BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029383
(194 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LET0|BH107_ARATH Putative transcription factor bHLH107 OS=Arabidopsis thaliana
GN=BHLH107 PE=2 SV=1
Length = 230
Score = 136 bits (343), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 110/166 (66%), Gaps = 5/166 (3%)
Query: 1 MVALKNHSEAERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELKTNAIEASK 60
+ +L+NH EAER+RR RIN+HL+ LR L+ N K DK+TLLA+V+++VKELK +E +
Sbjct: 43 LASLRNHKEAERKRRARINSHLNKLRKLLSCNSKTDKSTLLAKVVQRVKELKQQTLEITD 102
Query: 61 GFLIPTDADEVKVEPYNDEEAG-DADFLYKASICCEYRPELMSDLRQALDALPLKMLKAE 119
IP++ DE+ V D G D ++K S CCE RPEL+ DL + L +L ++ L A+
Sbjct: 103 E-TIPSETDEISVLNIEDCSRGDDRRIIFKVSFCCEDRPELLKDLMETLKSLQMETLFAD 161
Query: 120 ISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKASPS 165
++T+GGR +NV+V + KE + S N +Q AL S+LE++S S
Sbjct: 162 MTTVGGRTRNVLVVAADKEHHGVQS---VNFLQNALKSLLERSSKS 204
>sp|Q9S7Y1|BH030_ARATH Transcription factor bHLH30 OS=Arabidopsis thaliana GN=BHLH30 PE=1
SV=1
Length = 368
Score = 132 bits (333), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/183 (46%), Positives = 118/183 (64%), Gaps = 4/183 (2%)
Query: 1 MVALKNHSEAERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELKTNAIEASK 60
+ A K+HSEAERRRRERIN HL LR ++P K DKA+LLAEVI+ VKELK S+
Sbjct: 172 LAASKSHSEAERRRRERINNHLAKLRSILPNTTKTDKASLLAEVIQHVKELKRETSVISE 231
Query: 61 GFLIPTDADEVKVEPYNDEEAGDADFLYKASICCEYRPELMSDLRQALDALPLKMLKAEI 120
L+PT++DE+ V +EE GD F+ KAS+CCE R +L+ D+ + L A+ LK LKAEI
Sbjct: 232 TNLVPTESDELTVAFTEEEETGDGRFVIKASLCCEDRSDLLPDMIKTLKAMRLKTLKAEI 291
Query: 121 STLGGRLKNVIVFTSCKEGNAEASQTLA-NDVQQALNSVLEKASPSPEYSPRTTLPNKRQ 179
+T+GGR+KNV+ T + E + +++AL +V+EK++ S KRQ
Sbjct: 292 TTVGGRVKNVLFVTGEESSGEEVEEEYCIGTIEEALKAVMEKSNVEESSSSGNA---KRQ 348
Query: 180 RIS 182
R+S
Sbjct: 349 RMS 351
>sp|O80674|BH106_ARATH Transcription factor bHLH106 OS=Arabidopsis thaliana GN=BHLH106
PE=2 SV=1
Length = 253
Score = 123 bits (309), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 114/167 (68%), Gaps = 6/167 (3%)
Query: 1 MVALKNHSEAERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELKTNAIEASK 60
+ AL+NH EAERRRRERIN+HL+ LR ++ N K DKATLLA+V+++V+ELK +E S
Sbjct: 65 LAALRNHKEAERRRRERINSHLNKLRNVLSCNSKTDKATLLAKVVQRVRELKQQTLETSD 124
Query: 61 G--FLIPTDADEVKVEPYNDEEAGDADFLYKASICCEYRPELMSDLRQALDALPLKMLKA 118
L+P++ DE+ V + D + D ++KAS+CCE R +L+ DL + L +L +K L+A
Sbjct: 125 SDQTLLPSETDEISVLHFGD-YSNDGHIIFKASLCCEDRSDLLPDLMEILKSLNMKTLRA 183
Query: 119 EISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKASPS 165
E+ T+GGR ++V+V + KE + S + +Q AL S+LE++S S
Sbjct: 184 EMVTIGGRTRSVLVVAADKEMHGVES---VHFLQNALKSLLERSSKS 227
>sp|Q9XEF0|BH051_ARATH Transcription factor bHLH51 OS=Arabidopsis thaliana GN=BHLH51 PE=2
SV=1
Length = 254
Score = 120 bits (302), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 104/160 (65%), Gaps = 6/160 (3%)
Query: 5 KNHSEAERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELKTNAIEASKGFLI 64
