BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029384
         (194 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P24805|TSJT1_TOBAC Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1
          Length = 149

 Score =  129 bits (324), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 63/146 (43%), Positives = 89/146 (60%), Gaps = 3/146 (2%)

Query: 1   MLGVFSSAIVSPPEELV--AAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYT 58
           ML VF  +I  PP EL    AG +    KT    + + F      +    + +   +A++
Sbjct: 1   MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREE-IAESFKTWKQDSTFYHLFNGNFMAFS 59

Query: 59  HQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAP 118
           H NE+PL+ RS  V D++FC+F GALDN   LR+ YGL++ A E ++++EAYK LRDRAP
Sbjct: 60  HGNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAP 119

Query: 119 YPPNHVVGHLSGYFAFIVYDKSTSTL 144
           YPP+ V+  L G FAFI++D   STL
Sbjct: 120 YPPDQVIKELEGKFAFILFDSKASTL 145


>sp|B8DLM7|RPOB_DESVM DNA-directed RNA polymerase subunit beta OS=Desulfovibrio vulgaris
           (strain Miyazaki F / DSM 19637) GN=rpoB PE=3 SV=1
          Length = 1372

 Score = 31.2 bits (69), Expect = 4.5,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 60/153 (39%), Gaps = 14/153 (9%)

Query: 33  LVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQ 92
           L D  +   +  V  +  D VT     +    LR+      D +  L    +D   SLR 
Sbjct: 297 LADDVVNPATGEVLAEAADEVTPGVQER----LREAGI---DRLPILHTKGIDTSSSLRD 349

Query: 93  QYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYF-AFIVYDKSTSTLTNLVRFL 151
              L K+A++    +E Y+ LR  +P  P          F +   YD S      L + L
Sbjct: 350 TLVLDKTADKEAAQVEIYRRLRPSSPPTPEIAESFFDNLFRSADYYDLSPVGRYKLNQRL 409

Query: 152 FIGESLLMDMLPLLMMLTCSKVLAASHLLLSLK 184
            + +SL       L +LT   +L A  +LL LK
Sbjct: 410 GLDQSL------ELRVLTDEDILTAIRVLLHLK 436


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.133    0.367 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,480,019
Number of Sequences: 539616
Number of extensions: 2231869
Number of successful extensions: 6064
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6061
Number of HSP's gapped (non-prelim): 5
length of query: 194
length of database: 191,569,459
effective HSP length: 111
effective length of query: 83
effective length of database: 131,672,083
effective search space: 10928782889
effective search space used: 10928782889
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)