Query 029383
Match_columns 194
No_of_seqs 180 out of 1397
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 19:45:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029383.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029383hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 1.9E-16 6.6E-21 111.9 5.6 57 4-60 7-64 (82)
2 4h10_B Circadian locomoter out 99.6 2.5E-15 8.7E-20 103.2 6.6 56 4-59 9-65 (71)
3 1a0a_A BHLH, protein (phosphat 99.6 2.5E-16 8.5E-21 106.1 0.3 51 5-55 4-61 (63)
4 1an4_A Protein (upstream stimu 99.5 1.5E-15 5.3E-20 102.6 2.7 52 4-55 6-63 (65)
5 4ati_A MITF, microphthalmia-as 99.5 1.3E-14 4.5E-19 109.1 7.0 57 4-60 28-88 (118)
6 1nkp_B MAX protein, MYC proto- 99.5 1.6E-14 5.5E-19 102.1 6.5 56 5-60 4-61 (83)
7 4h10_A ARYL hydrocarbon recept 99.5 3.6E-15 1.2E-19 103.1 2.7 50 4-53 10-63 (73)
8 1hlo_A Protein (transcription 99.5 1.5E-14 5E-19 101.7 5.7 57 4-60 13-71 (80)
9 1nkp_A C-MYC, MYC proto-oncoge 99.5 2.7E-14 9.2E-19 102.2 6.2 56 4-59 7-65 (88)
10 1nlw_A MAD protein, MAX dimeri 99.4 2.5E-13 8.5E-18 95.5 6.8 56 5-60 3-61 (80)
11 3u5v_A Protein MAX, transcript 99.4 1.2E-13 4.2E-18 96.1 4.5 57 4-60 6-66 (76)
12 1mdy_A Protein (MYOD BHLH doma 99.2 1.7E-11 5.7E-16 83.5 4.3 51 5-55 14-66 (68)
13 2ql2_B Neurod1, neurogenic dif 99.1 6.6E-11 2.2E-15 78.7 5.6 52 5-56 4-58 (60)
14 4f3l_A Mclock, circadian locom 99.0 2.2E-10 7.4E-15 99.8 5.6 52 3-54 12-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.9 1.1E-09 3.7E-14 96.5 4.9 52 3-54 13-68 (387)
16 2lfh_A DNA-binding protein inh 98.7 2.6E-09 9E-14 72.2 1.5 45 9-53 20-67 (68)
17 4ath_A MITF, microphthalmia-as 98.6 8.4E-08 2.9E-12 67.2 5.4 44 15-58 4-51 (83)
18 4aya_A DNA-binding protein inh 98.2 2.7E-06 9.2E-11 61.3 6.0 49 11-59 33-84 (97)
19 1zpv_A ACT domain protein; str 97.7 0.00092 3.1E-08 46.1 11.7 69 86-161 4-72 (91)
20 2nyi_A Unknown protein; protei 97.7 0.00013 4.3E-09 58.3 8.0 75 85-163 91-167 (195)
21 1u8s_A Glycine cleavage system 97.6 0.00073 2.5E-08 53.3 10.9 67 87-161 6-72 (192)
22 1u8s_A Glycine cleavage system 97.5 0.00052 1.8E-08 54.2 8.9 76 85-163 91-170 (192)
23 2ko1_A CTR148A, GTP pyrophosph 97.4 0.0013 4.4E-08 44.8 9.4 48 86-133 4-51 (88)
24 2nyi_A Unknown protein; protei 97.4 0.001 3.5E-08 52.9 9.8 69 87-159 5-73 (195)
25 3p96_A Phosphoserine phosphata 95.4 0.12 4.1E-06 44.9 10.5 72 86-163 11-82 (415)
26 2f1f_A Acetolactate synthase i 95.2 0.088 3E-06 41.0 8.2 63 89-159 5-69 (164)
27 3o1l_A Formyltetrahydrofolate 95.2 0.18 6.2E-06 42.9 10.8 71 87-163 22-94 (302)
28 3n0v_A Formyltetrahydrofolate 95.1 0.22 7.7E-06 41.9 10.9 68 88-162 9-78 (286)
29 2jhe_A Transcription regulator 94.9 0.046 1.6E-06 41.3 5.9 36 89-124 2-37 (190)
30 3obi_A Formyltetrahydrofolate 94.9 0.2 6.8E-06 42.3 10.2 69 88-162 7-77 (288)
31 2pc6_A Probable acetolactate s 94.5 0.17 5.8E-06 39.4 8.1 64 88-159 5-70 (165)
32 3lou_A Formyltetrahydrofolate 94.3 0.28 9.5E-06 41.5 9.8 74 87-164 10-85 (292)
33 3nrb_A Formyltetrahydrofolate 93.9 0.23 7.9E-06 41.9 8.4 68 87-162 7-76 (287)
34 2fgc_A Acetolactate synthase, 92.9 0.44 1.5E-05 38.0 8.0 65 88-160 30-96 (193)
35 1y7p_A Hypothetical protein AF 92.3 0.4 1.4E-05 39.1 7.1 38 87-124 4-41 (223)
36 2qmx_A Prephenate dehydratase; 85.0 5.6 0.00019 33.3 9.3 65 87-158 200-265 (283)
37 2f06_A Conserved hypothetical 84.2 6 0.0002 28.8 8.3 42 90-131 75-116 (144)
38 3mwb_A Prephenate dehydratase; 82.8 9.4 0.00032 32.4 9.9 69 86-161 200-270 (313)
39 2f06_A Conserved hypothetical 78.4 7.8 0.00027 28.2 7.1 35 88-122 7-41 (144)
40 3luy_A Probable chorismate mut 78.1 19 0.00066 30.7 10.3 59 96-161 217-276 (329)
41 2qmw_A PDT, prephenate dehydra 77.3 10 0.00034 31.5 8.1 47 89-135 188-238 (267)
42 2re1_A Aspartokinase, alpha an 61.5 38 0.0013 25.3 7.8 39 87-127 103-144 (167)
43 2re1_A Aspartokinase, alpha an 60.3 43 0.0015 24.9 7.9 46 88-133 26-73 (167)
44 1phz_A Protein (phenylalanine 60.0 20 0.00069 31.8 6.7 50 87-137 34-84 (429)
45 2dtj_A Aspartokinase; protein- 59.7 37 0.0013 25.7 7.5 46 88-133 16-65 (178)
46 1sc6_A PGDH, D-3-phosphoglycer 58.6 43 0.0015 29.1 8.6 45 89-133 333-377 (404)
47 2dt9_A Aspartokinase; protein- 56.6 44 0.0015 24.8 7.4 46 88-133 17-66 (167)
48 1ygy_A PGDH, D-3-phosphoglycer 45.4 1.2E+02 0.0042 26.9 9.6 45 89-133 456-502 (529)
49 2dtj_A Aspartokinase; protein- 38.8 1E+02 0.0035 23.1 7.0 31 88-118 96-129 (178)
50 4go7_X Aspartokinase; transfer 37.1 1.2E+02 0.0043 23.5 7.4 46 88-133 36-85 (200)
51 3ab4_A Aspartokinase; aspartat 36.1 1.9E+02 0.0064 24.9 9.0 47 87-133 264-314 (421)
52 1p3q_Q VPS9P, vacuolar protein 33.4 26 0.00089 22.0 2.2 25 9-33 3-27 (54)
53 2dt9_A Aspartokinase; protein- 32.8 1.5E+02 0.005 21.8 7.1 31 88-118 96-129 (167)
54 2wt7_A Proto-oncogene protein 28.7 1.1E+02 0.0038 19.2 4.8 17 11-27 1-17 (63)
55 3mtj_A Homoserine dehydrogenas 28.5 52 0.0018 29.0 4.2 32 88-119 360-391 (444)
