Query 029382
Match_columns 194
No_of_seqs 204 out of 1400
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 19:43:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029382.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029382hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xov_A Rhomboid protease GLPG; 99.8 1.5E-19 5E-24 143.0 12.7 115 1-116 65-180 (181)
2 2nr9_A Protein GLPG homolog; i 99.8 1.8E-20 6.1E-25 150.0 3.4 116 1-117 70-186 (196)
3 2hgo_A CASSIICOLIN; toxin, dis 33.9 6.1 0.00021 20.2 -0.6 14 180-193 4-17 (27)
4 1nj3_A NPL4; NZF domain, rubre 31.7 22 0.00074 18.8 1.4 13 169-181 4-16 (31)
5 2hlg_A Fruit-specific protein; 24.7 16 0.00054 20.6 0.0 8 172-179 16-23 (39)
6 1qk7_A Selenocosmia huwena lec 22.9 30 0.001 18.8 0.9 18 170-190 9-26 (32)
7 1d1h_A Hanatoxin type 1; cysti 20.7 25 0.00084 19.5 0.3 19 169-190 10-28 (35)
8 2crc_A Ubiquitin conjugating e 20.0 61 0.0021 19.5 2.0 20 170-191 9-28 (52)
9 1koz_A Voltage-dependent chann 19.7 41 0.0014 18.8 1.1 24 165-190 6-30 (36)
10 1nix_A Hainantoxin-I; inhibito 19.5 32 0.0011 18.9 0.6 17 171-190 13-29 (34)
No 1
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.82 E-value=1.5e-19 Score=142.96 Aligned_cols=115 Identities=22% Similarity=0.202 Sum_probs=84.6
Q ss_pred ChhHHHHhHHHHHhhchHHHHHHHHHHHHHHHHHHHhhccCCceeccchhHHHHHHHHHHHHhhhhhh-hhhHHHHHHHH
Q 029382 1 MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLSELLTNWSL-YTNKAAALITL 79 (194)
Q Consensus 1 m~~L~~~G~~lE~~~G~~r~l~iyl~sGi~G~l~s~~~~~~~~~vGASGai~Gl~ga~l~~~~~~~~~-~~~~~~~l~~~ 79 (194)
|+.++.+|..+|+.+|++|++.+|+.+|+.|++.+.++.++. ++||||+++|++++.++.-..+.+. ...+.+.....
T Consensus 65 m~~l~~~g~~~E~~~G~~~fl~~yl~~~i~~~l~~~~~~~~~-~vGaSGai~gl~g~~~~~~~~~p~~~~~l~~~~~~~~ 143 (181)
T 2xov_A 65 LLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPW-FGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFA 143 (181)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSC-CCCSHHHHHHHHHHHHHHHHHCGGGSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCC-ceeHHHHHHHHHHHHHHHHhhCcCceeeeHHHHHHHH
Confidence 578999999999999999999999999999999999887654 9999999999999886432222111 11122322233
Q ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHhc
Q 029382 80 LVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLP 116 (194)
Q Consensus 80 ~~~~~~~~~~~~~~~i~~~aHlgG~l~G~l~g~~l~~ 116 (194)
.++++.++...+.+++||+||+||+++|++++..+.+
T Consensus 144 ~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~ 180 (181)
T 2xov_A 144 LIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVDSL 180 (181)
T ss_dssp HHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHhc
Confidence 3333333322123689999999999999999987753
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.79 E-value=1.8e-20 Score=150.01 Aligned_cols=116 Identities=22% Similarity=0.342 Sum_probs=83.9
Q ss_pred ChhHHHHhHHHHHhhchHHHHHHHHHHHHHHHHHHHhhccCCceeccchhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 029382 1 MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLSELLTNWSLYTNKAAALITLL 80 (194)
Q Consensus 1 m~~L~~~G~~lE~~~G~~r~l~iyl~sGi~G~l~s~~~~~~~~~vGASGai~Gl~ga~l~~~~~~~~~~~~~~~~l~~~~ 80 (194)
|+.++.+|..+|+.+|++|++.+|+++|++|++.+.++.++. ++||||++||++++.+..-..+.+....+.+......
