Query 029383
Match_columns 194
No_of_seqs 180 out of 1397
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 12:02:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029383.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029383hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04897 ACT_ACR_3 ACT domain-c 99.6 1.8E-15 3.8E-20 106.2 10.3 73 88-161 2-74 (75)
2 cd04895 ACT_ACR_1 ACT domain-c 99.6 2.1E-14 4.6E-19 100.0 9.7 68 88-156 2-69 (72)
3 cd04896 ACT_ACR-like_3 ACT dom 99.6 2.3E-14 5E-19 100.5 9.3 71 89-161 2-74 (75)
4 cd00083 HLH Helix-loop-helix d 99.4 1.6E-13 3.5E-18 91.2 5.8 52 4-55 5-59 (60)
5 smart00353 HLH helix loop heli 99.4 3E-13 6.4E-18 88.1 6.1 49 8-56 1-52 (53)
6 PF00010 HLH: Helix-loop-helix 99.4 2.3E-13 5E-18 89.6 5.2 48 5-52 3-55 (55)
7 cd04927 ACT_ACR-like_2 Second 99.3 3.5E-11 7.6E-16 84.4 10.2 71 89-161 2-73 (76)
8 cd04900 ACT_UUR-like_1 ACT dom 99.3 5.1E-11 1.1E-15 82.5 9.9 70 88-158 2-72 (73)
9 cd04925 ACT_ACR_2 ACT domain-c 99.3 6.5E-11 1.4E-15 82.5 9.9 72 89-160 2-73 (74)
10 PRK05007 PII uridylyl-transfer 99.1 3.6E-10 7.9E-15 110.7 11.6 76 84-161 805-880 (884)
11 PRK01759 glnD PII uridylyl-tra 99.1 1.3E-09 2.8E-14 106.5 13.7 73 85-159 781-853 (854)
12 PRK04374 PII uridylyl-transfer 98.9 1.1E-08 2.4E-13 100.2 12.0 73 86-160 795-867 (869)
13 PRK00275 glnD PII uridylyl-tra 98.9 1.8E-08 3.8E-13 99.1 13.0 76 86-162 813-888 (895)
14 cd04928 ACT_TyrKc Uncharacteri 98.9 1.7E-08 3.7E-13 69.5 9.2 64 89-159 3-67 (68)
15 KOG1318 Helix loop helix trans 98.9 2.3E-09 5E-14 96.1 5.9 53 5-57 235-291 (411)
16 cd04926 ACT_ACR_4 C-terminal 98.8 4.9E-08 1.1E-12 67.5 9.3 67 88-156 2-68 (72)
17 cd04899 ACT_ACR-UUR-like_2 C-t 98.8 7E-08 1.5E-12 65.3 9.5 68 89-158 2-69 (70)
18 PRK05092 PII uridylyl-transfer 98.7 1.5E-07 3.2E-12 93.0 12.7 75 86-161 842-916 (931)
19 PRK03059 PII uridylyl-transfer 98.7 1.4E-07 3E-12 92.5 11.6 71 86-160 785-855 (856)
20 TIGR01693 UTase_glnD [Protein- 98.7 1.4E-07 2.9E-12 92.4 11.1 73 85-159 777-849 (850)
21 COG2844 GlnD UTP:GlnB (protein 98.7 1.1E-07 2.4E-12 91.1 9.7 73 85-159 789-861 (867)
22 PRK03381 PII uridylyl-transfer 98.7 2E-07 4.3E-12 90.5 11.6 68 86-156 706-773 (774)
23 KOG1319 bHLHZip transcription 98.6 2.6E-08 5.6E-13 80.5 4.0 56 4-59 63-125 (229)
24 KOG4304 Transcriptional repres 98.6 4.6E-08 9.9E-13 83.2 3.7 52 5-56 34-93 (250)
25 PRK01759 glnD PII uridylyl-tra 98.5 2.5E-06 5.5E-11 83.7 15.0 75 86-162 676-751 (854)
26 TIGR01693 UTase_glnD [Protein- 98.5 1.5E-06 3.3E-11 85.1 12.1 76 86-162 667-743 (850)
27 PRK05007 PII uridylyl-transfer 98.4 6.4E-06 1.4E-10 81.2 15.1 75 86-162 700-775 (884)
28 cd04873 ACT_UUR-ACR-like ACT d 98.4 3.7E-06 8E-11 56.3 9.6 68 89-158 2-69 (70)
29 KOG3561 Aryl-hydrocarbon recep 98.3 5E-07 1.1E-11 87.1 5.0 51 4-54 21-75 (803)
30 PRK00275 glnD PII uridylyl-tra 98.2 1E-05 2.2E-10 79.9 10.4 77 86-162 703-780 (895)
31 PRK05092 PII uridylyl-transfer 98.1 3.3E-05 7.2E-10 76.5 11.8 75 86-161 731-806 (931)
32 PRK03059 PII uridylyl-transfer 98.1 4.5E-05 9.7E-10 75.0 12.2 75 86-162 677-752 (856)
33 PRK03381 PII uridylyl-transfer 98.0 4.9E-05 1.1E-09 74.0 11.4 71 86-161 598-668 (774)
34 PF01842 ACT: ACT domain; Int 98.0 5.4E-05 1.2E-09 49.9 8.2 37 89-125 2-38 (66)
35 PF13740 ACT_6: ACT domain; PD 98.0 0.00018 3.9E-09 50.0 11.1 67 87-161 2-68 (76)
36 KOG0561 bHLH transcription fac 98.0 6.2E-06 1.4E-10 71.2 3.7 49 8-56 65-115 (373)
37 PRK04374 PII uridylyl-transfer 97.8 0.0002 4.2E-09 70.7 10.9 73 86-162 689-762 (869)
38 KOG2483 Upstream transcription 97.8 5.4E-05 1.2E-09 63.7 5.8 53 4-56 60-115 (232)
39 PLN03217 transcription factor 97.6 0.00013 2.8E-09 52.0 5.2 46 16-61 20-71 (93)
40 cd04893 ACT_GcvR_1 ACT domains 97.5 0.0014 3E-08 45.6 9.5 66 88-161 2-67 (77)
41 cd04894 ACT_ACR-like_1 ACT dom 97.5 0.00059 1.3E-08 46.1 6.6 66 89-158 2-67 (69)
42 KOG4029 Transcription factor H 97.4 0.00012 2.5E-09 61.4 3.5 57 4-60 110-170 (228)
43 PF13291 ACT_4: ACT domain; PD 97.4 0.0021 4.6E-08 44.5 9.3 51 85-135 4-56 (80)
44 COG2844 GlnD UTP:GlnB (protein 97.4 0.0021 4.6E-08 62.4 11.3 76 88-165 685-761 (867)
45 cd04870 ACT_PSP_1 CT domains f 97.3 0.0024 5.2E-08 44.0 8.7 65 90-161 2-66 (75)
46 PRK00194 hypothetical protein; 97.3 0.0025 5.4E-08 45.2 8.5 69 87-161 3-71 (90)
47 cd04872 ACT_1ZPV ACT domain pr 97.3 0.0023 5.1E-08 45.4 8.1 68 88-161 2-69 (88)
48 cd04869 ACT_GcvR_2 ACT domains 97.1 0.0091 2E-07 41.2 9.6 65 90-161 2-72 (81)
49 KOG3960 Myogenic helix-loop-he 97.0 0.0023 4.9E-08 54.3 6.7 53 8-60 123-177 (284)
50 cd04875 ACT_F4HF-DF N-terminal 97.0 0.0077 1.7E-07 41.1 8.1 67 90-160 2-68 (74)
51 cd04887 ACT_MalLac-Enz ACT_Mal 96.8 0.015 3.1E-07 39.3 8.5 44 90-133 2-46 (74)
52 KOG2588 Predicted DNA-binding 96.8 0.00065 1.4E-08 66.5 2.1 53 4-56 277-330 (953)
53 cd04886 ACT_ThrD-II-like C-ter 96.7 0.019 4.2E-07 37.7 8.6 33 91-123 2-34 (73)
54 cd04888 ACT_PheB-BS C-terminal 96.5 0.024 5.1E-07 38.3 7.6 45 89-133 2-47 (76)
55 PRK06027 purU formyltetrahydro 96.5 0.052 1.1E-06 47.1 11.5 93 87-189 6-100 (286)
56 PRK11589 gcvR glycine cleavage 95.8 0.032 7E-07 45.7 6.8 66 86-159 7-72 (190)
57 PRK13010 purU formyltetrahydro 95.8 0.094 2E-06 45.6 9.8 93 88-189 10-104 (289)
58 cd04877 ACT_TyrR N-terminal AC 95.7 0.071 1.5E-06 36.4 7.3 35 89-123 2-36 (74)
59 cd04876 ACT_RelA-SpoT ACT dom 95.7 0.12 2.7E-06 32.5 8.1 43 91-133 2-45 (71)
60 cd04878 ACT_AHAS N-terminal AC 95.6 0.21 4.5E-06 32.5 8.8 44 90-133 3-48 (72)
61 TIGR00655 PurU formyltetrahydr 95.5 0.25 5.3E-06 42.8 11.1 67 89-161 2-71 (280)
62 cd04881 ACT_HSDH-Hom ACT_HSDH_ 95.3 0.18 3.8E-06 33.5 8.1 44 90-133 3-48 (79)
63 PRK13011 formyltetrahydrofolat 95.3 0.21 4.5E-06 43.4 10.3 91 87-188 7-99 (286)
64 cd04880 ACT_AAAH-PDT-like ACT 95.3 0.24 5.1E-06 33.7 8.6 42 92-133 4-46 (75)
65 cd04905 ACT_CM-PDT C-terminal 95.2 0.34 7.5E-06 33.4 9.2 46 90-135 4-50 (80)
66 cd04889 ACT_PDH-BS-like C-term 95.1 0.1 2.3E-06 33.3 6.0 43 91-133 2-45 (56)
67 PRK00227 glnD PII uridylyl-tra 95.1 0.03 6.5E-07 54.2 4.8 43 88-134 632-674 (693)
68 cd04879 ACT_3PGDH-like ACT_3PG 95.1 0.099 2.2E-06 33.9 6.1 44 90-133 2-47 (71)
69 cd04874 ACT_Af1403 N-terminal 95.1 0.15 3.2E-06 33.4 6.9 45 89-133 2-47 (72)
70 PRK04435 hypothetical protein; 95.0 0.24 5.3E-06 38.8 8.9 50 86-135 68-118 (147)
71 cd04931 ACT_PAH ACT domain of 94.8 0.46 1E-05 34.2 9.4 47 88-134 15-62 (90)
72 cd02116 ACT ACT domains are co 94.8 0.13 2.8E-06 30.6 5.6 35 90-124 1-35 (60)
73 PRK08577 hypothetical protein; 94.8 0.66 1.4E-05 35.5 10.7 48 86-133 55-104 (136)
74 cd04908 ACT_Bt0572_1 N-termina 94.7 0.19 4E-06 33.4 6.6 43 89-133 3-45 (66)
75 COG0788 PurU Formyltetrahydrof 94.5 0.21 4.6E-06 43.1 7.9 72 88-163 8-79 (287)
76 cd04884 ACT_CBS C-terminal ACT 94.4 0.27 5.8E-06 33.1 7.0 34 90-123 2-35 (72)
77 cd04909 ACT_PDH-BS C-terminal 94.4 0.41 8.9E-06 31.7 7.9 35 89-123 3-37 (69)
78 cd04903 ACT_LSD C-terminal ACT 94.4 0.2 4.4E-06 32.6 6.2 44 90-133 2-47 (71)
79 PRK00227 glnD PII uridylyl-tra 94.3 0.25 5.5E-06 47.9 8.9 66 92-163 552-617 (693)
80 cd04882 ACT_Bt0572_2 C-termina 94.2 0.39 8.5E-06 31.0 7.2 44 90-133 2-47 (65)
81 PRK07334 threonine dehydratase 94.2 0.46 9.9E-06 42.9 9.9 49 85-133 324-377 (403)
82 TIGR00119 acolac_sm acetolacta 93.9 0.51 1.1E-05 37.5 8.5 64 89-160 3-68 (157)
83 KOG4447 Transcription factor T 93.8 0.034 7.4E-07 43.9 1.6 50 6-55 81-132 (173)
84 cd04883 ACT_AcuB C-terminal AC 93.7 0.82 1.8E-05 30.3 8.2 45 89-133 3-49 (72)
85 cd04904 ACT_AAAH ACT domain of 93.4 0.52 1.1E-05 32.3 7.0 45 92-137 5-50 (74)
86 PRK11895 ilvH acetolactate syn 93.4 0.72 1.6E-05 36.8 8.7 64 89-160 4-69 (161)
87 PRK11589 gcvR glycine cleavage 93.3 2.4 5.2E-05 34.7 11.8 72 87-161 95-168 (190)
88 PRK06737 acetolactate synthase 92.9 0.86 1.9E-05 31.9 7.4 63 89-159 4-68 (76)
89 CHL00100 ilvH acetohydroxyacid 92.8 1.1 2.4E-05 36.2 9.1 66 89-162 4-71 (174)
90 COG3830 ACT domain-containing 92.1 0.36 7.7E-06 35.0 4.7 68 88-161 4-71 (90)
91 cd04929 ACT_TPH ACT domain of 92.0 1.2 2.5E-05 30.9 7.2 45 92-137 5-50 (74)
92 KOG3910 Helix loop helix trans 91.4 0.15 3.2E-06 47.3 2.7 54 4-57 527-584 (632)
93 cd04885 ACT_ThrD-I Tandem C-te 91.4 1.7 3.7E-05 28.9 7.4 33 91-124 2-34 (68)
94 cd04901 ACT_3PGDH C-terminal A 91.1 0.2 4.4E-06 33.0 2.5 43 91-133 3-45 (69)
95 PRK11152 ilvM acetolactate syn 91.1 1.4 3E-05 30.8 6.8 62 89-159 5-68 (76)
96 cd04902 ACT_3PGDH-xct C-termin 91.0 0.86 1.9E-05 30.1 5.6 43 91-133 3-47 (73)
97 KOG3560 Aryl-hydrocarbon recep 90.8 0.18 3.9E-06 47.3 2.6 38 12-49 34-75 (712)
98 PRK13562 acetolactate synthase 90.6 1.5 3.3E-05 31.3 6.7 65 89-160 4-70 (84)
99 PF13710 ACT_5: ACT domain; PD 90.5 1.5 3.2E-05 29.3 6.3 56 96-159 1-58 (63)
100 PRK10872 relA (p)ppGpp synthet 90.3 1.9 4.1E-05 42.3 9.2 49 85-133 664-714 (743)
101 KOG3559 Transcriptional regula 90.0 0.33 7.1E-06 44.3 3.5 42 9-50 7-52 (598)
102 KOG3558 Hypoxia-inducible fact 89.7 0.26 5.7E-06 47.4 2.8 44 9-53 52-99 (768)
103 PRK11092 bifunctional (p)ppGpp 88.6 2.9 6.2E-05 40.8 9.1 49 85-133 624-673 (702)
104 cd04898 ACT_ACR-like_4 ACT dom 88.2 1.3 2.8E-05 31.1 4.7 41 90-130 3-45 (77)
105 PRK08178 acetolactate synthase 88.0 2.9 6.3E-05 30.6 6.7 66 88-160 9-74 (96)
106 cd04930 ACT_TH ACT domain of t 87.9 3.2 6.8E-05 31.2 7.1 49 88-137 42-91 (115)
107 KOG3898 Transcription factor N 87.7 0.31 6.8E-06 41.6 1.7 47 8-54 77-126 (254)
108 TIGR00691 spoT_relA (p)ppGpp s 87.4 3.8 8.2E-05 39.9 9.1 49 85-133 608-657 (683)
109 PRK11899 prephenate dehydratas 86.3 5.5 0.00012 34.5 8.7 67 87-160 194-261 (279)
110 COG4492 PheB ACT domain-contai 86.2 5.4 0.00012 31.1 7.6 67 86-158 71-138 (150)
111 PRK06382 threonine dehydratase 85.7 7.4 0.00016 35.2 9.6 37 85-121 328-364 (406)
112 KOG4395 Transcription factor A 85.2 1.5 3.2E-05 37.6 4.4 50 7-56 178-230 (285)
113 COG0077 PheA Prephenate dehydr 82.5 9.6 0.00021 33.1 8.4 68 86-160 193-261 (279)
114 cd04906 ACT_ThrD-I_1 First of 81.8 15 0.00032 25.6 8.0 31 90-122 4-34 (85)
115 COG2716 GcvR Glycine cleavage 80.6 1.9 4.2E-05 34.9 3.3 64 86-157 4-67 (176)
116 TIGR01127 ilvA_1Cterm threonin 80.6 18 0.00039 32.2 9.9 37 85-121 303-339 (380)
117 PF05088 Bac_GDH: Bacterial NA 80.1 44 0.00096 35.7 13.6 73 86-159 488-565 (1528)
118 PRK08198 threonine dehydratase 79.2 22 0.00047 31.9 10.0 38 85-122 325-362 (404)
119 COG0317 SpoT Guanosine polypho 78.8 14 0.0003 36.2 9.0 49 84-132 624-672 (701)
120 cd04922 ACT_AKi-HSDH-ThrA_2 AC 76.7 17 0.00036 23.2 8.1 33 90-122 4-39 (66)
121 PRK10622 pheA bifunctional cho 76.5 24 0.00051 32.0 9.4 65 90-161 300-365 (386)
122 PF13840 ACT_7: ACT domain ; P 74.3 22 0.00048 23.5 6.7 34 86-119 5-42 (65)
123 PRK10820 DNA-binding transcrip 73.2 5.3 0.00011 37.4 4.5 36 89-124 2-37 (520)
124 COG4747 ACT domain-containing 72.1 9.6 0.00021 29.3 4.8 38 89-126 5-42 (142)
125 PLN02317 arogenate dehydratase 66.6 48 0.001 30.1 9.0 50 88-138 284-348 (382)
126 PRK08526 threonine dehydratase 64.9 68 0.0015 29.1 9.7 40 85-124 324-363 (403)
127 PRK11898 prephenate dehydratas 63.8 51 0.0011 28.4 8.4 47 88-134 197-245 (283)
128 COG2716 GcvR Glycine cleavage 63.2 11 0.00023 30.6 3.7 74 84-160 89-164 (176)
129 cd04892 ACT_AK-like_2 ACT doma 61.5 35 0.00077 20.9 8.1 32 90-121 3-37 (65)
130 TIGR01268 Phe4hydrox_tetr phen 61.3 42 0.0009 31.1 7.6 49 88-137 17-66 (436)
131 KOG3582 Mlx interactors and re 60.9 1.9 4.1E-05 41.8 -1.1 58 4-61 652-714 (856)
132 cd04937 ACT_AKi-DapG-BS_2 ACT 60.5 43 0.00094 21.6 8.2 32 89-122 3-37 (64)
133 COG4747 ACT domain-containing 57.5 79 0.0017 24.3 7.3 27 90-116 72-98 (142)
134 COG3978 Acetolactate synthase 56.8 69 0.0015 22.8 7.1 64 88-160 4-69 (86)
135 PF02344 Myc-LZ: Myc leucine z 55.4 14 0.0003 21.5 2.3 17 11-27 13-29 (32)
136 PRK14633 hypothetical protein; 53.1 1.1E+02 0.0024 23.9 7.9 54 103-161 9-62 (150)
137 cd04916 ACT_AKiii-YclM-BS_2 AC 52.9 56 0.0012 20.6 8.2 33 90-122 4-39 (66)
138 KOG4447 Transcription factor T 52.6 8 0.00017 30.8 1.3 23 10-32 29-51 (173)
139 PF05088 Bac_GDH: Bacterial NA 52.5 1.2E+02 0.0025 32.7 10.0 32 87-118 17-48 (1528)
140 PRK14637 hypothetical protein; 52.3 1.1E+02 0.0024 24.0 7.8 60 97-161 7-67 (151)
141 cd04919 ACT_AK-Hom3_2 ACT doma 50.9 62 0.0013 20.5 8.3 29 96-124 13-41 (66)
142 COG3283 TyrR Transcriptional r 48.6 20 0.00044 32.8 3.4 36 89-124 2-37 (511)
143 TIGR01270 Trp_5_monoox tryptop 47.9 75 0.0016 29.7 7.1 50 87-137 31-82 (464)
144 COG1707 ACT domain-containing 47.6 95 0.0021 25.4 6.7 44 90-133 5-48 (218)
145 PRK08818 prephenate dehydrogen 46.6 59 0.0013 29.3 6.1 43 90-133 298-341 (370)
146 KOG2663 Acetolactate synthase, 46.2 48 0.001 28.8 5.1 65 88-160 78-144 (309)
147 cd04932 ACT_AKiii-LysC-EC_1 AC 45.8 94 0.002 21.1 8.2 26 94-119 11-36 (75)
148 cd04918 ACT_AK1-AT_2 ACT domai 45.0 85 0.0018 20.3 7.0 30 96-125 12-41 (65)
149 PRK08639 threonine dehydratase 44.9 1.8E+02 0.0038 26.4 9.0 37 85-121 334-370 (420)
150 PRK14646 hypothetical protein; 44.7 1.5E+02 0.0033 23.2 8.1 58 101-161 10-68 (155)
151 PRK12483 threonine dehydratase 43.8 1.8E+02 0.0038 27.6 9.0 50 85-136 343-392 (521)
152 cd04913 ACT_AKii-LysC-BS-like_ 43.8 83 0.0018 19.9 8.1 26 94-119 9-34 (75)
153 TIGR02079 THD1 threonine dehyd 43.0 2.6E+02 0.0055 25.3 9.9 37 85-121 323-359 (409)
154 PRK14632 hypothetical protein; 42.6 1.4E+02 0.0031 23.8 7.2 53 104-161 14-66 (172)
155 cd04912 ACT_AKiii-LysC-EC-like 42.3 62 0.0013 21.7 4.4 25 95-119 12-36 (75)
156 cd04924 ACT_AK-Arch_2 ACT doma 41.5 88 0.0019 19.6 8.3 27 96-122 13-39 (66)
157 PRK11790 D-3-phosphoglycerate 41.2 62 0.0013 29.4 5.5 45 89-133 340-384 (409)
158 cd04868 ACT_AK-like ACT domain 40.7 78 0.0017 18.7 5.8 26 96-121 12-37 (60)
159 cd04890 ACT_AK-like_1 ACT doma 40.5 93 0.002 19.6 5.8 24 96-119 12-35 (62)
160 COG0440 IlvH Acetolactate synt 39.9 1.2E+02 0.0026 24.4 6.2 69 90-165 7-76 (163)
161 KOG3582 Mlx interactors and re 39.2 8.1 0.00018 37.7 -0.6 53 5-60 789-846 (856)
162 TIGR00719 sda_beta L-serine de 38.8 2.2E+02 0.0047 23.3 8.3 42 92-133 153-196 (208)
163 TIGR01124 ilvA_2Cterm threonin 37.5 2.4E+02 0.0051 26.5 8.8 65 85-157 323-387 (499)
164 PRK09224 threonine dehydratase 37.2 3E+02 0.0064 25.8 9.4 50 85-136 326-375 (504)
165 PRK14639 hypothetical protein; 36.5 2E+02 0.0043 22.2 7.1 53 104-161 3-56 (140)
166 PRK06349 homoserine dehydrogen 34.8 1.3E+02 0.0028 27.4 6.5 35 88-122 349-383 (426)
167 cd04933 ACT_AK1-AT_1 ACT domai 33.8 75 0.0016 22.0 3.8 25 95-119 12-36 (78)
168 PRK14647 hypothetical protein; 32.0 2.5E+02 0.0054 22.0 7.5 53 104-161 14-67 (159)
169 PRK14645 hypothetical protein; 31.7 2.6E+02 0.0055 22.0 8.2 59 100-161 11-70 (154)
170 COG0779 Uncharacterized protei 31.2 2.7E+02 0.0057 22.0 7.0 52 104-160 14-66 (153)
171 PF14689 SPOB_a: Sensor_kinase 29.4 93 0.002 20.4 3.5 42 11-59 16-57 (62)
172 cd04911 ACT_AKiii-YclM-BS_1 AC 29.0 1.7E+02 0.0037 20.3 4.9 24 96-119 13-36 (76)
173 cd04915 ACT_AK-Ectoine_2 ACT d 28.3 1.7E+02 0.0038 19.0 7.9 28 97-124 14-41 (66)
174 PRK06545 prephenate dehydrogen 27.9 1.2E+02 0.0027 26.7 5.1 47 87-133 290-336 (359)
175 PRK13581 D-3-phosphoglycerate 27.1 2.8E+02 0.006 26.1 7.5 42 92-133 457-500 (526)
176 cd04891 ACT_AK-LysC-DapG-like_ 26.9 1.5E+02 0.0032 17.7 6.5 27 95-121 9-35 (61)
177 cd04935 ACT_AKiii-DAPDC_1 ACT 25.9 2.1E+02 0.0046 19.2 7.3 26 94-119 11-36 (75)
178 PF12344 UvrB: Ultra-violet re 25.5 1.1E+02 0.0023 19.2 3.0 26 7-32 12-37 (44)
179 cd04921 ACT_AKi-HSDH-ThrA-like 25.3 2E+02 0.0044 18.8 8.0 29 96-124 13-41 (80)
180 PRK00092 ribosome maturation p 25.0 3.3E+02 0.0071 21.1 7.1 54 103-161 12-66 (154)
181 cd04923 ACT_AK-LysC-DapG-like_ 24.6 1.7E+02 0.0038 17.8 7.7 24 96-119 12-35 (63)
182 PLN02550 threonine dehydratase 24.2 4.2E+02 0.009 25.6 8.1 36 85-122 415-450 (591)
183 PRK14640 hypothetical protein; 23.5 3.6E+02 0.0078 21.0 7.7 54 103-161 11-65 (152)
184 PRK14636 hypothetical protein; 23.2 4E+02 0.0086 21.4 8.1 56 103-161 10-66 (176)
185 COG2061 ACT-domain-containing 23.1 1.4E+02 0.0029 24.0 3.9 41 87-127 5-48 (170)
186 cd04936 ACT_AKii-LysC-BS-like_ 23.0 1.9E+02 0.0041 17.6 7.8 24 96-119 12-35 (63)
187 PRK10222 PTS system L-ascorbat 22.8 89 0.0019 21.9 2.6 59 103-161 6-78 (85)
188 PRK00907 hypothetical protein; 22.4 3E+02 0.0066 19.8 6.2 64 88-157 18-84 (92)
189 PRK14634 hypothetical protein; 22.3 3.9E+02 0.0084 20.9 7.9 56 103-161 12-68 (155)
190 PRK08210 aspartate kinase I; R 22.2 5.6E+02 0.012 22.9 8.2 29 89-117 341-372 (403)
191 cd04910 ACT_AK-Ectoine_1 ACT d 21.4 2.8E+02 0.006 18.9 6.5 30 97-128 14-43 (71)
192 KOG1250 Threonine/serine dehyd 21.1 99 0.0021 28.6 3.1 74 85-162 371-445 (457)
193 PRK06635 aspartate kinase; Rev 20.7 5.8E+02 0.013 22.7 8.0 31 89-119 342-375 (404)
194 PRK06635 aspartate kinase; Rev 20.6 4.7E+02 0.01 23.3 7.4 45 89-133 264-310 (404)
195 PF07485 DUF1529: Domain of Un 20.6 3.1E+02 0.0068 20.8 5.4 52 100-155 69-120 (123)
196 cd04871 ACT_PSP_2 ACT domains 20.4 79 0.0017 22.0 1.9 30 90-119 2-32 (84)
No 1
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.65 E-value=1.8e-15 Score=106.19 Aligned_cols=73 Identities=21% Similarity=0.337 Sum_probs=65.0
