
>1jd1_A Hypothetical 13.9 kDa protein in FCY2-PET117 intergenic region; translation inhibitor, structural genomics, PSI; 1.70A {Saccharomyces cerevisiae} SCOP: d.79.1.1
Probab=100.00 E-value=5.6e-38 Score=241.51 Aligned_cols=125 Identities=45% Similarity=0.722 Sum_probs=118.7
Q ss_pred hhhhcCCCCCCCCCCcccEEEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEEEE
Q 029379 64 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTI 143 (194)
Q Consensus 64 ~~~i~~~~~p~~~g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tv 143 (194)
++.++++++|++.|+|||++++|+++|+|||+|+|++ |++.++|+++|++++|+||+++|+++|++++||+|+++
T Consensus 5 ~~~i~~~~~~~~~~~ys~av~~g~~l~vSGq~~~~~~-----g~~~~g~~~~Q~~~~l~ni~~~L~~aG~~~~~vvk~~v 79 (129)
T 1jd1_A 5 LTPVICESAPAAAASYSHAMKVNNLIFLSGQIPVTPD-----NKLVEGSIADKAEQVIQNIKNVLEASNSSLDRVVKVNI 79 (129)
T ss_dssp EEEECCTTSCCCSSSCCSEEEETTEEEEEEECSBCTT-----SCBCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEE
T ss_pred ceEecCCCCCCCCCCcCCEEEECCEEEEeeeCCcCCC-----CCCcCCCHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEE
Confidence 3458899999999999999999999999999999986 77777899999999999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEEEecC
Q 029379 144 LLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALPN 193 (194)
Q Consensus 144 yv~d~~df~~vn~v~~~~fg~~~Part~v~V~~Lp~~~lVEIe~iA~~~~ 193 (194)
|++|++||+.+|++|.+||++++|+||+++|..||++++||||++|++++
T Consensus 80 yl~d~~d~~~~n~~~~~~f~~~~Part~v~v~~L~~~~~VEIe~iA~~~~ 129 (129)
T 1jd1_A 80 FLADINHFAEFNSVYAKYFNTHKPARSCVAVAALPLGVDMEMEAIAAERD 129 (129)
T ss_dssp EESCGGGHHHHHHHHHHHSSSSCCEEEEEECSBCGGGCSEEEEEEEECC-
T ss_pred EEcChHHHHHHHHHHHHHcCCCCCcEEEEEeccCCCCCEEEEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999875
No 9
>1x25_A Hypothetical UPF0076 protein ST0811; YJGF-like protein, archaea, structural genomics, UNK function; 2.00A {Sulfolobus tokodaii} SCOP: d.79.1.1
Probab=100.00 E-value=4.8e-38 Score=241.57 Aligned_cols=124 Identities=45% Similarity=0.682 Sum_probs=118.4
Q ss_pred hhhcCCCCCCCCCCcccEEEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEE
Q 029379 65 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTIL 144 (194)
Q Consensus 65 ~~i~~~~~p~~~g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tvy 144 (194)
+.++++++|.+.|+|||++++|+++|+|||+|+|++ +|++.++|+++|++++|+||+++|+++|++++||+|+++|
T Consensus 5 ~~i~~~~~p~~~g~ys~av~~g~~l~vSGq~~~~~~----~g~~~~~~~~~Q~~~~l~ni~~~L~~ag~~l~~vvk~~vy 80 (128)
T 1x25_A 5 ETVFTEKAPKPVGPYSQAIKVGNTLYVSGQIPIDPR----TNEIVKGDIKVQTRQVLDNIKEIVKAAGFSLSDVAMAFVF 80 (128)
T ss_dssp EEECCTTSCCCCSSCCSEEEETTEEEEEEECSEETT----TTEECSSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEE
T ss_pred eEecCCCCCCCCCCcCCEEEECCEEEEeeeCCcCCC----CCcCCCccHHHHHHHHHHHHHHHHHHhCCCHHHEEEEEEE
Confidence 347889999999999999999999999999999998 7988789999999999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEEEec
Q 029379 145 LADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALP 192 (194)
Q Consensus 145 v~d~~df~~vn~v~~~~fg~~~Part~v~V~~Lp~~~lVEIe~iA~~~ 192 (194)
++|++||+.+|++|.+||++++|+||+++|..||++++||||++|+++
T Consensus 81 l~d~~~~~~~n~~~~~~f~~~~Part~v~V~~L~~~~~VEIe~iA~~~ 128 (128)
T 1x25_A 81 LKDMNMFNDFNSVYAEYFKDKPPARVTVEVSRLPKDALIEIAVICSKG 128 (128)
T ss_dssp ESCGGGHHHHHHHHHHHCCSSCCEEEEEECSCCGGGCSEEEEEEEEC-
T ss_pred ECCHHHHHHHHHHHHHHcCCCCCCEEEEEcccCCCCCEEEEEEEEEeC
Confidence 999999999999999999999999999999999999999999999864
No 10
>3k0t_A Endoribonuclease L-PSP, putative; glucose binding, ER stressor, sugar binding protein; HET: BGC; 2.10A {Pseudomonas syringae PV}
Probab=100.00 E-value=3.8e-38 Score=246.97 Aligned_cols=133 Identities=44% Similarity=0.688 Sum_probs=118.3
Q ss_pred ccccchHHhh-hhhhcCCCCCCCCCCcccEEEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcC
Q 029379 54 CLSTSAVSNL-KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASG 132 (194)
Q Consensus 54 ~~~~~~~~~l-~~~i~~~~~p~~~g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG 132 (194)
.|+..-...| ++.++++++|++.|+|||++++|+++|+|||+|+|++ +|++.. |+++|++++|+||+++|+++|
T Consensus 9 ~~~~~~~~~m~~~~i~~~~~p~p~g~YS~av~~g~~lfvSGq~~~d~~----~g~~~~-d~~~Qt~~~l~ni~aiL~~aG 83 (143)
T 3k0t_A 9 SMDIEFVDLEGKTVITSDKAPAAIGPYSQAIKAGNTVYMSGQIPLDPS----TMELVE-GIEAQITQVFENLKSVAQAAG 83 (143)
T ss_dssp -----------CEEECCTTSCCCCSSCCSEEEETTEEEEEEECSBCTT----TCSBCS-SHHHHHHHHHHHHHHHHHHTT
T ss_pred ccceeeeccCceeEEcCCCCCCCCCCcCcEEEECCEEEEeeeCCcCCC----CCcCCc-CHHHHHHHHHHHHHHHHHHhC
Confidence 4544444455 5569999999999999999999999999999999998 788754 999999999999999999999
Q ss_pred CCccceeEEEEEEcCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEEEe
Q 029379 133 ADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAAL 191 (194)
Q Consensus 133 ~~l~dVvk~tvyv~d~~df~~vn~v~~~~fg~~~Part~v~V~~Lp~~~lVEIe~iA~~ 191 (194)
++++||+|+++|++|++||+.+|++|.+||++++|+||+++|..||+|++||||++|++
T Consensus 84 ~~l~~Vvk~tvyl~d~~df~~~n~v~~~~f~~~~PArt~v~V~~Lp~~~lVEIe~iA~~ 142 (143)
T 3k0t_A 84 GSFKDIVKLNIFLTDLGHFAKVNEIMGSYFSQPYPARAAIGVAALPRGAQVEMDAILVI 142 (143)
T ss_dssp CCGGGEEEEEEEESCGGGHHHHHHHHTTTCCSSCCEEEEEECSBCGGGCSEEEEEEEEC
T ss_pred CChHHEEEEEEEEcChHHHHHHHHHHHHHcCCCCCcEEEEEcccCCCCCEEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999986
No 11
