Query 029380
Match_columns 194
No_of_seqs 88 out of 90
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 11:59:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029380.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029380hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06232 ATS3: Embryo-specific 100.0 5.4E-59 1.2E-63 370.4 13.1 115 42-156 10-125 (125)
2 cd00113 PLAT PLAT (Polycystin- 99.9 5.5E-21 1.2E-25 143.1 12.0 109 46-156 1-114 (116)
3 cd01754 PLAT_plant_stress PLAT 99.8 2.7E-19 5.8E-24 142.3 11.7 109 46-154 1-128 (129)
4 cd01753 PLAT_LOX PLAT domain o 99.7 1.2E-15 2.6E-20 117.6 11.1 102 47-150 2-107 (113)
5 cd01756 PLAT_repeat PLAT/LH2 d 99.6 6.5E-15 1.4E-19 113.2 11.3 99 47-146 2-105 (120)
6 cd01752 PLAT_polycystin PLAT/L 99.6 2.3E-14 5.1E-19 110.3 10.9 99 47-146 2-105 (120)
7 cd02899 PLAT_SR Scavenger rece 99.5 2.1E-13 4.5E-18 106.1 10.0 97 47-148 2-101 (109)
8 smart00308 LH2 Lipoxygenase ho 99.4 1.5E-12 3.2E-17 96.2 10.8 98 47-145 2-102 (105)
9 PF01477 PLAT: PLAT/LH2 domain 99.3 2.8E-12 6E-17 94.2 6.2 99 48-149 1-104 (113)
10 cd01757 PLAT_RAB6IP1 PLAT/LH2 98.8 4.2E-08 9E-13 77.1 9.8 90 47-146 2-96 (114)
11 cd01755 PLAT_lipase PLAT/ LH2 97.8 0.00049 1.1E-08 53.6 10.9 90 46-139 1-102 (120)
12 cd01758 PLAT_LPL PLAT/ LH2 dom 96.6 0.026 5.6E-07 45.7 9.8 78 46-126 1-80 (137)
13 KOG4063 Major epididymal secre 76.7 3.9 8.4E-05 34.7 4.0 65 1-72 1-66 (158)
14 PF07172 GRP: Glycine rich pro 39.6 26 0.00057 26.9 2.4 18 1-18 1-18 (95)
15 PF10731 Anophelin: Thrombin i 39.5 29 0.00062 25.6 2.4 21 1-21 1-21 (65)
16 COG3354 FlaG Putative archaeal 38.4 81 0.0018 26.8 5.2 35 43-80 67-102 (154)
17 COG3543 Uncharacterized conser 29.9 16 0.00035 30.3 -0.2 14 1-14 1-14 (135)
18 smart00606 CBD_IV Cellulose Bi 28.8 2.5E+02 0.0054 20.9 7.4 75 46-128 53-128 (129)
19 KOG1693 emp24/gp25L/p24 family 28.3 2.3E+02 0.005 25.2 6.6 57 43-113 44-100 (209)
20 PF01108 Tissue_fac: Tissue fa 26.6 20 0.00044 26.6 -0.1 27 27-53 23-58 (107)
21 PF10295 DUF2406: Uncharacteri 22.5 52 0.0011 24.5 1.3 23 71-93 33-55 (69)
22 PTZ00490 Ferredoxin superfamil 20.4 1.5E+02 0.0032 24.4 3.7 53 61-115 31-88 (143)
No 1
>PF06232 ATS3: Embryo-specific protein 3, (ATS3); InterPro: IPR010417 This is a family of plant seed-specific proteins identified in Arabidopsis thaliana (Mouse-ear cress). ATS3 is expressed in a pattern similar to the Arabidopsis seed storage protein genes [].
Probab=100.00 E-value=5.4e-59 Score=370.44 Aligned_cols=115 Identities=61% Similarity=1.125 Sum_probs=113.1
Q ss_pred ccCCceEEEEEEecCCCCccCCceeEEEEecCCCCeEEecCCCCCCC-CCccCccccceeeecCCcccccEEEEEEeCCC
Q 029380 42 KFGNCTYLVVIKTSCDSKNFTRDRISIAFGDAYGNQIYAPRLDDPFT-KTFQSCSSDGFQIDGPCATDICYVYLHRSGLD 120 (194)
Q Consensus 42 ~~~~C~YtV~IkTsC~s~a~T~d~ISl~FgDa~Gn~V~v~~Ld~p~~-~~FErCs~DtF~v~GpCl~~IC~lyL~r~G~d 120 (194)
++++|+|||+|||||+|+|+|+|+|||+||||+||+||++|||+|++ ++||||++|+|+|+|||+++||||||+|+|+|
T Consensus 10 ~~~~CsYtv~IkTsC~s~a~T~d~Isi~FgDa~Gn~v~~~~Ld~p~~~~~FErCs~DtF~v~G~C~~~IC~lyL~r~G~d 89 (125)
T PF06232_consen 10 QAGSCSYTVTIKTSCSSPAGTDDQISIAFGDAYGNQVYVPRLDDPGSGDTFERCSTDTFQVTGPCLYQICYLYLYRSGSD 89 (125)
T ss_pred cCCCCcEEEEEEeCcCCCcCCcceEEEEEecCCCCEEEEccCCCCCccCchhcCCcceeEeecccCCcccEEEEEEccCC
Confidence 46789999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred CceecEEEEecCCCCceeEEecccCCCCCceeeccC
Q 029380 121 GWEPESVKIISPNSSPVTYDFNTSAPNEDWYGVNLC 156 (194)
Q Consensus 121 GW~pe~V~V~~~~~~~vtF~f~~~LP~~vwyG~N~C 156 (194)
||+||||+||+++++|++||||+|||+++|||||+|
T Consensus 90 GW~Pe~V~Iy~~~~~~~~F~~~~~lp~~vwyG~n~C 125 (125)
T PF06232_consen 90 GWKPEWVQIYGSGSKPVTFYFNTFLPNGVWYGFNYC 125 (125)
T ss_pred CCEeCeEEEEEcCCCCeEEECCCcCCCCCcccccCC
Confidence 999999999999999999999999999999999999
No 2
>cd00113 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates.