++H AE+RRR+RIN+HL LR LVP + K+DKA LLA VI QVKELK A E+ +
Sbjct: 65 RSHRLAEKRRRDRINSHLTALRKLVPNSDKLDKAALLATVIEQVKELKQKAAESPIFQDL 124
Query: 65 PTDADEVKVEP--YNDEEAGDADFLYKASICCEYRPELMSDLRQALDALPLKMLKAEIST 122
PT+ADEV V+P +D E+ ++KAS CCE +PE +S++ + L L L+ ++AEI +
Sbjct: 125 PTEADEVTVQPETISDFESNTNTIIFKASFCCEDQPEAISEIIRVLTKLQLETIQAEIIS 184
Query: 123 LGGRLK-NVIVFTS-CKEGN--AEASQTLANDVQQALNSV 158
+GGR++ N I+ S C E A +++ L + ALN +
Sbjct: 185 VGGRMRINFILKDSNCNETTNIAASAKALKQSLCSALNRI 224
>sp|Q9LS08|BH032_ARATH Transcription factor AIG1 OS=Arabidopsis thaliana GN=BHLH32 PE=1
SV=1
Length = 344
Score = 115 bits (287), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/135 (48%), Positives = 95/135 (70%), Gaps = 4/135 (2%)
Query: 1 MVALKNHSEAERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELKTNAIEASK 60
+ A K+HSEAERRRRERIN HL LR ++P K DKA+LLAEVI+ +KELK + +
Sbjct: 130 LAASKSHSEAERRRRERINTHLAKLRSILPNTTKTDKASLLAEVIQHMKELKRQTSQITD 189
Query: 61 GFLIPTDADEVKVE-PYNDEEAGDADFLYKASICCEYRPELMSDLRQALDALPLKMLKAE 119
+ +PT+ D++ V+ YNDEE + + +AS CC+ R +LM D+ AL +L L+ LKAE
Sbjct: 190 TYQVPTECDDLTVDSSYNDEE---GNLVIRASFCCQDRTDLMHDVINALKSLRLRTLKAE 246
Query: 120 ISTLGGRLKNVIVFT 134
I+T+GGR+KN++ +
Sbjct: 247 IATVGGRVKNILFLS 261
>sp|P0CB25|BH131_ARATH Transcription factor bHLH131 OS=Arabidopsis thaliana GN=BHLH131
PE=2 SV=1
Length = 256
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 75/139 (53%), Gaps = 9/139 (6%)
Query: 2 VALKNHSEAERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELKTNAIEASKG 61
VA K HS+AERRRR RIN+ TLR ++P K DKA++L E +R ELK +
Sbjct: 91 VAAKKHSDAERRRRLRINSQFATLRTILPNLVKQDKASVLGETVRYFNELKKMVQDIPT- 149
Query: 62 FLIPTDADEVKVEPYNDEEAGDADFLYKASICCEYRPELMSDLRQALDALPLKMLKAEIS 121
P+ D ++++ N+ L + C R LMS++ +++ A+ K ++AEI
Sbjct: 150 --TPSLEDNLRLDHCNNNRD-----LARVVFSCSDREGLMSEVAESMKAVKAKAVRAEIM 202
Query: 122 TLGGRLKNVIVFTSCKEGN 140
T+GGR K +F GN
Sbjct: 203 TVGGRTK-CALFVQGVNGN 220
>sp|Q39204|RAP1_ARATH Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2
Length = 623
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 6 NHSEAERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELKTNAIEA-SKGFLI 64
NH EAER+RRE++N LR +VP KMDKA+LL + I + ELK+ ++ S+ I
Sbjct: 452 NHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAIAYINELKSKVVKTESEKLQI 511
Query: 65 PTDADEVKVE 74
+EVK+E
Sbjct: 512 KNQLEEVKLE 521
>sp|Q9FIP9|ATR2_ARATH Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1
Length = 592
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 34/48 (70%)
Query: 6 NHSEAERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELKT 53
NH EAER+RRE++N +LR +VP KMDKA+LL + I + ELK+
Sbjct: 415 NHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYINELKS 462
>sp|O49687|BH004_ARATH Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2
SV=1
Length = 589
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 34/48 (70%)
Query: 6 NHSEAERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELKT 53
NH EAER+RRE++N +LR +VP KMDKA+LL + I + ELK+