>2cvl_A TTHA0137, protein translation initiation inhibitor; structural genomics, NPPSFA; 1.65A {Thermus thermophilus} SCOP: d.79.1.1 PDB: 2csl_A 2cw4_A
Probab=100.00 E-value=8.8e-38 Score=238.77 Aligned_cols=122 Identities=52% Similarity=0.846 Sum_probs=117.0
Q ss_pred hhcCCCCCCCCCCcccEEEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEE
Q 029379 66 AVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILL 145 (194)
Q Consensus 66 ~i~~~~~p~~~g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tvyv 145 (194)
.++++++|++.|+|||++++|+++|+|||+|+|++ |++.++|+++|++++|+||+++|+++|++++||+|+++|+
T Consensus 3 ~i~~~~~p~~~g~ys~av~~g~~~~vSGq~~~~~~-----g~~~~~~~~~Q~~~~l~ni~~~L~~ag~~~~~vvk~~vyl 77 (124)
T 2cvl_A 3 AVKTDRAPAAIGPYAQAVKAGGFVFVSGQIPLAPD-----GSLVEGDIRVQTERVMENLKAVLEAAGSGLSRVVQTTCFL 77 (124)
T ss_dssp EECCTTSCCCCSSCBSEEEETTEEEEEEECSBCTT-----SCBCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEE
T ss_pred eecCCCCCCCCCCcCCEEEECCEEEEeeeCCcCCC-----CCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEE
Confidence 47889999999999999999999999999999986 8877799999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEEEec
Q 029379 146 ADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALP 192 (194)
Q Consensus 146 ~d~~df~~vn~v~~~~fg~~~Part~v~V~~Lp~~~lVEIe~iA~~~ 192 (194)
+|++||+.+|++|.+||++++|+||+++|..||++++||||++|+++
T Consensus 78 ~d~~~~~~~~~~~~~~f~~~~Part~v~v~~L~~~~~VEIe~iA~~~ 124 (124)
T 2cvl_A 78 ADMEDFPGFNEVYARYFTPPYPARATVAVKALPRGVRVEVACVALAE 124 (124)
T ss_dssp SCGGGHHHHHHHHHHHCCSSCCEEEEEECSCCGGGCSEEEEEEEECC
T ss_pred cChHHHHHHHHHHHHHcCCCCCceEEEEcccCCCCCEEEEEEEEEeC
Confidence 99999999999999999988999999999999999999999999864
No 12
>1qd9_A Purine regulatory protein YABJ; perchloric acid soluble protein, purine regulation, YJGF/YER057C family, gene regulation; 1.70A {Bacillus subtilis} SCOP: d.79.1.1
Probab=100.00 E-value=1.5e-37 Score=237.65 Aligned_cols=122 Identities=48% Similarity=0.792 Sum_probs=116.6
Q ss_pred hhcCCCCCCCCCCcccEEEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEE
Q 029379 66 AVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILL 145 (194)
Q Consensus 66 ~i~~~~~p~~~g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tvyv 145 (194)
.++++++|.+.|+|||++++|+++|+|||+|+|++ |++..+|+++|++++|+||+++|+++|++++||+|+++|+
T Consensus 3 ~i~~~~~p~~~g~ys~av~~g~~v~vSGq~~~~~~-----g~~~~~d~~~Q~~~~l~ni~~~L~~ag~~~~~vvk~~vyl 77 (124)
T 1qd9_A 3 AVHTKHAPAAIGPYSQGIIVNNMFYSSGQIPLTPS-----GEMVNGDIKEQTHQVFSNLKAVLEEAGASFETVVKATVFI 77 (124)
T ss_dssp EECCTTSCCCCSSCBSEEEETTEEEECCBCSBCTT-----SCBCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEE
T ss_pred EecCCCCCCCCCCCCCEEEECCEEEEeeeCCcCCC-----CCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEE
Confidence 47889999999999999999999999999999985 8886789999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEEEec
Q 029379 146 ADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALP 192 (194)
Q Consensus 146 ~d~~df~~vn~v~~~~fg~~~Part~v~V~~Lp~~~lVEIe~iA~~~ 192 (194)
+|++||+.+|++|.+||++++|+||+++|..||++++||||++|+++
T Consensus 78 ~d~~~~~~~n~~~~~~f~~~~Part~v~v~~L~~~~~VEIe~iA~~~ 124 (124)
T 1qd9_A 78 ADMEQFAEVNEVYGQYFDTHKPARSCVEVARLPKDALVEIEVIALVK 124 (124)
T ss_dssp SCGGGHHHHHHHHHHHSSSCCCEEEEEECSBCGGGCSEEEEEEEECC
T ss_pred cChHHHHHHHHHHHHHcCCCCCCeEEEEcccCCCCCEEEEEEEEEeC
Confidence 99999999999999999988999999999999999999999999863
No 13
>3m1x_A Putative endoribonuclease L-PSP; structural genomics, seattle structural genomics center for infectious disease, ssgcid, unknown function; HET: FLC; 1.20A {Entamoeba histolytica} PDB: 3m4s_A 3mqw_A*
Probab=100.00 E-value=1.2e-37 Score=245.41 Aligned_cols=124 Identities=49% Similarity=0.736 Sum_probs=118.9
Q ss_pred hhhhcCCCCCCCCCCcccEEEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEEEE
Q 029379 64 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTI 143 (194)
Q Consensus 64 ~~~i~~~~~p~~~g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tv 143 (194)
++.++++++|++.|+|||++++|+++|+|||+|+|+. +|++.++|+++|++++|+||+++|+++|++++||+|+++
T Consensus 25 ~~~i~~~~~p~p~g~YS~av~~g~~lfvSGq~~~d~~----~G~~~~~d~~~Q~~~~l~nl~aiL~~aG~~l~~Vvk~tv 100 (148)
T 3m1x_A 25 LTVVASPLAPEAVGAYSQAIICNGXVYCSGQIGLDRK----TGDFAGKTIEEQSKQVMTNLKYVLEEAGSSMDKVVKTTC 100 (148)
T ss_dssp EEEECCSSSCCCCSSCCSEEEETTEEEEEEEESEETT----TTEESCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEE
T ss_pred cEEECCCCCCCCCCCCCcEEEECCEEEEEeeCCcCCC----CCcCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEE
Confidence 3468899999999999999999999999999999996 698877899999999999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEEEe
Q 029379 144 LLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAAL 191 (194)
Q Consensus 144 yv~d~~df~~vn~v~~~~fg~~~Part~v~V~~Lp~~~lVEIe~iA~~ 191 (194)
|++|++||+.+|++|.+||++++|+||+++|..||++++||||++|++
T Consensus 101 yl~d~~df~~~n~v~~~~fg~~~PArt~V~V~~L~~~~lVEIe~iA~l 148 (148)
T 3m1x_A 101 LLADIKDFGVFNGIYAEAFGNHKPARACFAAAALPKGALVEVECIATL 148 (148)
T ss_dssp EESCGGGHHHHHHHHHHHHTTCCCEEEEEECSCCGGGCSEEEEEEEEC
T ss_pred EECCHHHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCEEEEEEEEEC
Confidence 999999999999999999999999999999999999999999999975
No 14
>1qu9_A YJGF protein; structural genomics; HET: CSP; 1.20A {Escherichia coli} SCOP: d.79.1.1 PDB: 1j7h_A 2uyk_A 2uyj_A 2uyn_A* 2uyp_A