56 3s1t_A Aspartokinase; ACT doma 27.0 2E+02 0.0069 21.6 7.6 40 94-133 24-66 (181)
57 1pd7_B MAD1; PAH2, SIN3, eukar 26.1 81 0.0028 16.7 3.2 20 35-54 2-21 (26)
58 1xkm_B Distinctin chain B; por 24.5 82 0.0028 16.2 3.1 20 38-57 3-22 (26)
59 2jqq_A Conserved oligomeric go 21.1 58 0.002 25.8 2.6 45 15-60 53-97 (204)
60 3muj_A Transcription factor CO 20.7 1.3E+02 0.0044 22.4 4.4 34 18-51 96-133 (138)
61 3ab4_A Aspartokinase; aspartat 20.5 3.2E+02 0.011 23.3 7.7 37 89-127 346-385 (421)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.64 E-value=1.9e-16 Score=111.91 Aligned_cols=57 Identities=25% Similarity=0.384 Sum_probs=53.5
Q ss_pred cccccHHHHHHHHHHHHhHHHhhccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHhc
Q 029383 4 LKNHSEAERRRRERINAHLDTLRGLVPPN-GKMDKATLLAEVIRQVKELKTNAIEASK 60 (194)
Q Consensus 4 ~~~h~~~Er~RR~~i~~~~~~Lr~lvP~~-~k~dk~sil~~ai~yi~~L~~~~~~l~~ 60 (194)
..+|+.+||+||++||+.|.+|+++||+. .|+||++||.+||+||++|+.+++.|..
T Consensus 7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~ 64 (82)
T 1am9_A 7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQ 64 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999986 8999999999999999999999998765
No 2
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.58 E-value=2.5e-15 Score=103.16 Aligned_cols=56 Identities=25% Similarity=0.399 Sum_probs=50.7
Q ss_pred cccccHHHHHHHHHHHHhHHHhhccCCC-CCCCChhhHHHHHHHHHHHHHHHHHHHh
Q 029383 4 LKNHSEAERRRRERINAHLDTLRGLVPP-NGKMDKATLLAEVIRQVKELKTNAIEAS 59 (194)
Q Consensus 4 ~~~h~~~Er~RR~~i~~~~~~Lr~lvP~-~~k~dk~sil~~ai~yi~~L~~~~~~l~ 59 (194)
..+|+.+||+||++||+.|.+|++|||. ..|+||++||.+||+||+.||+++.=|+
T Consensus 9 R~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 9 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3579999999999999999999999996 4699999999999999999999876443
No 3
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.57 E-value=2.5e-16 Score=106.09 Aligned_cols=51 Identities=31% Similarity=0.531 Sum_probs=46.8
Q ss_pred ccccHHHHHHHHHHHHhHHHhhccCCCC-------CCCChhhHHHHHHHHHHHHHHHH
Q 029383 5 KNHSEAERRRRERINAHLDTLRGLVPPN-------GKMDKATLLAEVIRQVKELKTNA 55 (194)
Q Consensus 5 ~~h~~~Er~RR~~i~~~~~~Lr~lvP~~-------~k~dk~sil~~ai~yi~~L~~~~ 55 (194)
.+|+.+||+||++||..|..|++|||+. .+.+|++||+.||+||++||+++
T Consensus 4 ~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 4 ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp TGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999943 56779999999999999999865
No 4
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.54 E-value=1.5e-15 Score=102.61 Aligned_cols=52 Identities=29% Similarity=0.525 Sum_probs=47.8
Q ss_pred cccccHHHHHHHHHHHHhHHHhhccCCCCC------CCChhhHHHHHHHHHHHHHHHH
Q 029383 4 LKNHSEAERRRRERINAHLDTLRGLVPPNG------KMDKATLLAEVIRQVKELKTNA 55 (194)
Q Consensus 4 ~~~h~~~Er~RR~~i~~~~~~Lr~lvP~~~------k~dk~sil~~ai~yi~~L~~~~ 55 (194)
..+|+.+||+||++||+.|.+|+++||... |++|++||.+||+||++||++.
T Consensus 6 r~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999999754 7899999999999999999764
No 5
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.53 E-value=1.3e-14 Score=109.10 Aligned_cols=57 Identities=30% Similarity=0.469 Sum_probs=50.6
Q ss_pred cccccHHHHHHHHHHHHhHHHhhccCCCC----CCCChhhHHHHHHHHHHHHHHHHHHHhc
Q 029383 4 LKNHSEAERRRRERINAHLDTLRGLVPPN----GKMDKATLLAEVIRQVKELKTNAIEASK 60 (194)
Q Consensus 4 ~~~h~~~Er~RR~~i~~~~~~Lr~lvP~~----~k~dk~sil~~ai~yi~~L~~~~~~l~~ 60 (194)
..+|+.+||+||++||++|.+|+++||+. .|++|++||.+||+||++||++++.|..
T Consensus 28 r~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~ 88 (118)
T 4ati_A 28 KDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD 88 (118)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999975 3678999999999999999999998865
No 6
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.52 E-value=1.6e-14 Score=102.07 Aligned_cols=56 Identities=23% Similarity=0.456 Sum_probs=51.6
Q ss_pred ccccHHHHHHHHHHHHhHHHhhccCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHhc
Q 029383 5 KNHSEAERRRRERINAHLDTLRGLVPP--NGKMDKATLLAEVIRQVKELKTNAIEASK 60 (194)
Q Consensus 5 ~~h~~~Er~RR~~i~~~~~~Lr~lvP~--~~k~dk~sil~~ai~yi~~L~~~~~~l~~ 60 (194)
.+|+..||+||..||+.|..|+++||. ..|++|++||.+||+||+.|++++++|+.
T Consensus 4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~ 61 (83)
T 1nkp_B 4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999996 48999999999999999999988877653
No 7
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.51 E-value=3.6e-15 Score=103.10 Aligned_cols=50 Identities=38% Similarity=0.660 Sum_probs=46.6
Q ss_pred cccccHHHHHHHHHHHHhHHHhhccCCCC----CCCChhhHHHHHHHHHHHHHH
Q 029383 4 LKNHSEAERRRRERINAHLDTLRGLVPPN----GKMDKATLLAEVIRQVKELKT 53 (194)
Q Consensus 4 ~~~h~~~Er~RR~~i~~~~~~Lr~lvP~~----~k~dk~sil~~ai~yi~~L~~ 53 (194)
..+|+.+||+||++||+.|.+|++|||.. .|+||++||+.||+||+.|+.