Sbjct: 416 NHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYISELKS 463
>sp|Q9ZPY8|AIB_ARATH Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis
thaliana GN=AIB PE=2 SV=2
Length = 566
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 6 NHSEAERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELK 52
NH EAER+RRE++N LR +VP KMDKA+LL + I +KEL+
Sbjct: 395 NHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAISYIKELQ 441
>sp|Q9ZVX2|AMS_ARATH Transcription factor ABORTED MICROSPORES OS=Arabidopsis thaliana
GN=AMS PE=1 SV=2
Length = 571
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 71/168 (42%), Gaps = 48/168 (28%)
Query: 10 AERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELKTNAIE------------ 57
AERRRR+++N L LR LVP K+D+A++L + I VKEL+ A E
Sbjct: 318 AERRRRKKLNDRLYALRSLVPRITKLDRASILGDAINYVKELQNEAKELQDELEENSETE 377
Query: 58 ---------------ASKGFL--------IPTDADEVKVEPYNDE-----------EAGD 83
GF +P+ +V +E ND+ +
Sbjct: 378 DGSNRPQGGMSLNGTVVTGFHPGLSCNSNVPSVKQDVDLENSNDKGQEMEPQVDVAQLDG 437
Query: 84 ADFLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVI 131
+F K + CEY+P + L +ALD+L L++ A + + NV
Sbjct: 438 REFFVK--VICEYKPGGFTRLMEALDSLGLEVTNANTTRYLSLVSNVF 483
>sp|O23487|BH003_ARATH Transcription factor bHLH3 OS=Arabidopsis thaliana GN=BHLH3 PE=2
SV=1
Length = 467
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 6 NHSEAERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELK 52
NH EAER+RRE++N LR +VP KMDKA+LLA+ I + +++
Sbjct: 320 NHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLADAITYITDMQ 366
>sp|Q9LNJ5|BH013_ARATH Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2
SV=1
Length = 590
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 6 NHSEAERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKEL--KTNAIEASK 60
NH EAER+RRE++N LR +VP KMDKA+LL + + + EL K +EA +
Sbjct: 433 NHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAVSYINELHAKLKVMEAER 489
>sp|Q8GZ38|UNE10_ARATH Transcription factor UNE10 OS=Arabidopsis thaliana GN=UNE10 PE=2
SV=1
Length = 399
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 36/46 (78%)
Query: 7 HSEAERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELK 52
H+++ER+RR++IN + TL+ LVP + K DKA++L EVI +K+L+
Sbjct: 218 HNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQ 263
>sp|Q9LUK7|BH028_ARATH Transcription factor bHLH28 OS=Arabidopsis thaliana GN=BHLH28 PE=2
SV=1
Length = 511
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 6 NHSEAERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELKTNA 55
NH EAER RRE++N LR +VP KMDK +LL + + + ELK+ A
Sbjct: 343 NHVEAERMRREKLNHRFYALRAVVPNVSKMDKTSLLEDAVCYINELKSKA 392
>sp|Q9LSE2|ICE1_ARATH Transcription factor ICE1 OS=Arabidopsis thaliana GN=SCRM PE=1 SV=1
Length = 494
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 69/162 (42%), Gaps = 32/162 (19%)
Query: 10 AERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELKT------NAIEAS-KGF 62
AERRRR+++N L LR +VP KMD+A++L + I +KEL N +E++ G