Probab=100.00 E-value=1.2e-37 Score=239.13 Aligned_cols=123 Identities=39% Similarity=0.679 Sum_probs=116.7
Q ss_pred hhhcCCCCCCCCCCcccEEEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEE
Q 029379 65 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTIL 144 (194)
Q Consensus 65 ~~i~~~~~p~~~g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tvy 144 (194)
+.++++++|.+.|+|||++++|+++|+|||+|+|++ +|++ ++|+++|++++|+||+++|+++|++++||+|+++|
T Consensus 3 ~~i~~~~~p~~~g~ys~av~~g~~l~vSGq~~~d~~----~g~~-~~d~~~Q~~~~l~ni~~~L~~ag~~~~~vvk~~vy 77 (128)
T 1qu9_A 3 KTIATENAPAAIGPYVQGVDLGNMIITSGQIPVNPK----TGEV-PADVAAQARQSLDNVKAIVEAAGLKVGDIVKTTVF 77 (128)
T ss_dssp EEECCTTSCCCCSSCBSEEECSSEEEECCBCSCCTT----TCCC-CSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEE
T ss_pred ccccCCCCCCCCCCccceEEECCEEEEeccCCccCC----CCCC-CcCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEE
Confidence 457889999999999999999999999999999997 6887 69999999999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHhCCCC---CCceEEEEcCCCCCCceEEEEEEEEec
Q 029379 145 LADLKDFKTVNEIYAKYFPSP---APARATYQVAALPLDARVEIECIAALP 192 (194)
Q Consensus 145 v~d~~df~~vn~v~~~~fg~~---~Part~v~V~~Lp~~~lVEIe~iA~~~ 192 (194)
++|++||+.+|++|.+||+++ +|+||+++|..||++++||||++|+++
T Consensus 78 l~d~~~~~~~n~~~~~~f~~~~~~~Part~v~v~~L~~~~~VEIe~iA~~~ 128 (128)
T 1qu9_A 78 VKDLNDFATVNATYEAFFTEHNATFPARSCVEVARLPKDVKIEIEAIAVRR 128 (128)
T ss_dssp ESCGGGHHHHHHHHHHHHHHTTCCCCEEEEEECSBCGGGCSEEEEEEEECC
T ss_pred EcCHHHHHHHHHHHHHHcCCCCCCCCCEEEEEhhhCCCCCEEEEEEEEEeC
Confidence 999999999999999999955 899999999999999999999999874
No 15
>2cwj_A Putative endonuclease; hydrolase, endoribonucrease, structural GE NPPSFA, national project on protein structural and function analyses; 3.60A {Aeropyrum pernix} SCOP: d.79.1.1
Probab=100.00 E-value=1.5e-37 Score=237.11 Aligned_cols=120 Identities=37% Similarity=0.669 Sum_probs=112.7
Q ss_pred CCCCCCCCCcccEEEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEEcCCC
Q 029379 70 NKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLK 149 (194)
Q Consensus 70 ~~~p~~~g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tvyv~d~~ 149 (194)
+.+|++.|+|||++++|+++|+|||+|+|++ +|++.++|+++|++++|+||+++|+++|++++||+|+++|++|++
T Consensus 2 ~~~p~~~g~ys~av~~g~~l~vSGq~~~~~~----~g~~~~~d~~~Q~~~~l~ni~~~L~~ag~~l~~vvk~~vyl~d~~ 77 (123)
T 2cwj_A 2 ETAPKPVGPYSQAVESGCFMFVSGQIPINPE----TGALEEGGFKESAKRALDNLKAIVEGAGYSMDDIVKVTVYITDIS 77 (123)
T ss_dssp --CCCCCSSCCSCEEETTEEEEEEECCEEGG----GTEECSSSSHHHHHHHHHHHHHHHHHTSCCGGGCCEEEEEESSSS
T ss_pred CCCCCCCCCcccEEEECCEEEEeccCCCCCC----CCcCCCccHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEEcCHH
Confidence 4578899999999999999999999999997 788878999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEEEecC
Q 029379 150 DFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALPN 193 (194)
Q Consensus 150 df~~vn~v~~~~fg~~~Part~v~V~~Lp~~~lVEIe~iA~~~~ 193 (194)
||+.+|++|.+||++++|+||+++|..||++++||||++|++++
T Consensus 78 df~~~n~~~~~~f~~~~Part~v~V~~L~~~~~VEIe~iA~~~~ 121 (123)
T 2cwj_A 78 RFSEFNEVYREYFNRPYPARAVVGVAALPLGAPLEVEAVLYTCR 121 (123)
T ss_dssp HHHHHHHHHHTTCCSSCCEEEEEECSCCGGGCSEEEEEECBC--
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEEhhcCCCCCEEEEEEEEEeCC
Confidence 99999999999999889999999999999999999999998864
No 16
>1xrg_A Putative translation initiation inhibitor, YJGF family; conserved hypothetical protein, protein structure initiative, PSI; 2.20A {Clostridium thermocellum} SCOP: d.79.1.1
Probab=100.00 E-value=7.1e-37 Score=242.97 Aligned_cols=123 Identities=47% Similarity=0.786 Sum_probs=118.2
Q ss_pred hhhcCCCCCCCCCCcccEEEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEE
Q 029379 65 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTIL 144 (194)
Q Consensus 65 ~~i~~~~~p~~~g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tvy 144 (194)
+.++++++|++.|+|||++++|+++|+|||+|+|++ +|++.++|+++|++++|+||+++|+++|++++||+|+++|
T Consensus 34 ~~i~~~~~p~~~g~YS~av~~g~~lfvSGq~~~d~~----tG~l~~~d~~~Qt~~~l~ni~~iL~~aG~~l~~Vvk~tvy 109 (156)
T 1xrg_A 34 EVVKTNKAPEAIGPYSQAIVTGSFVYTSGQIPINPQ----TGEVVDGGIEEQAKQVLENLKNVLEAAGSSLNKVVKTTVF 109 (156)
T ss_dssp EEECCTTSCCCCSSCCSEEEETTEEEECCBCCBCTT----TSSBCSSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEE
T ss_pred eEEcCCCCCCCCCCCCCEEEECCEEEEEeECCcCCC----CCcCCCcCHHHHHHHHHHHHHHHHHHhCCCHHHEEEEEEE
Confidence 458899999999999999999999999999999998 7988779999999999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCCCCceEEEEEEEEe
Q 029379 145 LADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAAL 191 (194)
Q Consensus 145 v~d~~df~~vn~v~~~~fg~~~Part~v~V~~Lp~~~lVEIe~iA~~ 191 (194)
++|++||+.+|++|.+||++++|+||+++|..||++++||||++|++
T Consensus 110 l~d~~df~~~n~v~~~~f~~~~PArt~V~V~~Lp~~~lVEIe~iA~~ 156 (156)
T 1xrg_A 110 IKDMDSFAKVNEVYAKYFSEPYPARSCVEVSKLPKGVLIEIEAVAIK 156 (156)
T ss_dssp ESCGGGHHHHHHHHHTTCCSSCCEEEEEECSBCGGGCSEEEEEEEEC
T ss_pred ECChHHHHHHHHHHHHHcCCCCCceEEEEcCCCCCCCeEEEEEEEEC
Confidence 99999999999999999998899999999999999999999999974
No 17
>3vcz_A Endoribonuclease L-PSP; virulence, pathogenesis, infectious diseases, center for STR genomics of infectious diseases, csgid, translation; HET: GOL; 1.80A {Vibrio vulnificus}