T Consensus 10 R~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 10 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 46899999999999999999999999954 799999999999999999975
No 8
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.51 E-value=1.5e-14 Score=101.66 Aligned_cols=57 Identities=23% Similarity=0.415 Sum_probs=52.8
Q ss_pred cccccHHHHHHHHHHHHhHHHhhccCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHhc
Q 029383 4 LKNHSEAERRRRERINAHLDTLRGLVPPN--GKMDKATLLAEVIRQVKELKTNAIEASK 60 (194)
Q Consensus 4 ~~~h~~~Er~RR~~i~~~~~~Lr~lvP~~--~k~dk~sil~~ai~yi~~L~~~~~~l~~ 60 (194)
..+|+..||+||..||..|..|+++||.. .|++|++||..||+||+.|++++++|+.
T Consensus 13 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~ 71 (80)
T 1hlo_A 13 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999964 6899999999999999999999998864
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.50 E-value=2.7e-14 Score=102.15 Aligned_cols=56 Identities=20% Similarity=0.311 Sum_probs=50.9
Q ss_pred cccccHHHHHHHHHHHHhHHHhhccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHh
Q 029383 4 LKNHSEAERRRRERINAHLDTLRGLVPPN---GKMDKATLLAEVIRQVKELKTNAIEAS 59 (194)
Q Consensus 4 ~~~h~~~Er~RR~~i~~~~~~Lr~lvP~~---~k~dk~sil~~ai~yi~~L~~~~~~l~ 59 (194)
..+|+..||+||..||+.|..|+.+||.. .|++|++||.+||+||++|+.+.+.+.
T Consensus 7 R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~ 65 (88)
T 1nkp_A 7 RRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLI 65 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999964 699999999999999999999876543
No 10
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.43 E-value=2.5e-13 Score=95.47 Aligned_cols=56 Identities=29% Similarity=0.507 Sum_probs=50.8
Q ss_pred ccccHHHHHHHHHHHHhHHHhhccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHhc
Q 029383 5 KNHSEAERRRRERINAHLDTLRGLVPPN---GKMDKATLLAEVIRQVKELKTNAIEASK 60 (194)
Q Consensus 5 ~~h~~~Er~RR~~i~~~~~~Lr~lvP~~---~k~dk~sil~~ai~yi~~L~~~~~~l~~ 60 (194)
..|+..||+||..||++|..|+++||.. .|.+|++||.+|++||+.|+++.+++..
T Consensus 3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~ 61 (80)
T 1nlw_A 3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVH 61 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999954 6888999999999999999998876643
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.41 E-value=1.2e-13 Score=96.10 Aligned_cols=57 Identities=23% Similarity=0.334 Sum_probs=49.4
Q ss_pred cccccHHHHHHHHHHHHhHHHhhccCCC---CCCC-ChhhHHHHHHHHHHHHHHHHHHHhc
Q 029383 4 LKNHSEAERRRRERINAHLDTLRGLVPP---NGKM-DKATLLAEVIRQVKELKTNAIEASK 60 (194)
Q Consensus 4 ~~~h~~~Er~RR~~i~~~~~~Lr~lvP~---~~k~-dk~sil~~ai~yi~~L~~~~~~l~~ 60 (194)
..+|+..||+||..||+.|.+|+.+||. ..|. .|.+||..||+||+.||+++++++.
T Consensus 6 R~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 6 RAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4679999999999999999999999994 3455 6889999999999999999998765
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.18 E-value=1.7e-11 Score=83.53 Aligned_cols=51 Identities=27% Similarity=0.442 Sum_probs=46.8
Q ss_pred ccccHHHHHHHHHHHHhHHHhhccCCC--CCCCChhhHHHHHHHHHHHHHHHH
Q 029383 5 KNHSEAERRRRERINAHLDTLRGLVPP--NGKMDKATLLAEVIRQVKELKTNA 55 (194)
Q Consensus 5 ~~h~~~Er~RR~~i~~~~~~Lr~lvP~--~~k~dk~sil~~ai~yi~~L~~~~ 55 (194)
..|+..||+|+..||+.|..||.+||. ..|.+|..||..||+||..|++.+
T Consensus 14 ~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999995 478899999999999999999754
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.14 E-value=6.6e-11 Score=78.67 Aligned_cols=52 Identities=29% Similarity=0.284 Sum_probs=47.1
Q ss_pred ccccHHHHHHHHHHHHhHHHhhccCCCC---CCCChhhHHHHHHHHHHHHHHHHH
Q 029383 5 KNHSEAERRRRERINAHLDTLRGLVPPN---GKMDKATLLAEVIRQVKELKTNAI 56 (194)
Q Consensus 5 ~~h~~~Er~RR~~i~~~~~~Lr~lvP~~---~k~dk~sil~~ai~yi~~L~~~~~ 56 (194)
..|+..||+|+..||+.|..||.+||.. .|.+|..+|..||+||..|++.++
T Consensus 4 ~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 4 MKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 4588999999999999999999999964 688999999999999999998653
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.02 E-value=2.2e-10 Score=99.84 Aligned_cols=52 Identities=27% Similarity=0.487 Sum_probs=42.9
Q ss_pred ccccccHHHHHHHHHHHHhHHHhhccCC-CCCCCChhhHHHHHHHHHHHHHHH
Q 029383 3 ALKNHSEAERRRRERINAHLDTLRGLVP-PNGKMDKATLLAEVIRQVKELKTN 54 (194)
Q Consensus 3 ~~~~h~~~Er~RR~~i~~~~~~Lr~lvP-~~~k~dk~sil~~ai~yi~~L~~~ 54 (194)
...+|+.+||+||++||..|.+|++||| +..|+||++||..||.||+.|+..
T Consensus 12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 12 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 3578999999999999999999999999 668999999999999999999864
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.88 E-value=1.1e-09 Score=96.45 Aligned_cols=52 Identities=38% Similarity=0.650 Sum_probs=48.1
Q ss_pred ccccccHHHHHHHHHHHHhHHHhhccCC----CCCCCChhhHHHHHHHHHHHHHHH
Q 029383 3 ALKNHSEAERRRRERINAHLDTLRGLVP----PNGKMDKATLLAEVIRQVKELKTN 54 (194)
Q Consensus 3 ~~~~h~~~Er~RR~~i~~~~~~Lr~lvP----~~~k~dk~sil~~ai~yi~~L~~~ 54 (194)
...+|+.+||+||++||..|.+|++||| ...|+||++||..||.|||.|+..