Probab=99.86 E-value=5.5e-21 Score=143.09 Aligned_cols=109 Identities=35% Similarity=0.472 Sum_probs=99.1
Q ss_pred ceEEEEEEecCCCCccCCceeEEEEecCCCCeEEecCCCCCCCCCccCccccceeeecC-CcccccEEEEEEeCCC---C
Q 029380 46 CTYLVVIKTSCDSKNFTRDRISIAFGDAYGNQIYAPRLDDPFTKTFQSCSSDGFQIDGP-CATDICYVYLHRSGLD---G 121 (194)
Q Consensus 46 C~YtV~IkTsC~s~a~T~d~ISl~FgDa~Gn~V~v~~Ld~p~~~~FErCs~DtF~v~Gp-Cl~~IC~lyL~r~G~d---G 121 (194)
|.|+|+|+||+...|||+++|.|.+.++.|++..+..+++++. |||+++|+|.|..+ .++.|++|.|.++++. +
T Consensus 1 ~~Y~v~V~Tg~~~~agT~~~v~i~l~g~~g~s~~~~l~~~~~~--f~~g~~~~f~v~~~~~lG~i~~v~l~~d~~g~~~~ 78 (116)
T cd00113 1 CRYTVTIKTGDKKGAGTDSNISLALYGENGNSSDIPILDGPGS--FERGSTDTFQIDLKLDIGDITKVYLRRDGSGLSDG 78 (116)
T ss_pred CEEEEEEEECCCCCCCccCEEEEEEEeCCCCcccEEccCCCCc--ccCCCceEEEEeccCCCcCeEEEEEEECCCCCCCC
Confidence 7899999999999999999999999999999999887765543 99999999999999 6699999999999884 9
Q ss_pred ceecEEEEecCCC-CceeEEecccCCCCCceeeccC
Q 029380 122 WEPESVKIISPNS-SPVTYDFNTSAPNEDWYGVNLC 156 (194)
Q Consensus 122 W~pe~V~V~~~~~-~~vtF~f~~~LP~~vwyG~N~C 156 (194)
|++++|+|..... ....|.++.||..+.++..++|
T Consensus 79 W~l~~V~V~~~~~~~~~~F~~~~Wl~~~~~~~~~r~ 114 (116)
T cd00113 79 WYCESITVQALGTKKVYTFPVNRWVLGGKWYTSVRS 114 (116)
T ss_pred EEEeEEEEEeCCCCCEEEEEeCCCcccCCCCCceee
Confidence 9999999997654 7799999999999998887765
No 3
>cd01754 PLAT_plant_stress PLAT/LH2 domain of plant-specific single domain protein family with unknown function. Many of its members are stress induced. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=99.81 E-value=2.7e-19 Score=142.32 Aligned_cols=109 Identities=24% Similarity=0.346 Sum_probs=94.1
Q ss_pred ceEEEEEEecCCCCccCCceeEEEEecCCCCeEEecCCC------CCCCCCccCccccceeeecCCc-ccccEEEEEEeC
Q 029380 46 CTYLVVIKTSCDSKNFTRDRISIAFGDAYGNQIYAPRLD------DPFTKTFQSCSSDGFQIDGPCA-TDICYVYLHRSG 118 (194)
Q Consensus 46 C~YtV~IkTsC~s~a~T~d~ISl~FgDa~Gn~V~v~~Ld------~p~~~~FErCs~DtF~v~GpCl-~~IC~lyL~r~G 118 (194)
|.|+|+|+||....|||+++|+|.+.+..|+...+..++ +++.+.|||+++|+|.|..++. ++||++.|.+|+
T Consensus 1 ~~Y~I~V~TG~~~gAGTdanV~i~l~G~~G~s~~~~l~~~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~l~~irI~HDn 80 (129)
T cd01754 1 CVYTIYVQTGSIWKAGTDSRISLQIYDADGPGLRIANLEAWGGLMGAGHDYFERGNLDRFSGRGPCLPSPPCWMNLTSDG 80 (129)
T ss_pred CEEEEEEEECCCcccCCcceEEEEEEeCCCCcccEEcccccccccccccccccCCCccEEEEEeccCCCCeEEEEEEECC
Confidence 899999999999999999999999999999998887654 3567899999999999999986 899999999996
Q ss_pred C---CCceecEEEEecCC----CCceeEEecccC-----CCCCceeec
Q 029380 119 L---DGWEPESVKIISPN----SSPVTYDFNTSA-----PNEDWYGVN 154 (194)
Q Consensus 119 ~---dGW~pe~V~V~~~~----~~~vtF~f~~~L-----P~~vwyG~N 154 (194)
+ ++|++++|+|.... .....|-.++|| |.-+...+|
T Consensus 81 ~G~~p~W~l~~V~V~d~~~~~~~~~~~F~c~rWLa~d~~~~~~~~~~~ 128 (129)
T cd01754 81 TGNHPGWYVNYVEVTQAGQHAPCMQHLFAVEQWLATDESPYMLTAVRN 128 (129)
T ss_pred CCCCCCcccCEEEEEeCCCCCcCcEEEEEecEeccCCCCcceeEEEec
Confidence 6 69999999998743 235779999999 445555444
No 4
>cd01753 PLAT_LOX PLAT domain of 12/15-lipoxygenase. As a unique subfamily of the mammalian lipoxygenases, they catalyze enzymatic lipid peroxidation in complex biological structures via direct dioxygenation of phospholipids and cholesterol esters of biomembranes and plasma lipoproteins. Both types of enzymes are cytosolic but need this domain to access their sequestered membrane or micelle bound substrates.