Sbjct: 311 AERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPGS 370
Query: 63 LIPTDADEVKVEPYND-------EEAGDADF------------------LYKASICCEYR 97
L PT + + P EE + + C R
Sbjct: 371 LPPTSSSFHPLTPTPQTLSCRVKEELCPSSLPSPKGQQARVEVRLREGRAVNIHMFCGRR 430
Query: 98 PELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEG 139
P L+ +ALD L L + +A IS G +V C+EG
Sbjct: 431 PGLLLATMKALDNLGLDVQQAVISCFNGFALDVFRAEQCQEG 472
>sp|Q2HIV9|BH035_ARATH Transcription factor bHLH35 OS=Arabidopsis thaliana GN=BHLH35 PE=2
SV=1
Length = 248
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 85/187 (45%), Gaps = 35/187 (18%)
Query: 10 AERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIR--------------QVKELKT-- 53
+ER RR+++N L LR +VP KMDKA+++ + I +++EL++
Sbjct: 59 SERNRRQKLNQRLFALRSVVPNITKMDKASIIKDAISYIEGLQYEEKKLEAEIRELESTP 118
Query: 54 -NAIEASKGF----LIPTDADEVK----------VEPYNDEEAGDADFLYKASICCEYRP 98
+++ SK F L+P + ++K +E + + S+ C R
Sbjct: 119 KSSLSFSKDFDRDLLVPVTSKKMKQLDSGSSTSLIEVLELKVTFMGERTMVVSVTCNKRT 178
Query: 99 ELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSV 158
+ M L + ++L LK+L + +++ G +I T E + E + L ++ + +
Sbjct: 179 DTMVKLCEVFESLNLKILTSNLTSFSG----MIFHTVFIEADEEEQEVLRLKIETGIGAY 234
Query: 159 LEKASPS 165
E SP+
Sbjct: 235 NETQSPT 241
>sp|O23090|BH014_ARATH Transcription factor bHLH14 OS=Arabidopsis thaliana GN=BHLH14 PE=2
SV=1
Length = 423
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 36/51 (70%)
Query: 3 ALKNHSEAERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELKT 53
A+ +H EAE++RRE++N LR +VP +MDKA+LL++ + ++ LK+
Sbjct: 246 AVLSHVEAEKQRREKLNHRFYALRAIVPKVSRMDKASLLSDAVSYIESLKS 296
>sp|P13027|ARRS_MAIZE Anthocyanin regulatory R-S protein OS=Zea mays GN=R-S PE=2 SV=1
Length = 612
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 1 MVALKNHSEAERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELK 52
M A KNH +ER+RRE++N L+ L+P +++KA++LAE I +KEL+
Sbjct: 413 MSATKNHVMSERKRREKLNEMFLVLKSLLPSIHRVNKASILAETIAYLKELQ 464
>sp|Q9FT81|TT8_ARATH Transcription factor TT8 OS=Arabidopsis thaliana GN=TT8 PE=1 SV=2
Length = 518
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 6/120 (5%)
Query: 6 NHSEAERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELKTNAIEASKGFLIP 65
+H AERRRRE++N TLR +VP KMDK ++L + I V L+ E
Sbjct: 363 SHVVAERRRREKLNEKFITLRSMVPFVTKMDKVSILGDTIAYVNHLRKRVHELENTHHEQ 422
Query: 66 TDADEVKVEPYNDEEAG----DADFLYKASICCEYRPELMSDLRQALDALPLKMLKAEIS 121
+ EE + D L + + CEYR L+ D+ Q L L ++ S
Sbjct: 423 QHKRTRTCKRKTSEEVEVSIIENDVLLE--MRCEYRDGLLLDILQVLHELGIETTAVHTS 480
>sp|O80536|PIF3_ARATH Transcription factor PIF3 OS=Arabidopsis thaliana GN=PIF3 PE=1 SV=1
Length = 524
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 7 HSEAERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVK--ELKTNAIEASKGFLI 64
H+ +ERRRR+RIN + L+ L+P K+DKA++L E I +K +L+ + + G+ +
Sbjct: 348 HNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQVQIMSMASGYYL 407
Query: 65 P 65
P
Sbjct: 408 P 408
>sp|P13526|ARLC_MAIZE Anthocyanin regulatory Lc protein OS=Zea mays GN=LC PE=2 SV=1