T Consensus 13 ~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 13 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 3568999999999999999999999999 678999999999999999999853
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.72 E-value=2.6e-09 Score=72.17 Aligned_cols=45 Identities=24% Similarity=0.365 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhHHHhhccCCCC---CCCChhhHHHHHHHHHHHHHH
Q 029383 9 EAERRRRERINAHLDTLRGLVPPN---GKMDKATLLAEVIRQVKELKT 53 (194)
Q Consensus 9 ~~Er~RR~~i~~~~~~Lr~lvP~~---~k~dk~sil~~ai~yi~~L~~ 53 (194)
+.||+|+..||+.|..||.+||.. .|.+|..+|.-||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 568999999999999999999954 788999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.56 E-value=8.4e-08 Score=67.23 Aligned_cols=44 Identities=25% Similarity=0.428 Sum_probs=39.3
Q ss_pred HHHHHHhHHHhhccCCCC----CCCChhhHHHHHHHHHHHHHHHHHHH
Q 029383 15 RERINAHLDTLRGLVPPN----GKMDKATLLAEVIRQVKELKTNAIEA 58 (194)
Q Consensus 15 R~~i~~~~~~Lr~lvP~~----~k~dk~sil~~ai~yi~~L~~~~~~l 58 (194)
|..||+++.+|..|||.. .+.+|.+||..||+||++||++.+.+
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~ 51 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRA 51 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999964 57899999999999999999876654
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.19 E-value=2.7e-06 Score=61.29 Aligned_cols=49 Identities=24% Similarity=0.279 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhHHHhhccCCC---CCCCChhhHHHHHHHHHHHHHHHHHHHh
Q 029383 11 ERRRRERINAHLDTLRGLVPP---NGKMDKATLLAEVIRQVKELKTNAIEAS 59 (194)
Q Consensus 11 Er~RR~~i~~~~~~Lr~lvP~---~~k~dk~sil~~ai~yi~~L~~~~~~l~ 59 (194)
||.|-..+|+.|..||..||. ..|..|..+|.-||+||..|++-+++-.
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~ 84 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHL 84 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 678888999999999999995 4688999999999999999999887643
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.70 E-value=0.00092 Score=46.12 Aligned_cols=69 Identities=7% Similarity=0.072 Sum_probs=52.4
Q ss_pred eeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHh
Q 029383 86 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 161 (194)
Q Consensus 86 ~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~ 161 (194)
..+.+.+.|+|+||++.+|..+|.+.|..|.+.+..+.++.+.-.+.+.... . ...+.|.++|.++-..
T Consensus 4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~-~------~~l~~l~~~L~~~~~~ 72 (91)
T 1zpv_A 4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDE-K------QDFTYLRNEFEAFGQT 72 (91)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS-C------CCHHHHHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCC-C------CCHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999988877665555553221 1 2346777887776543
No 20
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=97.68 E-value=0.00013 Score=58.29 Aligned_cols=75 Identities=15% Similarity=0.020 Sum_probs=57.1
Q ss_pred ceeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecC--CEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHhc
Q 029383 85 DFLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLG--GRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKA 162 (194)
Q Consensus 85 ~~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g--~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~~ 162 (194)
...+.|++.|+||||+++.|...|.++|+.|..++..|.+ ++..+.|++...... . .... +.|+++|..+....
T Consensus 91 ~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~-~--~~~~-~~l~~~l~~~a~~l 166 (195)
T 2nyi_A 91 TREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAF-P--FPLY-QEVVTALSRVEEEF 166 (195)
T ss_dssp EEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEE-E--GGGH-HHHHHHHHHHHHHH
T ss_pred CcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEc-C--CCcc-HHHHHHHHHHHHHc
Confidence 3557789999999999999999999999999999999987 444566766443221 1 2234 78899988877664
Q ss_pred C
Q 029383 163 S 163 (194)
Q Consensus 163 ~ 163 (194)
+
T Consensus 167 ~ 167 (195)
T 2nyi_A 167 G 167 (195)
T ss_dssp T
T ss_pred C
Confidence 3
No 21
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=97.57 E-value=0.00073 Score=53.31 Aligned_cols=67 Identities=9% Similarity=0.201 Sum_probs=53.8
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHh
Q 029383 87 LYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 161 (194)
Q Consensus 87 ~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~ 161 (194)
...|.+.|+||||++++|..+|...|+.|..+++.+.+|.+.-.|.+... . ...+.|+++|..+...
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~-------~-~~~~~l~~~L~~~~~~ 72 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS-------P-SNITRVETTLPLLGQQ 72 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC-------H-HHHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC-------C-CCHHHHHHHHHHHHHh
Confidence 35688999999999999999999999999999999888877656666321 1 2457888888877654
No 22
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=97.47 E-value=0.00052 Score=54.17 Aligned_cols=76 Identities=9% Similarity=0.086 Sum_probs=55.6
Q ss_pred ceeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCC----EEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHH
Q 029383 85 DFLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGG----RLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLE 160 (194)
Q Consensus 85 ~~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~----~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~ 160 (194)
....+|.+.|+|+||++.+|.+.|.+.|+.|..+...|.+. +..+.|++....... .....+.|+++|..+..
T Consensus 91 ~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~---~~~~~~~l~~~l~~~~~ 167 (192)
T 1u8s_A 91 AYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD---SGCNLMQLQEEFDALCT 167 (192)
T ss_dssp SEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC---TTSCHHHHHHHHHHHHH
T ss_pred CceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC---CCCCHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999998873 455677664432211 12345788999888766
Q ss_pred hcC
Q 029383 161 KAS 163 (194)
Q Consensus 161 ~~~ 163 (194)
..+
T Consensus 168 ~~~ 170 (192)
T 1u8s_A 168 ALD 170 (192)
T ss_dssp HHT
T ss_pred HhC
Confidence 543
No 23
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=97.43 E-value=0.0013 Score=44.76 Aligned_cols=48 Identities=10% Similarity=0.194 Sum_probs=40.4
Q ss_pred eeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEE
Q 029383 86 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVF 133 (194)
Q Consensus 86 ~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v 133 (194)
+.+.+.+.+.|+||+|.+|..+|.+.|+.|.+.++.+.++.+..+|.+
T Consensus 4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v 51 (88)
T 2ko1_A 4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMI 51 (88)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEE
T ss_pred EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEE
Confidence 556788999999999999999999999999999998877744444444
No 24
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=97.40 E-value=0.001 Score=52.93 Aligned_cols=69 Identities=14% Similarity=0.294 Sum_probs=50.6
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHH
Q 029383 87 LYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVL 159 (194)
Q Consensus 87 ~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l 159 (194)
.+.|.|.|+||||+++.|..+|..+|+.|+.+++.+.+|.+.-.|.+... ... .....+.|+++|..+.