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHh
Q 029383 88 YKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 161 (194)
Q Consensus 88 v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~ 161 (194)
++|+|.|+||||||++|.++|.++|++|.+|.|+|.|+++.|+||| .+..+.++.++...+.|+++|..++++
T Consensus 2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV-~d~~g~kl~~~~~~~~l~~~L~~al~~ 74 (75)
T cd04897 2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYI-RHKDGRTLSTEGERQRVIKCLEAAIER 74 (75)
T ss_pred EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEE-EcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999 445555566667778999999999875
No 2
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.57 E-value=2.1e-14 Score=99.97 Aligned_cols=68 Identities=25% Similarity=0.310 Sum_probs=58.7
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHH
Q 029383 88 YKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALN 156 (194)
Q Consensus 88 v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~ 156 (194)
+.|+|.++||||||++|+++|..+||+|+.|+|+|.|+++.|+|||... .+.++.++...+.|+++|.
T Consensus 2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~-~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQ-LGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECC-CCCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999544 5555555566678887775
No 3
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.57 E-value=2.3e-14 Score=100.54 Aligned_cols=71 Identities=11% Similarity=0.107 Sum_probs=63.1
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeeEEEEEE--ecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHh
Q 029383 89 KASICCEYRPELMSDLRQALDALPLKMLKAEIS--TLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 161 (194)
Q Consensus 89 ~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Is--t~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~ 161 (194)
.++|.|.||||||++|+++|..+|++|+.|+|+ |.|+++.|+||+ .+.++. +.++...+.|+++|.+++++
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~k-l~d~~~~~~L~~~L~~~l~~ 74 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKK-IMDPKKQAALCARLREEMVC 74 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCc-cCCHHHHHHHHHHHHHHhcC
Confidence 579999999999999999999999999999999 999999999999 554444 55566778999999999875
No 4
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.45 E-value=1.6e-13 Score=91.21 Aligned_cols=52 Identities=40% Similarity=0.597 Sum_probs=48.9
Q ss_pred cccccHHHHHHHHHHHHhHHHhhccCCCC---CCCChhhHHHHHHHHHHHHHHHH
Q 029383 4 LKNHSEAERRRRERINAHLDTLRGLVPPN---GKMDKATLLAEVIRQVKELKTNA 55 (194)
Q Consensus 4 ~~~h~~~Er~RR~~i~~~~~~Lr~lvP~~---~k~dk~sil~~ai~yi~~L~~~~ 55 (194)
...|+..||+||++||..|..|++++|.. .++||++||..||+||+.|+.++
T Consensus 5 r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 5 REAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 45799999999999999999999999987 89999999999999999999875
No 5
>smart00353 HLH helix loop helix domain.
Probab=99.43 E-value=3e-13 Score=88.06 Aligned_cols=49 Identities=41% Similarity=0.624 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHHHhHHHhhccCC---CCCCCChhhHHHHHHHHHHHHHHHHH
Q 029383 8 SEAERRRRERINAHLDTLRGLVP---PNGKMDKATLLAEVIRQVKELKTNAI 56 (194)
Q Consensus 8 ~~~Er~RR~~i~~~~~~Lr~lvP---~~~k~dk~sil~~ai~yi~~L~~~~~ 56 (194)
+..||+||++||+.|..|++++| ...+++|++||.+||+||+.|+++++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999 46799999999999999999999875
No 6
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.43 E-value=2.3e-13 Score=89.56 Aligned_cols=48 Identities=46% Similarity=0.769 Sum_probs=45.3
Q ss_pred ccccHHHHHHHHHHHHhHHHhhccCCCC-----CCCChhhHHHHHHHHHHHHH
Q 029383 5 KNHSEAERRRRERINAHLDTLRGLVPPN-----GKMDKATLLAEVIRQVKELK 52 (194)
Q Consensus 5 ~~h~~~Er~RR~~i~~~~~~Lr~lvP~~-----~k~dk~sil~~ai~yi~~L~ 52 (194)
..|+..||+||++||..|..|+.+||.. .+.+|++||..||+||++||
T Consensus 3 ~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 3 QKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 4699999999999999999999999965 78999999999999999997
No 7
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.30 E-value=3.5e-11 Score=84.36 Aligned_cols=71 Identities=21% Similarity=0.334 Sum_probs=58.9
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEe-cCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHh
Q 029383 89 KASICCEYRPELMSDLRQALDALPLKMLKAEIST-LGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 161 (194)
Q Consensus 89 ~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist-~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~ 161 (194)
.++|.|+||||||+++..+|..+|++|++|+|.| .+|++.|+|+|... .+. ...+...+.|+++|.+++..
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~-~~~-~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA-REL-LHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC-CCC-CCCHHHHHHHHHHHHHHHch
Confidence 5799999999999999999999999999999996 99999999999654 333 22334557788888888753
No 8
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.27 E-value=5.1e-11 Score=82.51 Aligned_cols=70 Identities=26% Similarity=0.336 Sum_probs=56.4
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEec-CCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHH
Q 029383 88 YKASICCEYRPELMSDLRQALDALPLKMLKAEISTL-GGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSV 158 (194)
Q Consensus 88 v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~-g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~ 158 (194)
+.|+|.|+||||||+++..+|..+|++|+.|+|.|. +|++.|+|+|... .+.....+...+.|+++|..+
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~-~~~~~~~~~~~~~l~~~L~~~ 72 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDP-DGEPIGERERLARIREALEDA 72 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECC-CCCCCChHHHHHHHHHHHHhh
Confidence 457899999999999999999999999999999877 6999999999643 333333344556777777665
No 9
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.26 E-value=6.5e-11 Score=82.45 Aligned_cols=72 Identities=24% Similarity=0.307 Sum_probs=60.7
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHH
Q 029383 89 KASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLE 160 (194)
Q Consensus 89 ~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~ 160 (194)
.+++.++||||+|++|..+|..+|+.|+.|++.|.|+++.++|+|....++.+..++...+.|+++|.+++.
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 579999999999999999999999999999999999999999999654423333344566889999988764
No 10
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.13 E-value=3.6e-10 Score=110.69 Aligned_cols=76 Identities=18% Similarity=0.354 Sum_probs=66.1
Q ss_pred CceeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHh
Q 029383 84 ADFLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 161 (194)
Q Consensus 84 ~~~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~ 161 (194)
+..++.|+|.|.||||||++|+++|.++|++|+.|+|+|.|+++.|+|||.+. .+.+.+ +...+.|+++|..++..
T Consensus 805 s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~-~g~~l~-~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 805 TDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATA-DRRALN-EELQQELRQRLTEALNP 880 (884)
T ss_pred CCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcC-CCCcCC-HHHHHHHHHHHHHHHhh
Confidence 34788999999999999999999999999999999999999999999999544 444444 45568999999999864
No 11
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.09 E-value=1.3e-09 Score=106.47 Aligned_cols=73 Identities=22% Similarity=0.344 Sum_probs=63.1
Q ss_pred ceeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHH
Q 029383 85 DFLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVL 159 (194)
Q Consensus 85 ~~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l 159 (194)
..++.|+|.+.||||||++|+++|.++|++|+.|+|+|.|+++.|+|||.+. .+.+..+... +.|+++|..++
T Consensus 781 ~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~-~g~~l~~~~~-~~l~~~L~~~l 853 (854)
T PRK01759 781 QEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQ-QGQALDEEER-KALKSRLLSNL 853 (854)
T ss_pred CCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECC-CCCcCChHHH-HHHHHHHHHHh
Confidence 4788999999999999999999999999999999999999999999999654 4444444444 88999988876
No 12
>PRK04374 PII uridylyl-transferase; Provisional
Probab=98.91 E-value=1.1e-08 Score=100.19 Aligned_cols=73 Identities=22% Similarity=0.327 Sum_probs=63.1
Q ss_pred eeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHH
Q 029383 86 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLE 160 (194)
Q Consensus 86 ~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~ 160 (194)
..+.|+|.+.||||||++|..+|..+|++|+.|+|+|.|+++.|+|+|....+. +..+... +.|+++|..++.
T Consensus 795 ~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~-~~~~~~~-~~l~~~L~~~l~ 867 (869)
T PRK04374 795 RRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDR-PLSESAR-QALRDALCACLD 867 (869)
T ss_pred CeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCC-cCChHHH-HHHHHHHHHHhc
Confidence 678899999999999999999999999999999999999999999999654433 3334444 899999999885
No 13
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=98.90 E-value=1.8e-08 Score=99.08 Aligned_cols=76 Identities=22% Similarity=0.349 Sum_probs=65.0
Q ss_pred eeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHhc
Q 029383 86 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKA 162 (194)
Q Consensus 86 ~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~~ 162 (194)
..+.|+|.+.||||||++|..+|..+||+|+.|+|+|.||++.|+|+|.... +.++.++...+.|+++|..++...
T Consensus 813 ~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~-g~~l~~~~~~~~l~~~L~~~L~~~ 888 (895)
T PRK00275 813 PVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDAD-NQPLSDPQLCSRLQDAICEQLDAR 888 (895)
T ss_pred CeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHhcc
Confidence 5788999999999999999999999999999999999999999999996543 333444456688999999998653
No 14
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.90 E-value=1.7e-08 Score=69.50 Aligned_cols=64 Identities=25% Similarity=0.365 Sum_probs=52.7
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeeEEEEEE-ecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHH
Q 029383 89 KASICCEYRPELMSDLRQALDALPLKMLKAEIS-TLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVL 159 (194)
Q Consensus 89 ~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Is-t~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l 159 (194)
.|.|.|+|+||+|.++..+|..+||+|+.|+|. +.+|.+.++|+|....+++ .+.+.++|++++
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~-------~~~~~~~~~~~~ 67 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGE-------TAALGHALQKEI 67 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccc-------hHHHHHHHHHhh
Confidence 356889999999999999999999999999996 6689999999996543332 356777777765
No 15
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=98.89 E-value=2.3e-09 Score=96.08 Aligned_cols=53 Identities=38% Similarity=0.557 Sum_probs=48.2
Q ss_pred ccccHHHHHHHHHHHHhHHHhhccCCCC----CCCChhhHHHHHHHHHHHHHHHHHH
Q 029383 5 KNHSEAERRRRERINAHLDTLRGLVPPN----GKMDKATLLAEVIRQVKELKTNAIE 57 (194)
Q Consensus 5 ~~h~~~Er~RR~~i~~~~~~Lr~lvP~~----~k~dk~sil~~ai~yi~~L~~~~~~ 57 (194)
-+|++.|||||++||+++.+|..|||.+ .+..|.+||..+++||+.||+..++
T Consensus 235 d~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~ 291 (411)
T KOG1318|consen 235 DNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQR 291 (411)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999976 4667999999999999999997663
No 16
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.81 E-value=4.9e-08 Score=67.46 Aligned_cols=67 Identities=28% Similarity=0.349 Sum_probs=53.1
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHH
Q 029383 88 YKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALN 156 (194)
Q Consensus 88 v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~ 156 (194)
+.+.|.++|+||+|++|..+|..+|+.|++|.+.|.++.+.++|+|.... +... +....+.|+++|.
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~-~~~~-~~~~~~~l~~~l~ 68 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDAN-GNPV-DPKTIEAVRQEIG 68 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCC-CCcC-CHHHHHHHHHHhc
Confidence 45778999999999999999999999999999999999999999996543 3322 2234455666554
No 17
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.80 E-value=7e-08 Score=65.31 Aligned_cols=68 Identities=25% Similarity=0.353 Sum_probs=56.0
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHH
Q 029383 89 KASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSV 158 (194)
Q Consensus 89 ~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~ 158 (194)
.+.+.++|+||+|.+|+++|.++|+.|.++++.+.++.+.++|++....+.. . .....+.|+++|..+
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~-~-~~~~~~~i~~~l~~~ 69 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQP-L-DPERQEALRAALGEA 69 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCc-C-CHHHHHHHHHHHHhh
Confidence 4778999999999999999999999999999999999999999996544333 2 334556788887665
No 18
>PRK05092 PII uridylyl-transferase; Provisional
Probab=98.71 E-value=1.5e-07 Score=92.96 Aligned_cols=75 Identities=25% Similarity=0.286 Sum_probs=64.7
Q ss_pred eeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHh
Q 029383 86 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 161 (194)
Q Consensus 86 ~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~ 161 (194)
..+.|+|.|.||||+|++|+.+|..+|++|..|+|.|.|+++.++|+|....+. ....+...+.|+++|..++..
T Consensus 842 ~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~-~i~~~~~~~~l~~~L~~~L~~ 916 (931)
T PRK05092 842 RFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGL-KITNEARQAAIRRALLAALAE 916 (931)
T ss_pred CeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCC-cCCCHHHHHHHHHHHHHHhcC
Confidence 568899999999999999999999999999999999999999999999655433 333444568899999999965
No 19
>PRK03059 PII uridylyl-transferase; Provisional
Probab=98.69 E-value=1.4e-07 Score=92.47 Aligned_cols=71 Identities=21% Similarity=0.342 Sum_probs=60.5
Q ss_pred eeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHH
Q 029383 86 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLE 160 (194)
Q Consensus 86 ~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~ 160 (194)
..+.|+|.|.||||||++|..+|..+|++|+.|+|+|.||++.|+|+|.... ..++...+.|+++|..+++
T Consensus 785 ~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~~----~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 785 QYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGSG----LSDNRLQIQLETELLDALA 855 (856)
T ss_pred CEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCCC----CCCHHHHHHHHHHHHHHhc
Confidence 5788999999999999999999999999999999999999999999993222 1234556889999988764
No 20
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=98.68 E-value=1.4e-07 Score=92.40 Aligned_cols=73 Identities=18% Similarity=0.214 Sum_probs=62.6
Q ss_pred ceeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHH
Q 029383 85 DFLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVL 159 (194)
Q Consensus 85 ~~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l 159 (194)
...+.|+|.|.||||+|++|+++|..+|++|.+|+|+|.|+++.++|++....+. +..+ ...+.|+++|..++
T Consensus 777 ~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~-~~~~-~~~~~l~~~L~~~l 849 (850)
T TIGR01693 777 RKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGL-KLTD-EEEQRLLEVLAASV 849 (850)
T ss_pred CCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCC-CCCH-HHHHHHHHHHHHHh
Confidence 4688899999999999999999999999999999999999999999999654443 3333 45688888888775
No 21
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.1e-07 Score=91.12 Aligned_cols=73 Identities=23% Similarity=0.304 Sum_probs=58.0
Q ss_pred ceeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHH
Q 029383 85 DFLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVL 159 (194)
Q Consensus 85 ~~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l 159 (194)
+..+.+|+.+.||||||+.|..+|.+++|+|++|+|+|+|+++.|+|+|....+.. .+. .....+.++|..++
T Consensus 789 ~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~-l~~-~~~q~l~~~ll~al 861 (867)
T COG2844 789 NDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQA-LNA-ELRQSLLQRLLEAL 861 (867)
T ss_pred CCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEecccccc-CCH-HHHHHHHHHHHHHh
Confidence 35678999999999999999999999999999999999999999999995554433 322 33345555555554
No 22
>PRK03381 PII uridylyl-transferase; Provisional
Probab=98.66 E-value=2e-07 Score=90.47 Aligned_cols=68 Identities=25% Similarity=0.297 Sum_probs=57.0
Q ss_pred eeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHH
Q 029383 86 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALN 156 (194)
Q Consensus 86 ~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~ 156 (194)
..+.|+|.|.||||||++|..+|..+|++|++|+|+|.|+++.|+|+|.... +..+.+. .+.|+++|.