Probab=100.00 E-value=4.3e-37 Score=243.49 Aligned_cols=125 Identities=40% Similarity=0.670 Sum_probs=117.8
Q ss_pred hhhhhcCCCCCCCCCCcccEEEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEEE
Q 029379 63 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTT 142 (194)
Q Consensus 63 l~~~i~~~~~p~~~g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~t 142 (194)
|++.++++++|++.|+||+++++|+++|+|||+|+|++ +|++ ++|+++|++++|+||+++|+++|++++||+|++
T Consensus 25 M~~~i~~~~~p~p~g~YS~av~~g~~lfvSGq~~~d~~----~g~v-~~d~~~Qt~~~l~nl~a~L~~aG~~l~~Vvk~t 99 (153)
T 3vcz_A 25 MTKVLHTDSAPAAIGPYIQGVDLGNMVLTSGQIPVNPA----TGEV-PADIAAQARQSLDNVKAVVEASGLTVGDIVKMT 99 (153)
T ss_dssp -CEEECCTTSCCCCSSCBSEEECSSEEEECCBCSCCTT----TCCC-CSSHHHHHHHHHHHHHHHHHTTTCCGGGEEEEE
T ss_pred cceEEcCCCCCCCCCCcCCEEEECCEEEEeeecccCCC----CCee-CcCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEE
Confidence 46679999999999999999999999999999999998 6776 689999999999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHhCCCC----CCceEEEEcCCCCCCceEEEEEEEEec
Q 029379 143 ILLADLKDFKTVNEIYAKYFPSP----APARATYQVAALPLDARVEIECIAALP 192 (194)
Q Consensus 143 vyv~d~~df~~vn~v~~~~fg~~----~Part~v~V~~Lp~~~lVEIe~iA~~~ 192 (194)
+|++|++||+++|++|.+||+++ +|+||+++|..||.+++||||++|+++
T Consensus 100 vyl~d~~df~~~n~v~~~~f~~~~~~~~PArt~V~V~~L~~~~lVEIeaiA~~~ 153 (153)
T 3vcz_A 100 VFVKDLNDFGTVNEVYGNFFDEHNVAHYPARSCVEVARLPKDVGIEIEAIAVRK 153 (153)
T ss_dssp EEESCGGGHHHHHHHHHHHHHHTTCSSCCEEEEEECSBCGGGCSEEEEEEEEC-
T ss_pred EEEcCchHHHHHHHHHHHHhCCCCCCCCCCEEEEEeccCCCCCEEEEEEEEEeC
Confidence 99999999999999999999965 999999999999999999999999864
No 18
>3lme_A Possible translation initiation inhibitor; structural genomics, RPA2473, PSI-2, protein structure initiative; 2.74A {Rhodopseudomonas palustris} SCOP: d.79.1.0
Probab=100.00 E-value=4.1e-36 Score=233.81 Aligned_cols=123 Identities=25% Similarity=0.435 Sum_probs=114.8
Q ss_pred hhhcCCC-CCCCCCCcccEEEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEEEE
Q 029379 65 EAVVTNK-APAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTI 143 (194)
Q Consensus 65 ~~i~~~~-~p~~~g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tv 143 (194)
+.++++. +|++.|+||+++++|+++|+|||+|+|++ +|++..++ ++|++++|+||+++|+++|++++||+|+++
T Consensus 4 ~~inp~~~~p~p~g~ys~av~~g~~lfvSGq~~~d~~----~g~~~~~~-~~Q~~~~l~ni~~~L~~aG~~l~~Vvk~~v 78 (138)
T 3lme_A 4 KIIAPTDKTITPSGTWSIGARAGDFVFIGGMHGTDRV----TGKMVDGD-EARIRRMFDNMLAAAEAAGATKADAVRLTV 78 (138)
T ss_dssp EECCCCTTSCCCCSSCBSEEEETTEEEEEEEESBCTT----TCCBCSSH-HHHHHHHHHHHHHHHHTTTCCGGGEEEEEE
T ss_pred eEeCCCCCCCCCCCCCCCEEEECCEEEEeccCCcCCC----CCcCCcCH-HHHHHHHHHHHHHHHHHcCCCHHHeEEEEE
Confidence 4578776 99999999999999999999999999997 68875555 799999999999999999999999999999
Q ss_pred EEcCCCCHH-HHHHHHHHhCCC-CCCceEEEEcCCCCCCceEEEEEEEEec
Q 029379 144 LLADLKDFK-TVNEIYAKYFPS-PAPARATYQVAALPLDARVEIECIAALP 192 (194)
Q Consensus 144 yv~d~~df~-~vn~v~~~~fg~-~~Part~v~V~~Lp~~~lVEIe~iA~~~ 192 (194)
|++|++||. .+|++|.+||++ ++|+||+++|..||++++||||++|+++
T Consensus 79 yl~d~~d~~~~~n~v~~~~f~~~~~PArt~v~V~~L~~~~lVEIe~iA~~~ 129 (138)
T 3lme_A 79 FVTDVAKYRPVVNKVQKDIWGDGPYPPRTVLQVPALDQGDIAEIDGTFYAP 129 (138)
T ss_dssp EESCHHHHHHHHHHHHHHHHTTCCCCBEEEEECSCCGGGCSEEEEEEEECC
T ss_pred EECCHHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcCCCCCEEEEEEEEEEc
Confidence 999999996 799999999995 8999999999999999999999999986
No 19
>3lyb_A Putative endoribonuclease; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.66A {Klebsiella pneumoniae}
Probab=100.00 E-value=1e-35 Score=238.33 Aligned_cols=121 Identities=26% Similarity=0.459 Sum_probs=104.5
Q ss_pred CCCCCCCCCCcccEEEECCEEEEeeeccCCCCCCCccCccccc-------------------------cHHHHHHHHHHH
Q 029379 69 TNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSD-------------------------TIEDQTEQVLKN 123 (194)
Q Consensus 69 ~~~~p~~~g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~-------------------------d~~~Q~~~~l~n 123 (194)
++++|.|.|+|||++++|++||+|||+|++++ +|++..+ |+++|++++|+|
T Consensus 4 ~~~ap~p~g~Ys~av~~G~~lfvSGq~~~~~~----~g~l~~g~~~~~~~~~~~~g~~G~~g~~~~~~d~~~Qt~~~l~N 79 (165)
T 3lyb_A 4 EAGAGAPLARYAAWRRAGDFIFLSGIIPVNPL----TGTIVNGFQDVPEPVRELLGATGEFSTDAKQGPILAQSWYVLES 79 (165)
T ss_dssp -----------CCEEEETTEEEECCBCCEETT----TTEECCSGGGSCHHHHHHHTCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCCEEEECCEEEEeeeCCcCCC----CCeEccCcccccccccccccccccccccccccCHHHHHHHHHHH
Confidence 67789999999999999999999999999997 6776544 899999999999
Q ss_pred HHHHHHHcCCCccceeEEEEEEcCCCCHHHHHHHHHHhCCCCCCceEEEEcCCC-C-CCceEEEEEEEEecC
Q 029379 124 IGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAAL-P-LDARVEIECIAALPN 193 (194)
Q Consensus 124 i~~iL~~aG~~l~dVvk~tvyv~d~~df~~vn~v~~~~fg~~~Part~v~V~~L-p-~~~lVEIe~iA~~~~ 193 (194)
|+++|+++|++++||+|+++||+|++||+.+|++|.+||++++|+||+++|..| | ++++||||++|++++
T Consensus 80 i~aiL~~aG~~l~~Vvkvtvyl~d~~df~~~n~v~~~~f~~~~PArt~V~V~~L~p~~~~lVEIe~iA~~~~ 151 (165)
T 3lyb_A 80 IRRTVASAGGQMSDVIKLVQYFRNLDHFPYYSRVRKLFYPDQPPVSTVVQVSEMLPDATVLIEVEATVWLPP 151 (165)
T ss_dssp HHHHHHTTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHCSSCCCEEEEEECSCCSSCTTCCEEEEEEEECC-
T ss_pred HHHHHHHhcCChhHhEEEEEEECCHHHhHHHHHHHHHHcCCCCCceEEEEccccCCCCCCEEEEEEEEEeCC
Confidence 999999999999999999999999999999999999999999999999999999 8 999999999999875
No 20