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~-~~~---~~~~~~~l~~~L~~~~ 73 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLN-AKD---GKLIQSALESALPGFQ 73 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES-SSS---SHHHHHHHHHHSTTCE
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEec-Ccc---chhHHHHHHHHHHHHH
Confidence 46688999999999999999999999999999999877766446666432 111 1123456666665544
No 25
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=95.36 E-value=0.12 Score=44.85 Aligned_cols=72 Identities=11% Similarity=0.143 Sum_probs=52.4
Q ss_pred eeEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHhcC
Q 029383 86 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKAS 163 (194)
Q Consensus 86 ~~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~~~ 163 (194)
..+.|.+.|+||||+...|...|.++|..|..++-++.+|++.-...+... . .....+.|+++|..+-...+
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~---~---~~~~~~~l~~~l~~~~~~~~ 82 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCP---A---DVADGPALRHDVEAAIRKVG 82 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEEC---H---HHHTSHHHHHHHHHHHHHTT
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEec---C---CcCCHHHHHHHHHHHHHHcC
Confidence 346789999999999999999999999999999999988876433333111 1 11123678888877655433
No 26
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=95.21 E-value=0.088 Score=40.99 Aligned_cols=63 Identities=8% Similarity=0.086 Sum_probs=47.5
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecC--CEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHH
Q 029383 89 KASICCEYRPELMSDLRQALDALPLKMLKAEISTLG--GRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVL 159 (194)
Q Consensus 89 ~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g--~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l 159 (194)
.+++..+++||+|.+|+..|...|+.|.+..+.+.. +...-+|.+. . +....+.|..+|.++.
T Consensus 5 ~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~-~-------d~~~leqI~kqL~Kl~ 69 (164)
T 2f1f_A 5 ILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-G-------DEKVLEQIEKQLHKLV 69 (164)
T ss_dssp EEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-S-------CHHHHHHHHHHHHHST
T ss_pred EEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe-c-------cHHHHHHHHHHHcCCC
Confidence 467889999999999999999999999999987543 5555555663 1 1234577788877754
No 27
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=95.16 E-value=0.18 Score=42.87 Aligned_cols=71 Identities=13% Similarity=0.115 Sum_probs=49.3
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEec--CCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHhcC
Q 029383 87 LYKASICCEYRPELMSDLRQALDALPLKMLKAEISTL--GGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKAS 163 (194)
Q Consensus 87 ~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~--g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~~~ 163 (194)
...+.+.|+||||+...|...|.++|..|..++-.+. +|++.- .+...... .....+.|+++|..+-....
T Consensus 22 ~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfM--r~~~~~~~----~~~~~~~L~~~l~~la~~l~ 94 (302)
T 3o1l_A 22 TFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFM--RHEIRADT----LPFDLDGFREAFTPIAEEFS 94 (302)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEE--EEEEEGGG----SSSCHHHHHHHHHHHHHHHT
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEE--EEEEecCC----CCCCHHHHHHHHHHHHHHhC
Confidence 4568999999999999999999999999999988764 454321 22111111 01235788888877655443
No 28
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=95.05 E-value=0.22 Score=41.92 Aligned_cols=68 Identities=9% Similarity=-0.047 Sum_probs=47.7
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEe--cCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHhc
Q 029383 88 YKASICCEYRPELMSDLRQALDALPLKMLKAEIST--LGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKA 162 (194)
Q Consensus 88 v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist--~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~~ 162 (194)
..+.+.|+||||+...|...|.++|..|...+-.+ .+|++.- .+....... ...+.|+++|..+-...
T Consensus 9 ~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffm--r~~~~~~~~-----~~~~~L~~~f~~la~~l 78 (286)
T 3n0v_A 9 WILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFI--RVEFRQPDD-----FDEAGFRAGLAERSEAF 78 (286)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEE--EEEEECCSS-----CCHHHHHHHHHHHHGGG
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEE--EEEEecCCC-----CCHHHHHHHHHHHHHHc
Confidence 56889999999999999999999999999998873 4454321 221221111 23578888887765443
No 29
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=94.94 E-value=0.046 Score=41.26 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=33.3
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecC
Q 029383 89 KASICCEYRPELMSDLRQALDALPLKMLKAEISTLG 124 (194)
Q Consensus 89 ~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g 124 (194)
.|+|.|.||+|++.+|+.+|.+.++.+..+++.+.|
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g 37 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG 37 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTT
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCC
Confidence 578999999999999999999999999999998763
No 30
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=94.91 E-value=0.2 Score=42.27 Aligned_cols=69 Identities=17% Similarity=0.232 Sum_probs=47.6
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEE--ecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHhc
Q 029383 88 YKASICCEYRPELMSDLRQALDALPLKMLKAEIS--TLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKA 162 (194)
Q Consensus 88 v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Is--t~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~~ 162 (194)
..+.+.|+||||+...|...|.++|..|...+-. ..+|++.-.+.+... .. ....+.|+++|..+-...
T Consensus 7 ~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~-~~-----~~~~~~L~~~f~~la~~~ 77 (288)
T 3obi_A 7 YVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAA-AK-----VIPLASLRTGFGVIAAKF 77 (288)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEES-SC-----CCCHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcC-CC-----CCCHHHHHHHHHHHHHHc
Confidence 5688999999999999999999999999999875 334544222222111 11 123578888887765543
No 31
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=94.46 E-value=0.17 Score=39.42 Aligned_cols=64 Identities=11% Similarity=0.129 Sum_probs=48.2
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecC--CEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHH
Q 029383 88 YKASICCEYRPELMSDLRQALDALPLKMLKAEISTLG--GRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVL 159 (194)
Q Consensus 88 v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g--~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l 159 (194)
-.+++..+++||.|.+|+..|...|+.|.+..+.+.. +...-+|.+..+ ....+.|..+|.+++
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d--------~~~leql~kQL~Kl~ 70 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGP--------DEIVEQITKQLNKLI 70 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEEC--------HHHHHHHHHHHHHST
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEecc--------HHHHHHHHHHhcCCC
Confidence 4577889999999999999999999999999887443 555555666321 234577888887764
No 32
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=94.35 E-value=0.28 Score=41.47 Aligned_cols=74 Identities=9% Similarity=0.136 Sum_probs=48.6
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEe--cCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHhcCC
Q 029383 87 LYKASICCEYRPELMSDLRQALDALPLKMLKAEIST--LGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKASP 164 (194)
Q Consensus 87 ~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist--~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~~~~ 164 (194)
...+.+.|+||||+...|...|.++|..|...+-.+ .+|++. +.+.....-.. .....+.|+++|..+-...+.
T Consensus 10 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ff--mr~~~~~~~~~--~~~~~~~L~~~f~~la~~~~m 85 (292)
T 3lou_A 10 QFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFF--VRCVFHATDDA--DALRVDALRREFEPIAERFRM 85 (292)
T ss_dssp EEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEE--EEEEEEECC------CCHHHHHHHHHHHHHHHTC
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceE--EEEEEEccCcc--cCCCHHHHHHHHHHHHHhcCc
Confidence 356889999999999999999999999999998873 445432 12211111000 012357888888776554433
No 33
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=93.89 E-value=0.23 Score=41.87 Aligned_cols=68 Identities=21% Similarity=0.226 Sum_probs=45.7
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEE--ecCCEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHhc
Q 029383 87 LYKASICCEYRPELMSDLRQALDALPLKMLKAEIS--TLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKA 162 (194)
Q Consensus 87 ~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Is--t~g~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~~ 162 (194)
...+.+.|+||||+...|...|.++|..|...+-. ..+|++. +.+.-.... .....|+++|..+-...