T Consensus 706 ~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~-g~~~~~~--~~~l~~~L~ 773 (774)
T PRK03381 706 DATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAA-GGPLADA--RAAVEQAVL 773 (774)
T ss_pred CeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCC-CCcCchH--HHHHHHHhh
Confidence 5688999999999999999999999999999999999999999999996543 4333333 567777664
No 23
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.64 E-value=2.6e-08 Score=80.49 Aligned_cols=56 Identities=30% Similarity=0.487 Sum_probs=49.0
Q ss_pred cccccHHHHHHHHHHHHhHHHhhccCCCC-------CCCChhhHHHHHHHHHHHHHHHHHHHh
Q 029383 4 LKNHSEAERRRRERINAHLDTLRGLVPPN-------GKMDKATLLAEVIRQVKELKTNAIEAS 59 (194)
Q Consensus 4 ~~~h~~~Er~RR~~i~~~~~~Lr~lvP~~-------~k~dk~sil~~ai~yi~~L~~~~~~l~ 59 (194)
...|.-+||+||+.||..|..|+.|||.+ .|..||.||..+|+||.+|+++..+-+
T Consensus 63 r~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe 125 (229)
T KOG1319|consen 63 RRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQE 125 (229)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999943 477899999999999999999766543
No 24
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.56 E-value=4.6e-08 Score=83.16 Aligned_cols=52 Identities=31% Similarity=0.571 Sum_probs=46.4
Q ss_pred ccccHHHHHHHHHHHHhHHHhhccCCC--------CCCCChhhHHHHHHHHHHHHHHHHH
Q 029383 5 KNHSEAERRRRERINAHLDTLRGLVPP--------NGKMDKATLLAEVIRQVKELKTNAI 56 (194)
Q Consensus 5 ~~h~~~Er~RR~~i~~~~~~Lr~lvP~--------~~k~dk~sil~~ai~yi~~L~~~~~ 56 (194)
.+|-+.||+||+|||+.|.+|+.|||. .+|++||-||+-|++|++.|+....
T Consensus 34 ~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~ 93 (250)
T KOG4304|consen 34 VRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ 93 (250)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence 468899999999999999999999992 2788999999999999999987543
No 25
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=98.52 E-value=2.5e-06 Score=83.66 Aligned_cols=75 Identities=19% Similarity=0.189 Sum_probs=63.1
Q ss_pred eeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEe-cCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHhc
Q 029383 86 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEIST-LGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKA 162 (194)
Q Consensus 86 ~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist-~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~~ 162 (194)
..+.|.|.|+||||||++|..+|..+||+|++|+|.| .+|++.|+|+|....+. +.. ....+.|+++|..++...
T Consensus 676 ~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~-~~~-~~~~~~l~~~L~~aL~~~ 751 (854)
T PRK01759 676 GGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGK-LLE-FDRRRQLEQALTKALNTN 751 (854)
T ss_pred CeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCC-CCC-HHHHHHHHHHHHHHHcCC
Confidence 4678899999999999999999999999999999976 89999999999665433 332 345578999999998753
No 26
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=98.47 E-value=1.5e-06 Score=85.07 Aligned_cols=76 Identities=21% Similarity=0.214 Sum_probs=64.2
Q ss_pred eeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEE-ecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHhc
Q 029383 86 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEIS-TLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKA 162 (194)
Q Consensus 86 ~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Is-t~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~~ 162 (194)
..+.|.|.+.|+||+|++|+.+|..+||+|++|+|. |.+|++.|+|+|....+ .+.......+.|+++|..++...
T Consensus 667 ~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g-~~~~~~~~~~~i~~~L~~~L~~~ 743 (850)
T TIGR01693 667 GGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFG-SPPAAERVFQELLQGLVDVLAGL 743 (850)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCC-CCCCcHHHHHHHHHHHHHHHcCC
Confidence 567889999999999999999999999999999998 88999999999966543 33333445678999999999763
No 27
>PRK05007 PII uridylyl-transferase; Provisional
Probab=98.42 E-value=6.4e-06 Score=81.15 Aligned_cols=75 Identities=20% Similarity=0.158 Sum_probs=62.0
Q ss_pred eeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecC-CEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHhc
Q 029383 86 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLG-GRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKA 162 (194)
Q Consensus 86 ~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g-~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~~ 162 (194)
..+.|.|.|+|+||+|++|+.+|..+||+|++|+|.|.+ |++.|+|+|....+.. .. ....+.|+++|.+++...
T Consensus 700 ~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~-~~-~~~~~~I~~~L~~aL~~~ 775 (884)
T PRK05007 700 GGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSP-LS-QDRHQVIRKALEQALTQS 775 (884)
T ss_pred CeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCC-CC-HHHHHHHHHHHHHHHcCC
Confidence 467889999999999999999999999999999997664 5999999996654433 22 345578999999999764
No 28
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.42 E-value=3.7e-06 Score=56.29 Aligned_cols=68 Identities=25% Similarity=0.348 Sum_probs=53.6
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHH
Q 029383 89 KASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSV 158 (194)
Q Consensus 89 ~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~ 158 (194)
.+.+.|+|+||+|.+|+.+|.++|+.|.++.+.+.+++...+|++....... ......+.|+++|..+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~l~~~l~~~ 69 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRP--LDPERIARLEEALEDA 69 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCc--CCHHHHHHHHHHHHhh
Confidence 4678999999999999999999999999999999888888999985543332 1234556677777654
No 29
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.34 E-value=5e-07 Score=87.07 Aligned_cols=51 Identities=35% Similarity=0.572 Sum_probs=47.3
Q ss_pred cccccHHHHHHHHHHHHhHHHhhccCCCC----CCCChhhHHHHHHHHHHHHHHH
Q 029383 4 LKNHSEAERRRRERINAHLDTLRGLVPPN----GKMDKATLLAEVIRQVKELKTN 54 (194)
Q Consensus 4 ~~~h~~~Er~RR~~i~~~~~~Lr~lvP~~----~k~dk~sil~~ai~yi~~L~~~ 54 (194)
..+|+.+|||||++||..+.+|.+|||.. -|+||.+||..||.+||.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 56899999999999999999999999965 6999999999999999988874
No 30
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=98.19 E-value=1e-05 Score=79.88 Aligned_cols=77 Identities=12% Similarity=0.107 Sum_probs=62.6
Q ss_pred eeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEE-EecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHhc
Q 029383 86 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEI-STLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKA 162 (194)
Q Consensus 86 ~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~I-st~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~~ 162 (194)
..+.|.|.|.|+||+|++|+.+|..+|++|++|+| ++.+|.+.++|+|....+......+...+.|+++|..++...
T Consensus 703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~~~ 780 (895)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNP 780 (895)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHcCC
Confidence 35678899999999999999999999999999998 677899999999976554432223345678999999988653
No 31
>PRK05092 PII uridylyl-transferase; Provisional
Probab=98.08 E-value=3.3e-05 Score=76.54 Aligned_cols=75 Identities=17% Similarity=0.180 Sum_probs=61.4
Q ss_pred eeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEe-cCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHh
Q 029383 86 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEIST-LGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 161 (194)
Q Consensus 86 ~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist-~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~ 161 (194)
..+.|.|.|.|+||+|.+|+.+|..+|++|++|+|.| .+|++.++|+|....+. ........+.|+++|..++..
T Consensus 731 ~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~-~~~~~~~~~~l~~~L~~~l~~ 806 (931)
T PRK05092 731 GVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGR-DEDEPRRLARLAKAIEDALSG 806 (931)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHcC
Confidence 4577889999999999999999999999999999976 78999999999654332 222345567899999888854
No 32
>PRK03059 PII uridylyl-transferase; Provisional
Probab=98.07 E-value=4.5e-05 Score=75.04 Aligned_cols=75 Identities=16% Similarity=0.185 Sum_probs=61.7
Q ss_pred eeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEE-EecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHhc
Q 029383 86 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEI-STLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKA 162 (194)
Q Consensus 86 ~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~I-st~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~~ 162 (194)
..+.|.|.|+|+||+|++|+.+|..+||+|++|+| ++.+|.+.++|+|....+. .......+.|+++|.+++...
T Consensus 677 ~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~--~~~~~~~~~i~~~l~~~l~~~ 752 (856)
T PRK03059 677 EGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEED--VHYRDIINLVEHELAERLAEQ 752 (856)
T ss_pred CeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC--CChHHHHHHHHHHHHHHHcCC
Confidence 34677899999999999999999999999999999 6779999999999654333 223446678999999988653
No 33
>PRK03381 PII uridylyl-transferase; Provisional
Probab=98.02 E-value=4.9e-05 Score=74.01 Aligned_cols=71 Identities=17% Similarity=0.152 Sum_probs=59.5
Q ss_pred eeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHh
Q 029383 86 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 161 (194)
Q Consensus 86 ~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~ 161 (194)
..+.|.|.|.||||+|++|..+|..+|++|++|+|.|.+|.+.++|+|....+... ..+.|+++|.+++..
T Consensus 598 ~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~-----~~~~l~~~L~~~L~~ 668 (774)
T PRK03381 598 HMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPP-----DAALLRQDLRRALDG 668 (774)
T ss_pred CeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcc-----hHHHHHHHHHHHHcC
Confidence 35678899999999999999999999999999999999999999999964433321 136788888888765
No 34
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.01 E-value=5.4e-05 Score=49.95 Aligned_cols=37 Identities=14% Similarity=0.227 Sum_probs=34.8
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCC
Q 029383 89 KASICCEYRPELMSDLRQALDALPLKMLKAEISTLGG 125 (194)
Q Consensus 89 ~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~ 125 (194)
.|.+.|+||||+|.+++.+|.++|+.|..+.+.+.++
T Consensus 2 ~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~ 38 (66)
T PF01842_consen 2 RVRVIVPDRPGILADVTEILADHGINIDSISQSSDKD 38 (66)
T ss_dssp EEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCC
Confidence 5778999999999999999999999999999998877
No 35
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.01 E-value=0.00018 Score=50.00 Aligned_cols=67 Identities=15% Similarity=0.269 Sum_probs=53.2
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHh
Q 029383 87 LYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 161 (194)
Q Consensus 87 ~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~ 161 (194)
.+.|.+.++||||+++.+..+|.++|..|..++.++.++++.-++.+.-. ....+.|+.+|..+..+
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~l~~~ 68 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--------EDSLERLESALEELAEE 68 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--------HHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--------cccHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999877777443 12457888888877543
No 36
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.97 E-value=6.2e-06 Score=71.19 Aligned_cols=49 Identities=33% Similarity=0.550 Sum_probs=44.3
Q ss_pred cHHHHHHHHHHHHhHHHhhccCCC--CCCCChhhHHHHHHHHHHHHHHHHH
Q 029383 8 SEAERRRRERINAHLDTLRGLVPP--NGKMDKATLLAEVIRQVKELKTNAI 56 (194)
Q Consensus 8 ~~~Er~RR~~i~~~~~~Lr~lvP~--~~k~dk~sil~~ai~yi~~L~~~~~ 56 (194)
+..||+|-+-||..|..||+|+|. +.|..||.||+.+.+||.+|+.+.-
T Consensus 65 NsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt 115 (373)
T KOG0561|consen 65 NSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKT 115 (373)
T ss_pred cchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccc
Confidence 456999999999999999999995 5889999999999999999998543
No 37
>PRK04374 PII uridylyl-transferase; Provisional
Probab=97.77 E-value=0.0002 Score=70.69 Aligned_cols=73 Identities=14% Similarity=0.079 Sum_probs=59.7
Q ss_pred eeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEe-cCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHhc
Q 029383 86 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEIST-LGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKA 162 (194)
Q Consensus 86 ~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist-~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~~ 162 (194)
..+.|.|.|.|+||+|++|+.+|..+|++|++|+|.| .+|.+.++|+|....+.. . .....|+++|..++...
T Consensus 689 ~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~---~-~~~~~i~~~l~~~l~~~ 762 (869)
T PRK04374 689 DALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYA---D-GDPQRLAAALRQVLAGD 762 (869)
T ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCC---h-HHHHHHHHHHHHHHcCC
Confidence 3467789999999999999999999999999999975 789999999996544432 1 23456899998888763
No 38
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=97.75 E-value=5.4e-05 Score=63.72 Aligned_cols=53 Identities=19% Similarity=0.413 Sum_probs=45.2
Q ss_pred cccccHHHHHHHHHHHHhHHHhhccCCCC--CCCC-hhhHHHHHHHHHHHHHHHHH
Q 029383 4 LKNHSEAERRRRERINAHLDTLRGLVPPN--GKMD-KATLLAEVIRQVKELKTNAI 56 (194)
Q Consensus 4 ~~~h~~~Er~RR~~i~~~~~~Lr~lvP~~--~k~d-k~sil~~ai~yi~~L~~~~~ 56 (194)
...|+.-||+||+.|.++|..|+..||.. .+.. .++||..|..||+.|+.+..
T Consensus 60 R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~ 115 (232)
T KOG2483|consen 60 RAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSA 115 (232)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHH
Confidence 45699999999999999999999999965 2222 58999999999999998644
No 39
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.62 E-value=0.00013 Score=51.99 Aligned_cols=46 Identities=22% Similarity=0.353 Sum_probs=39.3
Q ss_pred HHHHHhHHHhhccCCCC------CCCChhhHHHHHHHHHHHHHHHHHHHhcc
Q 029383 16 ERINAHLDTLRGLVPPN------GKMDKATLLAEVIRQVKELKTNAIEASKG 61 (194)
Q Consensus 16 ~~i~~~~~~Lr~lvP~~------~k~dk~sil~~ai~yi~~L~~~~~~l~~~ 61 (194)
++|++.+..|+.|+|.. .+..-+-+|++|..||+.|+.++.+|.+.
T Consensus 20 dqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSer 71 (93)
T PLN03217 20 DQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSER 71 (93)
T ss_pred HHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999943 44555668999999999999999998763
No 40
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=97.54 E-value=0.0014 Score=45.60 Aligned_cols=66 Identities=15% Similarity=0.260 Sum_probs=51.0
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHh
Q 029383 88 YKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 161 (194)
Q Consensus 88 v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~ 161 (194)
+.+.+.|+|+||+.++|.+.|.++|..|..++....++++.-.+.+... . ...+.|+++|...-.+
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~---~-----~~~~~l~~~l~~~~~~ 67 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS---W-----DAIAKLEAALPGLARR 67 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec---c-----ccHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999988877544444322 1 1346777777775443
No 41
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.48 E-value=0.00059 Score=46.13 Aligned_cols=66 Identities=18% Similarity=0.117 Sum_probs=53.3
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHH
Q 029383 89 KASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSV 158 (194)
Q Consensus 89 ~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~ 158 (194)
.|.|.|+|+.||=.+|.+++-++||.|....++|.|....-+|.|......- ...=+.|+++|..+
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~----~~rW~lLK~RL~~~ 67 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSI----KVRWDLLKNRLMSA 67 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCC----cccHHHHHHHHHhc
Confidence 4789999999999999999999999999999999999998889886543221 23346777777653
No 42
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.44 E-value=0.00012 Score=61.42 Aligned_cols=57 Identities=21% Similarity=0.315 Sum_probs=49.5
Q ss_pred cccccHHHHHHHHHHHHhHHHhhccCCC----CCCCChhhHHHHHHHHHHHHHHHHHHHhc
Q 029383 4 LKNHSEAERRRRERINAHLDTLRGLVPP----NGKMDKATLLAEVIRQVKELKTNAIEASK 60 (194)
Q Consensus 4 ~~~h~~~Er~RR~~i~~~~~~Lr~lvP~----~~k~dk~sil~~ai~yi~~L~~~~~~l~~ 60 (194)
...++..||+|=+.+|..|..||.++|. ..|..|..+|.-||.||+.|+.-++.-..
T Consensus 110 ~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~ 170 (228)
T KOG4029|consen 110 RQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEA 170 (228)
T ss_pred hhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhccccc
Confidence 4457788999999999999999999994 57889999999999999999987775443
No 43
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.42 E-value=0.0021 Score=44.53 Aligned_cols=51 Identities=18% Similarity=0.276 Sum_probs=41.0
Q ss_pred ceeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEec--CCEEEEEEEEee
Q 029383 85 DFLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTL--GGRLKNVIVFTS 135 (194)
Q Consensus 85 ~~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~--g~~~~~vf~v~~ 135 (194)
.+.+.+.+.+.||||+|.+|+.++.+.|..|.+.++.+. ++.+.-.|.+..
T Consensus 4 ~f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V 56 (80)
T PF13291_consen 4 SFPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV 56 (80)
T ss_dssp -EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE
T ss_pred EEEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE
Confidence 477889999999999999999999999999999999985 567766666633
No 44
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0021 Score=62.40 Aligned_cols=76 Identities=16% Similarity=0.159 Sum_probs=60.4
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeeEEEEE-EecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHhcCCC
Q 029383 88 YKASICCEYRPELMSDLRQALDALPLKMLKAEI-STLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKASPS 165 (194)
Q Consensus 88 v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~I-st~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~~~~~ 165 (194)
+.|.|.|+|+|++|..+..++...|++|+.|+| +|.+|++.|+|+|....+... .......+++.|..++..-...
T Consensus 685 teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~--~~dr~~~~~~~l~~~l~s~~~~ 761 (867)
T COG2844 685 TEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPV--EEDRRAALRGELIEALLSGKAQ 761 (867)
T ss_pred eEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCcc--chhHHHHHHHHHHHHHhcCCCC
Confidence 456688999999999999999999999999999 678899999999965544333 2445567778888887765444
No 45
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.34 E-value=0.0024 Score=43.99 Aligned_cols=65 Identities=20% Similarity=0.216 Sum_probs=51.5
Q ss_pred EEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHh
Q 029383 90 ASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 161 (194)
Q Consensus 90 I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~ 161 (194)
|++.+.||||+..++.++|.++|+.|.+.+.++.++.+.-.|.+.-... ...+.++++|...-..
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~-------~~~~~l~~~l~~l~~~ 66 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDS-------ADSEALLKDLLFKAHE 66 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCC-------CCHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999988776776632211 1347778887776543
No 46
>PRK00194 hypothetical protein; Validated
Probab=97.28 E-value=0.0025 Score=45.24 Aligned_cols=69 Identities=7% Similarity=0.180 Sum_probs=51.0
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHh
Q 029383 87 LYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 161 (194)
Q Consensus 87 ~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~ 161 (194)
.+.+.+.|+|+||++.++.+.|.++|+.|.+.+-.+.++.+.-.+.+.-. .. ....+.|++.|...-..
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~--~~----~~~~~~l~~~l~~l~~~ 71 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS--ES----KKDFAELKEELEELGKE 71 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec--CC----CCCHHHHHHHHHHHHHH
Confidence 45688999999999999999999999999999998888766544444221 10 12246777777775433
No 47
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.26 E-value=0.0023 Score=45.36 Aligned_cols=68 Identities=13% Similarity=0.233 Sum_probs=51.7
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHh
Q 029383 88 YKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 161 (194)
Q Consensus 88 v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~ 161 (194)
..+.+.|+|+||++++|.+.|.++|..|.+.+..+.++.+.-.+.+.-. . .....+.++++|...-..
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~-~-----~~~~~~~L~~~l~~l~~~ 69 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS-E-----SNLDFAELQEELEELGKE 69 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC-C-----CCCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999988876655555322 1 012356788888776544
No 48
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.09 E-value=0.0091 Score=41.16 Aligned_cols=65 Identities=12% Similarity=0.184 Sum_probs=47.4
Q ss_pred EEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecC------CEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHh
Q 029383 90 ASICCEYRPELMSDLRQALDALPLKMLKAEISTLG------GRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 161 (194)
Q Consensus 90 I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g------~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~ 161 (194)
|.+.|+|+||++.+|.+.|.++|+.|.+.+..+.+ +.+.-.+.+.-. .. .....++++|...-.+
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p--~~-----~~~~~l~~~l~~l~~~ 72 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP--AG-----TDLDALREELEELCDD 72 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC--CC-----CCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999998887 444333333211 11 2346777777776543
No 49
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.00 E-value=0.0023 Score=54.31 Aligned_cols=53 Identities=26% Similarity=0.435 Sum_probs=45.1
Q ss_pred cHHHHHHHHHHHHhHHHhhccC-CC-CCCCChhhHHHHHHHHHHHHHHHHHHHhc
Q 029383 8 SEAERRRRERINAHLDTLRGLV-PP-NGKMDKATLLAEVIRQVKELKTNAIEASK 60 (194)
Q Consensus 8 ~~~Er~RR~~i~~~~~~Lr~lv-P~-~~k~dk~sil~~ai~yi~~L~~~~~~l~~ 60 (194)
-+.||+|=.|+|+.|.+|+.-. +| .+..-|.-||..||+||..||.-++++..