Probab=99.66 E-value=1.2e-15 Score=117.56 Aligned_cols=102 Identities=18% Similarity=0.228 Sum_probs=90.0
Q ss_pred eEEEEEEecCCCCccCCceeEEEEecCCCCeEEecCCCCCCCCCccCccccceeeecC-CcccccEEEEEEeCC---CCc
Q 029380 47 TYLVVIKTSCDSKNFTRDRISIAFGDAYGNQIYAPRLDDPFTKTFQSCSSDGFQIDGP-CATDICYVYLHRSGL---DGW 122 (194)
Q Consensus 47 ~YtV~IkTsC~s~a~T~d~ISl~FgDa~Gn~V~v~~Ld~p~~~~FErCs~DtF~v~Gp-Cl~~IC~lyL~r~G~---dGW 122 (194)
.|+|+|+||-...|||+++|.|.+.+..|+.-.+ .|+++..+ |||+++|+|.|..+ .+++|++|.|.+|++ ++|
T Consensus 2 ~Y~V~V~Tg~~~~AGT~a~V~i~l~G~~g~S~~~-~L~~~~~~-FerG~~d~F~v~~~~~lG~l~~i~i~~d~~g~~~~W 79 (113)
T cd01753 2 EYKVTVATGSSLFAGTDDYIYLTLVGTAGESEKQ-LLDRPGYD-FERGAVDEYKVKVPEDLGELLLVRLRKRKYLLFDAW 79 (113)
T ss_pred EEEEEEEECCCcCCccccEEEEEEEECCCcccCE-EcCCCCCc-cCCCCeeEEEEecccCCCCcEEEEEEECCCCCCCCe
Confidence 5999999999999999999999999999998776 47777654 99999999999987 569999999999965 799
Q ss_pred eecEEEEecCCCCceeEEecccCCCCCc
Q 029380 123 EPESVKIISPNSSPVTYDFNTSAPNEDW 150 (194)
Q Consensus 123 ~pe~V~V~~~~~~~vtF~f~~~LP~~vw 150 (194)
++++|+|.+.......|..++||..+.-
T Consensus 80 ~l~~V~V~~~~~~~~~F~c~rWl~~~~~ 107 (113)
T cd01753 80 FCNYITVTGPGGDEYHFPCYRWIEGYGT 107 (113)
T ss_pred eecEEEEEcCCCCEEEEEhHHeECCCCE
Confidence 9999999988766678889999975543
No 5
>cd01756 PLAT_repeat PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=99.61 E-value=6.5e-15 Score=113.19 Aligned_cols=99 Identities=19% Similarity=0.246 Sum_probs=89.8
Q ss_pred eEEEEEEecCCCCccCCceeEEEEecCCCCeEEecCCCCC-CCCCccCccccceeeecCCcccccEEEEEEeCC---CCc
Q 029380 47 TYLVVIKTSCDSKNFTRDRISIAFGDAYGNQIYAPRLDDP-FTKTFQSCSSDGFQIDGPCATDICYVYLHRSGL---DGW 122 (194)
Q Consensus 47 ~YtV~IkTsC~s~a~T~d~ISl~FgDa~Gn~V~v~~Ld~p-~~~~FErCs~DtF~v~GpCl~~IC~lyL~r~G~---dGW 122 (194)
.|+|+|+||-...|||+++|.|.+....|+.-.+ .|+++ ..+.|||+++|+|.+..+-++.+.+|.|.+|++ ++|
T Consensus 2 ~Y~v~v~TG~~~~AGT~a~V~i~L~G~~g~s~~~-~L~~~~~~~~FerGs~d~F~i~~~~lG~l~~i~i~~d~~g~~~~W 80 (120)
T cd01756 2 TYEVTVKTGDVKGAGTDANVFITLYGENGDTGKR-KLKKSNNKNKFERGQTDKFTVEAVDLGKLKKIRIGHDNSGLGAGW 80 (120)
T ss_pred EEEEEEEECCCcCCCCCcEEEEEEEeCCCccccE-EccCCCcCCcccCCCeEEEEEEecCCCCeEEEEEEECCCCCCCCc
Confidence 5999999999999999999999999999987765 58876 667999999999999999899999999999976 699
Q ss_pred eecEEEEecCC-CCceeEEecccCC
Q 029380 123 EPESVKIISPN-SSPVTYDFNTSAP 146 (194)
Q Consensus 123 ~pe~V~V~~~~-~~~vtF~f~~~LP 146 (194)
++++|+|.... .....|.+++||-
T Consensus 81 ~~~~V~V~~~~~~~~~~F~~~~Wl~ 105 (120)
T cd01756 81 FLDKVEIREPGTGDEYTFPCNRWLD 105 (120)
T ss_pred EEeEEEEEECCCceEEEEEeCCccC
Confidence 99999999765 5668899999995
No 6
>cd01752 PLAT_polycystin PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological functions remain poorly defined. In human, mutations in polycystin-1 (PKD1) and polycystin-2 (PKD2) have been shown to be the cause for autosomal dominant polycystic kidney disease (ADPKD). The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=99.57 E-value=2.3e-14 Score=110.30 Aligned_cols=99 Identities=20% Similarity=0.228 Sum_probs=89.1