Length = 610
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 34/48 (70%)
Query: 5 KNHSEAERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELK 52
KNH +ER+RRE++N L+ L+P +++KA++LAE I +KEL+
Sbjct: 415 KNHVMSERKRREKLNEMFLVLKSLLPSIHRVNKASILAETIAYLKELQ 462
>sp|Q8S3D5|BH069_ARATH Transcription factor bHLH69 OS=Arabidopsis thaliana GN=BHLH69 PE=2
SV=2
Length = 310
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 31/46 (67%)
Query: 7 HSEAERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELK 52
HS AER RRERI + +L+ LVP K DKA++L E+I VK L+
Sbjct: 141 HSIAERLRRERIAERMKSLQELVPNGNKTDKASMLDEIIDYVKFLQ 186
>sp|Q9LPW3|SCRM2_ARATH Transcription factor SCREAM2 OS=Arabidopsis thaliana GN=SCRM2 PE=1
SV=1
Length = 450
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 64/161 (39%), Gaps = 36/161 (22%)
Query: 10 AERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKEL--KTNAIEASKGFLIPTD 67
AERRRR+++N L LR +VP KMD+A++L + I +KEL + N + P+
Sbjct: 271 AERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHTELESTPPSS 330
Query: 68 ADEVKVEPYNDEEAGDADFLYKASIC------------------------------CEYR 97
+ + P + K +C C R
Sbjct: 331 SSLHPLTP----TPQTLSYRVKEELCPSSSLPSPKGQQPRVEVRLREGKAVNIHMFCGRR 386
Query: 98 PELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKE 138
P L+ +ALD L L + +A IS G +V C+E
Sbjct: 387 PGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQCQE 427
>sp|Q8S3F1|BH020_ARATH Transcription factor NAI1 OS=Arabidopsis thaliana GN=NAI1 PE=2 SV=1
Length = 320
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 4 LKNHSEAERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELK 52
LK H AER+RR+++N L L L+P K DKAT+L + I+ +K+L+
Sbjct: 130 LKEHVLAERKRRQKLNERLIALSALLPGLKKTDKATVLEDAIKHLKQLQ 178
>sp|Q9ZUG9|BH066_ARATH Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2
SV=1
Length = 350
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 30/46 (65%)
Query: 7 HSEAERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELK 52
HS AER RRERI + L+ LVP K DKA++L E+I VK L+
Sbjct: 149 HSIAERLRRERIAERMKALQELVPNGNKTDKASMLDEIIDYVKFLQ 194
>sp|Q9LSQ3|BH082_ARATH Transcription factor bHLH82 OS=Arabidopsis thaliana GN=BHLH82 PE=2
SV=1
Length = 297
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 7 HSEAERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELK 52
HS AER RRERI + +L+ LVP K DKA++L E+I V+ L+
Sbjct: 110 HSIAERLRRERIAERMKSLQELVPNTNKTDKASMLDEIIEYVRFLQ 155
>sp|Q9LSL1|BH093_ARATH Transcription factor bHLH93 OS=Arabidopsis thaliana GN=BHLH93 PE=1
SV=1
Length = 351
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 25/165 (15%)
Query: 10 AERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKEL---------------KTN 54
AERRRR+R+N L LR +VP KMD+ ++L + I +KEL +N
Sbjct: 182 AERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDAIDYMKELLDKINKLQDEEQELGNSN 241
Query: 55 AIEASKGF--LIPTDADE--VKVEPYNDEEAGDADFLYKASICCEYRPELMSDLRQALDA 110
SK F L +A+E V+ P + + D D + ICC +P L+ L+
Sbjct: 242 NSHHSKLFGDLKDLNANEPLVRNSPKFEIDRRDED--TRVDICCSPKPGLLLSTVNTLET 299