T Consensus 123 TMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~ 177 (284)
T KOG3960|consen 123 TMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQ 177 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4679999999999999997543 32 57789999999999999999998887754
No 50
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.96 E-value=0.0077 Score=41.14 Aligned_cols=67 Identities=10% Similarity=0.082 Sum_probs=44.6
Q ss_pred EEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHH
Q 029383 90 ASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLE 160 (194)
Q Consensus 90 I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~ 160 (194)
|.+.|+|+||++.+|.+.|.++|+.|.+.+..+..+.. .|+..-...... .....+.++++|...-.
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~--~f~~~~~~~~~~--~~~~~~~l~~~l~~l~~ 68 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSG--RFFMRVEFELEG--FDLSREALEAAFAPVAA 68 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCC--eEEEEEEEEeCC--CCCCHHHHHHHHHHHHH
Confidence 67899999999999999999999999999888632211 133311111110 01235788888777644
No 51
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.82 E-value=0.015 Score=39.33 Aligned_cols=44 Identities=11% Similarity=0.120 Sum_probs=36.4
Q ss_pred EEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecC-CEEEEEEEE
Q 029383 90 ASICCEYRPELMSDLRQALDALPLKMLKAEISTLG-GRLKNVIVF 133 (194)
Q Consensus 90 I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g-~~~~~vf~v 133 (194)
+.+.+.|+||+|.+|+.++.+.|..|...+..+.. +.+.-.|.+
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~v 46 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITV 46 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEE
Confidence 56889999999999999999999999999987764 555544555
No 52
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=96.79 E-value=0.00065 Score=66.50 Aligned_cols=53 Identities=28% Similarity=0.457 Sum_probs=48.5
Q ss_pred cccccHHHHHHHHHHHHhHHHhhccCCCC-CCCChhhHHHHHHHHHHHHHHHHH
Q 029383 4 LKNHSEAERRRRERINAHLDTLRGLVPPN-GKMDKATLLAEVIRQVKELKTNAI 56 (194)
Q Consensus 4 ~~~h~~~Er~RR~~i~~~~~~Lr~lvP~~-~k~dk~sil~~ai~yi~~L~~~~~ 56 (194)
..+|+..|++=|-.||+++.+|+.+||+. .|..|.++|..||+||++|+...+
T Consensus 277 RtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq 330 (953)
T KOG2588|consen 277 RTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQ 330 (953)
T ss_pred cchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhcccc
Confidence 46899999999999999999999999975 799999999999999999997543
No 53
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.74 E-value=0.019 Score=37.71 Aligned_cols=33 Identities=9% Similarity=0.144 Sum_probs=29.3
Q ss_pred EEEecCCCChHHHHHHHHHcCCCeeEEEEEEec
Q 029383 91 SICCEYRPELMSDLRQALDALPLKMLKAEISTL 123 (194)
Q Consensus 91 ~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~ 123 (194)
.+.++|+||.|.+|++++.+.|++|.+......
T Consensus 2 ~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~ 34 (73)
T cd04886 2 RVELPDRPGQLAKLLAVIAEAGANIIEVSHDRA 34 (73)
T ss_pred EEEeCCCCChHHHHHHHHHHcCCCEEEEEEEec
Confidence 467899999999999999999999998887654
No 54
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.46 E-value=0.024 Score=38.34 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=36.6
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEec-CCEEEEEEEE
Q 029383 89 KASICCEYRPELMSDLRQALDALPLKMLKAEISTL-GGRLKNVIVF 133 (194)
Q Consensus 89 ~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~-g~~~~~vf~v 133 (194)
++.+.+.++||++.+|+++|.+.|..|...+..+. ++.+.-.|.+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v 47 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISI 47 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEE
Confidence 57788999999999999999999999999887654 3555445555
No 55
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=96.46 E-value=0.052 Score=47.10 Aligned_cols=93 Identities=16% Similarity=0.189 Sum_probs=61.8
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEe--cCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHhcCC
Q 029383 87 LYKASICCEYRPELMSDLRQALDALPLKMLKAEIST--LGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKASP 164 (194)
Q Consensus 87 ~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist--~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~~~~ 164 (194)
.+.|.+.|.||||+..+|.++|.++|+.|.+.+.++ .+|.+.-.+.+..+ . .+...+.|+++|..+-...+-
T Consensus 6 ~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~--~----~~~~~~~L~~~L~~l~~~l~l 79 (286)
T PRK06027 6 RYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGD--G----LIFNLETLRADFAALAEEFEM 79 (286)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeC--C----CCCCHHHHHHHHHHHHHHhCC
Confidence 456889999999999999999999999999999999 77754333333211 1 112357888888877655433
Q ss_pred CCCCCCCCCCCCCcceeEeeecCCC
Q 029383 165 SPEYSPRTTLPNKRQRISFLDSSSS 189 (194)
Q Consensus 165 ~~~~~~~~~~~~k~~r~~~~~~~~~ 189 (194)
.-.. ....++.|+-+|-|.+.
T Consensus 80 ~i~l----~~~~~~~ri~vl~Sg~g 100 (286)
T PRK06027 80 DWRL----LDSAERKRVVILVSKED 100 (286)
T ss_pred EEEE----cccccCcEEEEEEcCCC
Confidence 2211 12333467766666553
No 56
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=95.85 E-value=0.032 Score=45.67 Aligned_cols=66 Identities=8% Similarity=0.153 Sum_probs=52.7
Q ss_pred eeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHH
Q 029383 86 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVL 159 (194)
Q Consensus 86 ~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l 159 (194)
.++.|.+.++||||+...|.++|.++|..|..++.+..||.+.-++.+... ......|+.+|...-
T Consensus 7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~--------~~~~~~le~~L~~l~ 72 (190)
T PRK11589 7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGS--------WNAITLIESTLPLKG 72 (190)
T ss_pred cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCC--------hhHHHHHHHHHHhhh
Confidence 467789999999999999999999999999999999999988766766211 123466677666554
No 57
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=95.79 E-value=0.094 Score=45.64 Aligned_cols=93 Identities=14% Similarity=0.201 Sum_probs=56.8
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEE--ecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHhcCCC
Q 029383 88 YKASICCEYRPELMSDLRQALDALPLKMLKAEIS--TLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKASPS 165 (194)
Q Consensus 88 v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Is--t~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~~~~~ 165 (194)
..|.+.|+|+||+.+.|.+.|.++|..|.+.+-. +..+.+.-.+.+ .+... .......++++|..+-..-+-.
T Consensus 10 ~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~-~~~~~----~~~~~~~l~~~l~~l~~~l~l~ 84 (289)
T PRK13010 10 YVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSF-HAQSA----EAASVDTFRQEFQPVAEKFDMQ 84 (289)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEE-EcCCC----CCCCHHHHHHHHHHHHHHhCCe
Confidence 4688999999999999999999999999999885 333322211112 11111 1124578888888876653332
Q ss_pred CCCCCCCCCCCCcceeEeeecCCC
Q 029383 166 PEYSPRTTLPNKRQRISFLDSSSS 189 (194)
Q Consensus 166 ~~~~~~~~~~~k~~r~~~~~~~~~ 189 (194)
-.- ....++.|+-+|-|.+.
T Consensus 85 ~~i----~~~~~~~kiavl~Sg~g 104 (289)
T PRK13010 85 WAI----HPDGQRPKVVIMVSKFD 104 (289)
T ss_pred EEE----ecCCCCeEEEEEEeCCC
Confidence 111 11122356766655543
No 58
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=95.74 E-value=0.071 Score=36.37 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=32.3
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEec
Q 029383 89 KASICCEYRPELMSDLRQALDALPLKMLKAEISTL 123 (194)
Q Consensus 89 ~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~ 123 (194)
.+++.|.||+|+|.+|+.++.+.|..+...++.+.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~ 36 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK 36 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence 46788999999999999999999999999999775
No 59
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=95.74 E-value=0.12 Score=32.49 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=34.2
Q ss_pred EEEecCCCChHHHHHHHHHcCCCeeEEEEEEecC-CEEEEEEEE
Q 029383 91 SICCEYRPELMSDLRQALDALPLKMLKAEISTLG-GRLKNVIVF 133 (194)
Q Consensus 91 ~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g-~~~~~vf~v 133 (194)
.+.+.++||.+.++++.|...++++....+...+ +...-.|.+
T Consensus 2 ~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~ 45 (71)
T cd04876 2 RVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTL 45 (71)
T ss_pred EEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEE
Confidence 5678999999999999999999999999887765 433333434
No 60
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=95.55 E-value=0.21 Score=32.53 Aligned_cols=44 Identities=14% Similarity=0.202 Sum_probs=35.4
Q ss_pred EEEEecCCCChHHHHHHHHHcCCCeeEEEEEEec--CCEEEEEEEE
Q 029383 90 ASICCEYRPELMSDLRQALDALPLKMLKAEISTL--GGRLKNVIVF 133 (194)
Q Consensus 90 I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~--g~~~~~vf~v 133 (194)
+.+.+.++||.|.+|+..|.+.|..+...+..+. ++...-+|.+
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 48 (72)
T cd04878 3 LSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVV 48 (72)
T ss_pred EEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEE
Confidence 5677899999999999999999999999988764 3445444555
No 61
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=95.45 E-value=0.25 Score=42.83 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=47.4
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEec--CCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHH-HHHh
Q 029383 89 KASICCEYRPELMSDLRQALDALPLKMLKAEISTL--GGRLKNVIVFTSCKEGNAEASQTLANDVQQALNS-VLEK 161 (194)
Q Consensus 89 ~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~--g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~-~l~~ 161 (194)
.|.+.|+|+||+.+.|.+.|.++|..|++.+-+.. +|++.-.+.+... +. ....+.++++|.. +-..
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~--~~----~~~~~~l~~~l~~~~~~~ 71 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE--GF----RLEESSLLAAFKSALAEK 71 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC--CC----CCCHHHHHHHHHHHHHHH
Confidence 36799999999999999999999999999998874 3554323333211 11 1235788888888 4443
No 62
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.35 E-value=0.18 Score=33.50 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=34.5
Q ss_pred EEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecC--CEEEEEEEE
Q 029383 90 ASICCEYRPELMSDLRQALDALPLKMLKAEISTLG--GRLKNVIVF 133 (194)
Q Consensus 90 I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g--~~~~~vf~v 133 (194)
+.+.+.|++|++.+++..|.+.|..+......+.. +...-+|.+
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~ 48 (79)
T cd04881 3 LRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVT 48 (79)
T ss_pred EEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEE
Confidence 56889999999999999999999999998876643 444333333
No 63
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=95.32 E-value=0.21 Score=43.43 Aligned_cols=91 Identities=11% Similarity=0.146 Sum_probs=55.9
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEec--CCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHhcCC
Q 029383 87 LYKASICCEYRPELMSDLRQALDALPLKMLKAEISTL--GGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKASP 164 (194)
Q Consensus 87 ~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~--g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~~~~ 164 (194)
.+.|.+.|+||||+..+|.+.|.++|+.|...+..+. ++.+.-.+.+ ....+ ...+.|+++|...-....-
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~--~~p~~-----~~~~~L~~~L~~l~~~l~l 79 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEF--HSEEG-----LDEDALRAGFAPIAARFGM 79 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEE--ecCCC-----CCHHHHHHHHHHHHHHhCc
Confidence 3568899999999999999999999999999988643 2222211222 11111 2357888888887554332
Q ss_pred CCCCCCCCCCCCCcceeEeeecCC
Q 029383 165 SPEYSPRTTLPNKRQRISFLDSSS 188 (194)
Q Consensus 165 ~~~~~~~~~~~~k~~r~~~~~~~~ 188 (194)
.-.. .. ..+..|+-+|-|.+
T Consensus 80 ~i~i---~~-~~~~~ri~vl~Sg~ 99 (286)
T PRK13011 80 QWEL---HD-PAARPKVLIMVSKF 99 (286)
T ss_pred EEEE---ee-cccCceEEEEEcCC
Confidence 2111 01 11225676666654
No 64
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=95.29 E-value=0.24 Score=33.67 Aligned_cols=42 Identities=7% Similarity=0.077 Sum_probs=34.4
Q ss_pred EEecCCCChHHHHHHHHHcCCCeeEEEEEEecCC-EEEEEEEE
Q 029383 92 ICCEYRPELMSDLRQALDALPLKMLKAEISTLGG-RLKNVIVF 133 (194)
Q Consensus 92 i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~-~~~~vf~v 133 (194)
+..+++||.|+++++.|..+|+.+.+.......+ .....|++
T Consensus 4 ~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~i 46 (75)
T cd04880 4 FSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFV 46 (75)
T ss_pred EEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEE
Confidence 5567899999999999999999999998776554 44566667
No 65
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=95.15 E-value=0.34 Score=33.37 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=36.3
Q ss_pred EEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecC-CEEEEEEEEee
Q 029383 90 ASICCEYRPELMSDLRQALDALPLKMLKAEISTLG-GRLKNVIVFTS 135 (194)
Q Consensus 90 I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g-~~~~~vf~v~~ 135 (194)
+.+..+++||.|.++++.|.++|+.+.+....... +....+|++..
T Consensus 4 l~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~ 50 (80)
T cd04905 4 IVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF 50 (80)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE
Confidence 45667899999999999999999999999876653 34456777733
No 66
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=95.11 E-value=0.1 Score=33.33 Aligned_cols=43 Identities=14% Similarity=0.212 Sum_probs=36.0
Q ss_pred EEEecCCCChHHHHHHHHHcCCCeeEEEEEEecC-CEEEEEEEE
Q 029383 91 SICCEYRPELMSDLRQALDALPLKMLKAEISTLG-GRLKNVIVF 133 (194)
Q Consensus 91 ~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g-~~~~~vf~v 133 (194)
.+..+++||.|.+++..|.+.|+.|....+...+ +...-.|.+
T Consensus 2 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v 45 (56)
T cd04889 2 SVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIF 45 (56)
T ss_pred EEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEE
Confidence 4678999999999999999999999888887655 666666666
No 67
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=95.10 E-value=0.03 Score=54.22 Aligned_cols=43 Identities=19% Similarity=0.122 Sum_probs=40.9
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEe
Q 029383 88 YKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFT 134 (194)
Q Consensus 88 v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~ 134 (194)
.++||.+.||+|+|..|+.+|. +|..|+++|.|..+.++|++.
T Consensus 632 ~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~ 674 (693)
T PRK00227 632 NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK 674 (693)
T ss_pred cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec
Confidence 5789999999999999999999 999999999999999999995
No 68
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=95.10 E-value=0.099 Score=33.92 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=36.6
Q ss_pred EEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecC--CEEEEEEEE
Q 029383 90 ASICCEYRPELMSDLRQALDALPLKMLKAEISTLG--GRLKNVIVF 133 (194)
Q Consensus 90 I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g--~~~~~vf~v 133 (194)
+.+.+.+++|.+.+|++.|.+.|+.|.+..+...+ +...-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 45789999999999999999999999999987754 555555555
No 69
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.08 E-value=0.15 Score=33.38 Aligned_cols=45 Identities=16% Similarity=0.176 Sum_probs=34.9
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecC-CEEEEEEEE
Q 029383 89 KASICCEYRPELMSDLRQALDALPLKMLKAEISTLG-GRLKNVIVF 133 (194)
Q Consensus 89 ~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g-~~~~~vf~v 133 (194)
.+.+.+.+++|.|.++++.|.+.+..+.+....+.+ +...-+|.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~ 47 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMEL 47 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEE
Confidence 356789999999999999999999999988877653 443333333
No 70
>PRK04435 hypothetical protein; Provisional
Probab=94.97 E-value=0.24 Score=38.75 Aligned_cols=50 Identities=18% Similarity=0.154 Sum_probs=40.6
Q ss_pred eeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEec-CCEEEEEEEEee
Q 029383 86 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTL-GGRLKNVIVFTS 135 (194)
Q Consensus 86 ~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~-g~~~~~vf~v~~ 135 (194)
..+.+.+.+.|+||+|.+|+++|.+.|..|...+.+.. +|.+.-.|.+..
T Consensus 68 r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVev 118 (147)
T PRK04435 68 KIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDT 118 (147)
T ss_pred cEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEe
Confidence 56788899999999999999999999999999887653 565555566633
No 71
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.84 E-value=0.46 Score=34.21 Aligned_cols=47 Identities=2% Similarity=-0.029 Sum_probs=37.7
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCC-EEEEEEEEe
Q 029383 88 YKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGG-RLKNVIVFT 134 (194)
Q Consensus 88 v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~-~~~~vf~v~ 134 (194)
+.+-+..+++||.|++++..|...|+.+.+-..-...+ .-...|+|.
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVD 62 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFIN 62 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEE
Confidence 44556678999999999999999999999998876543 346788883
No 72
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=94.78 E-value=0.13 Score=30.64 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=30.8
Q ss_pred EEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecC
Q 029383 90 ASICCEYRPELMSDLRQALDALPLKMLKAEISTLG 124 (194)
Q Consensus 90 I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g 124 (194)
|.+.|++.+|.+.+++++|...|+.+.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 35778999999999999999999999999887654
No 73
>PRK08577 hypothetical protein; Provisional
Probab=94.76 E-value=0.66 Score=35.53 Aligned_cols=48 Identities=21% Similarity=0.296 Sum_probs=38.1
Q ss_pred eeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecC--CEEEEEEEE
Q 029383 86 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLG--GRLKNVIVF 133 (194)
Q Consensus 86 ~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g--~~~~~vf~v 133 (194)
..+.+.+.+.|+||+|.+|++.|.+++..+.+.+..+.. +.+.-.|.+
T Consensus 55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~v 104 (136)
T PRK08577 55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIV 104 (136)
T ss_pred cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEE
Confidence 467788999999999999999999999999988876653 434334444
No 74
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=94.67 E-value=0.19 Score=33.41 Aligned_cols=43 Identities=12% Similarity=0.231 Sum_probs=35.8
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEE
Q 029383 89 KASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVF 133 (194)
Q Consensus 89 ~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v 133 (194)
.+.+..+|+||.|.++++.|.+.|+.|.+..+...++. .+|.+
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl 45 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRL 45 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEE
Confidence 46678999999999999999999999999888766653 45555
No 75
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=94.48 E-value=0.21 Score=43.06 Aligned_cols=72 Identities=10% Similarity=0.181 Sum_probs=49.4
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHhcC
Q 029383 88 YKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKAS 163 (194)
Q Consensus 88 v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~~~ 163 (194)
..+.++|+|++|+.+.|...|.+.|..|++++--+ +.....|+......... .+...+.+++++..+.+..+
T Consensus 8 ~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~--D~~~g~FFmR~~f~~~~--~~~~~~~l~~~f~~~a~~f~ 79 (287)
T COG0788 8 FILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFD--DPETGRFFMRVEFEGEG--GPLDREALRAAFAPLAEEFG 79 (287)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHcCCceeeccccc--ccccCeEEEEEEEecCC--CcccHHHHHHHHHHHHHhhC
Confidence 45789999999999999999999999999997763 33333444422222211 22455778888887665544
No 76
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.44 E-value=0.27 Score=33.14 Aligned_cols=34 Identities=9% Similarity=0.132 Sum_probs=29.8
Q ss_pred EEEEecCCCChHHHHHHHHHcCCCeeEEEEEEec
Q 029383 90 ASICCEYRPELMSDLRQALDALPLKMLKAEISTL 123 (194)
Q Consensus 90 I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~ 123 (194)
+.+.-+|+||-|.++++.|.++|..|.+......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 4567899999999999999999999998876654
No 77
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.44 E-value=0.41 Score=31.68 Aligned_cols=35 Identities=14% Similarity=0.243 Sum_probs=30.4
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEec
Q 029383 89 KASICCEYRPELMSDLRQALDALPLKMLKAEISTL 123 (194)
Q Consensus 89 ~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~ 123 (194)
.+.+.++|+||.|.++++.|.++|+.|........