T Consensus 7 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ff--mr~~~~~~~------~~~~~L~~~f~~la~~~ 76 (287)
T 3nrb_A 7 QYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFF--MRVSVEIPV------AGVNDFNSAFGKVVEKY 76 (287)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEE--EEEEEECCC---------CHHHHHHHHHHGGG
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEE--EEEEEEcCC------CCHHHHHHHHHHHHHHc
Confidence 35688999999999999999999999999999875 3345432 122112111 11247788877665443
No 34
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=92.88 E-value=0.44 Score=38.02 Aligned_cols=65 Identities=11% Similarity=0.183 Sum_probs=48.0
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEE-ecC-CEEEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHH
Q 029383 88 YKASICCEYRPELMSDLRQALDALPLKMLKAEIS-TLG-GRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLE 160 (194)
Q Consensus 88 v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Is-t~g-~~~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~ 160 (194)
-.+.+..+++||.|.+|+..|...|+.|.+-.+. |.+ +...-+|.|..+ ....+.|..+|.++++
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~--------e~~ieqL~kQL~KLid 96 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD--------DKTIEQIEKQAYKLVE 96 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC--------TTHHHHHHHHHTTSTT
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC--------HHHHHHHHHHhcCcCc
Confidence 4578889999999999999999999999998886 434 445545556322 1245778888877543
No 35
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=92.28 E-value=0.4 Score=39.12 Aligned_cols=38 Identities=16% Similarity=0.092 Sum_probs=30.7
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecC
Q 029383 87 LYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLG 124 (194)
Q Consensus 87 ~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g 124 (194)
.+.+.+.+.||||+|.+|+++|.+.+..|.+.+..+..
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~ 41 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIK 41 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECC
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccc
Confidence 46788999999999999999999999999999998864
No 36
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=85.02 E-value=5.6 Score=33.29 Aligned_cols=65 Identities=8% Similarity=0.034 Sum_probs=46.2
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCE-EEEEEEEeecCCCChhhhhhhHHHHHHHHHHH
Q 029383 87 LYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGR-LKNVIVFTSCKEGNAEASQTLANDVQQALNSV 158 (194)
Q Consensus 87 ~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~-~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~ 158 (194)
.+-+-+..+++||.|++++..|...|+.+.+-+.=...+. ....|++ +..+... + ..++++|..+
T Consensus 200 ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffv-D~eg~~~--d----~~v~~aL~~L 265 (283)
T 2qmx_A 200 KTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYA-DFIGHRE--D----QNVHNALENL 265 (283)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEE-EEESCTT--S----HHHHHHHHHH
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEE-EEecCCC--c----HHHHHHHHHH
Confidence 3444455679999999999999999999999998766554 4788898 4433221 1 3556666654
No 37
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=84.19 E-value=6 Score=28.83 Aligned_cols=42 Identities=17% Similarity=0.084 Sum_probs=30.7
Q ss_pred EEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEE
Q 029383 90 ASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVI 131 (194)
Q Consensus 90 I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf 131 (194)
+-+.-+|+||.+.+++++|.+.|+.|.....+..+++..-+|
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i 116 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVI 116 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEE
Confidence 445677999999999999999999997655442345444333
No 38
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=82.85 E-value=9.4 Score=32.41 Aligned_cols=69 Identities=9% Similarity=0.057 Sum_probs=47.0
Q ss_pred eeEEEEEEec-CCCChHHHHHHHHHcCCCeeEEEEEEecCCE-EEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHh
Q 029383 86 FLYKASICCE-YRPELMSDLRQALDALPLKMLKAEISTLGGR-LKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 161 (194)
Q Consensus 86 ~~v~I~i~c~-dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~-~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~ 161 (194)
..+-|-+..+ ++||.|++++..|...|+...+-+.-...+. ....|++ +..+... + ..++++|..+-..
T Consensus 200 ~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffi-D~eg~~~--d----~~v~~aL~~L~~~ 270 (313)
T 3mwb_A 200 DKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSI-DADGHAT--D----SRVADALAGLHRI 270 (313)
T ss_dssp EEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEE-EEESCTT--S----HHHHHHHHHHHHH
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEE-EEeCCCC--c----HHHHHHHHHHHHh
Confidence 3445556665 8999999999999999999999988655443 3688898 3332211 1 3456666665433
No 39
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=78.40 E-value=7.8 Score=28.17 Aligned_cols=35 Identities=14% Similarity=0.184 Sum_probs=29.9
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEe
Q 029383 88 YKASICCEYRPELMSDLRQALDALPLKMLKAEIST 122 (194)
Q Consensus 88 v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist 122 (194)
-.+.+..+++||.+.+|...|.+.|+.|....+..
T Consensus 7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~ 41 (144)
T 2f06_A 7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAE 41 (144)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEe
Confidence 45677889999999999999999999998776653
No 40
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=78.06 E-value=19 Score=30.67 Aligned_cols=59 Identities=15% Similarity=0.200 Sum_probs=43.0
Q ss_pred CCCChHHHHHHHHHcCCCeeEEEEEEecCCE-EEEEEEEeecCCCChhhhhhhHHHHHHHHHHHHHh
Q 029383 96 YRPELMSDLRQALDALPLKMLKAEISTLGGR-LKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 161 (194)
Q Consensus 96 dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~-~~~vf~v~~~~~~~~~~~~~~~~~l~~aL~~~l~~ 161 (194)
++||.|++++..|...|+...+-+.-...+. ...+|++ +..+... + ..++++|..+-..
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffi-D~eg~~~--d----~~v~~AL~~L~~~ 276 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIV-TLDAAPW--E----ERFRDALVEIAEH 276 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEE-EESSCTT--S----HHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEE-EEeCCcC--C----HHHHHHHHHHHHh
Confidence 6899999999999999999999998766655 4788888 4333211 1 3566676665443
No 41
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=77.28 E-value=10 Score=31.45 Aligned_cols=47 Identities=9% Similarity=0.087 Sum_probs=37.7
Q ss_pred EEEEEe---cCCCChHHHHHHHHHcCCCeeEEEEEEecCCE-EEEEEEEee
Q 029383 89 KASICC---EYRPELMSDLRQALDALPLKMLKAEISTLGGR-LKNVIVFTS 135 (194)
Q Consensus 89 ~I~i~c---~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~-~~~vf~v~~ 135 (194)
-+-+.. +++||.|++++..|...|+.+.+-+.-...+. ....|++.-
T Consensus 188 sl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~ 238 (267)
T 2qmw_A 188 SLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQA 238 (267)
T ss_dssp EEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEE
T ss_pred EEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEE
Confidence 344556 79999999999999999999999998765543 468888833
No 42
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=61.48 E-value=38 Score=25.28 Aligned_cols=39 Identities=13% Similarity=0.028 Sum_probs=30.0
Q ss_pred eEEEEEEecC---CCChHHHHHHHHHcCCCeeEEEEEEecCCEE
Q 029383 87 LYKASICCEY---RPELMSDLRQALDALPLKMLKAEISTLGGRL 127 (194)
Q Consensus 87 ~v~I~i~c~d---r~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~ 127 (194)
..+|.+.... .||.+.+++++|.+.|+.|... ++....+
T Consensus 103 ~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~i--stse~~i 144 (167)
T 2re1_A 103 VCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMI--STSEIKV 144 (167)
T ss_dssp EEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEE--EECSSEE
T ss_pred EEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEE--EcccCEE
Confidence 3557777774 8999999999999999999874 4544433
No 43
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=60.34 E-value=43 Score=24.93 Aligned_cols=46 Identities=7% Similarity=0.017 Sum_probs=31.5
Q ss_pred EEEEEE-ecCCCChHHHHHHHHHcCCCeeEEEEEEec-CCEEEEEEEE
Q 029383 88 YKASIC-CEYRPELMSDLRQALDALPLKMLKAEISTL-GGRLKNVIVF 133 (194)
Q Consensus 88 v~I~i~-c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~-g~~~~~vf~v 133 (194)
..|.+. -+++||.+.+|+++|.+.|+.|.....+.. +|...-.|++
T Consensus 26 ~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v 73 (167)
T 2re1_A 26 ARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTV 73 (167)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEE
T ss_pred EEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEE
Confidence 456666 478999999999999999998876544321 3433334555
No 44
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=60.00 E-value=20 Score=31.76 Aligned_cols=50 Identities=2% Similarity=-0.100 Sum_probs=38.5
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCE-EEEEEEEeecC
Q 029383 87 LYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGR-LKNVIVFTSCK 137 (194)
Q Consensus 87 ~v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~-~~~vf~v~~~~ 137 (194)
.+-|-+..+++||.|++++..|...|+.+++-+.-...+. -...|+| ++.