Query: 111 LPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQAL 155
L L++ + IS + + SC EG + + D++QAL
Sbjct: 300 LGLEIEQCVISC----FSDFSLQASCSEGAEQRDFITSEDIKQAL 340
>sp|Q9FUA4|SPT_ARATH Transcription factor SPATULA OS=Arabidopsis thaliana GN=SPT PE=1
SV=1
Length = 373
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 32/46 (69%)
Query: 7 HSEAERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELK 52
H+ +E+RRR RIN + L+ L+P + K DKA++L E I +K+L+
Sbjct: 202 HNLSEKRRRSRINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQ 247
>sp|Q7XHI7|BH127_ARATH Transcription factor bHLH127 OS=Arabidopsis thaliana GN=BHLH127
PE=2 SV=1
Length = 307
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 3 ALKNHSEAERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELK 52
A + H+ AERRRRE+IN + TL+ L+P K K ++L +VI VK L+
Sbjct: 151 AAEMHNLAERRRREKINERMKTLQQLIPRCNKSTKVSMLEDVIEYVKSLE 200
>sp|Q9CAD0|EGL1_ARATH Transcription factor EGL1 OS=Arabidopsis thaliana GN=BHLH2 PE=1
SV=1
Length = 596
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 33/47 (70%)
Query: 6 NHSEAERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELK 52
NH+ +E++RRE++N TLR ++P K+DK ++L + I +++L+
Sbjct: 405 NHALSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQ 451
>sp|Q0V7X4|FIT_ARATH Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION
FACTOR OS=Arabidopsis thaliana GN=FIT PE=1 SV=1
Length = 318
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 10 AERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELKTNA 55
+ERRRR R+ L LR LVP KMDKA+++ + + V+EL++ A
Sbjct: 135 SERRRRGRMKDKLYALRSLVPNITKMDKASIVGDAVLYVQELQSQA 180
>sp|Q9FN69|GL3_ARATH Transcription factor GLABRA 3 OS=Arabidopsis thaliana GN=GL3 PE=1
SV=1
Length = 637
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 32/47 (68%)
Query: 6 NHSEAERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELK 52
NH+ E++RRE++N TLR ++P K+DK ++L + I ++EL+
Sbjct: 441 NHAVLEKKRREKLNERFMTLRKIIPSINKIDKVSILDDTIEYLQELE 487
>sp|Q1PF17|BH018_ARATH Transcription factor bHLH18 OS=Arabidopsis thaliana GN=BHLH18 PE=2
SV=1
Length = 305
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 5 KNHSEAERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELK 52
++H AER+RRE++ L L+P KMDKA++L + I+ +K L+
Sbjct: 125 QDHILAERKRREKLTQRFVALSALIPGLKKMDKASVLGDAIKHIKYLQ 172
>sp|Q8LEG1|BH054_ARATH Transcription factor bHLH54 OS=Arabidopsis thaliana GN=BHLH54 PE=2
SV=1
Length = 258
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 12 RRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELK 52
R+RRE+IN L TL+ LVP K+D +T+L E + VK L+
Sbjct: 183 RKRREKINERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQ 223
>sp|Q3E7L7|BH139_ARATH Transcription factor bHLH139 OS=Arabidopsis thaliana GN=BHLH139
PE=4 SV=1
Length = 223
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 12 RRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELK 52
R+RRERIN L TL+ LVP K+D +T+L + + VK L+
Sbjct: 148 RKRRERINDRLKTLQSLVPNGTKVDISTMLEDAVHYVKFLQ 188