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 35678999999999999999999999998876654
No 78
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.43 E-value=0.2 Score=32.56 Aligned_cols=44 Identities=14% Similarity=0.192 Sum_probs=34.0
Q ss_pred EEEEecCCCChHHHHHHHHHcCCCeeEEEEEEec--CCEEEEEEEE
Q 029383 90 ASICCEYRPELMSDLRQALDALPLKMLKAEISTL--GGRLKNVIVF 133 (194)
Q Consensus 90 I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~--g~~~~~vf~v 133 (194)
+.+.+.|+||.+.+++..|.++|..+........ ++...-.|.+
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v 47 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEV 47 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEe
Confidence 4678999999999999999999999998887652 3444333444
No 79
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=94.29 E-value=0.25 Score=47.94 Aligned_cols=66 Identities=14% Similarity=0.063 Sum_probs=53.5
Q ss_pred EEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHhcC
Q 029383 92 ICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKAS 163 (194)
Q Consensus 92 i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~~~ 163 (194)
+.++|++|+|++++..|.-+|+.|.+|++.+ +|.....|.|....+..+ ....++|++..++...-
T Consensus 552 ~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~ 617 (693)
T PRK00227 552 IWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDF-----DPQEFLQAYKSGVYSEL 617 (693)
T ss_pred EecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCC-----ChHHHHHHHHHhhcCCC
Confidence 3449999999999999999999999999999 888889999966444433 34778888888876533
No 80
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.17 E-value=0.39 Score=31.02 Aligned_cols=44 Identities=9% Similarity=0.024 Sum_probs=32.7
Q ss_pred EEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecC--CEEEEEEEE
Q 029383 90 ASICCEYRPELMSDLRQALDALPLKMLKAEISTLG--GRLKNVIVF 133 (194)
Q Consensus 90 I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g--~~~~~vf~v 133 (194)
+.+.-+|+||.|.+++..|.+.|+.|.+....... +...-+|.+
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~v 47 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRT 47 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEe
Confidence 45677899999999999999999999877664443 444333433
No 81
>PRK07334 threonine dehydratase; Provisional
Probab=94.17 E-value=0.46 Score=42.92 Aligned_cols=49 Identities=10% Similarity=0.135 Sum_probs=40.1
Q ss_pred ceeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEec-----CCEEEEEEEE
Q 029383 85 DFLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTL-----GGRLKNVIVF 133 (194)
Q Consensus 85 ~~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~-----g~~~~~vf~v 133 (194)
.+.+.|.|.+.||+|+|.+|+++|.+.++.|.+.+..+. ++...-.|.+
T Consensus 324 ~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i 377 (403)
T PRK07334 324 GRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVI 377 (403)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEE
Confidence 456889999999999999999999999999999998764 4554434444
No 82
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=93.87 E-value=0.51 Score=37.51 Aligned_cols=64 Identities=13% Similarity=0.223 Sum_probs=48.1
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecC--CEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHH
Q 029383 89 KASICCEYRPELMSDLRQALDALPLKMLKAEISTLG--GRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLE 160 (194)
Q Consensus 89 ~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g--~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~ 160 (194)
.+.+..+++||.|.+|...|...|+.|.+..+...+ +...-+|.+.. +....+.|..+|.+.++
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~--------d~~~i~qi~kQl~Kli~ 68 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG--------DDKVLEQITKQLNKLVD 68 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhcCcc
Confidence 367889999999999999999999999999887665 44444555521 12346788888887764
No 83
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=93.79 E-value=0.034 Score=43.94 Aligned_cols=50 Identities=24% Similarity=0.337 Sum_probs=43.6
Q ss_pred cccHHHHHHHHHHHHhHHHhhccCCC--CCCCChhhHHHHHHHHHHHHHHHH
Q 029383 6 NHSEAERRRRERINAHLDTLRGLVPP--NGKMDKATLLAEVIRQVKELKTNA 55 (194)
Q Consensus 6 ~h~~~Er~RR~~i~~~~~~Lr~lvP~--~~k~dk~sil~~ai~yi~~L~~~~ 55 (194)
-|+.-||+|=..+|+.|..||.++|. +.|..|.--|.-|..||-.|-+-.
T Consensus 81 ~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl 132 (173)
T KOG4447|consen 81 MANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVL 132 (173)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhcc
Confidence 48899999999999999999999994 577788888999999999887643
No 84
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.70 E-value=0.82 Score=30.28 Aligned_cols=45 Identities=9% Similarity=0.113 Sum_probs=33.9
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEec--CCEEEEEEEE
Q 029383 89 KASICCEYRPELMSDLRQALDALPLKMLKAEISTL--GGRLKNVIVF 133 (194)
Q Consensus 89 ~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~--g~~~~~vf~v 133 (194)
.+.+..+|+||.|.++++.|.+.|+.|.+....-. ++...-+|.+
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v 49 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRV 49 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEE
Confidence 56678999999999999999999999987754332 3444444444
No 85
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=93.43 E-value=0.52 Score=32.29 Aligned_cols=45 Identities=4% Similarity=0.093 Sum_probs=36.5
Q ss_pred EEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCE-EEEEEEEeecC
Q 029383 92 ICCEYRPELMSDLRQALDALPLKMLKAEISTLGGR-LKNVIVFTSCK 137 (194)
Q Consensus 92 i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~-~~~vf~v~~~~ 137 (194)
+..+++||.|++++..|...|+.+++-..-...+. ....|++ ++.
T Consensus 5 f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffv-d~~ 50 (74)
T cd04904 5 FSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFV-DCE 50 (74)
T ss_pred EEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEE-EEE
Confidence 45578999999999999999999999988765543 4678888 443
No 86
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=93.41 E-value=0.72 Score=36.85 Aligned_cols=64 Identities=14% Similarity=0.267 Sum_probs=47.8
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecC--CEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHH
Q 029383 89 KASICCEYRPELMSDLRQALDALPLKMLKAEISTLG--GRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLE 160 (194)
Q Consensus 89 ~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g--~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~ 160 (194)
.+.+..+++||.|.+|+..|...|+.|.+..+...+ +...-+|.+.. +....+.|..+|.+.++
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~--------~~~~i~qi~kQl~KLid 69 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG--------DEQVIEQITKQLNKLID 69 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhcccc
Confidence 467889999999999999999999999998887654 44444455521 12345788888888764
No 87
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=93.32 E-value=2.4 Score=34.66 Aligned_cols=72 Identities=10% Similarity=0.111 Sum_probs=47.3
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCC--EEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHh
Q 029383 87 LYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGG--RLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 161 (194)
Q Consensus 87 ~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~--~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~ 161 (194)
...+++...||||+..++.++|.+.|+.|.+-+..|.+. .-...|...-.-.-. .....+.|+.+|...-..
T Consensus 95 ~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP---~~~~~~~L~~~l~~l~~e 168 (190)
T PRK11589 95 TVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSP---ASQDAANIEQAFKALCTE 168 (190)
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcC---CCCCHHHHHHHHHHHHHH
Confidence 367889999999999999999999999998888777663 111122221111111 112256788887776544
No 88
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=92.85 E-value=0.86 Score=31.90 Aligned_cols=63 Identities=10% Similarity=0.153 Sum_probs=43.1
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecC--CEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHH
Q 029383 89 KASICCEYRPELMSDLRQALDALPLKMLKAEISTLG--GRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVL 159 (194)
Q Consensus 89 ~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g--~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l 159 (194)
.+.+..+++||.|.+++..|..-|..|.+-.+...+ +..+=++.+ .+ +....+.|..+|.+.+
T Consensus 4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~-~~-------~~~~i~qi~kQL~KLi 68 (76)
T PRK06737 4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTA-VC-------TENEATLLVSQLKKLI 68 (76)
T ss_pred EEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEE-EC-------CHHHHHHHHHHHhCCc
Confidence 467888999999999999999999999988887433 323323332 21 1234466677666543
No 89
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=92.84 E-value=1.1 Score=36.18 Aligned_cols=66 Identities=8% Similarity=0.122 Sum_probs=48.6
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEe--cCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHhc
Q 029383 89 KASICCEYRPELMSDLRQALDALPLKMLKAEIST--LGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKA 162 (194)
Q Consensus 89 ~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist--~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~~ 162 (194)
.+.+...|+||+|.+|...|...|+.|.+-.+.. ..|...-++.+. ++ ....+.|+.+|.+.++-.
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~---~~-----~~~ieqL~kQL~KLidVl 71 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP---GD-----DRTIEQLTKQLYKLVNIL 71 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE---CC-----HHHHHHHHHHHHHHhHhh
Confidence 4678899999999999999999999999988865 444444444441 11 122688899998887653
No 90
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=92.11 E-value=0.36 Score=34.96 Aligned_cols=68 Identities=9% Similarity=0.138 Sum_probs=51.4
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHh
Q 029383 88 YKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 161 (194)
Q Consensus 88 v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~ 161 (194)
..|.+...||||+.+.+..+|.++|+.|++..=+-..|++.=.+.| .+.. .......++..|.....+
T Consensus 4 avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV-~~~~-----~~~d~~~lr~~l~~~~~~ 71 (90)
T COG3830 4 AVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLV-DISK-----EVVDFAALRDELAAEGKK 71 (90)
T ss_pred EEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEE-cCCh-----HhccHHHHHHHHHHHHHh
Confidence 5688999999999999999999999999999888888887666666 2221 122345666666666554
No 91
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.04 E-value=1.2 Score=30.86 Aligned_cols=45 Identities=9% Similarity=0.113 Sum_probs=36.0
Q ss_pred EEecCCCChHHHHHHHHHcCCCeeEEEEEEecC-CEEEEEEEEeecC
Q 029383 92 ICCEYRPELMSDLRQALDALPLKMLKAEISTLG-GRLKNVIVFTSCK 137 (194)
Q Consensus 92 i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g-~~~~~vf~v~~~~ 137 (194)
+..+++||.|++++..|...|+.+.+-..-... ......|++ ++.
T Consensus 5 ~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~i-d~e 50 (74)
T cd04929 5 FSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFV-DCE 50 (74)
T ss_pred EEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEE
Confidence 445789999999999999999999999886653 335678888 443
No 92
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=91.43 E-value=0.15 Score=47.32 Aligned_cols=54 Identities=19% Similarity=0.219 Sum_probs=44.1
Q ss_pred cccccHHHHHHHHHHHHhHHHhhccCCCC----CCCChhhHHHHHHHHHHHHHHHHHH
Q 029383 4 LKNHSEAERRRRERINAHLDTLRGLVPPN----GKMDKATLLAEVIRQVKELKTNAIE 57 (194)
Q Consensus 4 ~~~h~~~Er~RR~~i~~~~~~Lr~lvP~~----~k~dk~sil~~ai~yi~~L~~~~~~ 57 (194)
.+.++..||-|=..||+.|.+|..+.-.- ..--|.-||..||.-|-.|+++|.|
T Consensus 527 R~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE 584 (632)
T KOG3910|consen 527 RMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE 584 (632)
T ss_pred HhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 45677889999777999999999885422 2235889999999999999999987
No 93
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.40 E-value=1.7 Score=28.94 Aligned_cols=33 Identities=15% Similarity=0.298 Sum_probs=27.6
Q ss_pred EEEecCCCChHHHHHHHHHcCCCeeEEEEEEecC
Q 029383 91 SICCEYRPELMSDLRQALDALPLKMLKAEISTLG 124 (194)
Q Consensus 91 ~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g 124 (194)
.+.-+++||-|.++++.+.. |..|...+....+
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~ 34 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQG 34 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCC
Confidence 45678999999999999999 9999887776544
No 94
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=91.15 E-value=0.2 Score=32.97 Aligned_cols=43 Identities=14% Similarity=0.096 Sum_probs=33.2
Q ss_pred EEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEE
Q 029383 91 SICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVF 133 (194)
Q Consensus 91 ~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v 133 (194)
-+.+.|+||++.+++..|.+.|..+...+..+.++.+.-.|.+
T Consensus 3 ~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~ 45 (69)
T cd04901 3 LHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI 45 (69)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence 3578999999999999999999999777665555555444444
No 95
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=91.13 E-value=1.4 Score=30.80 Aligned_cols=62 Identities=10% Similarity=0.224 Sum_probs=44.5
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEe--cCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHH
Q 029383 89 KASICCEYRPELMSDLRQALDALPLKMLKAEIST--LGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVL 159 (194)
Q Consensus 89 ~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist--~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l 159 (194)
.+.+...++||.|.+++..|+.-|..|.+-.+.. .++...=++.+ . .+ ...+.|...|.+.+
T Consensus 5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v--~-~~------~~i~ql~kQL~KL~ 68 (76)
T PRK11152 5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV--A-SE------RPIDLLSSQLNKLV 68 (76)
T ss_pred EEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE--C-CC------chHHHHHHHHhcCc
Confidence 4678889999999999999999999999998876 34444434444 2 12 23467777776654
No 96
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=91.01 E-value=0.86 Score=30.08 Aligned_cols=43 Identities=14% Similarity=0.253 Sum_probs=34.3
Q ss_pred EEEecCCCChHHHHHHHHHcCCCeeEEEEEEe--cCCEEEEEEEE
Q 029383 91 SICCEYRPELMSDLRQALDALPLKMLKAEIST--LGGRLKNVIVF 133 (194)
Q Consensus 91 ~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist--~g~~~~~vf~v 133 (194)
-+..+++||.+.++.+.|.++|+.|.+..... .++...-+|.+
T Consensus 3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v 47 (73)
T cd04902 3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV 47 (73)
T ss_pred EEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe
Confidence 35789999999999999999999998877654 45666655555
No 97
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=90.78 E-value=0.18 Score=47.34 Aligned_cols=38 Identities=37% Similarity=0.616 Sum_probs=34.0
Q ss_pred HHHHHHHHHhHHHhhccCCC----CCCCChhhHHHHHHHHHH
Q 029383 12 RRRRERINAHLDTLRGLVPP----NGKMDKATLLAEVIRQVK 49 (194)
Q Consensus 12 r~RR~~i~~~~~~Lr~lvP~----~~k~dk~sil~~ai~yi~ 49 (194)
++-|+|+|.-+..|.+|+|- ++|.||.|||.=+|.|++
T Consensus 34 KRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 34 KRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred hhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 34479999999999999993 589999999999999986
No 98
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=90.58 E-value=1.5 Score=31.33 Aligned_cols=65 Identities=8% Similarity=0.024 Sum_probs=45.1
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEE--EEEEEEeecCCCChhhhhhhHHHHHHHHHHHHH
Q 029383 89 KASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRL--KNVIVFTSCKEGNAEASQTLANDVQQALNSVLE 160 (194)
Q Consensus 89 ~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~--~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~ 160 (194)
.+.+..+++||.|.+|...|...|..|.+-.++...+.- +=++.+ .. + +....+.|...|.+.++
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv-~~-~-----d~~~ieqI~kQL~Klid 70 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQV-DI-Q-----DDTSLHILIKKLKQQIN 70 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEE-eC-C-----CHHHHHHHHHHHhCCcc
Confidence 367888999999999999999999999998887554332 323333 11 1 22345777777776543
No 99
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=90.54 E-value=1.5 Score=29.25 Aligned_cols=56 Identities=11% Similarity=0.195 Sum_probs=38.5
Q ss_pred CCCChHHHHHHHHHcCCCeeEEEEEEe--cCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHH
Q 029383 96 YRPELMSDLRQALDALPLKMLKAEIST--LGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVL 159 (194)
Q Consensus 96 dr~GlL~~I~~aL~~lgL~V~~A~Ist--~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l 159 (194)
++||.|.+|+..|..-|+.|.+-++.. .++...-++.+ .+ .. ..++.|..+|.+.+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v-~~-~~------~~i~~l~~Ql~Kli 58 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVV-SG-DD------REIEQLVKQLEKLI 58 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEE-ES--C------CHHHHHHHHHHCST
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEE-ee-Cc------hhHHHHHHHHhccC
Confidence 579999999999999999999999987 55655544444 22 11 23456666666543
No 100
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=90.27 E-value=1.9 Score=42.32 Aligned_cols=49 Identities=10% Similarity=0.105 Sum_probs=41.1
Q ss_pred ceeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEec--CCEEEEEEEE
Q 029383 85 DFLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTL--GGRLKNVIVF 133 (194)
Q Consensus 85 ~~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~--g~~~~~vf~v 133 (194)
.+.+.|.|.+.||+|+|.+|+.++.+.++.|..+++.+. ++.+.-.|.+
T Consensus 664 ~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~i 714 (743)
T PRK10872 664 GYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTI 714 (743)
T ss_pred eeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEE
Confidence 467888999999999999999999999999999999775 4555445555
No 101
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=89.98 E-value=0.33 Score=44.28 Aligned_cols=42 Identities=31% Similarity=0.431 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhHHHhhccCCCC----CCCChhhHHHHHHHHHHH
Q 029383 9 EAERRRRERINAHLDTLRGLVPPN----GKMDKATLLAEVIRQVKE 50 (194)
Q Consensus 9 ~~Er~RR~~i~~~~~~Lr~lvP~~----~k~dk~sil~~ai~yi~~ 50 (194)
-+-|.||++-|.-|.+|..++|-. +..||++|+.-|..|||-
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 356899999999999999999942 568999999999999994
No 102
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=89.67 E-value=0.26 Score=47.38 Aligned_cols=44 Identities=30% Similarity=0.516 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhHHHhhccCCC----CCCCChhhHHHHHHHHHHHHHH
Q 029383 9 EAERRRRERINAHLDTLRGLVPP----NGKMDKATLLAEVIRQVKELKT 53 (194)
Q Consensus 9 ~~Er~RR~~i~~~~~~Lr~lvP~----~~k~dk~sil~~ai~yi~~L~~ 53 (194)
-|-|-||.|=|+-|.+|..+||- .+..|||||+.=||.|++ |+.
T Consensus 52 dAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR-lrk 99 (768)
T KOG3558|consen 52 DAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR-LRK 99 (768)
T ss_pred hhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH-HHH
Confidence 35688999999999999999993 367899999999999998 443
No 103
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=88.63 E-value=2.9 Score=40.83 Aligned_cols=49 Identities=10% Similarity=0.161 Sum_probs=40.7
Q ss_pred ceeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCC-EEEEEEEE
Q 029383 85 DFLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGG-RLKNVIVF 133 (194)
Q Consensus 85 ~~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~-~~~~vf~v 133 (194)
.+.+.|.|.+.|++|+|.+|+.++.+.+..|.++++.+.++ .+.-.|.+
T Consensus 624 ~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~i 673 (702)
T PRK11092 624 EFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRL 673 (702)
T ss_pred eeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEE
Confidence 46788899999999999999999999999999999877754 44434444
No 104
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.20 E-value=1.3 Score=31.09 Aligned_cols=41 Identities=29% Similarity=0.432 Sum_probs=33.8
Q ss_pred EEEEecCCCChHHHHHHHHHcCCCeeEEEEEE--ecCCEEEEE
Q 029383 90 ASICCEYRPELMSDLRQALDALPLKMLKAEIS--TLGGRLKNV 130 (194)
Q Consensus 90 I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Is--t~g~~~~~v 130 (194)
|+++..-||-.|+|+.-||..|+..|-+|.|. ..+++--.+
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEv 45 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEV 45 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEE
Confidence 56778889999999999999999999999996 345555334
No 105
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=88.05 E-value=2.9 Score=30.65 Aligned_cols=66 Identities=8% Similarity=0.044 Sum_probs=44.4
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHH
Q 029383 88 YKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLE 160 (194)
Q Consensus 88 v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~ 160 (194)
..+.+..+++||+|.+|...|..-|..|.+-.+...+..-.+-+.+..+ +. ...+.|..+|.+.++
T Consensus 9 ~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~~------~~i~Qi~kQL~KLid 74 (96)
T PRK08178 9 VILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-DD------QRLEQMISQIEKLED 74 (96)
T ss_pred EEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-Cc------hHHHHHHHHHhCCcC
Confidence 3478889999999999999999999999888776554322222222222 11 235677777776643
No 106
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.88 E-value=3.2 Score=31.22 Aligned_cols=49 Identities=8% Similarity=0.059 Sum_probs=37.7
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCE-EEEEEEEeecC
Q 029383 88 YKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGR-LKNVIVFTSCK 137 (194)
Q Consensus 88 v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~-~~~vf~v~~~~ 137 (194)
+-+-+..+++||.|+++++.|...|+.+.+-..-...+. -...|+| ++.
T Consensus 42 tSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfI-die 91 (115)
T cd04930 42 ATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLV-RCE 91 (115)
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEE-EEE
Confidence 334455688999999999999999999999988766433 4567777 443
No 107
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=87.70 E-value=0.31 Score=41.64 Aligned_cols=47 Identities=28% Similarity=0.381 Sum_probs=41.0
Q ss_pred cHHHHHHHHHHHHhHHHhhccCCC---CCCCChhhHHHHHHHHHHHHHHH
Q 029383 8 SEAERRRRERINAHLDTLRGLVPP---NGKMDKATLLAEVIRQVKELKTN 54 (194)
Q Consensus 8 ~~~Er~RR~~i~~~~~~Lr~lvP~---~~k~dk~sil~~ai~yi~~L~~~ 54 (194)
+..||+|--.+|+-|..||.++|. ..|+.|.-.|.-|-+||..|++-
T Consensus 77 NaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~ 126 (254)
T KOG3898|consen 77 NARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEV 126 (254)
T ss_pred cchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccc
Confidence 567999999999999999999994 47788888999999999988763
No 108
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=87.41 E-value=3.8 Score=39.85 Aligned_cols=49 Identities=20% Similarity=0.223 Sum_probs=40.5
Q ss_pred ceeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecC-CEEEEEEEE
Q 029383 85 DFLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLG-GRLKNVIVF 133 (194)
Q Consensus 85 ~~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g-~~~~~vf~v 133 (194)
.+.+.|.|.+.|++|+|.+|+.++.+.+..|.+.++.+.+ +.+.-.|.+
T Consensus 608 ~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~i 657 (683)
T TIGR00691 608 RFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITV 657 (683)
T ss_pred eeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEE
Confidence 4678889999999999999999999999999999998774 444333444
No 109
>PRK11899 prephenate dehydratase; Provisional
Probab=86.34 E-value=5.5 Score=34.51 Aligned_cols=67 Identities=12% Similarity=0.007 Sum_probs=47.0
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecC-CEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHH
Q 029383 87 LYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLG-GRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLE 160 (194)
Q Consensus 87 ~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g-~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~ 160 (194)
.+.+-+..+++||.|++++..|...|+.+.+-..=... +....+|++.-. +... + ..++++|..+-.