T Consensus 34 KTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfV-D~e 84 (429)
T 1phz_A 34 AISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFT-YLD 84 (429)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEE-CBC
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEE-EEe
Confidence 3444466688999999999999999999998888655433 4678888 443
No 45
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=59.75 E-value=37 Score=25.66 Aligned_cols=46 Identities=11% Similarity=0.073 Sum_probs=31.2
Q ss_pred EEEEE-EecCCCChHHHHHHHHHcCCCeeEEEEEEec---CCEEEEEEEE
Q 029383 88 YKASI-CCEYRPELMSDLRQALDALPLKMLKAEISTL---GGRLKNVIVF 133 (194)
Q Consensus 88 v~I~i-~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~---g~~~~~vf~v 133 (194)
..|++ ..+++||.+.+|++.|.+.|+.|.-...++. ++...-.|.+
T Consensus 16 ~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v 65 (178)
T 2dtj_A 16 AKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTC 65 (178)
T ss_dssp EEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEE
T ss_pred EEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEE
Confidence 44555 3478999999999999999977766554444 2233223665
No 46
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=58.61 E-value=43 Score=29.06 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=38.0
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEecCCEEEEEEEE
Q 029383 89 KASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVF 133 (194)
Q Consensus 89 ~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~~~vf~v 133 (194)
++-+.-.|+||.+.+|...|-+.|+.|..-...+.|+...-++-+
T Consensus 333 rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidv 377 (404)
T 1sc6_A 333 RLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI 377 (404)
T ss_dssp EEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred eEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEc
Confidence 345667899999999999999999999999999988877655544
No 47
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=56.56 E-value=44 Score=24.84 Aligned_cols=46 Identities=11% Similarity=0.036 Sum_probs=30.8
Q ss_pred EEEEEEe-cCCCChHHHHHHHHHcCCCeeEEEEEEec---CCEEEEEEEE
Q 029383 88 YKASICC-EYRPELMSDLRQALDALPLKMLKAEISTL---GGRLKNVIVF 133 (194)
Q Consensus 88 v~I~i~c-~dr~GlL~~I~~aL~~lgL~V~~A~Ist~---g~~~~~vf~v 133 (194)
..|.+.. +++||.+.+++.+|.+.|+.|.-...+.. +|...=.|.+
T Consensus 17 a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V 66 (167)
T 2dt9_A 17 AQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTV 66 (167)
T ss_dssp EEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEE
T ss_pred EEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEE
Confidence 3444443 68899999999999999988866543322 2333345666
No 48
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=45.41 E-value=1.2e+02 Score=26.95 Aligned_cols=45 Identities=16% Similarity=0.184 Sum_probs=35.4
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeeEEEEEEec--CCEEEEEEEE
Q 029383 89 KASICCEYRPELMSDLRQALDALPLKMLKAEISTL--GGRLKNVIVF 133 (194)
Q Consensus 89 ~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~--g~~~~~vf~v 133 (194)
.+-+.-.|+||.+.+|...|-+.|+.|-+.++... ++...-++.+
T Consensus 456 ~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~v 502 (529)
T 1ygy_A 456 NLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL 502 (529)
T ss_dssp EEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE
T ss_pred EEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEE
Confidence 44566789999999999999999999999999764 4545444444
No 49
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=38.82 E-value=1e+02 Score=23.14 Aligned_cols=31 Identities=16% Similarity=0.226 Sum_probs=25.8
Q ss_pred EEEEEEec---CCCChHHHHHHHHHcCCCeeEEE
Q 029383 88 YKASICCE---YRPELMSDLRQALDALPLKMLKA 118 (194)
Q Consensus 88 v~I~i~c~---dr~GlL~~I~~aL~~lgL~V~~A 118 (194)
.+|.+.+. +.||.+.+++++|.+.|+.|.-.
T Consensus 96 a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~i 129 (178)
T 2dtj_A 96 GKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI 129 (178)
T ss_dssp EEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEE
T ss_pred EEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEE
Confidence 45666665 78999999999999999999774
No 50
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=37.08 E-value=1.2e+02 Score=23.55 Aligned_cols=46 Identities=13% Similarity=0.140 Sum_probs=31.3
Q ss_pred EEEEEE-ecCCCChHHHHHHHHHcCCCeeEEEE--EEec-CCEEEEEEEE
Q 029383 88 YKASIC-CEYRPELMSDLRQALDALPLKMLKAE--ISTL-GGRLKNVIVF 133 (194)
Q Consensus 88 v~I~i~-c~dr~GlL~~I~~aL~~lgL~V~~A~--Ist~-g~~~~~vf~v 133 (194)
.+|.+. .+++||.+.+|+.+|.+.|+.|.--. ++.. ++...-+|.+
T Consensus 36 a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv 85 (200)
T 4go7_X 36 AKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTC 85 (200)
T ss_dssp EEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEE
T ss_pred EEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEec
Confidence 444443 57999999999999999998876543 3332 3344455666
No 51
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=36.07 E-value=1.9e+02 Score=24.86 Aligned_cols=47 Identities=11% Similarity=0.085 Sum_probs=33.2
Q ss_pred eEEEEEE-ecCCCChHHHHHHHHHcCCCeeEEEEEEec---CCEEEEEEEE
Q 029383 87 LYKASIC-CEYRPELMSDLRQALDALPLKMLKAEISTL---GGRLKNVIVF 133 (194)
Q Consensus 87 ~v~I~i~-c~dr~GlL~~I~~aL~~lgL~V~~A~Ist~---g~~~~~vf~v 133 (194)
...|++. .++++|.+.+|++.|.+.|+.|.....++. +|...-.|++
T Consensus 264 ~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v 314 (421)
T 3ab4_A 264 EAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTC 314 (421)
T ss_dssp EEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEE
T ss_pred EEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEE
Confidence 3456666 578999999999999999999887644333 2333344555
No 52
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=33.38 E-value=26 Score=22.00 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhHHHhhccCCCCC
Q 029383 9 EAERRRRERINAHLDTLRGLVPPNG 33 (194)
Q Consensus 9 ~~Er~RR~~i~~~~~~Lr~lvP~~~ 33 (194)
+++|-+|...++-+.+|+.+.|+..