Q ss_pred eEEEEEEecCCCCccCCceeEEEEecCCCCeEEecCCCCCCCCCccCccccceeeecCC-cccccEEEEEEeCC---CCc
Q 029380 47 TYLVVIKTSCDSKNFTRDRISIAFGDAYGNQIYAPRLDDPFTKTFQSCSSDGFQIDGPC-ATDICYVYLHRSGL---DGW 122 (194)
Q Consensus 47 ~YtV~IkTsC~s~a~T~d~ISl~FgDa~Gn~V~v~~Ld~p~~~~FErCs~DtF~v~GpC-l~~IC~lyL~r~G~---dGW 122 (194)
.|+|+|+||-...|||+++|.|.+....|+.-.+ .|+++....|||+++|+|.+..+. ++++++|.|.+|++ ++|
T Consensus 2 ~Y~v~v~Tg~~~gAGT~a~V~i~L~G~~g~s~~~-~L~~~~~~~F~rG~~~~f~i~~~~dlG~l~~i~l~hd~~g~~~~W 80 (120)
T cd01752 2 LYLVTVFTGWRRGAGTTAKVTITLYGAEGESEPH-HLRDPEKPIFERGSVDSFLLTTPFPLGELQSIRLWHDNSGLSPSW 80 (120)
T ss_pred EEEEEEEECCCCCCCcccEEEEEEEeCCCCcccE-EcCCCCccceeCCCeeEEEecCccCCCCccEEEEEECCCCCCCCe
Confidence 5999999999999999999999999999998775 688887789999999999999875 59999999999975 799
Q ss_pred eecEEEEecCC-CCceeEEecccCC
Q 029380 123 EPESVKIISPN-SSPVTYDFNTSAP 146 (194)
Q Consensus 123 ~pe~V~V~~~~-~~~vtF~f~~~LP 146 (194)
++++|+|.... .....|..++||-
T Consensus 81 ~l~~V~V~~~~t~~~~~F~~~rWl~ 105 (120)
T cd01752 81 YLSRVIVRDLQTGKKWFFLCNDWLS 105 (120)
T ss_pred EEEEEEEEECCCCcEEEEEeCcEEC
Confidence 99999999764 5567899999994
No 7
>cd02899 PLAT_SR Scavenger receptor protein. A subfamily of PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates. This subfamily contains Toxoplasma gondii Scavenger protein TgSR1.
Probab=99.49 E-value=2.1e-13 Score=106.09 Aligned_cols=97 Identities=23% Similarity=0.291 Sum_probs=85.4
Q ss_pred eEEEEEEecCCCCccCCceeEEEEecCCCCeEEecCCCCCCCCCccCccccceeeecCCcccccEEEEEEeCC-CCceec
Q 029380 47 TYLVVIKTSCDSKNFTRDRISIAFGDAYGNQIYAPRLDDPFTKTFQSCSSDGFQIDGPCATDICYVYLHRSGL-DGWEPE 125 (194)
Q Consensus 47 ~YtV~IkTsC~s~a~T~d~ISl~FgDa~Gn~V~v~~Ld~p~~~~FErCs~DtF~v~GpCl~~IC~lyL~r~G~-dGW~pe 125 (194)
.|+|+|+||-...|||+++|.|.+.+..|..=.. .|++ .|||++.|+|.|++..++++=.+.|.++|. ++||++
T Consensus 2 ~Y~I~V~TG~~~~AGT~~~V~i~L~G~~g~S~~~-~L~~----~F~~G~~d~F~v~~~dLG~l~~i~l~n~g~~~~Wf~~ 76 (109)
T cd02899 2 TYTASVQTGKDKEAGTNGTIEITLLGSSGRSNPK-TLSQ----GFYPGSLKRIRFRAADVGDINAIILSNTALNDPWYCD 76 (109)
T ss_pred eEEEEEEECCCCCCCccceEEEEEEECCCCcCCE-EccC----ccCCCceEEEEECccccCceEEEEEECCCCCCCceee
Confidence 5999999999999999999999999999966553 3443 499999999999999999999999988887 799999
Q ss_pred EEEEecCCCCceeEEecccC--CCC
Q 029380 126 SVKIISPNSSPVTYDFNTSA--PNE 148 (194)
Q Consensus 126 ~V~V~~~~~~~vtF~f~~~L--P~~ 148 (194)
+|+|..+..+...|-.++|| |++
T Consensus 77 ~V~V~~~~g~~~~Fpc~rWla~~~~ 101 (109)
T cd02899 77 YVRIKSEDGKVFAFNVKRWIGYPYE 101 (109)
T ss_pred EEEEECCCCCEEEEEcceeeCCchh
Confidence 99999876677789999999 654
No 8
>smart00308 LH2 Lipoxygenase homology 2 (beta barrel) domain.