>1pf5_A Hypothetical protein YJGH; structural genomics, beta barrel, PSI, protein structure INI midwest center for structural genomics, MCSG; 2.50A {Escherichia coli} SCOP: d.79.1.1
Probab=100.00 E-value=5.4e-35 Score=225.22 Aligned_cols=122 Identities=26% Similarity=0.419 Sum_probs=113.8
Q ss_pred hhhcCCCC--CCCCCCcccEEEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEEE
Q 029379 65 EAVVTNKA--PAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTT 142 (194)
Q Consensus 65 ~~i~~~~~--p~~~g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~t 142 (194)
+.+++++. +++.++||+++++|+++|+|||+|+|++ |++ ++|+++|++++|+||+++|+++|++++||+|++
T Consensus 5 ~~inp~~~~~~~~~~~ys~av~~g~~l~vSGq~~~~~~-----g~~-~~d~~~Q~~~~l~ni~~~L~~aG~~~~~vvk~~ 78 (131)
T 1pf5_A 5 TAVFPAGRHSLYAEHRYSAAIRSGDLLFVSGQVGSRED-----GTP-EPDFQQQVRLAFDNLHATLAAAGCTFDDIIDVT 78 (131)
T ss_dssp EEECCSSCCTTTTTTTCCSEEEETTEEEEEEECCBCTT-----SCB-CSSHHHHHHHHHHHHHHHHHTTTCCGGGEEEEE
T ss_pred eeeCCCCccCCCCCCCcCCEEEECCEEEEcccCCcCCC-----Ccc-CcCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEE
Confidence 45777765 4578999999999999999999999986 776 589999999999999999999999999999999
Q ss_pred EEEcCC-CCHHHHHHHHHHhCC-CCCCceEEEEcCCCCCCceEEEEEEEEecC
Q 029379 143 ILLADL-KDFKTVNEIYAKYFP-SPAPARATYQVAALPLDARVEIECIAALPN 193 (194)
Q Consensus 143 vyv~d~-~df~~vn~v~~~~fg-~~~Part~v~V~~Lp~~~lVEIe~iA~~~~ 193 (194)
+|++|+ +||+.+|++|.+||+ .++|+||+++|..|| +++||||++|++++
T Consensus 79 vyl~d~~~~~~~~~~~~~~~f~~~~~Part~v~V~~L~-~~~VEIe~iA~~~~ 130 (131)
T 1pf5_A 79 SFHTDPENQFEDIMTVKNEIFSAPPYPNWTAVGVTWLA-GFDFEIKVIARIPE 130 (131)
T ss_dssp EEESSGGGTHHHHHHHHHHHSCSSSCCCCEEEECSCST-TCSEEEEEEEECCC
T ss_pred EEEcCcHHhHHHHHHHHHHHcCCCCCCCeEEEeecccC-CccEEEEEEEEeCC
Confidence 999999 999999999999998 689999999999999 99999999999875
No 21
>2otm_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.85A {Shewanella oneidensis} SCOP: d.79.1.1
Probab=100.00 E-value=1.4e-35 Score=234.95 Aligned_cols=137 Identities=16% Similarity=0.168 Sum_probs=121.0
Q ss_pred cccchHHhhhhh-hcCCCCCCCCCCcccEEEECCEEEEeeeccCCCCCCCccCcccc----ccHHHHHHHHHHHHHHHHH
Q 029379 55 LSTSAVSNLKEA-VVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVS----DTIEDQTEQVLKNIGEILK 129 (194)
Q Consensus 55 ~~~~~~~~l~~~-i~~~~~p~~~g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~----~d~~~Q~~~~l~ni~~iL~ 129 (194)
|..+.+++++++ ++++..|++.|+|||++++|+++|+|||+|+|+++...+|++.. +|+++|++|+|+||+++|+
T Consensus 2 ~~~~~~~~l~~l~i~~~~~~~~~g~Ys~av~~g~~v~vSGQ~~~~~~~~~~~G~~~~~~~~~~~~~Qa~~~~~Ni~a~L~ 81 (154)
T 2otm_A 2 MMNTPESRLVAAGLELPEVAAALGNYEPYSIVGSQLMTSGQFPYLQGKLLYQGQLGADYTVSEGYAACRLATLNAIAQLK 81 (154)
T ss_dssp -CCCHHHHHHHTTCCCCCCCCCSSSSCSEEEETTEEEECCBCCEETTEECCBSCBTTTBCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHcCCCCCCCCCCCCCCcCEEEECCEEEEeccCCCCCCcccccccccCccCchhHHHHHHHHHHHHHHHHH
Confidence 444578889887 89999999999999999999999999999999874444577632 4689999999999999999
Q ss_pred HcCCCccc---eeEEEEEEcCCCCHHHH-------HHHHHHhCCC-CCCceEEEEcCCCCCCceEEEEEEEEe
Q 029379 130 ASGADYSS---VVKTTILLADLKDFKTV-------NEIYAKYFPS-PAPARATYQVAALPLDARVEIECIAAL 191 (194)
Q Consensus 130 ~aG~~l~d---Vvk~tvyv~d~~df~~v-------n~v~~~~fg~-~~Part~v~V~~Lp~~~lVEIe~iA~~ 191 (194)
++|++++| |+|+++|++|++||.++ +++|.+||+. ++|+||+++|..||++++||||++|.+
T Consensus 82 ~ag~~l~~~~~VVk~tvyv~d~~df~~~~~v~~~~~~~~~~~fg~~~~PArt~v~V~~Lp~~~~VEIEaiA~~ 154 (154)
T 2otm_A 82 QACGELSRIKQIYRLEGVLNVHQSCIEHPKALDGASDLLLEIFGEAGRHSRMIWTNPVMPLNSLCLVYLFAEL 154 (154)
T ss_dssp HHHSSGGGCCEEEEEEEEECBCTTCCCHHHHHHHHHHHHHHHHGGGGCCEEEEEECSSCGGGBSEEEEEEEEC
T ss_pred HcCCCccccCcEEEEEEEECCcHHHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEccccCCCCEEEEEEEEEC
Confidence 99998885 99999999999988765 5899999995 699999999999999999999999974
No 22
>3d01_A Uncharacterized protein; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; HET: PG5; 1.70A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=3e-35 Score=235.39 Aligned_cols=139 Identities=28% Similarity=0.320 Sum_probs=119.8
Q ss_pred ccccchHHhhhhh-hcCCCCCCCCCCcccEEEECCEEEEeeeccCCCCCCCccCcccc----ccHHHHHHHHHHHHHHHH
Q 029379 54 CLSTSAVSNLKEA-VVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVS----DTIEDQTEQVLKNIGEIL 128 (194)
Q Consensus 54 ~~~~~~~~~l~~~-i~~~~~p~~~g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~----~d~~~Q~~~~l~ni~~iL 128 (194)
.|..+.++++++. ++++.+|++.|+|||++++|+++|+|||+|+++++..++|++.. +|+++|++++|+||+++|
T Consensus 9 ~~~~~~e~~l~~~~i~~~~~p~p~g~Ys~av~~g~~lfvSGq~~~~~~~~~~~G~~~~~~~~~d~~~Qa~~~l~ni~~~L 88 (165)
T 3d01_A 9 GMSDVIEGRLKELGFTLPVAAAPAANYVPFTISGNLLYVSGQLPMESGKIAVTGLVGRDVDVASAQRAAELCAVNILAQV 88 (165)
T ss_dssp HHHHHHHHHHHHTTCCCCCC-----CBCSEEEETTEEEEEEECCEETTEECSBSCBTTTBCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHhcCcCCCCCCCCCCCccCEEEECCEEEEeeECCCCCCCccccccccCccCcccHHHHHHHHHHHHHHHH
Confidence 3444567788776 99999999999999999999999999999999864444587754 699999999999999999
Q ss_pred HHcC-CCcc---ceeEEEEEEcCCCCHHH----HH---HHHHHhCCC-CCCceEEEEcCCCCCCceEEEEEEEEec
Q 029379 129 KASG-ADYS---SVVKTTILLADLKDFKT----VN---EIYAKYFPS-PAPARATYQVAALPLDARVEIECIAALP 192 (194)
Q Consensus 129 ~~aG-~~l~---dVvk~tvyv~d~~df~~----vn---~v~~~~fg~-~~Part~v~V~~Lp~~~lVEIe~iA~~~ 192 (194)
+++| ++++ ||+|+++|++|++||+. +| ++|.+||++ ++|+||+++|..||++++||||++|++.