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD 27 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMD 27 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCC
Confidence 5788889999999999999999653
No 53
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=32.76 E-value=1.5e+02 Score=21.82 Aligned_cols=31 Identities=23% Similarity=0.163 Sum_probs=25.3
Q ss_pred EEEEEEec---CCCChHHHHHHHHHcCCCeeEEE
Q 029383 88 YKASICCE---YRPELMSDLRQALDALPLKMLKA 118 (194)
Q Consensus 88 v~I~i~c~---dr~GlL~~I~~aL~~lgL~V~~A 118 (194)
.+|.+.+. +.||.+.+++++|.+.|+.|.-.
T Consensus 96 a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i 129 (167)
T 2dt9_A 96 AKVSIVGVGLASTPEVPAKMFQAVASTGANIEMI 129 (167)
T ss_dssp EEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEE
T ss_pred EEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEE
Confidence 45667766 48999999999999999999444
No 54
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=28.73 E-value=1.1e+02 Score=19.18 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhHHHhhc
Q 029383 11 ERRRRERINAHLDTLRG 27 (194)
Q Consensus 11 Er~RR~~i~~~~~~Lr~ 27 (194)
||++|.+..++..+-++
T Consensus 1 Ekr~rrrerNR~AA~rc 17 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC 17 (63)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH
Confidence 45555566666666654
No 55
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=28.54 E-value=52 Score=29.05 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=26.8
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeeEEEE
Q 029383 88 YKASICCEYRPELMSDLRQALDALPLKMLKAE 119 (194)
Q Consensus 88 v~I~i~c~dr~GlL~~I~~aL~~lgL~V~~A~ 119 (194)
..+.+.+.|+||.|.+|...|.+.++.|.+..
T Consensus 360 yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~ 391 (444)
T 3mtj_A 360 YYLRLRAFDRPGVLADITRILADSSISIDAMV 391 (444)
T ss_dssp EEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEecCcccHHHHHHHHHHhcCCceeEEe
Confidence 44668899999999999999999999987753
No 56
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=27.03 E-value=2e+02 Score=21.62 Aligned_cols=40 Identities=8% Similarity=0.033 Sum_probs=28.9
Q ss_pred ecCCCChHHHHHHHHHcCCCeeEEEEEE-ec--CCEEEEEEEE
Q 029383 94 CEYRPELMSDLRQALDALPLKMLKAEIS-TL--GGRLKNVIVF 133 (194)
Q Consensus 94 c~dr~GlL~~I~~aL~~lgL~V~~A~Is-t~--g~~~~~vf~v 133 (194)
-+++||.+.+|+.+|.+.|+.|.-..-+ +. +|...-.|++
T Consensus 24 ~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv 66 (181)
T 3s1t_A 24 LPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTC 66 (181)
T ss_dssp EESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEE
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEE
Confidence 4689999999999999999888655322 21 4555455666
No 57
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=26.09 E-value=81 Score=16.71 Aligned_cols=20 Identities=10% Similarity=0.084 Sum_probs=15.3
Q ss_pred CChhhHHHHHHHHHHHHHHH
Q 029383 35 MDKATLLAEVIRQVKELKTN 54 (194)
Q Consensus 35 ~dk~sil~~ai~yi~~L~~~ 54 (194)
++..-+|-+|.+|+...+.+
T Consensus 2 ~~nvq~LLeAAeyLErrEre 21 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRERE 21 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHh
Confidence 45567888999999877664
No 58
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=24.47 E-value=82 Score=16.24 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 029383 38 ATLLAEVIRQVKELKTNAIE 57 (194)
Q Consensus 38 ~sil~~ai~yi~~L~~~~~~ 57 (194)
.|-|-+|-.|+.+|+.+++.
T Consensus 3 vsgliearkyleqlhrklkn 22 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 35577889999999888764
No 59
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=21.07 E-value=58 Score=25.79 Aligned_cols=45 Identities=11% Similarity=0.226 Sum_probs=32.6
Q ss_pred HHHHHHhHHHhhccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhc
Q 029383 15 RERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELKTNAIEASK 60 (194)
Q Consensus 15 R~~i~~~~~~Lr~lvP~~~k~dk~sil~~ai~yi~~L~~~~~~l~~ 60 (194)
|..++.....|+.|+- ..-.....++.+||+|++.|-.=...|+.
T Consensus 53 ~~Dl~~F~~QL~qL~~-~~i~~Tre~v~d~l~YLkkLD~l~~~Lq~ 97 (204)
T 2jqq_A 53 QSDLQKFMTQLDHLIK-DDISNTQEIIKDVLEYLKKLDEIYGSLRN 97 (204)
T ss_dssp HHHHHHHHHHHHHHHH-HSCSTTHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888888888753 22335677899999999999875554443
No 60
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=20.73 E-value=1.3e+02 Score=22.42 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=27.7
Q ss_pred HHHhHHHhhccCCCC----CCCChhhHHHHHHHHHHHH
Q 029383 18 INAHLDTLRGLVPPN----GKMDKATLLAEVIRQVKEL 51 (194)
Q Consensus 18 i~~~~~~Lr~lvP~~----~k~dk~sil~~ai~yi~~L 51 (194)
|.-.|+.|..++|.- .+.-|--||..|.++...|
T Consensus 96 Id~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 96 IDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp HHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred cccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 677899999999942 5566999999999988765
No 61
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=20.52 E-value=3.2e+02 Score=23.34 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=27.8
Q ss_pred EEEEEec---CCCChHHHHHHHHHcCCCeeEEEEEEecCCEE
Q 029383 89 KASICCE---YRPELMSDLRQALDALPLKMLKAEISTLGGRL 127 (194)
Q Consensus 89 ~I~i~c~---dr~GlL~~I~~aL~~lgL~V~~A~Ist~g~~~ 127 (194)
+|.+.+. +.||.+.+++++|.+.|+.|.- |++....+
T Consensus 346 ~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~--is~Se~~i 385 (421)
T 3ab4_A 346 KVSLVGAGMKSHPGVTAEFMEALRDVNVNIEL--ISTSEIRI 385 (421)
T ss_dssp EEEEECGGGTSCTTHHHHHHHHHHHTTCCCCE--EEEETTEE
T ss_pred EEEEEccCcccCccHHHHHHHHHHHCCCCEEE--EEcCCCeE
Confidence 4566665 6899999999999999999983 34444433
Done!