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~e-g~~~--d----~~v~~aL~~l~~ 261 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIE-GHPE--D----RNVALALEELRF 261 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEE-CCCC--C----HHHHHHHHHHHH
Confidence 34455566799999999999999999999999987664 446789999433 2211 1 245666666533
No 110
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=86.22 E-value=5.4 Score=31.10 Aligned_cols=67 Identities=16% Similarity=0.237 Sum_probs=50.2
Q ss_pred eeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEE-ecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHH
Q 029383 86 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEIS-TLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSV 158 (194)
Q Consensus 86 ~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Is-t~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~ 158 (194)
..+.+.+.-+||.|.|+++++++...++.|+..+=+ ..+|++.-++.+...... ..++.|-.+|+++
T Consensus 71 ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ssm~------~~V~~ii~kl~k~ 138 (150)
T COG4492 71 RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSSME------KDVDKIIEKLRKV 138 (150)
T ss_pred eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchhhh------hhHHHHHHHHhcc
Confidence 556778889999999999999999999999888765 678888766666443222 2356666666553
No 111
>PRK06382 threonine dehydratase; Provisional
Probab=85.65 E-value=7.4 Score=35.18 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=32.8
Q ss_pred ceeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEE
Q 029383 85 DFLYKASICCEYRPELMSDLRQALDALPLKMLKAEIS 121 (194)
Q Consensus 85 ~~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Is 121 (194)
...+++.+.-+|+||.|.++++.+.+.|..|++....
T Consensus 328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~ 364 (406)
T PRK06382 328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVD 364 (406)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence 4567888999999999999999999999999887664
No 112
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=85.25 E-value=1.5 Score=37.61 Aligned_cols=50 Identities=28% Similarity=0.290 Sum_probs=41.2
Q ss_pred ccHHHHHHHHHHHHhHHHhhccCCCC---CCCChhhHHHHHHHHHHHHHHHHH
Q 029383 7 HSEAERRRRERINAHLDTLRGLVPPN---GKMDKATLLAEVIRQVKELKTNAI 56 (194)
Q Consensus 7 h~~~Er~RR~~i~~~~~~Lr~lvP~~---~k~dk~sil~~ai~yi~~L~~~~~ 56 (194)
-+..||+|-..+|..|..||..||.. .+..|---|+.|-.||--|-...+
T Consensus 178 anarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 178 ANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred cchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 35679999999999999999999964 556677789999999987765543
No 113
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=82.52 E-value=9.6 Score=33.15 Aligned_cols=68 Identities=12% Similarity=0.040 Sum_probs=48.8
Q ss_pred eeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCC-EEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHH
Q 029383 86 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGG-RLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLE 160 (194)
Q Consensus 86 ~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~-~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~ 160 (194)
..+.+-+..+++||.|++++..|...|++...-..-...+ .....|++ +..+... + ..+++||.++-.
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~i-D~eg~~~--~----~~v~~AL~el~~ 261 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFI-DIEGHID--D----PLVKEALEELKE 261 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEE-EEecCcC--c----HhHHHHHHHHHh
Confidence 3455556777999999999999999999999998876554 45788888 4433321 1 456667666533
No 114
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.77 E-value=15 Score=25.55 Aligned_cols=31 Identities=10% Similarity=0.189 Sum_probs=23.7
Q ss_pred EEEEecCCCChHHHHHHHHHcCCCeeEEEEEEe
Q 029383 90 ASICCEYRPELMSDLRQALDALPLKMLKAEIST 122 (194)
Q Consensus 90 I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist 122 (194)
+.+.-+|+||-|.+++++|. +-.|.......
T Consensus 4 l~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~ 34 (85)
T cd04906 4 LAVTIPERPGSFKKFCELIG--PRNITEFNYRY 34 (85)
T ss_pred EEEecCCCCcHHHHHHHHhC--CCceeEEEEEc
Confidence 56778999999999999999 55555554443
No 115
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=80.63 E-value=1.9 Score=34.85 Aligned_cols=64 Identities=14% Similarity=0.241 Sum_probs=51.7
Q ss_pred eeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHH
Q 029383 86 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNS 157 (194)
Q Consensus 86 ~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~ 157 (194)
.+..|.....||||+.-.|.++..+.|=.+..++++.+|+.+.-+..+.-. ...+..|+++|..
T Consensus 4 ~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisgs--------~dav~~le~~l~~ 67 (176)
T COG2716 4 HYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISGS--------WDAVTLLEATLPL 67 (176)
T ss_pred cEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEeeC--------HHHHHHHHHHhhc
Confidence 467789999999999999999999999999999999999988766666222 1235677777655
No 116
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=80.58 E-value=18 Score=32.17 Aligned_cols=37 Identities=11% Similarity=0.131 Sum_probs=32.0
Q ss_pred ceeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEE
Q 029383 85 DFLYKASICCEYRPELMSDLRQALDALPLKMLKAEIS 121 (194)
Q Consensus 85 ~~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Is 121 (194)
...+.+.+.-+|+||.|.++++.+.+.|..|.+....
T Consensus 303 gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~ 339 (380)
T TIGR01127 303 GRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHD 339 (380)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 3556788899999999999999999999999887654
No 117
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=80.10 E-value=44 Score=35.71 Aligned_cols=73 Identities=14% Similarity=0.117 Sum_probs=47.7
Q ss_pred eeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEE---EecCC--EEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHH
Q 029383 86 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEI---STLGG--RLKNVIVFTSCKEGNAEASQTLANDVQQALNSVL 159 (194)
Q Consensus 86 ~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~I---st~g~--~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l 159 (194)
..+.+.+.....+..|++++-.|+++||.|....- .+.++ ...+-|.+....+.. .+.....+.+.+++..+.
T Consensus 488 ~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~-~~~~~~~~~~~~a~~~v~ 565 (1528)
T PF05088_consen 488 GRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDA-LDLDDIRERFEEAFEAVW 565 (1528)
T ss_pred CeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCcc-ccHHHHHHHHHHHHHHHh
Confidence 45677788888999999999999999999988754 33222 347788885543332 112233344555555443
No 118
>PRK08198 threonine dehydratase; Provisional
Probab=79.22 E-value=22 Score=31.94 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=32.8
Q ss_pred ceeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEe
Q 029383 85 DFLYKASICCEYRPELMSDLRQALDALPLKMLKAEIST 122 (194)
Q Consensus 85 ~~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist 122 (194)
...+.+.+.-+|+||.|.++++.+.+.|..|...+...
T Consensus 325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~ 362 (404)
T PRK08198 325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDR 362 (404)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEE
Confidence 45677889999999999999999999999888777653
No 119
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=78.78 E-value=14 Score=36.16 Aligned_cols=49 Identities=14% Similarity=0.162 Sum_probs=41.6
Q ss_pred CceeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEE
Q 029383 84 ADFLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIV 132 (194)
Q Consensus 84 ~~~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~ 132 (194)
..+.+.|.|...+|+|+|.+|+++|.+.+..|.+.++.+.++++..+.+
T Consensus 624 ~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~ 672 (701)
T COG0317 624 QVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQF 672 (701)
T ss_pred cceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEE
Confidence 3577889999999999999999999999999999999887665544433
No 120
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=76.73 E-value=17 Score=23.18 Aligned_cols=33 Identities=9% Similarity=0.128 Sum_probs=26.1
Q ss_pred EEEEec---CCCChHHHHHHHHHcCCCeeEEEEEEe
Q 029383 90 ASICCE---YRPELMSDLRQALDALPLKMLKAEIST 122 (194)
Q Consensus 90 I~i~c~---dr~GlL~~I~~aL~~lgL~V~~A~Ist 122 (194)
|.+.+. +.+|++.+++++|.+.|+.|.-...++
T Consensus 4 isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 4 LALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 455554 679999999999999999997665544
No 121
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=76.49 E-value=24 Score=32.00 Aligned_cols=65 Identities=17% Similarity=0.143 Sum_probs=45.5
Q ss_pred EEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCC-EEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHh
Q 029383 90 ASICCEYRPELMSDLRQALDALPLKMLKAEISTLGG-RLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 161 (194)
Q Consensus 90 I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~-~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~ 161 (194)
+-+..+++||.|++++..|...|+...+-..=...+ ...++|++.-. +... + ..++++|..+-..
T Consensus 300 l~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~e-g~~~--d----~~~~~aL~~l~~~ 365 (386)
T PRK10622 300 LLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQ-ANLR--S----AEMQKALKELGEI 365 (386)
T ss_pred EEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEe-CCCC--C----HHHHHHHHHHHHh
Confidence 335557999999999999999999999998875544 46889999333 2211 1 2456666665443
No 122
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=74.29 E-value=22 Score=23.46 Aligned_cols=34 Identities=15% Similarity=0.117 Sum_probs=27.6
Q ss_pred eeEEEEEEec----CCCChHHHHHHHHHcCCCeeEEEE
Q 029383 86 FLYKASICCE----YRPELMSDLRQALDALPLKMLKAE 119 (194)
Q Consensus 86 ~~v~I~i~c~----dr~GlL~~I~~aL~~lgL~V~~A~ 119 (194)
.+..|.+.++ +.||.+.++..+|.+.|+.|.-..
T Consensus 5 ~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 5 DWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred CEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 3456677777 689999999999999999997776
No 123
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=73.17 E-value=5.3 Score=37.41 Aligned_cols=36 Identities=25% Similarity=0.399 Sum_probs=33.5
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecC
Q 029383 89 KASICCEYRPELMSDLRQALDALPLKMLKAEISTLG 124 (194)
Q Consensus 89 ~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g 124 (194)
+++|.|.||.|+-.+|++.|...++++....|...|
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 578999999999999999999999999999997764
No 124
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=72.06 E-value=9.6 Score=29.26 Aligned_cols=38 Identities=16% Similarity=0.258 Sum_probs=34.2
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCE
Q 029383 89 KASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGR 126 (194)
Q Consensus 89 ~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~ 126 (194)
.|++..+++||-|..++++|.+.|+.+.--.|+-.|++
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dF 42 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDF 42 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCc
Confidence 47889999999999999999999999999998877764
No 125
>PLN02317 arogenate dehydratase
Probab=66.65 E-value=48 Score=30.15 Aligned_cols=50 Identities=10% Similarity=0.090 Sum_probs=38.4
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCE---------------EEEEEEEeecCC
Q 029383 88 YKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGR---------------LKNVIVFTSCKE 138 (194)
Q Consensus 88 v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~---------------~~~vf~v~~~~~ 138 (194)
+.|-+.-+++||.|.+++.+|...|+.+.+-..-...+. ....||+ ++.+
T Consensus 284 TSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyV-D~eg 348 (382)
T PLN02317 284 TSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYV-DFEA 348 (382)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEE-EEEc
Confidence 344455578999999999999999999999988665443 4678888 4443
No 126
>PRK08526 threonine dehydratase; Provisional
Probab=64.89 E-value=68 Score=29.10 Aligned_cols=40 Identities=13% Similarity=0.144 Sum_probs=34.5
Q ss_pred ceeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecC
Q 029383 85 DFLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLG 124 (194)
Q Consensus 85 ~~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g 124 (194)
...+.+.+.-+|+||-|.++++.+.+.+.+|.........
T Consensus 324 ~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~ 363 (403)
T PRK08526 324 YRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFS 363 (403)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEecc
Confidence 4567788999999999999999999999999988775543
No 127
>PRK11898 prephenate dehydratase; Provisional
Probab=63.84 E-value=51 Score=28.44 Aligned_cols=47 Identities=4% Similarity=-0.058 Sum_probs=36.1
Q ss_pred EEEEEEecC-CCChHHHHHHHHHcCCCeeEEEEEEecCCE-EEEEEEEe
Q 029383 88 YKASICCEY-RPELMSDLRQALDALPLKMLKAEISTLGGR-LKNVIVFT 134 (194)
Q Consensus 88 v~I~i~c~d-r~GlL~~I~~aL~~lgL~V~~A~Ist~g~~-~~~vf~v~ 134 (194)
+.+-+..++ +||.|++++..|...|+.+++-..-...++ ....|++.
T Consensus 197 tslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd 245 (283)
T PRK11898 197 TSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFID 245 (283)
T ss_pred EEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEE
Confidence 334455555 599999999999999999999988765433 46788883
No 128
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=63.23 E-value=11 Score=30.60 Aligned_cols=74 Identities=8% Similarity=0.072 Sum_probs=46.3
Q ss_pred CceeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEe--cCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHH
Q 029383 84 ADFLYKASICCEYRPELMSDLRQALDALPLKMLKAEIST--LGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLE 160 (194)
Q Consensus 84 ~~~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist--~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~ 160 (194)
....+.+++...||||++.++.+.|..+|+.+-+-...| ..+.-..-|+.... ..-+ .......|++++...-+
T Consensus 89 ~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it-~~lP--a~~~i~~l~~~f~al~~ 164 (176)
T COG2716 89 NPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQIT-ARLP--ANLSISALRDAFEALCD 164 (176)
T ss_pred CCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhh-ccCC--CcCcHHHHHHHHHHHHH
Confidence 345677889999999999999999999998875544333 22222333444211 1111 22345678887776543
No 129
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=61.45 E-value=35 Score=20.91 Aligned_cols=32 Identities=13% Similarity=0.173 Sum_probs=25.1
Q ss_pred EEEEec---CCCChHHHHHHHHHcCCCeeEEEEEE
Q 029383 90 ASICCE---YRPELMSDLRQALDALPLKMLKAEIS 121 (194)
Q Consensus 90 I~i~c~---dr~GlL~~I~~aL~~lgL~V~~A~Is 121 (194)
|++.+. +.+|.+.+++++|.+.++.+.....+
T Consensus 3 i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~ 37 (65)
T cd04892 3 VSVVGAGMRGTPGVAARIFSALAEAGINIIMISQG 37 (65)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcC
Confidence 445443 67899999999999999999777553
No 130
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=61.34 E-value=42 Score=31.10 Aligned_cols=49 Identities=4% Similarity=-0.046 Sum_probs=37.2
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecC-CEEEEEEEEeecC
Q 029383 88 YKASICCEYRPELMSDLRQALDALPLKMLKAEISTLG-GRLKNVIVFTSCK 137 (194)
Q Consensus 88 v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g-~~~~~vf~v~~~~ 137 (194)
+-+-+...++||-|++++..|...|+.+++-..-... ..-...|+| ++.
T Consensus 17 TSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFV-D~e 66 (436)
T TIGR01268 17 TSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFV-EFD 66 (436)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEE-EEe
Confidence 3444556889999999999999999999999886543 333567888 443
No 131
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=60.93 E-value=1.9 Score=41.77 Aligned_cols=58 Identities=19% Similarity=0.273 Sum_probs=48.0
Q ss_pred cccccHHHHHHHHHHHHhHHHhhccCCCC-----CCCChhhHHHHHHHHHHHHHHHHHHHhcc
Q 029383 4 LKNHSEAERRRRERINAHLDTLRGLVPPN-----GKMDKATLLAEVIRQVKELKTNAIEASKG 61 (194)
Q Consensus 4 ~~~h~~~Er~RR~~i~~~~~~Lr~lvP~~-----~k~dk~sil~~ai~yi~~L~~~~~~l~~~ 61 (194)
.+.|+-+|.+||..+.-.|..|-++.-+. .|+.+..-++.++.||-.++++..+++++
T Consensus 652 ~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e 714 (856)
T KOG3582|consen 652 PITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEE 714 (856)
T ss_pred cccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchh
Confidence 36799999999999999999999998754 56666677999999999999877666554
No 132
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=60.45 E-value=43 Score=21.62 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=25.2
Q ss_pred EEEEEec---CCCChHHHHHHHHHcCCCeeEEEEEEe
Q 029383 89 KASICCE---YRPELMSDLRQALDALPLKMLKAEIST 122 (194)
Q Consensus 89 ~I~i~c~---dr~GlL~~I~~aL~~lgL~V~~A~Ist 122 (194)
+|.+.+. +.||++.+++.+|.+.|+.+. .+++
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~--~~~~ 37 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL--QTAD 37 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE--EEEc
Confidence 3455554 689999999999999999996 4444
No 133
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=57.50 E-value=79 Score=24.34 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=22.3
Q ss_pred EEEEecCCCChHHHHHHHHHcCCCeeE
Q 029383 90 ASICCEYRPELMSDLRQALDALPLKML 116 (194)
Q Consensus 90 I~i~c~dr~GlL~~I~~aL~~lgL~V~ 116 (194)
+-+.-+|+||-|+.|+++|-..++.+.
T Consensus 72 laVEmeD~PG~l~~I~~vl~d~diNld 98 (142)
T COG4747 72 LAVEMEDVPGGLSRIAEVLGDADINLD 98 (142)
T ss_pred EEEEecCCCCcHHHHHHHHhhcCcCce
Confidence 356778999999999999999876553
No 134
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=56.78 E-value=69 Score=22.80 Aligned_cols=64 Identities=8% Similarity=0.239 Sum_probs=47.7
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEec--CCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHH
Q 029383 88 YKASICCEYRPELMSDLRQALDALPLKMLKAEISTL--GGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLE 160 (194)
Q Consensus 88 v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~--g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~ 160 (194)
..+.+....+|+.|-++++..+.-|+.|-..++++. +|.+---|.| +.. ...+.|.-.|.++.+
T Consensus 4 yqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV--~s~-------R~~~lL~~QLeKl~D 69 (86)
T COG3978 4 YQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTV--DSD-------RSVDLLTSQLEKLYD 69 (86)
T ss_pred EEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEE--cCC-------CChHHHHHHHHHHcc
Confidence 346678899999999999999999999999999887 5555433444 211 235677788877754
No 135
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=55.44 E-value=14 Score=21.52 Aligned_cols=17 Identities=47% Similarity=0.790 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhHHHhhc
Q 029383 11 ERRRRERINAHLDTLRG 27 (194)
Q Consensus 11 Er~RR~~i~~~~~~Lr~ 27 (194)
=|+||++++.++..||.
T Consensus 13 Lrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 13 LRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 37889999999999884
No 136
>PRK14633 hypothetical protein; Provisional
Probab=53.06 E-value=1.1e+02 Score=23.93 Aligned_cols=54 Identities=13% Similarity=0.115 Sum_probs=39.2
Q ss_pred HHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHh
Q 029383 103 DLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 161 (194)
Q Consensus 103 ~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~ 161 (194)
-+..++.++|+++....+...++.+.-+|. ++.++. .-..+..+.++|..+++.
T Consensus 9 lv~p~~~~~G~eL~dve~~~~~~~~lrV~I---D~~~Gv--~lddC~~vSr~i~~~LD~ 62 (150)
T PRK14633 9 IVEPITADLGYILWGIEVVGSGKLTIRIFI---DHENGV--SVDDCQIVSKEISAVFDV 62 (150)
T ss_pred HHHHHHHHCCCEEEEEEEEeCCCcEEEEEE---eCCCCC--CHHHHHHHHHHHHHHhcc
Confidence 455678899999999999887776554544 333332 345678999999999985
No 137
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.93 E-value=56 Score=20.58 Aligned_cols=33 Identities=9% Similarity=0.037 Sum_probs=25.7
Q ss_pred EEEEec---CCCChHHHHHHHHHcCCCeeEEEEEEe
Q 029383 90 ASICCE---YRPELMSDLRQALDALPLKMLKAEIST 122 (194)
Q Consensus 90 I~i~c~---dr~GlL~~I~~aL~~lgL~V~~A~Ist 122 (194)
|.+.+. +.+|++.+++.+|.+.|+.+.-...+.
T Consensus 4 isivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 4 IMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 445554 578999999999999999997665544
No 138
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=52.64 E-value=8 Score=30.78 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhHHHhhccCCCC
Q 029383 10 AERRRRERINAHLDTLRGLVPPN 32 (194)
Q Consensus 10 ~Er~RR~~i~~~~~~Lr~lvP~~ 32 (194)
.||.|-.+++..+.-|++|+|+.
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgs 51 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGS 51 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCC
Confidence 48888889999999999999964
No 139
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=52.47 E-value=1.2e+02 Score=32.73 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=29.1
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeeEEE
Q 029383 87 LYKASICCEYRPELMSDLRQALDALPLKMLKA 118 (194)
Q Consensus 87 ~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A 118 (194)
.+.|+|.|+|.|.|+..|..+|..+|+.|+..
T Consensus 17 ~TvI~IV~dDmPFLVDSV~~~L~r~gl~I~~i 48 (1528)
T PF05088_consen 17 HTVIEIVTDDMPFLVDSVRMELNRQGLTIHLI 48 (1528)
T ss_pred CeEEEEEcCCCCcHHHHHHHHHHhCCCceEEE
Confidence 67889999999999999999999999998654
No 140
>PRK14637 hypothetical protein; Provisional
Probab=52.31 E-value=1.1e+02 Score=23.97 Aligned_cols=60 Identities=13% Similarity=0.161 Sum_probs=43.4
Q ss_pred CCChHHHHHHHHHcCCCeeEEEEEEecCCE-EEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHh
Q 029383 97 RPELMSDLRQALDALPLKMLKAEISTLGGR-LKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 161 (194)
Q Consensus 97 r~GlL~~I~~aL~~lgL~V~~A~Ist~g~~-~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~ 161 (194)
.-|....+-.+++++|+++....+...++. +.-+|+ ++.++. .-..+..+.+++..+++.