T Consensus 89 ~~ag~~~l~~v~~Vvk~tvyv~d~~df~~~~~v~ngas~~~~~~f~~~~~PArt~V~V~~Lp~~~~VEIe~iA~~~ 164 (165)
T 3d01_A 89 KAALNGDLSKIRRVIKLNGFVASVPEFVEQHLVINGASNLIATVLGEPGRHARAAVGMASLPFNASVEIDAIVEID 164 (165)
T ss_dssp HHHTTTCGGGCCEEEEEEEEEEBCTTCCCHHHHHHHHHHHHHHHHCGGGCBEEEEEEESBCGGGBSEEEEEEEEC-
T ss_pred HHhCCCChhhhCCEEEEEEEECCHHHhhHHHHHhhhHHHHHHHHhCCCCCCceEEEEcccCCCCCEEEEEEEEEEe
Confidence 9999 9999 99999999999999988 68 999999996 7999999999999999999999999864
No 23
>3i7t_A RV2704, putative uncharacterized protein; siras, YJGF/YER057C/UK114, homotrimer, quick SOAK NAI deriva unknown function; 1.93A {Mycobacterium tuberculosis}
Probab=100.00 E-value=7.9e-35 Score=229.66 Aligned_cols=119 Identities=31% Similarity=0.394 Sum_probs=111.0
Q ss_pred hhhhcCCCCCCCCCCcccEEEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEEEE
Q 029379 64 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTI 143 (194)
Q Consensus 64 ~~~i~~~~~p~~~g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tv 143 (194)
++.+++++.|++.++|||++++|++||+|||+|++ +|+++|++++|+||+++|+++|++++||+|+++
T Consensus 4 r~~i~~~~~~~~~~~YS~av~~G~~lfvSGq~~~~------------~d~~~Qt~~~l~ni~aiL~~aG~~l~dVvk~tv 71 (149)
T 3i7t_A 4 RTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSG------------DDIAAQTRDALRRIEIALGQAGATLADVVRTRI 71 (149)
T ss_dssp EEEECCCCHHHHHHTCCSEEEETTEEEEEEEECCS------------SSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEE
T ss_pred ceEecCCCCCCCCCCcCCEEEECCEEEEeccCCCC------------CCHHHHHHHHHHHHHHHHHHccCCHhHEEEEEE
Confidence 34588999999999999999999999999999875 579999999999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHHHhCCCCCCceEEEEcCCCC-CCceEEEEEEEEecCC
Q 029379 144 LLADLKDFKTVNEIYAKYFPSPAPARATYQVAALP-LDARVEIECIAALPNA 194 (194)
Q Consensus 144 yv~d~~df~~vn~v~~~~fg~~~Part~v~V~~Lp-~~~lVEIe~iA~~~~a 194 (194)
|++|++||+.+|++|.+||++++|+||+++|..|+ ++++||||++|+++++
T Consensus 72 yl~d~~df~~~n~v~~~~f~~~~PArt~V~V~~L~~~~~lVEIe~iA~~~~~ 123 (149)
T 3i7t_A 72 YVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEADAYVGSA 123 (149)
T ss_dssp EESCGGGHHHHHHHHHHHHTTTCCBCCEEECSCCSSTTCCEEEEEEEEC---
T ss_pred EECCHHHHHHHHHHHHHHcCCCCCceEEEEeccCCCCCCEEEEEEEEEeCCc
Confidence 99999999999999999999999999999999998 8999999999999864
No 24
>2ig8_A Hypothetical protein PA3499; structural genomics, PSI-2, Pro structure initiative; 1.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=2.1e-34 Score=225.29 Aligned_cols=116 Identities=19% Similarity=0.268 Sum_probs=109.2
Q ss_pred CCCCCCcccEEEECCEEEEeeeccCCCCCCCccCccc-cc---cHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEEcCC
Q 029379 73 PAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFV-SD---TIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADL 148 (194)
Q Consensus 73 p~~~g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~-~~---d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tvyv~d~ 148 (194)
|++.|+|||++++|+++|+|||+|++++ |++. ++ |+++|++++|+||+++|+++|++++||+|+++||+|+
T Consensus 14 ~~~~~~ys~av~~g~~l~vSGq~~~~~~-----g~~~~~~~~~d~~~Q~~~~l~ni~~~L~~aG~~l~~vvk~~vyl~d~ 88 (144)
T 2ig8_A 14 DLPDASWSNALLVGEELVMSGMTAHPAT-----RQAAERGAALDAHAQALVVLGKVKALLEAAGGHVGNLYKLNVYVTRI 88 (144)
T ss_dssp CCTTCSSCSEEEETTEEEECCBCCTTHH-----HHHHHTTCCCCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCG
T ss_pred CCCCCCcCCEEEECCEEEEeeeCCcCCC-----CcEecCCCCcCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCh
Confidence 7889999999999999999999999986 6554 57 9999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhC--CCCCCceEEEEcCCCC-CCceEEEEEEEEecC
Q 029379 149 KDFKTVNEIYAKYF--PSPAPARATYQVAALP-LDARVEIECIAALPN 193 (194)
Q Consensus 149 ~df~~vn~v~~~~f--g~~~Part~v~V~~Lp-~~~lVEIe~iA~~~~ 193 (194)
+||+.+|++|.+|| +.++|+||+++|..|| ++++||||++|++++
T Consensus 89 ~df~~~~~v~~~~f~~~~~~PArt~v~V~~L~~p~~~VEIe~iA~~~~ 136 (144)
T 2ig8_A 89 ADKDAIGRARQEFFAGQGTFPASTLVEVSGLVFPELLVEIDAWARLDI 136 (144)
T ss_dssp GGHHHHHHHHHHHTTTCSSCCEEEEEECSBCSSTTCCEEEEEEEETTC
T ss_pred HHHHHHHHHHHHHhcCCCCCCCEEEEEecccCCCCCEEEEEEEEEeCC
Confidence 99999999999999 5789999999999998 599999999999874
No 25
>3i3f_A Hypothetical protein; structural genomics, niaid, decode, infectious seattle structural genomics center for infectious disease, unknown function; 1.35A {Giardia lamblia}
Probab=100.00 E-value=5.7e-34 Score=222.35 Aligned_cols=122 Identities=24% Similarity=0.358 Sum_probs=112.7
Q ss_pred hhhhcCCCCCCCCCCcccEEEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEEEE
Q 029379 64 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTI 143 (194)
Q Consensus 64 ~~~i~~~~~p~~~g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tv 143 (194)
++.++++..+++ ++|||++++|+++|+|||+|+|++ |++. +|+++|++++|+||+++|+++|++++||+|+++
T Consensus 15 ~~~~~p~~~~~~-~~ys~av~~g~~vfvSGq~~~d~~-----g~~~-~~~~~Q~~~~l~nl~~~L~~aG~~~~~Vvk~~v 87 (141)
T 3i3f_A 15 PTFLVCPDVVKF-ENVGQIAVVNGMVYLGGSVGIDKS-----GTLH-KGLEEQTRQTFDNIRKCLEYANSGLDYIVSLNI 87 (141)
T ss_dssp CEEECCTTSCCC-TTCBCEEEETTEEEECCBCSBCTT-----SCBC-SHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEE
T ss_pred eeEECCCCCCCC-CCcCcEEEECCEEEEeeeCCcCCC-----CCCC-cCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEE
Confidence 345778877776 999999999999999999999986 8875 459999999999999999999999999999999
Q ss_pred EEcCCC---CHHHHHHHHHHhC--CCCCCceEEEEcCCCCCCceEEEEEEEEecC