>sp|Q9T072|BH025_ARATH Transcription factor bHLH25 OS=Arabidopsis thaliana GN=BHLH25 PE=2
SV=2
Length = 328
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 5 KNHSEAERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELK 52
++H AER+RRE++ L LVP KMDKA++L + ++ +K L+
Sbjct: 151 QDHIIAERKRREKLTQRFVALSALVPGLKKMDKASVLGDALKHIKYLQ 198
>sp|Q8GZM7|PIF1_ARATH Transcription factor PIF1 OS=Arabidopsis thaliana GN=PIF1 PE=1 SV=1
Length = 478
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 7 HSEAERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELK 52
H+ +ER+RR+RIN + L+ L+P K DKA++L E I +K L+
Sbjct: 289 HNLSERKRRDRINERMKALQELIPRCNKSDKASMLDEAIEYMKSLQ 334
>sp|Q9FHA2|ALC_ARATH Transcription factor ALC OS=Arabidopsis thaliana GN=ALC PE=2 SV=1
Length = 210
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 32/46 (69%)
Query: 7 HSEAERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELK 52
H+ +E++RR +IN + L+ L+P + K DKA++L E I +K+L+
Sbjct: 98 HNLSEKKRRSKINEKMKALQKLIPNSNKTDKASMLDEAIEYLKQLQ 143
>sp|O61734|CYCL_DROME Protein cycle OS=Drosophila melanogaster GN=cyc PE=2 SV=2
Length = 413
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 28/97 (28%)
Query: 5 KNHSEAERRRRERINAHLDTLRGLVP----PNGKMDKATLLAEVIRQVK----------- 49
+NHSE E+RRR+++N +++ L ++P K+DK T+L ++ ++
Sbjct: 33 QNHSEIEKRRRDKMNTYINELSSMIPMCFAMQRKLDKLTVLRMAVQHLRGIRGSGSLHPF 92
Query: 50 -------------ELKTNAIEASKGFLIPTDADEVKV 73
ELK ++AS+GFL D ++
Sbjct: 93 NGSDYRPSFLSDQELKMIILQASEGFLFVVGCDRGRI 129
>sp|P79832|ARNT_ONCMY Aryl hydrocarbon receptor nuclear translocator OS=Oncorhynchus
mykiss GN=arnt PE=1 SV=1
Length = 723
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 2 VALKNHSEAERRRRERINAHLDTLRGLVPPNG----KMDKATLLAEVIRQVKELKTNAIE 57
A +NHSE ERRRR ++ A++ L +VP K DK T+L + +K L+ +
Sbjct: 65 FARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSLRGSGNT 124
Query: 58 ASKGFLIPT 66
A+ G P+
Sbjct: 125 AADGTYKPS 133
>sp|Q9FMB6|BIM3_ARATH Transcription factor BIM3 OS=Arabidopsis thaliana GN=BIM3 PE=1
SV=1
Length = 298
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 7 HSEAERRRRERINAHLDTLRGLVPPN---GKMDKATLLAEVIRQVKELK 52
HSE E+RRR +IN +L ++P N K DKA+ L EVI + L+
Sbjct: 38 HSETEQRRRSKINERFQSLMDIIPQNQNDQKRDKASFLLEVIEYIHFLQ 86
>sp|Q9SVU6|BH023_ARATH Transcription factor bHLH23 OS=Arabidopsis thaliana GN=BHLH23 PE=2
SV=1
Length = 413
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 18/107 (16%)
Query: 7 HSEAERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELKTNAIEASKGFLIPT 66
H +ERRRR++IN + L+ L+P K D++++L +VI VK L++ S G
Sbjct: 282 HKLSERRRRQKINEMMKALQELLPRCTKTDRSSMLDDVIEYVKSLQSQIQMFSMG----- 336
Query: 67 DADEVKVEPYNDEEAGDADFLYKASICCEYRPELMSDLRQALDALPL 113
V + P +Y +I +Y P + + + +P
Sbjct: 337 ---HVMIPP----------MMYAGNIQQQYMPHMAMGMNRPPAFIPF 370
>sp|Q84WK0|BH085_ARATH Transcription factor bHLH85 OS=Arabidopsis thaliana GN=BHLH85 PE=2
SV=1
Length = 352
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 12 RRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELK 52