Probab=99.44 E-value=1.5e-12 Score=96.23 Aligned_cols=98 Identities=18% Similarity=0.185 Sum_probs=81.8
Q ss_pred eEEEEEEecCCCCccCCceeEEEEecCCCCeEEecCCCCCCCCCccCccccceeeecCC-cccccEEEEEEeC-CCCcee
Q 029380 47 TYLVVIKTSCDSKNFTRDRISIAFGDAYGNQIYAPRLDDPFTKTFQSCSSDGFQIDGPC-ATDICYVYLHRSG-LDGWEP 124 (194)
Q Consensus 47 ~YtV~IkTsC~s~a~T~d~ISl~FgDa~Gn~V~v~~Ld~p~~~~FErCs~DtF~v~GpC-l~~IC~lyL~r~G-~dGW~p 124 (194)
.|+|+|+||=...|||+++|.|.+....|+.-.. .+.......|||+++|+|.+..+. ++++.++.+.+++ .++|++
T Consensus 2 ~Y~v~V~Tg~~~~aGT~~~V~l~L~g~~~~s~~~-~~~~~~~~~f~~g~~~~f~v~~~~~lG~l~~v~v~~d~~~~~w~l 80 (105)
T smart00308 2 KYKVTVTTGGLDFAGTTASVSLSLVGAEGDGKES-KLDYLFKGIFARGSTYEFTFDVDEDFGELGAVKIKNEHRHPEWFL 80 (105)
T ss_pred EEEEEEEECCccCCCccceEEEEEEeCCCCCcce-eccccCCccccCCceEEEEEecccCCCCcEEEEEEeCCCCCCeEE
Confidence 5999999999999999999999999999642211 112112235999999999999986 7999999999999 799999
Q ss_pred cEEEEecC-CCCceeEEecccC
Q 029380 125 ESVKIISP-NSSPVTYDFNTSA 145 (194)
Q Consensus 125 e~V~V~~~-~~~~vtF~f~~~L 145 (194)
++|+|.+. ......|-.++||
T Consensus 81 ~~V~V~~~~~~~~~~F~c~~Wl 102 (105)
T smart00308 81 KSITVKDLPTGGKYHFPCNSWV 102 (105)
T ss_pred EEEEEEECCCCCEEEEEcCcee
Confidence 99999874 5678999999998
No 9
>PF01477 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents a domain found in lipoxygenases and other enzymes. It is known as the PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology) domain, is found in a variety of membrane or lipid associated proteins. Structurally, this domain forms a beta-sandwich composed of two sheets of four strands each [, , ]. The most highly conserved regions coincide with the beta-strands, with most of the highly conserved residues being buried within the protein. An exception to this is a surface lysine or arginine that occurs on the surface of the fifth beta-strand of the eukaryotic domains. In pancreatic lipase, the lysine in this position forms a salt bridge with the procolipase protein. The conservation of a charged surface residue may indicate the location of a conserved ligand-binding site. It is thought that this domain may mediate membrane attachment via other protein binding partners.; GO: 0005515 protein binding; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 3O8Y_B 3V99_B 3V92_A 3V98_B 1HPL_A ....
Probab=99.33 E-value=2.8e-12 Score=94.23 Aligned_cols=99 Identities=22% Similarity=0.254 Sum_probs=84.0
Q ss_pred EEEEEEecCCCCccCCceeEEEEecCCCCeEEecCCCCCCCCCccCccccceeeecC-CcccccEEEEEEeCC---CCce
Q 029380 48 YLVVIKTSCDSKNFTRDRISIAFGDAYGNQIYAPRLDDPFTKTFQSCSSDGFQIDGP-CATDICYVYLHRSGL---DGWE 123 (194)
Q Consensus 48 YtV~IkTsC~s~a~T~d~ISl~FgDa~Gn~V~v~~Ld~p~~~~FErCs~DtF~v~Gp-Cl~~IC~lyL~r~G~---dGW~ 123 (194)
|+|.|+||-...|||+++|.|.+....|+.-...-++.+. ..+ .++|+|.+..+ -++.|.++.|.++|. ++|+
T Consensus 1 Y~v~v~Tg~~~~aGT~~~V~i~l~G~~g~s~~~~l~~~~~-~~~--g~~d~F~i~~~~~lG~i~~i~i~~~~~~~~~~W~ 77 (113)
T PF01477_consen 1 YRVTVKTGDERGAGTDANVYITLYGSKGKSGEIELLDPSG-FNF--GSTDTFTIETPEDLGEIQKIRIWHDGSGPSPSWY 77 (113)
T ss_dssp EEEEEEEESSTEEEESSEEEEEEEETTEEEEEEEEEEEEE-TST--TEEEEEEEEESSCGCSEEEEEEEEESSSSSSEEE
T ss_pred CEEEEEECCCCCCCcCCeEEEEEEECCCCcceEEEeeeee-ccc--CceEEeeeeecccCCCCcEEEEEEccCCCccceE
Confidence 9999999999999999999999999999987765444332 223 99999999995 679999999999955 7999
Q ss_pred ecEEEEecC-CCCceeEEecccCCCCC
Q 029380 124 PESVKIISP-NSSPVTYDFNTSAPNED 149 (194)
Q Consensus 124 pe~V~V~~~-~~~~vtF~f~~~LP~~v 149 (194)
+++|+|... .....+|.++.||-.+.
T Consensus 78 l~~V~V~~~~~~~~~~F~~~~Wl~~~~ 104 (113)
T PF01477_consen 78 LDSVVVTDGETGRTYTFPCNRWLDPDK 104 (113)
T ss_dssp EEEEEEEETTTSEEEEEEEEEEESTTE
T ss_pred EEEEEEEeCCCCcEEEEEcCCEECCCC
Confidence 999999884 56789999999996443
No 10
>cd01757 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 interacting protein 1 (Rab6IP1)_like family. PLAT/LH2 domains consists of an eight stranded beta-barrel. In RabIP1 this domain may participate in lipid-mediated modulation of Rab6IP1's function via it's generally proposed function of mediating interaction with lipids or membrane bound proteins.