Q 029379 144 LLADLK---DFKTVNEIYAKYF--PSPAPARATYQVAALPLDARVEIECIAALPN 193 (194)
Q Consensus 144 yv~d~~---df~~vn~v~~~~f--g~~~Part~v~V~~Lp~~~lVEIe~iA~~~~ 193 (194)
|++|++ ||+.+|++|.+|| +.++|+||+++ ..||++++||||++|++.+
T Consensus 88 yl~d~~~~~df~~~n~v~~~~f~~~~~~Part~v~-~~L~~~~lVEIe~iA~~~~ 141 (141)
T 3i3f_A 88 FLSTSLSDSEEARFNELYREVFCVPATRPCRCCVR-AQLQEGLLVEVVNVVAAQK 141 (141)
T ss_dssp EEETTCCHHHHHHHHHHHHHHSCCGGGCCEEEEEE-EBCSTTCSEEEEEEEEECC
T ss_pred EEcCCccccCHHHHHHHHHHHhCCCCCCCcEEEEh-hhCCCCCEEEEEEEEEEcC
Confidence 999999 9999999999999 57899999999 9999999999999998753
No 26
>3kjj_A NMB1025 protein; YJGF protein family, OPPF, structural genomics, oxford protein production facility, UN function; 1.90A {Neisseria meningitidis serogroup B} PDB: 3kjk_A
Probab=100.00 E-value=3.5e-33 Score=214.98 Aligned_cols=109 Identities=31% Similarity=0.476 Sum_probs=102.5
Q ss_pred CCCCcccEEEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEEcCCCCHHHH
Q 029379 75 ALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTV 154 (194)
Q Consensus 75 ~~g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tvyv~d~~df~~v 154 (194)
+.++||+++++|+++|+|||+|++ ++|+++|++++|+||+++|+++|++++||+|+++|++|++||+.+
T Consensus 16 ~~~~ys~av~~g~~lfvSGq~~~d-----------~~d~~~Q~~~~l~nl~~~L~~aG~~l~~Vvk~tvyl~d~~df~~~ 84 (128)
T 3kjj_A 16 TTPRYSEAVGANGLIFLSGMVPEN-----------GETAAEQTADVLAQIDRWLAECGSDKAHVLDAVIYLRDMGDYAEM 84 (128)
T ss_dssp ECSSCEEEEEETTEEEECCBCCSS-----------CSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHH
T ss_pred CCCCcCcEEEECCEEEEeecCCCC-----------CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHH
Confidence 557899999999999999999876 358999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCC-CCCceEEEEcCCCCCCceEEEEEEEEecCC
Q 029379 155 NEIYAKYFPS-PAPARATYQVAALPLDARVEIECIAALPNA 194 (194)
Q Consensus 155 n~v~~~~fg~-~~Part~v~V~~Lp~~~lVEIe~iA~~~~a 194 (194)
|++|.+||++ ++|+||+++|..||++++||||++|++||.
T Consensus 85 n~v~~~~f~~~~~PArt~v~v~ll~~~~lVEIe~iA~~~d~ 125 (128)
T 3kjj_A 85 NGVWDAWVAAGRTPARACVEARLARPEWRVEIKITAVKRDA 125 (128)
T ss_dssp HHHHHHHSCTTCCCEEEEEECBCSSTTCCEEEEEEEECCC-
T ss_pred HHHHHHHhCCCCCCCEEEEEccccCCCCEEEEEEEEEeccc
Confidence 9999999995 799999999988899999999999999873
No 27
>2ewc_A Conserved hypothetical protein; YJGF proteins family, COG025 putative translation initiation inhibitor; 2.15A {Streptococcus pyogenes} SCOP: d.79.1.1
Probab=100.00 E-value=1.1e-32 Score=211.49 Aligned_cols=113 Identities=16% Similarity=0.237 Sum_probs=105.2
Q ss_pred CCCCCCCC-CcccEEEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEEcCC
Q 029379 70 NKAPAALG-PYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADL 148 (194)
Q Consensus 70 ~~~p~~~g-~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tvyv~d~ 148 (194)
...|.+.| +||+++++|+++|+|||+|. .++|+++|++++|+||+++|+++|++++||+|+++|++|+
T Consensus 5 ~~~~~~~~~~ys~av~~g~~l~vSGq~~~-----------~~~d~~~Q~~~~l~ni~~~L~~aG~~l~~Vvk~~vyl~d~ 73 (126)
T 2ewc_A 5 RRYDVNEDRGHTGLVEAGDFYYLNYCVGN-----------VGQDIESQINGAFDEMERRLALVGLTLDAVVQMDCLFRDV 73 (126)
T ss_dssp EEEEEETTTTEEEEEEETTEEEEEEECCS-----------TTSCHHHHHHHHHHHHHHHHHTTTCCGGGEEEEEEEESSG
T ss_pred ccCCCCCCCCcccEEEECCEEEEeCcCCC-----------CCcCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCh
Confidence 34566777 99999999999999999763 2578999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCCCCCCceEEEEcCCCC----CCceEEEEEEEEecC
Q 029379 149 KDFKTVNEIYAKYFPSPAPARATYQVAALP----LDARVEIECIAALPN 193 (194)
Q Consensus 149 ~df~~vn~v~~~~fg~~~Part~v~V~~Lp----~~~lVEIe~iA~~~~ 193 (194)
+||+.+|++|.+||++++|+||+++|..|| ++++||||++|++++
T Consensus 74 ~df~~~n~v~~~~f~~~~Part~v~v~~l~~~~~~~~lVEIe~iA~~~~ 122 (126)
T 2ewc_A 74 WNIPVMEKMIKERFNGRYPARKSIQTEFAHHGGPQGLLFQVDGVAYSKH 122 (126)
T ss_dssp GGHHHHHHHHHHHSTTCCCEEEEEECCCSSCCSTTCCCEEEEEEEECCC
T ss_pred hHHHHHHHHHHHHcCCCCCcEEEEEccCccCCCCCCcEEEEEEEEEecc
Confidence 999999999999999999999999999899 999999999999874
No 28
>3k12_A Uncharacterized protein A6V7T0; structural genomics, unknown function, PSI-2, protein struct initiative; 1.49A {Pseudomonas aeruginosa}
Probab=100.00 E-value=2.1e-32 Score=208.77 Aligned_cols=108 Identities=31% Similarity=0.504 Sum_probs=101.5
Q ss_pred CCCCcccEEEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEEcCCCCHHHH
Q 029379 75 ALGPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTV 154 (194)
Q Consensus 75 ~~g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tvyv~d~~df~~v 154 (194)
+.++||+++++|+++|+|||+|+|+ ++|+++|++++|+||+++|+++|++++||+|+++|++|++||+.+
T Consensus 7 ~~~~ys~av~~g~~vfvSGq~~~d~----------~~d~~~Q~~~~l~ni~~~L~~aG~~~~~Vvk~tvyl~d~~df~~~ 76 (122)
T 3k12_A 7 VVKRRAEMALHGNTVYIGGQVADDP----------SGDIQDQTRQILENIDRLLQSVGSDRGQVLSVRILLAHREDYAGL 76 (122)
T ss_dssp EEEEEEEEEEETTEEEEEEECCSST----------TSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHH
T ss_pred CCCCcCCEEEECCEEEEeeccCCCC----------CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCchHHHHH
Confidence 3468999999999999999999876 468999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCC-CCCCceEEEEcCCCCCCceEEEEEEEEec
Q 029379 155 NEIYAKYFP-SPAPARATYQVAALPLDARVEIECIAALP 192 (194)
Q Consensus 155 n~v~~~~fg-~~~Part~v~V~~Lp~~~lVEIe~iA~~~ 192 (194)
|++|.+||+ .++|+||++++..||++++||||++|...