T Consensus 70 m~~l~~~G~~lE~~~G~~~~l~~yl~~~~~~~l~~~~~~~~~-~vGaSGai~gl~g~~~~~~~~~~~~~~~~~~~~~~~~ 148 (196)
T 2nr9_A 70 LSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPA-FFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLL 148 (196)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSC-CCCSHHHHHHHHHHHHHHHHSSTTSCCCCCSSTTTTT
T ss_pred HHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHhcCCC-eeeHHHHHHHHHHHHHHHHHhcchhhcchHHHHHHHH
Confidence 678999999999999999999999999999999999887654 9999999999999876532222211111111111122
Q ss_pred HHHHHHHHHh-hCCchhHHHHHHHHHHHHHHHHHHhcC
Q 029382 81 VIIAINLAIG-ILPHVDNFAHIGGFLTGFFLGFVLLPR 117 (194)
Q Consensus 81 ~~~~~~~~~~-~~~~i~~~aHlgG~l~G~l~g~~l~~~ 117 (194)
+.++.++... ..+++||+||+||+++|++++..+.++
T Consensus 149 ~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~~ 186 (196)
T 2nr9_A 149 VGIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSKL 186 (196)
T ss_dssp TTTTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 2222332211 124899999999999999999988753
No 3
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=33.95 E-value=6.1 Score=20.22 Aligned_cols=14 Identities=36% Similarity=0.581 Sum_probs=11.2
Q ss_pred cccccCCCCCCCCC
Q 029382 180 MSCVPTSSWNCEGN 193 (194)
Q Consensus 180 ~~C~p~~~~~C~~~ 193 (194)
.+|+++.+.+|.+|
T Consensus 4 vscv~fgngfcgdn 17 (27)
T 2hgo_A 4 VSCVNFGNGFCGDN 17 (27)
T ss_dssp CSCEEETTTEEECS
T ss_pred eEeEeecCccccCC
Confidence 57888888888775
No 4
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=31.66 E-value=22 Score=18.76 Aligned_cols=13 Identities=23% Similarity=0.695 Sum_probs=10.3
Q ss_pred CCCCCCCcccccc
Q 029382 169 NGNDRCRWCHYMS 181 (194)
Q Consensus 169 ~~~~~C~~c~y~~ 181 (194)
.+...|+-|.|+|
T Consensus 4 ~~~W~C~~CTf~N 16 (31)
T 1nj3_A 4 SAMWACQHCTFMN 16 (31)
T ss_dssp SCCEECSSSCCEE
T ss_pred CccccCCcccccC
Confidence 3456799999997
No 5
>2hlg_A Fruit-specific protein; beta antiparallel, plant protein; NMR {Lycopersicon esculentum}
Probab=24.67 E-value=16 Score=20.55 Aligned_cols=8 Identities=25% Similarity=0.991 Sum_probs=6.4
Q ss_pred CCCCcccc
Q 029382 172 DRCRWCHY 179 (194)
Q Consensus 172 ~~C~~c~y 179 (194)
.-|+||+-
T Consensus 16 TlC~wCK~ 23 (39)
T 2hlg_A 16 TLCQFCKE 23 (39)
T ss_dssp SSCCEEEE
T ss_pred Eeccccee
Confidence 47999984
No 6
>1qk7_A Selenocosmia huwena lectin-I; SHL-I, cystine knot; NMR {Selenocosmia huwena} SCOP: g.3.6.2
Probab=22.86 E-value=30 Score=18.79 Aligned_cols=18 Identities=39% Similarity=0.984 Sum_probs=14.5