Probab=98.81 E-value=4.2e-08 Score=77.12 Aligned_cols=90 Identities=13% Similarity=0.141 Sum_probs=74.2
Q ss_pred eEEEEEEecCC-CCccCCceeEEEEecCCCCeEEecCCCCCCCCCccCccccceeeecCCcccccEEEEEEeCC---CCc
Q 029380 47 TYLVVIKTSCD-SKNFTRDRISIAFGDAYGNQIYAPRLDDPFTKTFQSCSSDGFQIDGPCATDICYVYLHRSGL---DGW 122 (194)
Q Consensus 47 ~YtV~IkTsC~-s~a~T~d~ISl~FgDa~Gn~V~v~~Ld~p~~~~FErCs~DtF~v~GpCl~~IC~lyL~r~G~---dGW 122 (194)
.|.|+|.||-. ..|||+++|+|.+....|+.= ...|+++ .| .|.+....++++-++.+.||.+ ++|
T Consensus 2 ~Y~VtV~TG~~~~gAGT~anV~i~L~G~~g~s~-~~~L~~~---~f------~~~v~~~~LG~L~~irIwHDnsG~~~~W 71 (114)
T cd01757 2 PYHVVIVPSKKLGGSMFTANPWICVSGELGETP-PLQIPKN---SL------EMTFDCQNLGKLTTVQIGHDNSGLLAKW 71 (114)
T ss_pred eEEEEEEeCCCCCCCCCcceEEEEEEEcCCCcC-CEEecCC---ce------EEEEecCCcCCcEEEEEEECCCCCCCCe
Confidence 59999999999 699999999999999998643 3345532 34 5888778889999999999955 799
Q ss_pred eecEEEEecC-CCCceeEEecccCC
Q 029380 123 EPESVKIISP-NSSPVTYDFNTSAP 146 (194)
Q Consensus 123 ~pe~V~V~~~-~~~~vtF~f~~~LP 146 (194)
++++|+|... ......|-.++||-
T Consensus 72 fl~~V~V~d~~t~~~~~FpC~rWLa 96 (114)
T cd01757 72 LVEYVMVRNEITGHTYKFPCGRWLG 96 (114)
T ss_pred eeeEEEEEeCCCCCEEEEecCceec
Confidence 9999999984 55567788999993
No 11
>cd01755 PLAT_lipase PLAT/ LH2 domain present in connection with a lipase domain. This family contains two major subgroups, the lipoprotein lipase (LPL) and the pancreatic triglyceride lipase. LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs). The central role of triglyceride lipases is in energy production. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=97.77 E-value=0.00049 Score=53.60 Aligned_cols=90 Identities=10% Similarity=0.079 Sum_probs=71.8
Q ss_pred ceEEEEEEecCCCCccCCceeEEEEecCCCCeEEecCCCCCCCCCccCccccceee-ecCCcccccEEEEEEeCC-----
Q 029380 46 CTYLVVIKTSCDSKNFTRDRISIAFGDAYGNQIYAPRLDDPFTKTFQSCSSDGFQI-DGPCATDICYVYLHRSGL----- 119 (194)
Q Consensus 46 C~YtV~IkTsC~s~a~T~d~ISl~FgDa~Gn~V~v~~Ld~p~~~~FErCs~DtF~v-~GpCl~~IC~lyL~r~G~----- 119 (194)
+.|.|+|.||-...++|++.|.|.+.-..|+.=.+ .|.++ .||++++|+|-+ .-..++++-.|.+.++.+
T Consensus 1 ~hY~vtV~~~~~~~agt~~~v~v~L~G~~g~s~~~-~l~~~---~~~~g~~~sfli~t~~~lG~l~~v~~~~dn~~~~~~ 76 (120)
T cd01755 1 WHYQVKVHLSGKKNLEVDGTFTVSLYGTKGETEQL-PIVLG---ELKPNKTYSFLIDTEVDIGDLLKVKFKWENNVINSN 76 (120)
T ss_pred CEEEEEEEEeCccccCcCccEEEEEEcCCCCcccE-EEeCC---cccCCCEEEEEEEcCCCccceEEEEEEEcCCCcccc
Confidence 36999999999999999999999999888876444 23333 489999999999 667889999999999844
Q ss_pred -----CCceecEEEEe-cCCCCceeE
Q 029380 120 -----DGWEPESVKII-SPNSSPVTY 139 (194)
Q Consensus 120 -----dGW~pe~V~V~-~~~~~~vtF 139 (194)
+.|+.+.|.|. +...+..+|
T Consensus 77 ~~~~~p~~~~~~I~Vq~get~~~~~F 102 (120)
T cd01755 77 SGETLPKLGARKIRVKSGETQKKFTF 102 (120)
T ss_pred cccCCCcEEEEEEEEEECCCCCEEEE
Confidence 48889999996 444443444
No 12
>cd01758 PLAT_LPL PLAT/ LH2 domain present in lipoprotein lipase (LPL). LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs) and has therefeore has a profound influence on triglyceride and high-density lipoprotein (HDL) cholesterol levels in the blood. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=96.61 E-value=0.026 Score=45.67 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=62.5
Q ss_pred ceEEEEEEecCCCCcc-CCceeEEEEecCCCCeEEecCCCCCCCCCccCccccceee-ecCCcccccEEEEEEeCCCCce
Q 029380 46 CTYLVVIKTSCDSKNF-TRDRISIAFGDAYGNQIYAPRLDDPFTKTFQSCSSDGFQI-DGPCATDICYVYLHRSGLDGWE 123 (194)
Q Consensus 46 C~YtV~IkTsC~s~a~-T~d~ISl~FgDa~Gn~V~v~~Ld~p~~~~FErCs~DtF~v-~GpCl~~IC~lyL~r~G~dGW~ 123 (194)
+.|.|.|.||-...++ |+..|.|++.-..|+.=.+ .|.+| +.+|++++|+|-| .-..++++-.|.+...+..||.
