Query 029384
Match_columns 194
No_of_seqs 178 out of 348
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 12:03:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029384.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029384hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01910 Wali7 This domain is p 100.0 1.9E-63 4E-68 427.4 20.0 174 2-177 1-175 (224)
2 PF12481 DUF3700: Aluminium in 100.0 4E-61 8.7E-66 412.4 18.1 174 2-175 1-177 (228)
3 cd01909 betaLS_CarA_N Glutamin 100.0 5.9E-35 1.3E-39 246.3 12.3 100 71-179 47-150 (199)
4 COG0367 AsnB Asparagine syntha 100.0 1.2E-34 2.5E-39 273.3 13.2 121 47-177 43-167 (542)
5 TIGR01536 asn_synth_AEB aspara 100.0 2.9E-33 6.2E-38 255.7 15.2 122 47-178 42-167 (467)
6 PRK09431 asnB asparagine synth 100.0 9.7E-33 2.1E-37 260.7 14.7 120 48-177 45-168 (554)
7 PTZ00077 asparagine synthetase 100.0 1.2E-32 2.5E-37 261.9 14.1 120 48-177 50-175 (586)
8 TIGR03104 trio_amidotrans aspa 100.0 1.6E-32 3.5E-37 259.8 14.5 123 47-178 43-169 (589)
9 PF13537 GATase_7: Glutamine a 100.0 1.2E-32 2.5E-37 212.7 10.2 107 66-176 13-125 (125)
10 PLN02549 asparagine synthase ( 100.0 8.3E-32 1.8E-36 255.9 14.5 120 48-177 45-167 (578)
11 TIGR03108 eps_aminotran_1 exos 100.0 2.7E-30 5.8E-35 244.4 14.8 122 47-178 44-170 (628)
12 cd00712 AsnB Glutamine amidotr 100.0 1.4E-29 3E-34 210.8 14.6 121 49-179 44-168 (220)
13 cd03766 Gn_AT_II_novel Gn_AT_I 100.0 9.2E-29 2E-33 203.8 11.6 116 47-172 48-165 (181)
14 cd00714 GFAT Glutamine amidotr 99.9 2.5E-26 5.4E-31 192.6 13.3 129 46-178 65-201 (215)
15 PRK08525 amidophosphoribosyltr 99.9 1.7E-24 3.6E-29 200.4 13.7 129 46-178 66-203 (445)
16 PF13522 GATase_6: Glutamine a 99.9 3.9E-24 8.5E-29 167.8 13.1 116 47-170 14-133 (133)
17 cd00352 Gn_AT_II Glutamine ami 99.9 3.4E-23 7.3E-28 167.6 13.7 131 47-178 70-207 (220)
18 cd01907 GlxB Glutamine amidotr 99.9 4E-23 8.6E-28 177.5 13.8 143 29-178 62-231 (249)
19 PRK07631 amidophosphoribosyltr 99.9 3.6E-23 7.9E-28 193.6 13.6 128 47-178 77-212 (475)
20 PRK06388 amidophosphoribosyltr 99.9 9E-23 2E-27 190.9 14.7 131 46-179 83-221 (474)
21 PRK00331 glucosamine--fructose 99.9 5.9E-23 1.3E-27 193.5 13.5 130 46-179 66-203 (604)
22 KOG0571 Asparagine synthase (g 99.9 1.3E-23 2.7E-28 195.7 8.7 120 48-176 44-166 (543)
23 PRK09123 amidophosphoribosyltr 99.9 4.6E-23 9.9E-28 192.8 12.5 127 47-177 88-222 (479)
24 TIGR01135 glmS glucosamine--fr 99.9 8.5E-23 1.8E-27 192.6 12.9 129 46-178 65-201 (607)
25 cd00715 GPATase_N Glutamine am 99.9 1.9E-22 4.1E-27 172.2 13.6 128 47-177 66-202 (252)
26 PRK07847 amidophosphoribosyltr 99.9 2.7E-22 5.9E-27 189.2 12.3 129 47-178 90-232 (510)