T Consensus 7 ~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~I---D~~~gV--~iddC~~vSr~Is~~LD~ 67 (151)
T PRK14637 7 DLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVI---YSAGGV--GLDDCARVHRILVPRLEA 67 (151)
T ss_pred cccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEE---ECCCCC--CHHHHHHHHHHHHHHhcc
Confidence 457788888999999999999999887654 554444 233332 345668888988888864
No 141
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.90 E-value=62 Score=20.51 Aligned_cols=29 Identities=3% Similarity=-0.066 Sum_probs=24.0
Q ss_pred CCCChHHHHHHHHHcCCCeeEEEEEEecC
Q 029383 96 YRPELMSDLRQALDALPLKMLKAEISTLG 124 (194)
Q Consensus 96 dr~GlL~~I~~aL~~lgL~V~~A~Ist~g 124 (194)
+++|.+.+++++|.+.|+++.-...++.+
T Consensus 13 ~~~~~~~~if~~L~~~~I~v~~i~q~~s~ 41 (66)
T cd04919 13 NMIGIAGRMFTTLADHRINIEMISQGASE 41 (66)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEEecCcc
Confidence 57999999999999999999766555533
No 142
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=48.60 E-value=20 Score=32.84 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=32.2
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecC
Q 029383 89 KASICCEYRPELMSDLRQALDALPLKMLKAEISTLG 124 (194)
Q Consensus 89 ~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g 124 (194)
+++|.|+||-|+.-++++.|-.-++++....|...|
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid~~~ 37 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG 37 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeecCCC
Confidence 578999999999999999999999999999985544
No 143
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=47.91 E-value=75 Score=29.68 Aligned_cols=50 Identities=8% Similarity=-0.025 Sum_probs=38.2
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEE-E-EEEEEeecC
Q 029383 87 LYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRL-K-NVIVFTSCK 137 (194)
Q Consensus 87 ~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~-~-~vf~v~~~~ 137 (194)
.+.|-+...+++|-|++++..|...|+.+++-..-...+.. . ..|+| ++.
T Consensus 31 ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfV-D~E 82 (464)
T TIGR01270 31 RLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLV-DVE 82 (464)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEE-EEE
Confidence 34455666889999999999999999999999887654433 3 57777 443
No 144
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=47.59 E-value=95 Score=25.36 Aligned_cols=44 Identities=20% Similarity=0.157 Sum_probs=34.5
Q ss_pred EEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEE
Q 029383 90 ASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVF 133 (194)
Q Consensus 90 I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v 133 (194)
+++..+++||.|.++...+.++|-.|+.++--..++--...+|.
T Consensus 5 lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYm 48 (218)
T COG1707 5 LSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYM 48 (218)
T ss_pred eEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEE
Confidence 57889999999999999999999999999876554432334444
No 145
>PRK08818 prephenate dehydrogenase; Provisional
Probab=46.62 E-value=59 Score=29.31 Aligned_cols=43 Identities=12% Similarity=0.056 Sum_probs=32.7
Q ss_pred EEEEec-CCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEE
Q 029383 90 ASICCE-YRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVF 133 (194)
Q Consensus 90 I~i~c~-dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v 133 (194)
+.+.-+ |+||.|++|+..|...|+.+.+-++......- +.|++
T Consensus 298 l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~-y~f~i 341 (370)
T PRK08818 298 LSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGE-LHFRI 341 (370)
T ss_pred EEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCce-EEEEE
Confidence 334445 99999999999999999999999984433333 33777
No 146
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=46.23 E-value=48 Score=28.76 Aligned_cols=65 Identities=9% Similarity=0.140 Sum_probs=44.8
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEE--EEEEeecCCCChhhhhhhHHHHHHHHHHHHH
Q 029383 88 YKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKN--VIVFTSCKEGNAEASQTLANDVQQALNSVLE 160 (194)
Q Consensus 88 v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~--vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~ 160 (194)
-.|...-.+.||.+.+|..+|..-|..|-+--+.-..+.... ++++ +..+ ..+++.+++|.+.++
T Consensus 78 HvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl--~Gtd------~VveQa~rQiedlVn 144 (309)
T KOG2663|consen 78 HVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVL--QGTD------GVVEQARRQIEDLVN 144 (309)
T ss_pred eeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEE--eccH------HHHHHHHHHHHHhhh
Confidence 446677789999999999999999999988877655555443 4444 3221 234666677776553
No 147
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.84 E-value=94 Score=21.10 Aligned_cols=26 Identities=4% Similarity=-0.078 Sum_probs=22.8
Q ss_pred ecCCCChHHHHHHHHHcCCCeeEEEE
Q 029383 94 CEYRPELMSDLRQALDALPLKMLKAE 119 (194)
Q Consensus 94 c~dr~GlL~~I~~aL~~lgL~V~~A~ 119 (194)
.++.+|.+.+|+++|.+.|+.|....
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI~ 36 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLIT 36 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEe
Confidence 35789999999999999999988774
No 148
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.96 E-value=85 Score=20.34 Aligned_cols=30 Identities=3% Similarity=-0.116 Sum_probs=24.8
Q ss_pred CCCChHHHHHHHHHcCCCeeEEEEEEecCC
Q 029383 96 YRPELMSDLRQALDALPLKMLKAEISTLGG 125 (194)
Q Consensus 96 dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~ 125 (194)
+.+|++.+++++|.+.|+.|.-...++.+-
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~ 41 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASKV 41 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccc
Confidence 458899999999999999997777666554
No 149
>PRK08639 threonine dehydratase; Validated
Probab=44.90 E-value=1.8e+02 Score=26.42 Aligned_cols=37 Identities=8% Similarity=0.002 Sum_probs=28.9
Q ss_pred ceeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEE
Q 029383 85 DFLYKASICCEYRPELMSDLRQALDALPLKMLKAEIS 121 (194)
Q Consensus 85 ~~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Is 121 (194)
...+.+.+.-+||||-|.++++.+-..+-+|...+..
T Consensus 334 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~ 370 (420)
T PRK08639 334 GLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYL 370 (420)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence 4567888999999999999999666655577766554
No 150
>PRK14646 hypothetical protein; Provisional
Probab=44.72 E-value=1.5e+02 Score=23.24 Aligned_cols=58 Identities=14% Similarity=0.099 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCCeeEEEEEEecCC-EEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHh
Q 029383 101 MSDLRQALDALPLKMLKAEISTLGG-RLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 161 (194)
Q Consensus 101 L~~I~~aL~~lgL~V~~A~Ist~g~-~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~ 161 (194)
..-+...++++|+++....+...++ .+.-+|.- ...+++. .-..+..+.+++..+++.
T Consensus 10 ~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~ID-k~~g~gV--tldDC~~vSr~is~~LD~ 68 (155)
T PRK14646 10 EILLEKVANEFDLKICSLNIQTNQNPIVIKIIIK-KTNGDDI--SLDDCALFNTPASEEIEN 68 (155)
T ss_pred HHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEE-CCCCCCc--cHHHHHHHHHHHHHHhCc
Confidence 3445667889999999999988765 44544432 2222222 334568999999999974
No 151
>PRK12483 threonine dehydratase; Reviewed
Probab=43.84 E-value=1.8e+02 Score=27.56 Aligned_cols=50 Identities=10% Similarity=0.021 Sum_probs=35.4
Q ss_pred ceeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeec
Q 029383 85 DFLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSC 136 (194)
Q Consensus 85 ~~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~ 136 (194)
...+.+.+.-+|+||-|.++++.|-.. +|+..+....+.+-..+++....
T Consensus 343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~ 392 (521)
T PRK12483 343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQT 392 (521)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEe
Confidence 456777888999999999999999888 67666665444333445544343
No 152
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=43.78 E-value=83 Score=19.93 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=22.4
Q ss_pred ecCCCChHHHHHHHHHcCCCeeEEEE
Q 029383 94 CEYRPELMSDLRQALDALPLKMLKAE 119 (194)
Q Consensus 94 c~dr~GlL~~I~~aL~~lgL~V~~A~ 119 (194)
.++.+|.+.+++++|.+.|+.|.-..
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~ 34 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIV 34 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEE
Confidence 45789999999999999999997554
No 153
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=43.02 E-value=2.6e+02 Score=25.34 Aligned_cols=37 Identities=8% Similarity=0.028 Sum_probs=30.3
Q ss_pred ceeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEE
Q 029383 85 DFLYKASICCEYRPELMSDLRQALDALPLKMLKAEIS 121 (194)
Q Consensus 85 ~~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Is 121 (194)
...+.+.+.-+|+||-|.++++.+-..+-+|...+.-
T Consensus 323 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~ 359 (409)
T TIGR02079 323 GLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYT 359 (409)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 4567788999999999999999777776688877665
No 154
>PRK14632 hypothetical protein; Provisional
Probab=42.59 E-value=1.4e+02 Score=23.84 Aligned_cols=53 Identities=19% Similarity=0.181 Sum_probs=36.3
Q ss_pred HHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHh
Q 029383 104 LRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 161 (194)
Q Consensus 104 I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~ 161 (194)
+-.++.++|+++....+...+..+.-+|+ ++.++. .-..+..+.++|..+|+.
T Consensus 14 i~pv~~~~G~eLvdve~~~~~~~~lrV~I---D~~~GV--~ldDC~~vSr~is~~LD~ 66 (172)
T PRK14632 14 AGPFLASLGLELWGIELSYGGRTVVRLFV---DGPEGV--TIDQCAEVSRHVGLALEV 66 (172)
T ss_pred HHHHHHHCCCEEEEEEEEeCCCcEEEEEE---ECCCCC--CHHHHHHHHHHHHHHhcc
Confidence 34457889999999999864444444443 333332 345678999999999985
No 155
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=42.31 E-value=62 Score=21.69 Aligned_cols=25 Identities=4% Similarity=-0.085 Sum_probs=21.7
Q ss_pred cCCCChHHHHHHHHHcCCCeeEEEE
Q 029383 95 EYRPELMSDLRQALDALPLKMLKAE 119 (194)
Q Consensus 95 ~dr~GlL~~I~~aL~~lgL~V~~A~ 119 (194)
.+.+|++.+++++|.+.|+.+....
T Consensus 12 ~~~~g~~~~if~~L~~~~I~v~~i~ 36 (75)
T cd04912 12 LGAHGFLAKVFEIFAKHGLSVDLIS 36 (75)
T ss_pred CCCccHHHHHHHHHHHcCCeEEEEE
Confidence 3679999999999999999996663
No 156
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=41.49 E-value=88 Score=19.56 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=22.6
Q ss_pred CCCChHHHHHHHHHcCCCeeEEEEEEe
Q 029383 96 YRPELMSDLRQALDALPLKMLKAEIST 122 (194)
Q Consensus 96 dr~GlL~~I~~aL~~lgL~V~~A~Ist 122 (194)
+.+|++.+++++|.+.|+.+.-...+.
T Consensus 13 ~~~~~~~~i~~~L~~~~I~v~~i~q~~ 39 (66)
T cd04924 13 GTPGVAGRVFGALGKAGINVIMISQGS 39 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 578999999999999999997665544
No 157
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=41.18 E-value=62 Score=29.41 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=36.8
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEE
Q 029383 89 KASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVF 133 (194)
Q Consensus 89 ~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v 133 (194)
++-+.-.|+||.+.+|...|.+.|+.|-.-++...++.+..+|-+
T Consensus 340 rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~ 384 (409)
T PRK11790 340 RLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV 384 (409)
T ss_pred eEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe
Confidence 344567899999999999999999999888888888777655544
No 158
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=40.69 E-value=78 Score=18.74 Aligned_cols=26 Identities=15% Similarity=0.103 Sum_probs=21.7
Q ss_pred CCCChHHHHHHHHHcCCCeeEEEEEE
Q 029383 96 YRPELMSDLRQALDALPLKMLKAEIS 121 (194)
Q Consensus 96 dr~GlL~~I~~aL~~lgL~V~~A~Is 121 (194)
+.+|.+.+++++|.+.++.+.....+
T Consensus 12 ~~~~~~~~i~~~l~~~~i~i~~i~~~ 37 (60)
T cd04868 12 GTPGVAAKIFSALAEAGINVDMISQS 37 (60)
T ss_pred CCCCHHHHHHHHHHHCCCcEEEEEcC
Confidence 47899999999999999998766443
No 159
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=40.50 E-value=93 Score=19.56 Aligned_cols=24 Identities=4% Similarity=-0.007 Sum_probs=21.6
Q ss_pred CCCChHHHHHHHHHcCCCeeEEEE
Q 029383 96 YRPELMSDLRQALDALPLKMLKAE 119 (194)
Q Consensus 96 dr~GlL~~I~~aL~~lgL~V~~A~ 119 (194)
.++|...+|+++|.+.|+.+....
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i~ 35 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIP 35 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEEe
Confidence 678999999999999999998873
No 160
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=39.94 E-value=1.2e+02 Score=24.38 Aligned_cols=69 Identities=12% Similarity=0.207 Sum_probs=47.9
Q ss_pred EEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCC-EEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHhcCCC
Q 029383 90 ASICCEYRPELMSDLRQALDALPLKMLKAEISTLGG-RLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKASPS 165 (194)
Q Consensus 90 I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~-~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~~~~~ 165 (194)
+.+.-.+.||.|.++...|...|+.+-+-.+...+. .......+... . ....++|...|.++++-.+-.
T Consensus 7 lsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g-~------~~~~EQi~kQL~kLidV~kV~ 76 (163)
T COG0440 7 LSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG-D------EQVLEQIIKQLNKLIDVLKVL 76 (163)
T ss_pred EEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC-C------cchHHHHHHHHHhhccceeEE
Confidence 456678999999999999999999998888864433 23333333222 1 134578888999988765543
No 161
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=39.16 E-value=8.1 Score=37.66 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=43.1
Q ss_pred ccccHHHHHHHHHHHHhHHHhhccCCC-----CCCCChhhHHHHHHHHHHHHHHHHHHHhc
Q 029383 5 KNHSEAERRRRERINAHLDTLRGLVPP-----NGKMDKATLLAEVIRQVKELKTNAIEASK 60 (194)
Q Consensus 5 ~~h~~~Er~RR~~i~~~~~~Lr~lvP~-----~~k~dk~sil~~ai~yi~~L~~~~~~l~~ 60 (194)
..|+.++|++|..+-++|..|-+|.|. ..+..+++||. +.++.+++.-+.+.+
T Consensus 789 a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e 846 (856)
T KOG3582|consen 789 AGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTE 846 (856)
T ss_pred cchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHh
Confidence 468899999999999999999999994 36678999998 677777776555443
No 162
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=38.85 E-value=2.2e+02 Score=23.29 Aligned_cols=42 Identities=10% Similarity=0.079 Sum_probs=33.7
Q ss_pred EEecCCCChHHHHHHHHHcCCCeeEEEEEEec--CCEEEEEEEE
Q 029383 92 ICCEYRPELMSDLRQALDALPLKMLKAEISTL--GGRLKNVIVF 133 (194)
Q Consensus 92 i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~--g~~~~~vf~v 133 (194)
+...|+||.+-+|...|-+.++.|-..+++.. ++.+.-++.+
T Consensus 153 ~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v 196 (208)
T TIGR00719 153 LEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI 196 (208)
T ss_pred EEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe
Confidence 45579999999999999999999999999864 4655544444
No 163
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=37.51 E-value=2.4e+02 Score=26.45 Aligned_cols=65 Identities=9% Similarity=0.038 Sum_probs=41.0
Q ss_pred ceeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHH
Q 029383 85 DFLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNS 157 (194)
Q Consensus 85 ~~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~ 157 (194)
.....+.+.-+++||-|.+++++|.. -.|+..+..-.+.....+|+..... + ....+.|.++|.+
T Consensus 323 ~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie~~--~----~~~~~~l~~~L~~ 387 (499)
T TIGR01124 323 QREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQLS--N----PQERQEILARLND 387 (499)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEEeC--C----HHHHHHHHHHHHH
Confidence 45677889999999999999999987 3555555543333334555554432 1 1234555555544
No 164
>PRK09224 threonine dehydratase; Reviewed
Probab=37.19 E-value=3e+02 Score=25.77 Aligned_cols=50 Identities=6% Similarity=-0.039 Sum_probs=33.6
Q ss_pred ceeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeec
Q 029383 85 DFLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSC 136 (194)
Q Consensus 85 ~~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~ 136 (194)
...+.+.+.-++|||-|.++++.|. +-.|+..+..-.+.....+|+....
T Consensus 326 ~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~ 375 (504)
T PRK09224 326 QREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQL 375 (504)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEe
Confidence 3567788999999999999999998 4555555544333333345555443
No 165
>PRK14639 hypothetical protein; Provisional
Probab=36.48 E-value=2e+02 Score=22.19 Aligned_cols=53 Identities=17% Similarity=0.296 Sum_probs=37.5
Q ss_pred HHHHHHcCCCeeEEEEEEecCCE-EEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHh
Q 029383 104 LRQALDALPLKMLKAEISTLGGR-LKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 161 (194)
Q Consensus 104 I~~aL~~lgL~V~~A~Ist~g~~-~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~ 161 (194)
+-.+++++|+++....+...++. +.-+| + +..++. .-..+..+.++|..+|+.
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~-I--d~~~gv--~iddC~~vSr~is~~LD~ 56 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYRVY-I--TKEGGV--NLDDCERLSELLSPIFDV 56 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEEEE-E--eCCCCC--CHHHHHHHHHHHHHHhcc
Confidence 44578899999999999987664 44343 3 233332 345678999999999985
No 166
>PRK06349 homoserine dehydrogenase; Provisional
Probab=34.75 E-value=1.3e+02 Score=27.38 Aligned_cols=35 Identities=6% Similarity=0.126 Sum_probs=28.9
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEe
Q 029383 88 YKASICCEYRPELMSDLRQALDALPLKMLKAEIST 122 (194)
Q Consensus 88 v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist 122 (194)
..+.+...|+||.|.+|...|.+.++.+.+..-..
T Consensus 349 yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~ 383 (426)
T PRK06349 349 YYLRLLVADKPGVLAKIAAIFAENGISIESILQKG 383 (426)
T ss_pred EEEEEEecCCcchHHHHHHHHhhcCccEEEEEecc
Confidence 45667788999999999999999999988765443
No 167
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.84 E-value=75 Score=21.98 Aligned_cols=25 Identities=4% Similarity=0.026 Sum_probs=22.3
Q ss_pred cCCCChHHHHHHHHHcCCCeeEEEE
Q 029383 95 EYRPELMSDLRQALDALPLKMLKAE 119 (194)
Q Consensus 95 ~dr~GlL~~I~~aL~~lgL~V~~A~ 119 (194)
++.||.+.+|+++|.+.|+.|....
T Consensus 12 ~~~~g~~a~IF~~La~~~InVDmI~ 36 (78)
T cd04933 12 LGQYGFLAKVFSIFETLGISVDVVA 36 (78)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEE
Confidence 4679999999999999999988774
No 168
>PRK14647 hypothetical protein; Provisional
Probab=32.04 E-value=2.5e+02 Score=22.03 Aligned_cols=53 Identities=23% Similarity=0.359 Sum_probs=37.3
Q ss_pred HHHHHHcCCCeeEEEEEEecCC-EEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHh
Q 029383 104 LRQALDALPLKMLKAEISTLGG-RLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 161 (194)
Q Consensus 104 I~~aL~~lgL~V~~A~Ist~g~-~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~ 161 (194)
+-.++.++|+++....+...++ .+.-+|. +..++. .-..+..+.+++..+|+.
T Consensus 14 i~~~~~~~G~~L~dv~~~~~~~~~~lrV~I---D~~~gv--slddC~~vSr~is~~LD~ 67 (159)
T PRK14647 14 AEQVLSSLGLELVELEYKREGREMVLRLFI---DKEGGV--NLDDCAEVSRELSEILDV 67 (159)
T ss_pred HHHHHHHCCCEEEEEEEEecCCCeEEEEEE---eCCCCC--CHHHHHHHHHHHHHHHcc
Confidence 4456889999999999988765 4444443 333332 345678999999999985
No 169
>PRK14645 hypothetical protein; Provisional
Probab=31.74 E-value=2.6e+02 Score=22.02 Aligned_cols=59 Identities=20% Similarity=0.229 Sum_probs=39.5
Q ss_pred hHHHHHHHHHcCCCeeEEEEEEecC-CEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHh
Q 029383 100 LMSDLRQALDALPLKMLKAEISTLG-GRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 161 (194)
Q Consensus 100 lL~~I~~aL~~lgL~V~~A~Ist~g-~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~ 161 (194)
+..-+-..++++|+++....+...+ ..+.-+|+- ...+++. .-..+..+.+++..+|+.
T Consensus 11 i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID-~~~~~~v--~lddC~~vSr~is~~LD~ 70 (154)
T PRK14645 11 LQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRID-RKDEQPV--TVEDLERASRALEAELDR 70 (154)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEE-CCCCCCc--CHHHHHHHHHHHHHHhcc
Confidence 4444566788999999999998765 455544442 2112222 334678899999999975
No 170
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.20 E-value=2.7e+02 Score=22.04 Aligned_cols=52 Identities=19% Similarity=0.416 Sum_probs=37.3
Q ss_pred HHHHHHcCCCeeEEEEEEecC-CEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHH
Q 029383 104 LRQALDALPLKMLKAEISTLG-GRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLE 160 (194)
Q Consensus 104 I~~aL~~lgL~V~~A~Ist~g-~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~ 160 (194)
+-..++.+|+++...++...| +.+.-+|. ++.++. .-..++.+.+++..+++
T Consensus 14 iep~~~~lG~ELv~ve~~~~~~~~~lrI~i---d~~g~v--~lddC~~vSr~is~~LD 66 (153)
T COG0779 14 IEPVVESLGFELVDVEFVKEGRDSVLRIYI---DKEGGV--TLDDCADVSRAISALLD 66 (153)
T ss_pred HHHhHhhcCcEEEEEEEEEcCCCcEEEEEe---CCCCCC--CHHHHHHHHHHHHHHhc
Confidence 344578899999999999988 45554432 333332 34567899999999998
No 171
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=29.43 E-value=93 Score=20.42 Aligned_cols=42 Identities=31% Similarity=0.426 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhHHHhhccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHh
Q 029383 11 ERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELKTNAIEAS 59 (194)
Q Consensus 11 Er~RR~~i~~~~~~Lr~lvP~~~k~dk~sil~~ai~yi~~L~~~~~~l~ 59 (194)
=|..|=.+.+++..+..++- .++ .++|.+||+++-+.+++..