T Consensus 1 yhYqVtV~~~~~~~~~~t~~~v~i~L~G~~g~S~~~-~l~~~--~~~~~G~t~sfLi~t~~dlG~L~~vk~~W~~n~~~~ 77 (137)
T cd01758 1 FHYQLKIHFFNQTNRIETDPTFTISLYGTLGESENL-PLTLP--EGITGNKTNSFLITTEKDIGDLLMLKLKWEGSSLWS 77 (137)
T ss_pred CeEEEEEEEecccCCCcccceEEEEEEcCCCcccCE-EEecC--cccCCCCeEEEEEECCCCcCCEEEEEEEEeCCCCCC
Confidence 4699999999988888 9999999999888776544 23334 4579999999999 6788899999999666665666
Q ss_pred ecE
Q 029380 124 PES 126 (194)
Q Consensus 124 pe~ 126 (194)
|-|
T Consensus 78 ~sW 80 (137)
T cd01758 78 NSW 80 (137)
T ss_pred hhh
Confidence 554
No 13
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=76.72 E-value=3.9 Score=34.70 Aligned_cols=65 Identities=22% Similarity=0.251 Sum_probs=38.6
Q ss_pred CchhhhhHHHHHHHHHHHhhhcccccCcccccccccccccc-ccCCceEEEEEEecCCCCccCCceeEEEEec
Q 029380 1 MKIKLAAHFLLLLAFSAFMLSEAETQLKPHAIESFTVNYIQ-KFGNCTYLVVIKTSCDSKNFTRDRISIAFGD 72 (194)
Q Consensus 1 ~~~~~~~h~ll~la~~~~~~s~a~~~~~Pq~~~s~~~~~~q-~~~~C~YtV~IkTsC~s~a~T~d~ISl~FgD 72 (194)
|+|+ ..-++.|+|++.++.+++.++.--|=. +.++-..+ +-.+|.-+ =|.-+.||+..|+|.|--
T Consensus 1 m~ms-~~~~v~l~alls~a~aq~~~t~~k~C~-ss~g~~~~V~i~~C~t~-----pC~lkKgt~~si~I~F~~ 66 (158)
T KOG4063|consen 1 MMMS-FLKTVILLALLSLAAAQAISTGVKQCG-SSDGTPLEVKIDGCPTT-----PCQLKKGTEASIQIDFAP 66 (158)
T ss_pred CchH-HHHHHHHHHHHHHhhhcccCccccccc-CCCCcceEEEecCCCCC-----ceEEecCCeEEEEEEEee
Confidence 7788 344555666666666665443111111 11222221 24688754 899999999999999963
No 14
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=39.60 E-value=26 Score=26.90 Aligned_cols=18 Identities=33% Similarity=0.133 Sum_probs=9.0
Q ss_pred CchhhhhHHHHHHHHHHH
Q 029380 1 MKIKLAAHFLLLLAFSAF 18 (194)
Q Consensus 1 ~~~~~~~h~ll~la~~~~ 18 (194)
|-+|...=+.|+||.+++
T Consensus 1 MaSK~~llL~l~LA~lLl 18 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLL 18 (95)
T ss_pred CchhHHHHHHHHHHHHHH
Confidence 778843333344444443
No 15
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=39.51 E-value=29 Score=25.63 Aligned_cols=21 Identities=38% Similarity=0.341 Sum_probs=16.2
Q ss_pred CchhhhhHHHHHHHHHHHhhh
Q 029380 1 MKIKLAAHFLLLLAFSAFMLS 21 (194)
Q Consensus 1 ~~~~~~~h~ll~la~~~~~~s 21 (194)
|-.|+.+--|||+|++.+..+
T Consensus 1 MA~Kl~vialLC~aLva~vQ~ 21 (65)
T PF10731_consen 1 MASKLIVIALLCVALVAIVQS 21 (65)
T ss_pred CcchhhHHHHHHHHHHHHHhc
Confidence 778888888899988885444
No 16
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=38.44 E-value=81 Score=26.80 Aligned_cols=35 Identities=34% Similarity=0.440 Sum_probs=27.0
Q ss_pred cCCceEEEEEE-ecCCCCccCCceeEEEEecCCCCeEEe
Q 029380 43 FGNCTYLVVIK-TSCDSKNFTRDRISIAFGDAYGNQIYA 80 (194)
Q Consensus 43 ~~~C~YtV~Ik-TsC~s~a~T~d~ISl~FgDa~Gn~V~v 80 (194)
++.=+||++|| ||..+.+.+.+.|.+.. +||.++.
T Consensus 67 ~g~~t~t~yiKNtG~~~~~fd~~sitVli---DG~iv~~ 102 (154)
T COG3354 67 DGPYTYTFYIKNTGSDSIAFDNTSITVLI---DGNIVTP 102 (154)
T ss_pred CCceEEEEEEecCCCcccccCCCeEEEEE---cCcEecc
Confidence 35678999999 88899999999888764 4555553
No 17
>COG3543 Uncharacterized conserved protein [Function unknown]
Probab=29.91 E-value=16 Score=30.34 Aligned_cols=14 Identities=43% Similarity=0.731 Sum_probs=12.3
Q ss_pred CchhhhhHHHHHHH
Q 029380 1 MKIKLAAHFLLLLA 14 (194)
Q Consensus 1 ~~~~~~~h~ll~la 14 (194)
|.+|+-+|+|||+-
T Consensus 1 ~~l~LR~HHLlCmq 14 (135)
T COG3543 1 MTLRLRAHHLLCMQ 14 (135)
T ss_pred Ccceecchhhheee
Confidence 77899999999983
No 18
>smart00606 CBD_IV Cellulose Binding Domain Type IV.
Probab=28.83 E-value=2.5e+02 Score=20.94 Aligned_cols=75 Identities=15% Similarity=0.217 Sum_probs=41.5
Q ss_pred ceEEEEEEecCCCCccCCceeEEEEecCCCCeEEecCCCCCC-CCCccCccccceeeecCCcccccEEEEEEeCCCCcee
Q 029380 46 CTYLVVIKTSCDSKNFTRDRISIAFGDAYGNQIYAPRLDDPF-TKTFQSCSSDGFQIDGPCATDICYVYLHRSGLDGWEP 124 (194)
Q Consensus 46 C~YtV~IkTsC~s~a~T~d~ISl~FgDa~Gn~V~v~~Ld~p~-~~~FErCs~DtF~v~GpCl~~IC~lyL~r~G~dGW~p 124 (194)
=.|+|.++-+-..+ ...|.|++.+..|..+---.++..+ .+.|+.-+. ++..+ ...=.||+.-.|.++|..