Q ss_pred CCCCCCcccccccccCCCCCC
Q 029382 170 GNDRCRWCHYMSCVPTSSWNC 190 (194)
Q Consensus 170 ~~~~C~~c~y~~C~p~~~~~C 190 (194)
.+++| |+.+.|-|..+| |
T Consensus 9 ~~~~C--C~~~~Cs~~~kW-C 26 (32)
T 1qk7_A 9 YNNGC--CSGYVCSRTWKW-C 26 (32)
T ss_dssp SSCCC--CTTEEECSSSCB-E
T ss_pred CCCCc--CCCceeCCCCCe-e
Confidence 45678 999999988887 5
No 7
>1d1h_A Hanatoxin type 1; cystine knot; NMR {Grammostola rosea} SCOP: g.3.6.2 PDB: 1la4_A 2a2v_A
Probab=20.71 E-value=25 Score=19.53 Aligned_cols=19 Identities=21% Similarity=0.824 Sum_probs=14.6
Q ss_pred CCCCCCCcccccccccCCCCCC
Q 029382 169 NGNDRCRWCHYMSCVPTSSWNC 190 (194)
Q Consensus 169 ~~~~~C~~c~y~~C~p~~~~~C 190 (194)
+++++| |+.+.|-+..+| |
T Consensus 10 ~~~~~C--C~~l~Cs~~~~w-C 28 (35)
T 1d1h_A 10 KTTSDC--CKHLGCKFRDKY-C 28 (35)
T ss_dssp SSGGGB--CSSEEECTTTCS-E
T ss_pred CCCccc--CCCCeeCCCCCc-e
Confidence 345678 999999988777 5
No 8
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=20.00 E-value=61 Score=19.52 Aligned_cols=20 Identities=20% Similarity=0.517 Sum_probs=12.8
Q ss_pred CCCCCCcccccccccCCCCCCC
Q 029382 170 GNDRCRWCHYMSCVPTSSWNCE 191 (194)
Q Consensus 170 ~~~~C~~c~y~~C~p~~~~~C~ 191 (194)
+...|+-|.|+| +...-.||
T Consensus 9 ~~W~Cp~CTf~N--~p~~~~Ce 28 (52)
T 2crc_A 9 VGWQCPGCTFIN--KPTRPGCE 28 (52)
T ss_dssp SSBCCTTTCCCB--CTTCSSCS
T ss_pred CCccCCCccccc--CCCCCeeC
Confidence 356799999997 33333454
No 9
>1koz_A Voltage-dependent channel inhibitor; toxin, cystine knot; NMR {Synthetic} SCOP: g.3.6.2
Probab=19.74 E-value=41 Score=18.81 Aligned_cols=24 Identities=17% Similarity=0.481 Sum_probs=16.0
Q ss_pred hccCCCCCCCCcccccccccCC-CCCC
Q 029382 165 FRGENGNDRCRWCHYMSCVPTS-SWNC 190 (194)
Q Consensus 165 ~~~~~~~~~C~~c~y~~C~p~~-~~~C 190 (194)
+.+-+++++| |+++.|-..- .|.|
T Consensus 6 ~g~C~~~~dC--C~hl~C~~~~~~w~C 30 (36)
T 1koz_A 6 WGKCSQTSDC--CPHLACKSKWPRNIC 30 (36)
T ss_dssp SCBCCSSSSS--CTTEESCCSSSSSBC
T ss_pred ccCCCCcccc--cCCceecCCCCCcee
Confidence 3344556788 9999997554 5535
No 10
>1nix_A Hainantoxin-I; inhibitor cystine knot motif; NMR {Ornithoctonus hainana} SCOP: g.3.6.2 PDB: 2jtb_A
Probab=19.48 E-value=32 Score=18.95 Aligned_cols=17 Identities=29% Similarity=1.153 Sum_probs=13.5
Q ss_pred CCCCCcccccccccCCCCCC
Q 029382 171 NDRCRWCHYMSCVPTSSWNC 190 (194)
Q Consensus 171 ~~~C~~c~y~~C~p~~~~~C 190 (194)
++.| |+.+.|-|...| |
T Consensus 13 ~~~C--C~~~~Cs~~~kW-C 29 (34)
T 1nix_A 13 KNEC--CSGYACNSRDKW-C 29 (34)
T ss_dssp TTCB--CTTEEECSSSSB-E
T ss_pred CCCc--CCCCeeCCCCCE-e
Confidence 3458 999999988887 5
Done!