BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029380
         (194 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P59026|PHLC_CLOHA Phospholipase C OS=Clostridium haemolyticum GN=plc PE=3 SV=1
          Length = 399

 Score = 34.7 bits (78), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 16/114 (14%)

Query: 49  LVVIKTSCDSKNFTRDRISIAFGDAYGNQIYAPRLDDPFTKTFQSCSSDGFQID----GP 104
           +VVIKT+ + K  T   I     +A   + Y   LD+P    F+    D ++I+      
Sbjct: 286 MVVIKTANEDKAGTDHYIHFGI-EAKDGKKYEWTLDNP-GNDFEKNQEDSYRINLKDNKL 343

Query: 105 CATDICYVYLHR---SGL-DGWEPESVKIISPNSSPVTYDFNTSAPNEDWYGVN 154
              DI   ++ +   +G+ D W+PE VK+I   +S V Y  N +    +W+G N
Sbjct: 344 TLQDIAKTWIRKERGAGVRDDWKPEYVKVII--NSDVKYQANIN----EWFGDN 391


>sp|Q23551|UNC22_CAEEL Twitchin OS=Caenorhabditis elegans GN=unc-22 PE=1 SV=3
          Length = 7158

 Score = 32.3 bits (72), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 3/42 (7%)

Query: 139  YDFNTSAPNEDWYGVNLCQIHPPPS--PFEPSPPFPLNLRLL 178
            Y+F  SA NE+  G  L   HP  +  PF+P P  PLNL ++
Sbjct: 5790 YEFRVSAQNENGIGAPLVSEHPIIARLPFDP-PTSPLNLEIV 5830


>sp|P0CO26|SET1_CRYNJ Histone-lysine N-methyltransferase, H3 lysine-4 specific
           OS=Cryptococcus neoformans var. neoformans serotype D
           (strain JEC21 / ATCC MYA-565) GN=SET1 PE=3 SV=1
          Length = 1469

 Score = 31.6 bits (70), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 19/45 (42%)

Query: 130 ISPNSSPVTYDFNTSAPNEDWYGVNLCQIHPPPSPFEPSPPFPLN 174
           I  N SP T  +  S P+ D      C   P P    P+PP P N
Sbjct: 328 IQDNPSPPTGKYPPSPPSLDILSKPSCNREPLPDQRPPTPPLPEN 372


>sp|P0CO27|SET1_CRYNB Histone-lysine N-methyltransferase, H3 lysine-4 specific
           OS=Cryptococcus neoformans var. neoformans serotype D
           (strain B-3501A) GN=SET1 PE=3 SV=1
          Length = 1469

 Score = 31.6 bits (70), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 19/45 (42%)

Query: 130 ISPNSSPVTYDFNTSAPNEDWYGVNLCQIHPPPSPFEPSPPFPLN 174
           I  N SP T  +  S P+ D      C   P P    P+PP P N
Sbjct: 328 IQDNPSPPTGKYPPSPPSLDILSKPSCNREPLPDQRPPTPPLPEN 372


>sp|A0T0Q9|RPOC2_THAPS DNA-directed RNA polymerase subunit beta'' OS=Thalassiosira
           pseudonana GN=rpoC2 PE=3 SV=1
          Length = 1446

 Score = 31.2 bits (69), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 38  NYIQKFGNCTYLVVIKTSCDSKNFTRDRISIAFGDAYGN 76
           NY+  F N TYL+ +K S +SKN+ R +    F  ++ N
Sbjct: 543 NYLLNFNNLTYLITLKDS-NSKNWKRCKKYKPFATSFNN 580


>sp|Q28107|FA5_BOVIN Coagulation factor V OS=Bos taurus GN=F5 PE=1 SV=1
          Length = 2211

 Score = 30.8 bits (68), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 48  YLVVIKTSCDSK--NFTRDRISIAFGDAYGNQIYAPRLDDPFTKTFQSCSSDGFQIDGPC 105
           Y  +I  + D K  +   D  S   G  Y   +Y    DD FTK  +  SS+G  I GP 
Sbjct: 363 YAPIIPANMDKKYRSLHLDNFSNRIGKHYKKVVYKQYQDDSFTKRLEDPSSEGDGILGPI 422


>sp|Q6P2H3|CEP85_HUMAN Centrosomal protein of 85 kDa OS=Homo sapiens GN=CEP85 PE=1 SV=1
          Length = 762

 Score = 30.8 bits (68), Expect = 6.0,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 68  IAFGDAYGNQIYAPRLDDPFTKTFQSCSS---DGFQIDGPCATDICYVYLHRSGLDGWEP 124
           I  G + G +   P + +PF   F  CSS    G    G   +DI   +   SG   ++P
Sbjct: 23  IQKGSSLGTEWQTPVISEPFRSRFSRCSSVADSGDTAIGTSCSDIAEDFCSSSGSPPFQP 82

Query: 125 --ESVKIISPNSSPVTYDFNTSAPN 147
               V I + +  P T   + + PN
Sbjct: 83  IKSHVTIPTAHVMPSTLGTSPAKPN 107


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.139    0.441 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,668,320
Number of Sequences: 539616
Number of extensions: 3261302
Number of successful extensions: 9579
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 9564
Number of HSP's gapped (non-prelim): 28
length of query: 194
length of database: 191,569,459
effective HSP length: 111
effective length of query: 83
effective length of database: 131,672,083
effective search space: 10928782889
effective search space used: 10928782889
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)