T Consensus 16 lR~~RHD~~NhLqvI~gllq-lg~------~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 16 LRAQRHDFLNHLQVIYGLLQ-LGK------YEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHH-CCC------HHHHHHHHHHHHHHHHHHH
Confidence 36667778888888888874 223 4678999999998877653
No 172
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.02 E-value=1.7e+02 Score=20.29 Aligned_cols=24 Identities=8% Similarity=-0.038 Sum_probs=21.0
Q ss_pred CCCChHHHHHHHHHcCCCeeEEEE
Q 029383 96 YRPELMSDLRQALDALPLKMLKAE 119 (194)
Q Consensus 96 dr~GlL~~I~~aL~~lgL~V~~A~ 119 (194)
...|.+.+++++|+.+|+.+-+.-
T Consensus 13 ~evGF~rk~L~I~E~~~is~Eh~P 36 (76)
T cd04911 13 REVGFGRKLLSILEDNGISYEHMP 36 (76)
T ss_pred chhcHHHHHHHHHHHcCCCEeeec
Confidence 567999999999999999888764
No 173
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=28.32 E-value=1.7e+02 Score=19.01 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=23.3
Q ss_pred CCChHHHHHHHHHcCCCeeEEEEEEecC
Q 029383 97 RPELMSDLRQALDALPLKMLKAEISTLG 124 (194)
Q Consensus 97 r~GlL~~I~~aL~~lgL~V~~A~Ist~g 124 (194)
.+|++.+++++|.+.|+++.-...++.+
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s~ 41 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSMRN 41 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecCCe
Confidence 6899999999999999999776655543
No 174
>PRK06545 prephenate dehydrogenase; Validated
Probab=27.92 E-value=1.2e+02 Score=26.68 Aligned_cols=47 Identities=11% Similarity=0.193 Sum_probs=35.2
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEE
Q 029383 87 LYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVF 133 (194)
Q Consensus 87 ~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v 133 (194)
+..+.+.-+|+||.+.+|+..|-+.|+.|.+..|.-.-+....++.+
T Consensus 290 ~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~ 336 (359)
T PRK06545 290 FYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQI 336 (359)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEE
Confidence 44456677899999999999999999999999885443333333333
No 175
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=27.07 E-value=2.8e+02 Score=26.07 Aligned_cols=42 Identities=17% Similarity=0.281 Sum_probs=32.6
Q ss_pred EEecCCCChHHHHHHHHHcCCCeeEEEEEEe--cCCEEEEEEEE
Q 029383 92 ICCEYRPELMSDLRQALDALPLKMLKAEIST--LGGRLKNVIVF 133 (194)
Q Consensus 92 i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist--~g~~~~~vf~v 133 (194)
+...|+||.+..|...|-+.++.|-..+++. .|+.+.-+|-+
T Consensus 457 ~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~ 500 (526)
T PRK13581 457 IRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV 500 (526)
T ss_pred EEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC
Confidence 4568999999999999999999998888775 44555544444
No 176
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.90 E-value=1.5e+02 Score=17.73 Aligned_cols=27 Identities=15% Similarity=0.118 Sum_probs=23.1
Q ss_pred cCCCChHHHHHHHHHcCCCeeEEEEEE
Q 029383 95 EYRPELMSDLRQALDALPLKMLKAEIS 121 (194)
Q Consensus 95 ~dr~GlL~~I~~aL~~lgL~V~~A~Is 121 (194)
++.+|.+.+++.+|.+.|+.+......
T Consensus 9 ~~~~~~~~~i~~~L~~~~i~i~~i~~~ 35 (61)
T cd04891 9 PDKPGVAAKIFSALAEAGINVDMIVQS 35 (61)
T ss_pred CCCCcHHHHHHHHHHHcCCcEEEEEEc
Confidence 577999999999999999999776543
No 177
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.90 E-value=2.1e+02 Score=19.24 Aligned_cols=26 Identities=4% Similarity=-0.028 Sum_probs=22.6
Q ss_pred ecCCCChHHHHHHHHHcCCCeeEEEE
Q 029383 94 CEYRPELMSDLRQALDALPLKMLKAE 119 (194)
Q Consensus 94 c~dr~GlL~~I~~aL~~lgL~V~~A~ 119 (194)
.++.+|++.+|+++|.+.|+.|....
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~ 36 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVS 36 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE
Confidence 34679999999999999999998774
No 178
>PF12344 UvrB: Ultra-violet resistance protein B; InterPro: IPR024759 This entry represents a domain found towards the C terminus of the ultraviolet resistance protein B (UvrB). UvrB conveys mutational resistance against UV light to various different species []. This domain is approximately 40 amino acids in length and contains two conserved sequence motifs: YAD and RRR.; PDB: 2D7D_A 2NMV_A 3UWX_B 1D2M_A 1C4O_A 2FDC_A 1D9Z_A 1T5L_B 1D9X_A.
Probab=25.51 E-value=1.1e+02 Score=19.23 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=17.9
Q ss_pred ccHHHHHHHHHHHHhHHHhhccCCCC
Q 029383 7 HSEAERRRRERINAHLDTLRGLVPPN 32 (194)
Q Consensus 7 h~~~Er~RR~~i~~~~~~Lr~lvP~~ 32 (194)
..+.|=.||.+++..|..-..++|..
T Consensus 12 ~ai~eT~rRR~~Q~~yN~~h~ItP~t 37 (44)
T PF12344_consen 12 KAIDETNRRREIQIAYNKEHGITPKT 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 34567888889999999999999954
No 179
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=25.32 E-value=2e+02 Score=18.82 Aligned_cols=29 Identities=10% Similarity=0.109 Sum_probs=23.7
Q ss_pred CCCChHHHHHHHHHcCCCeeEEEEEEecC
Q 029383 96 YRPELMSDLRQALDALPLKMLKAEISTLG 124 (194)
Q Consensus 96 dr~GlL~~I~~aL~~lgL~V~~A~Ist~g 124 (194)
+.+|++.+++++|.+.++.+.-...++.+
T Consensus 13 ~~~~~~~~i~~~L~~~~I~v~~i~~~~~~ 41 (80)
T cd04921 13 GVPGIAARIFSALARAGINVILISQASSE 41 (80)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEecCCc
Confidence 67899999999999999999766554333
No 180
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=25.04 E-value=3.3e+02 Score=21.09 Aligned_cols=54 Identities=19% Similarity=0.302 Sum_probs=37.0
Q ss_pred HHHHHHHcCCCeeEEEEEEecCC-EEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHh
Q 029383 103 DLRQALDALPLKMLKAEISTLGG-RLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 161 (194)
Q Consensus 103 ~I~~aL~~lgL~V~~A~Ist~g~-~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~ 161 (194)
-+-.++..+|+++....+...++ .+.-+|+ +..++. .-..+..+.+++..+|+.
T Consensus 12 ~~~~~~~~~g~~l~dv~~~~~~~~~~l~V~I---d~~~gv--~iddc~~~Sr~is~~LD~ 66 (154)
T PRK00092 12 LIEPVVEALGYELVDVEYVKEGRDSTLRIYI---DKEGGI--DLDDCEEVSRQISAVLDV 66 (154)
T ss_pred HHHHHHHHCCCEEEEEEEEecCCCcEEEEEE---ECCCCC--CHHHHHHHHHHHHHHhcc
Confidence 34566888999999999987654 3443333 222222 345678999999999985
No 181
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.65 E-value=1.7e+02 Score=17.79 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=21.1
Q ss_pred CCCChHHHHHHHHHcCCCeeEEEE
Q 029383 96 YRPELMSDLRQALDALPLKMLKAE 119 (194)
Q Consensus 96 dr~GlL~~I~~aL~~lgL~V~~A~ 119 (194)
+.+|.+.+++.+|.+.++.+....
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 12 SHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEE
Confidence 568999999999999999997665
No 182
>PLN02550 threonine dehydratase
Probab=24.16 E-value=4.2e+02 Score=25.60 Aligned_cols=36 Identities=3% Similarity=-0.024 Sum_probs=27.7
Q ss_pred ceeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEe
Q 029383 85 DFLYKASICCEYRPELMSDLRQALDALPLKMLKAEIST 122 (194)
Q Consensus 85 ~~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist 122 (194)
...+.+.+.-+|+||-|.++++.|-.. +|+..+...
T Consensus 415 ~r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~ 450 (591)
T PLN02550 415 QQEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRY 450 (591)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEe
Confidence 345677888999999999999999875 555555443
No 183
>PRK14640 hypothetical protein; Provisional
Probab=23.54 E-value=3.6e+02 Score=21.00 Aligned_cols=54 Identities=17% Similarity=0.202 Sum_probs=37.2
Q ss_pred HHHHHHHcCCCeeEEEEEEecCC-EEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHh
Q 029383 103 DLRQALDALPLKMLKAEISTLGG-RLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 161 (194)
Q Consensus 103 ~I~~aL~~lgL~V~~A~Ist~g~-~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~ 161 (194)
-+-..++++|+++....+...++ .+.-+|. +..++. .-..+..+.++|..+|+.
T Consensus 11 li~p~~~~~G~el~dve~~~~~~~~~lrV~I---D~~~gv--~lddC~~vSr~is~~LD~ 65 (152)
T PRK14640 11 LLEAPVVALGFELWGIEFIRAGKHSTLRVYI---DGENGV--SVENCAEVSHQVGAIMDV 65 (152)
T ss_pred HHHHHHHhcCCEEEEEEEEecCCCcEEEEEE---ECCCCC--CHHHHHHHHHHHHHHhcc
Confidence 34456788999999999987654 4444443 333332 345678999999999985
No 184
>PRK14636 hypothetical protein; Provisional
Probab=23.24 E-value=4e+02 Score=21.41 Aligned_cols=56 Identities=9% Similarity=0.077 Sum_probs=37.6
Q ss_pred HHHHHHHcCCCeeEEEEEEecC-CEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHh
Q 029383 103 DLRQALDALPLKMLKAEISTLG-GRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 161 (194)
Q Consensus 103 ~I~~aL~~lgL~V~~A~Ist~g-~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~ 161 (194)
-+-.++.++|+++....+...+ ..+.-+|+- ...+++. .-..+..+.++|..+|+.
T Consensus 10 lvep~~~~~GleLvdve~~~~~~~~~lrV~ID-~~~~ggV--~lDDC~~vSr~Is~~LD~ 66 (176)
T PRK14636 10 LIEPEAKALGLDLVRVAMFGGKSDPTLQIMAE-RPDTRQL--VIEDCAALSRRLSDVFDE 66 (176)
T ss_pred HHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEE-CCCCCCc--CHHHHHHHHHHHHHHhcc
Confidence 3445688999999999998765 445545442 2212222 345678999999999985
No 185
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=23.07 E-value=1.4e+02 Score=24.00 Aligned_cols=41 Identities=17% Similarity=0.133 Sum_probs=31.7
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEec---CCEE
Q 029383 87 LYKASICCEYRPELMSDLRQALDALPLKMLKAEISTL---GGRL 127 (194)
Q Consensus 87 ~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~---g~~~ 127 (194)
.+.+.+.-.|+||-|..+++-|-+.|..|++.-=+.. |+++
T Consensus 5 ritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~ 48 (170)
T COG2061 5 RITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRV 48 (170)
T ss_pred EEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCce
Confidence 4556777889999999999999999988776644433 5655
No 186
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=22.96 E-value=1.9e+02 Score=17.61 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=21.2
Q ss_pred CCCChHHHHHHHHHcCCCeeEEEE
Q 029383 96 YRPELMSDLRQALDALPLKMLKAE 119 (194)
Q Consensus 96 dr~GlL~~I~~aL~~lgL~V~~A~ 119 (194)
+.+|.+.+++.+|.+.|+.+.-..
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 12 SHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEE
Confidence 568999999999999999997665
No 187
>PRK10222 PTS system L-ascorbate-specific transporter subunit IIB; Provisional
Probab=22.83 E-value=89 Score=21.90 Aligned_cols=59 Identities=12% Similarity=0.155 Sum_probs=39.2
Q ss_pred HHHHHHHcCCC--eeEEEEEEecCCE--EEEEEEEeecCCCCh----------hhhhhhHHHHHHHHHHHHHh
Q 029383 103 DLRQALDALPL--KMLKAEISTLGGR--LKNVIVFTSCKEGNA----------EASQTLANDVQQALNSVLEK 161 (194)
Q Consensus 103 ~I~~aL~~lgL--~V~~A~Ist~g~~--~~~vf~v~~~~~~~~----------~~~~~~~~~l~~aL~~~l~~ 161 (194)
.|-+.|+++|+ +|.++.++...+. -.|.|++...-.... ..+-...+.|++.|..++.+
T Consensus 6 kIk~~L~e~Gi~~~ve~~diss~~~~~~~aDiiVtt~~l~~~~~~~g~~~l~gI~N~~d~~ei~~~~~~~~~~ 78 (85)
T PRK10222 6 KVDQFLTQSNIDHTVNSCAVGEYKSELSGADIIIASTHIAGEITVTGNKYVVGVRNMLSPADFGPKLLEVIKE 78 (85)
T ss_pred HHHHHHHHcCCCeEEEEeehhhcccCCCCCCEEEECccchhhhccCCCceEEEEecccCHHHHHHHHHHHHHH
Confidence 56678999999 8899999877776 557776654321110 11123457888888888776
No 188
>PRK00907 hypothetical protein; Provisional
Probab=22.42 E-value=3e+02 Score=19.75 Aligned_cols=64 Identities=23% Similarity=0.275 Sum_probs=37.6
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEE---ecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHH
Q 029383 88 YKASICCEYRPELMSDLRQALDALPLKMLKAEIS---TLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNS 157 (194)
Q Consensus 88 v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Is---t~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~ 157 (194)
.-++|-....+++...|.+.++.+.=+.....++ +.+|+..++-..... . .....+.|-++|.+
T Consensus 18 fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~a-t-----s~eQld~iY~~L~~ 84 (92)
T PRK00907 18 FELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRA-E-----SREQYDAAHQALRD 84 (92)
T ss_pred CeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEE-C-----CHHHHHHHHHHHhh
Confidence 4466888999999999999999875443333331 334444333222222 1 22345677777654
No 189
>PRK14634 hypothetical protein; Provisional
Probab=22.28 E-value=3.9e+02 Score=20.93 Aligned_cols=56 Identities=9% Similarity=-0.024 Sum_probs=37.0
Q ss_pred HHHHHHHcCCCeeEEEEEEecC-CEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHh
Q 029383 103 DLRQALDALPLKMLKAEISTLG-GRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 161 (194)
Q Consensus 103 ~I~~aL~~lgL~V~~A~Ist~g-~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~ 161 (194)
-+-..++++|+++....+...+ +.+.-+|.- ...+++. .-..+..+.++|..+|+.
T Consensus 12 l~~~~~~~~G~elvdve~~~~~~~~~lrV~ID-~~~g~~v--~lddC~~vSr~is~~LD~ 68 (155)
T PRK14634 12 LASATAADKGFELCGIQVLTHLQPMTLQVQIR-RSSGSDV--SLDDCAGFSGPMGEALEA 68 (155)
T ss_pred HHHHHHHHcCCEEEEEEEEeCCCCcEEEEEEE-CCCCCcc--cHHHHHHHHHHHHHHhcc
Confidence 3444577899999999998765 455544432 2222112 345678999999999985
No 190
>PRK08210 aspartate kinase I; Reviewed
Probab=22.17 E-value=5.6e+02 Score=22.88 Aligned_cols=29 Identities=28% Similarity=0.361 Sum_probs=23.7
Q ss_pred EEEEEec---CCCChHHHHHHHHHcCCCeeEE
Q 029383 89 KASICCE---YRPELMSDLRQALDALPLKMLK 117 (194)
Q Consensus 89 ~I~i~c~---dr~GlL~~I~~aL~~lgL~V~~ 117 (194)
+|.+... +.||.+.+++++|.+.|+.|..
T Consensus 341 ~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 341 KVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred EEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 3445554 6899999999999999999974
No 191
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=21.41 E-value=2.8e+02 Score=18.92 Aligned_cols=30 Identities=7% Similarity=0.138 Sum_probs=23.4
Q ss_pred CCChHHHHHHHHHcCCCeeEEEEEEecCCEEE
Q 029383 97 RPELMSDLRQALDALPLKMLKAEISTLGGRLK 128 (194)
Q Consensus 97 r~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~ 128 (194)
.+|.-.+|+++|..+++.++.- ++.-..+.
T Consensus 14 ~~g~d~~i~~~l~~~~v~ii~K--~~nANtit 43 (71)
T cd04910 14 EVGYDLEILELLQRFKVSIIAK--DTNANTIT 43 (71)
T ss_pred ChhHHHHHHHHHHHcCCeEEEE--ecCCCeEE
Confidence 4789999999999999999887 44444443
No 192
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=21.12 E-value=99 Score=28.59 Aligned_cols=74 Identities=11% Similarity=0.084 Sum_probs=48.5
Q ss_pred ceeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCE-EEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHhc
Q 029383 85 DFLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGR-LKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKA 162 (194)
Q Consensus 85 ~~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~-~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~~ 162 (194)
+..+++.+.-+++||-+.++.+.+..+++.+-+-.-...-.+ +..+|.+-.+.... +.-..+|++.+.++.+..
T Consensus 371 ~~~v~l~v~l~d~pG~~~~l~~~i~~~~~se~~~~~~~~~~~~v~t~~v~~~~e~~~----~~~~~ql~~~~~~~~d~s 445 (457)
T KOG1250|consen 371 NREVRLLVALPDRPGGFNKLTELIGPLSVSEKDIRHERAWMRNVYTSFVKVVRETEG----KEHEQQLKQKLKKAYDIS 445 (457)
T ss_pred CceEeeeeecccCCCcchhhHHhhcccccchhhhhhhHHHhhhheEEEEEEEEeccc----HHHHHHHHHhhhheecch
Confidence 466778888999999999999999998876654332221111 34555554444333 344577888888876543
No 193
>PRK06635 aspartate kinase; Reviewed
Probab=20.70 E-value=5.8e+02 Score=22.66 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=25.3
Q ss_pred EEEEEe---cCCCChHHHHHHHHHcCCCeeEEEE
Q 029383 89 KASICC---EYRPELMSDLRQALDALPLKMLKAE 119 (194)
Q Consensus 89 ~I~i~c---~dr~GlL~~I~~aL~~lgL~V~~A~ 119 (194)
.+.+.+ .+.||.+.+++++|.+.|+.|.-..
T Consensus 342 ~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ 375 (404)
T PRK06635 342 KVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS 375 (404)
T ss_pred EEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence 456654 4789999999999999999997753
No 194
>PRK06635 aspartate kinase; Reviewed
Probab=20.60 E-value=4.7e+02 Score=23.28 Aligned_cols=45 Identities=9% Similarity=0.093 Sum_probs=30.2
Q ss_pred EEEEEe-cCCCChHHHHHHHHHcCCCeeEEEEEEecCC-EEEEEEEE
Q 029383 89 KASICC-EYRPELMSDLRQALDALPLKMLKAEISTLGG-RLKNVIVF 133 (194)
Q Consensus 89 ~I~i~c-~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~-~~~~vf~v 133 (194)
.|.+.+ ..++|.+.+++++|.+.|+.|.....+...+ ...-.|.+
T Consensus 264 ~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v 310 (404)
T PRK06635 264 KVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTV 310 (404)
T ss_pred EEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEE
Confidence 344433 3689999999999999999999765443232 33334555
No 195
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=20.55 E-value=3.1e+02 Score=20.76 Aligned_cols=52 Identities=15% Similarity=0.047 Sum_probs=30.4
Q ss_pred hHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHH
Q 029383 100 LMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQAL 155 (194)
Q Consensus 100 lL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL 155 (194)
=+..++.+|++.|+.|+--+=-=+.+.- .+||+ +-.+.+. ....+..+++||
T Consensus 69 EV~pvi~aL~~~GI~vtAlHNH~l~e~P-rl~ym-H~~~~gd--p~~lA~~vr~Al 120 (123)
T PF07485_consen 69 EVNPVISALRKNGIEVTALHNHWLFEQP-RLFYM-HIWGVGD--PAKLARKVRAAL 120 (123)
T ss_pred HHHHHHHHHHHCCceEEEEecccccCCC-CEEEE-EEEecCC--HHHHHHHHHHHH
Confidence 3467999999999999877654444433 24455 3322221 234455555554
No 196
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=20.36 E-value=79 Score=21.96 Aligned_cols=30 Identities=7% Similarity=0.121 Sum_probs=25.4
Q ss_pred EEEEecC-CCChHHHHHHHHHcCCCeeEEEE
Q 029383 90 ASICCEY-RPELMSDLRQALDALPLKMLKAE 119 (194)
Q Consensus 90 I~i~c~d-r~GlL~~I~~aL~~lgL~V~~A~ 119 (194)
|.+...+ .+|.++.+...|.++|+.|.+.+
T Consensus 2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~ 32 (84)
T cd04871 2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIR 32 (84)
T ss_pred EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 4567788 89999999999999999886543
Done!