T Consensus 53 g~~~i~~~~as~~~---~~~i~v~~d~~~G~~~~~~~~p~tg~~~~~~~~~~---~v~~~--~G~~~l~~~~~~~~~~~l 124 (129)
T smart00606 53 GAYTFTARVASGNA---GGSIELRLDSPTGTLVGTVDVPSTGGWQTYQTVSA---TVTLP--AGVHDVYLVFKGGNYFNI 124 (129)
T ss_pred CceEEEEEEeCCCC---CceEEEEECCCCCcEEEEEEeCCCCCCccCEEEEE---EEccC--CceEEEEEEEECCCcEEE
Confidence 46777777633322 2388999988888776654454332 234433222 23222 223346666666655877
Q ss_pred cEEE
Q 029380 125 ESVK 128 (194)
Q Consensus 125 e~V~ 128 (194)
+|++
T Consensus 125 d~~~ 128 (129)
T smart00606 125 DWFR 128 (129)
T ss_pred EEEE
Confidence 7765
No 19
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.27 E-value=2.3e+02 Score=25.23 Aligned_cols=57 Identities=14% Similarity=0.271 Sum_probs=36.3
Q ss_pred cCCceEEEEEEecCCCCccCCceeEEEEecCCCCeEEecCCCCCCCCCccCccccceeeecCCcccccEEE
Q 029380 43 FGNCTYLVVIKTSCDSKNFTRDRISIAFGDAYGNQIYAPRLDDPFTKTFQSCSSDGFQIDGPCATDICYVY 113 (194)
Q Consensus 43 ~~~C~YtV~IkTsC~s~a~T~d~ISl~FgDa~Gn~V~v~~Ld~p~~~~FErCs~DtF~v~GpCl~~IC~ly 113 (194)
+..++|.-.|.|| -.=.|+...-|++|+.||-. ....++.| .|...+.=.|..|.-+
T Consensus 44 ~~~~~~~fqV~tG------G~fDVD~~I~aPdgkvI~~~--~kk~~~~~------~f~ae~~G~Y~fCFsN 100 (209)
T KOG1693|consen 44 DDTTSFEFQVQTG------GHFDVDYDIEAPDGKVIYSE--KKKRYDSF------LFKAEGKGEYTFCFSN 100 (209)
T ss_pred CceEEEEEEEEeC------CceeeEEEEECCCCCEEeec--cccccccE------EEEEecceEEEEEecC
Confidence 3446777777777 34579999999999999853 22333333 3444444456777644
No 20
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=26.60 E-value=20 Score=26.60 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=16.9
Q ss_pred Cccccc--ccccccccc-------ccCCceEEEEEE
Q 029380 27 LKPHAI--ESFTVNYIQ-------KFGNCTYLVVIK 53 (194)
Q Consensus 27 ~~Pq~~--~s~~~~~~q-------~~~~C~YtV~Ik 53 (194)
..|+-. .|.+.+++- ...+-+|+|..+
T Consensus 23 p~P~nv~~~s~nf~~iL~W~~~~~~~~~~~ytVq~~ 58 (107)
T PF01108_consen 23 PAPQNVTVDSVNFKHILRWDPGPGSPPNVTYTVQYK 58 (107)
T ss_dssp SSCEEEEEEEETTEEEEEEEESTTSSSTEEEEEEEE
T ss_pred CCCCeeEEEEECCceEEEeCCCCCCCCCeEEEEEEE
Confidence 455543 255555443 146899999999
No 21
>PF10295 DUF2406: Uncharacterised protein (DUF2406); InterPro: IPR018809 This entry represents a family of small proteins conserved in fungi. The function is not known.
Probab=22.55 E-value=52 Score=24.49 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=21.3
Q ss_pred ecCCCCeEEecCCCCCCCCCccC
Q 029380 71 GDAYGNQIYAPRLDDPFTKTFQS 93 (194)
Q Consensus 71 gDa~Gn~V~v~~Ld~p~~~~FEr 93 (194)
-|.+||.|-.|.+-+|-...|||
T Consensus 33 kD~fG~~I~~PD~SNPTR~R~ER 55 (69)
T PF10295_consen 33 KDIFGNPITDPDRSNPTRSRDER 55 (69)
T ss_pred cccCCCccCCCCCCCCCcccccC
Confidence 89999999999999998878988
No 22
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=20.35 E-value=1.5e+02 Score=24.44 Aligned_cols=53 Identities=15% Similarity=0.293 Sum_probs=33.1
Q ss_pred cCCceeEEEEecCCCCeEEecCCCCCCCCCccCccc-cceeeecCCcc----cccEEEEE
Q 029380 61 FTRDRISIAFGDAYGNQIYAPRLDDPFTKTFQSCSS-DGFQIDGPCAT----DICYVYLH 115 (194)
Q Consensus 61 ~T~d~ISl~FgDa~Gn~V~v~~Ld~p~~~~FErCs~-DtF~v~GpCl~----~IC~lyL~ 115 (194)
-+...|.|.|-|.+|...-+. -.++..-+|.-.. ..-.+.++|.+ .-|++++.
T Consensus 31 ~~~g~v~I~~~~~dG~~~~v~--~~~G~sLLeal~~~~~i~i~~~CGG~g~CgtC~V~V~ 88 (143)
T PTZ00490 31 STPGKVKVCVKKRDGTHCDVE--VPVGMSLMHALRDVAKLDVEGTCNGCMQCATCHVYLS 88 (143)
T ss_pred cCCCcEEEEEEcCCCCEEEEE--ECCCccHHHHHHHcCCCCccccCCCCCEeCCCEEEEC
Confidence 466789999999999654442 1233333443322 12456778884 58999994
Done!