T Consensus 77 n~v~~~~f~~~~~Part~v~~~ll~~~~lVEIe~iA~~~ 115 (122)
T 3k12_A 77 NQVWDQWFPEGRAPTRACSLAELIDPRWRVEMIVVAARE 115 (122)
T ss_dssp HHHHTTTSCTTCCCEEEEEECBCSSTTCSEEEEEEEECC
T ss_pred HHHHHHHhCCCCCCCEEEEEcccCCCCCEEEEEEEEEec
Confidence 999999999 58999999998878999999999999864
No 29
>3gtz_A Putative translation initiation inhibitor; structural genomics, unknown function, PSI-2, protein struct initiative; 2.50A {Salmonella typhimurium}
Probab=99.98 E-value=9.3e-32 Score=205.83 Aligned_cols=104 Identities=30% Similarity=0.447 Sum_probs=97.9
Q ss_pred CCcccEEEECCEEEEeeeccCCCCCCCccCccccccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEEcCCCCHHHHHH
Q 029379 77 GPYSQAIKANNLVFVSGVLGLVPESPFQTGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNE 156 (194)
Q Consensus 77 g~ys~av~~g~~vyiSGq~~~d~~~~~~~G~~~~~d~~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tvyv~d~~df~~vn~ 156 (194)
++||+++++|+++|+|||+|+| ++|+++|++++|+||+++|+++|++++||+|+++|++|++||+.+|+
T Consensus 12 ~~ys~av~~g~~lfvSGq~~~d-----------~~d~~~Q~~~~l~nl~~~L~~aG~~~~~Vvk~tvyl~d~~df~~~n~ 80 (124)
T 3gtz_A 12 DRWSDVVIYNNTLWYTGVPENL-----------DADAFEQTANTLAQIDAVLEKQGSSKSRILDATIFLSDKADFAAMNK 80 (124)
T ss_dssp SSCEEEEEETTEEEEEECCSCT-----------TSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHH
T ss_pred CCcCCEEEECCEEEEeccCCCC-----------CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHH
Confidence 6899999999999999999886 35899999999999999999999999999999999999999999999
Q ss_pred HHHHhCC-CCCCceEEEEcCCCC-CCceEEEEEEEEec
Q 029379 157 IYAKYFP-SPAPARATYQVAALP-LDARVEIECIAALP 192 (194)
Q Consensus 157 v~~~~fg-~~~Part~v~V~~Lp-~~~lVEIe~iA~~~ 192 (194)
+|.+||+ .++|+||+++ ..|+ ++++||||++|.+.
T Consensus 81 v~~~~f~~~~~Part~v~-~~L~~p~~lVEIe~iA~~~ 117 (124)
T 3gtz_A 81 AWDAWVVAGHAPVRCTVQ-AGLMNPKYKVEIKIVAAVE 117 (124)
T ss_dssp HHHHHSCTTCCCEEEEEE-CEESSTTCSEEEEEEEEC-
T ss_pred HHHHHhCCCCCCcEEEEe-cccCCCCCEEEEEEEEEec
Confidence 9999999 6899999999 7787 59999999999864
No 30
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2
Probab=26.99 E-value=1e+02 Score=23.68 Aligned_cols=46 Identities=9% Similarity=0.080 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccceeEEEEEEcCCCCHHHHHHHHHHhCC
Q 029379 114 EDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFP 163 (194)
Q Consensus 114 ~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tvyv~d~~df~~vn~v~~~~fg 163 (194)
++=++.+++.+++.|+... ++-++.+.+-|.+++..+.+.+.++|+
T Consensus 131 ~~aa~i~~~~v~~~l~~~~----~~~~V~~v~~~~~~~~~~~~~l~~~~~ 176 (184)
T 1spv_A 131 AAAAEIAVKTVSEFITRHA----LPEQVYFVCYDEENAHLYERLLTQQGD 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHCC----SSSEEEEEESSHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHhCC----CCCEEEEEECCHHHHHHHHHHHHHhCC
Confidence 3334444444455554432 234566666677788888888888887
No 31
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens}
Probab=24.09 E-value=1.3e+02 Score=24.15 Aligned_cols=50 Identities=8% Similarity=0.120 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHcC-CCccceeEEEEEEcCCCCHHHHHHHHHHhCCC
Q 029379 114 EDQTEQVLKNIGEILKASG-ADYSSVVKTTILLADLKDFKTVNEIYAKYFPS 164 (194)
Q Consensus 114 ~~Q~~~~l~ni~~iL~~aG-~~l~dVvk~tvyv~d~~df~~vn~v~~~~fg~ 164 (194)
++=++.+++.+++.|+... .++++ |++.+|=.|.+.+..+.+.++++|++
T Consensus 167 ~~aA~i~~~~v~~fl~~~~~~~l~~-V~fv~f~~d~~~~~~f~~~l~~r~~~ 217 (221)
T 3q71_A 167 NIFAELIISEVFKFSSKNQLKTLQE-VHFLLHPSDHENIQAFSDEFARRANG 217 (221)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSCCE-EEEEECTTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCE-EEEEEeCCCHHHHHHHHHHHHHHccC
Confidence 3444455555555555543 22222 23333333444567788888888874
No 32
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=22.51 E-value=1.2e+02 Score=25.44 Aligned_cols=51 Identities=16% Similarity=0.203 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccceeEEEEEEcCCCCHHHHHHHHHHhCCCC
Q 029379 114 EDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSP 165 (194)
Q Consensus 114 ~~Q~~~~l~ni~~iL~~aG~~l~dVvk~tvyv~d~~df~~vn~v~~~~fg~~ 165 (194)
+...+.+++.+++.|+.+|...++|-. .+.+-.....+.+.+..+++|+..
T Consensus 321 ~~~~~~i~~~i~~~l~~~~~~~~~i~~-V~LvGG~s~~p~v~~~l~~~f~~~ 371 (409)
T 4gni_A 321 RTVFEGFNRLVESAVKKAGLDPLDVDE-VIMSGGTSNTPRIAANFRYIFPES 371 (409)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGCCE-EEEESGGGGCHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCE-EEEECCccccHHHHHHHHHHcCCc
Confidence 456788888899999999988777733 344445667899999999999853
No 33
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=21.83 E-value=1.4e+02 Score=20.47 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=23.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHcCCCcc
Q 029379 110 SDTIEDQTEQVLKNIGEILKASGADYS 136 (194)
Q Consensus 110 ~~d~~~Q~~~~l~ni~~iL~~aG~~l~ 136 (194)
..+..++++.+++.|+-.|++-|++.+
T Consensus 5 ~~~~~~~I~~~L~~IRP~L~~dGGdve 31 (88)
T 1xhj_A 5 NPTMFDQVAEVIERLRPFLLRDGGDCT 31 (88)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHSCEEE
T ss_pred hHHHHHHHHHHHHHhcHHHHhcCCeEE
Confidence 357889999999999999999998654
No 34
>1xho_A Chorismate mutase; southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI, structural genomics; 2.20A {Clostridium thermocellum} SCOP: d.79.1.2
Probab=21.58 E-value=2.4e+02 Score=21.38 Aligned_cols=43 Identities=16% Similarity=0.343 Sum_probs=31.1
Q ss_pred cHHHHHH-HHHHHHHHHHHHcCCCccceeEEEEEEc-CC-CCHHHH
Q 029379 112 TIEDQTE-QVLKNIGEILKASGADYSSVVKTTILLA-DL-KDFKTV 154 (194)
Q Consensus 112 d~~~Q~~-~~l~ni~~iL~~aG~~l~dVvk~tvyv~-d~-~df~~v 154 (194)
|-.+.+. .+-+-+++++++.+.+.+||+.+..-+| |+ ..|+..
T Consensus 44 Nt~e~I~~At~ELl~eii~~N~l~~eDIvSv~FTvT~DL~A~FPA~ 89 (148)
T 1xho_A 44 NTADEIVAETQKLLKEMAEKNGLEEDDIISIIFTVTKDLDAAFPAI 89 (148)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEECTTCCSSCTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeCCccCccChHH
Confidence 3344433 3444568889999999999999999998 54 367764
Done!