BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029382
         (194 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3N0U|A Chain A, Crystal Structure Of Tm1821, The 8-Oxoguanine Dna
           Glycosylase Of Thermotoga Maritima
 pdb|3N0U|B Chain B, Crystal Structure Of Tm1821, The 8-Oxoguanine Dna
           Glycosylase Of Thermotoga Maritima
 pdb|3N0U|C Chain C, Crystal Structure Of Tm1821, The 8-Oxoguanine Dna
           Glycosylase Of Thermotoga Maritima
          Length = 219

 Score = 28.1 bits (61), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 167 GENGNDRCRWCHYMSCVPTSSWNCEGNV 194
           GE G +   +C    CV T++W+ EG +
Sbjct: 42  GEEGTEEDLFCELSFCVLTANWSAEGGI 69


>pdb|1AUV|A Chain A, Structure Of The C Domain Of Synapsin Ia From Bovine Brain
 pdb|1AUV|B Chain B, Structure Of The C Domain Of Synapsin Ia From Bovine Brain
          Length = 311

 Score = 26.9 bits (58), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 130 GSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGND 172
           GSA ++    + +Y LW+ +   +  GL +  V    G++G D
Sbjct: 231 GSAXLEQIAXSDRYKLWVDTCSEIFGGLDICAVEALHGKDGRD 273


>pdb|2P0A|A Chain A, The Crystal Structure Of Human Synapsin Iii (Syn3) In
           Complex With Amppnp
 pdb|2P0A|B Chain B, The Crystal Structure Of Human Synapsin Iii (Syn3) In
           Complex With Amppnp
          Length = 344

 Score = 26.6 bits (57), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 130 GSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGND 172
           GSA ++    T +Y LW+ S   +  GL +  V     ++G D
Sbjct: 246 GSAMLEQVAMTERYRLWVDSCSEMFGGLDICAVKAVHSKDGRD 288


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.143    0.483 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,443,811
Number of Sequences: 62578
Number of extensions: 124498
Number of successful extensions: 204
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 198
Number of HSP's gapped (non-prelim): 6
length of query: 194
length of database: 14,973,337
effective HSP length: 94
effective length of query: 100
effective length of database: 9,091,005
effective search space: 909100500
effective search space used: 909100500
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)