R+RRERIN L L+ LVP K+D +T+L E + VK L+
Sbjct: 282 RKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQ 322
>sp|O81313|IND_ARATH Transcription factor IND OS=Arabidopsis thaliana GN=IND PE=1 SV=3
Length = 198
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 12 RRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELK 52
RRRRERI+ + L+ +VP KMD A++L E IR K LK
Sbjct: 128 RRRRERISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLK 168
>sp|Q9SVU7|BH056_ARATH Putative transcription factor bHLH056 OS=Arabidopsis thaliana
GN=BHLH56 PE=4 SV=2
Length = 445
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 7 HSEAERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELKT 53
H+ AERRRRE+IN + TL+ L+P K K + L + I VK L++
Sbjct: 260 HNLAERRRREKINEKMKTLQQLIPRCNKSTKVSTLDDAIEYVKSLQS 306
>sp|Q7XHI9|BH084_ARATH Transcription factor bHLH84 OS=Arabidopsis thaliana GN=BHLH84 PE=2
SV=1
Length = 328
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 12 RRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELK 52
R+RRERIN L L+ LVP K+D +T+L E ++ VK L+
Sbjct: 253 RKRRERINERLRILQHLVPNGTKVDISTMLEEAVQYVKFLQ 293
>sp|Q8VZ02|BH048_ARATH Transcription factor bHLH48 OS=Arabidopsis thaliana GN=BHLH48 PE=2
SV=1
Length = 327
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 3 ALKNHSEAERRRRERINAHLDTLRGLVPPNGKMD-KATLLAEVIRQVKELK 52
A NHS AER RRE+INA + L+ LVP K+ A +L E+I V+ L+
Sbjct: 192 ATDNHSLAERARREKINARMKLLQELVPGCDKIQGTALVLDEIINHVQTLQ 242
>sp|Q9BE97|ARNT_BOVIN Aryl hydrocarbon receptor nuclear translocator OS=Bos taurus
GN=ARNT PE=2 SV=1
Length = 790
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 2 VALKNHSEAERRRRERINAHLDTLRGLVPPNG----KMDKATLLAEVIRQVKELKTNAIE 57
+A +NHSE ERRRR ++ A++ L +VP K DK T+L + +K L+
Sbjct: 89 LARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSLRGTGNT 148
Query: 58 ASKGFLIPT 66
++ G P+
Sbjct: 149 STDGTYKPS 157
>sp|P41739|ARNT_RAT Aryl hydrocarbon receptor nuclear translocator OS=Rattus norvegicus
GN=Arnt PE=1 SV=2
Length = 800
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 2 VALKNHSEAERRRRERINAHLDTLRGLVPPNG----KMDKATLLAEVIRQVKELKTNAIE 57
+A +NHSE ERRRR ++ A++ L +VP K DK T+L + +K L+
Sbjct: 89 LARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSLRGTGNT 148
Query: 58 ASKGFLIPT 66
++ G P+
Sbjct: 149 STDGSYKPS 157
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.128 0.347
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,106,374
Number of Sequences: 539616
Number of extensions: 2536085
Number of successful extensions: 7053
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 122
Number of HSP's that attempted gapping in prelim test: 6912
Number of HSP's gapped (non-prelim): 248
length of query: 194
length of database: 191,569,459
effective HSP length: 111
effective length of query: 83
effective length of database: 131,672,083
effective search space: 10928782889
effective search space used: 10928782889
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)