27 PRK07272 amidophosphoribosyltr 99.9 6.9E-22 1.5E-26 185.4 13.2 129 46-178 77-214 (484)
28 PRK07349 amidophosphoribosyltr 99.9 8.7E-22 1.9E-26 185.4 13.1 129 47-178 100-241 (500)
29 PRK06781 amidophosphoribosyltr 99.9 1.5E-21 3.3E-26 182.4 14.0 128 47-178 77-212 (471)
30 PRK08341 amidophosphoribosyltr 99.9 2E-21 4.3E-26 180.4 14.2 127 46-178 67-202 (442)
31 PLN02440 amidophosphoribosyltr 99.9 4.1E-21 8.9E-26 179.4 13.6 129 47-178 67-203 (479)
32 PTZ00295 glucosamine-fructose- 99.9 3.2E-21 6.9E-26 184.0 12.9 129 46-178 96-232 (640)
33 PRK05793 amidophosphoribosyltr 99.9 4.6E-21 9.9E-26 178.7 13.0 129 47-178 82-217 (469)
34 PRK09246 amidophosphoribosyltr 99.8 9.1E-21 2E-25 177.8 13.1 130 48-179 68-217 (501)
35 TIGR01134 purF amidophosphorib 99.8 4.6E-20 9.9E-25 170.7 13.3 129 47-178 67-203 (442)
36 PTZ00394 glucosamine-fructose- 99.8 1.4E-18 3.1E-23 167.8 12.9 128 46-177 98-256 (670)
37 PLN02981 glucosamine:fructose- 99.7 4E-17 8.7E-22 157.8 11.9 127 47-177 88-253 (680)
38 COG0034 PurF Glutamine phospho 99.3 9E-12 1.9E-16 117.1 11.4 129 46-179 72-211 (470)
39 cd00713 GltS Glutamine amidotr 99.3 1E-10 2.2E-15 108.8 13.7 138 28-175 182-372 (413)
40 COG0449 GlmS Glucosamine 6-pho 99.2 5.4E-11 1.2E-15 114.9 11.1 141 29-177 51-198 (597)
41 KOG0573 Asparagine synthase [A 99.1 4.2E-10 9.1E-15 106.1 9.6 88 71-167 66-153 (520)
42 cd01908 YafJ Glutamine amidotr 99.0 1.1E-09 2.3E-14 94.1 9.7 107 64-175 98-240 (257)
43 PF00310 GATase_2: Glutamine a 98.9 2.1E-08 4.5E-13 91.7 13.1 133 27-171 175-361 (361)
44 KOG0572 Glutamine phosphoribos 98.9 1.1E-08 2.4E-13 95.4 9.9 131 45-180 68-219 (474)
45 TIGR03442 conserved hypothetic 98.7 1.3E-07 2.8E-12 82.1 9.7 100 65-171 102-223 (251)
46 KOG1268 Glucosamine 6-phosphat 97.8 2.2E-05 4.7E-10 76.1 4.0 90 66-155 100-204 (670)
47 PRK11750 gltB glutamate syntha 97.4 0.0012 2.5E-08 70.2 11.5 139 28-175 193-382 (1485)
48 PF09147 DUF1933: Domain of un 96.4 0.032 6.9E-07 48.1 9.6 92 71-173 46-141 (201)
49 PF13230 GATase_4: Glutamine a 94.1 0.11 2.3E-06 45.9 5.5 74 73-149 100-187 (271)
50 COG0067 GltB Glutamate synthas 93.7 0.67 1.5E-05 43.5 10.1 34 77-110 227-264 (371)
51 PF04566 RNA_pol_Rpb2_4: RNA p 58.4 46 0.00099 23.5 5.9 49 100-159 11-61 (63)
52 PRK05761 DNA polymerase I; Rev 46.8 22 0.00048 36.2 3.8 34 131-164 32-65 (787)
53 PF14871 GHL6: Hypothetical gl 30.6 1E+02 0.0022 24.6 4.5 38 30-67 2-39 (132)
54 PF04398 DUF538: Protein of un 30.1 49 0.0011 25.8 2.6 51 136-190 24-74 (110)
55 KOG0537 Cytochrome b5 [Energy 28.9 39 0.00085 26.9 1.9 23 72-94 17-39 (124)
56 PF10611 DUF2469: Protein of u 27.6 87 0.0019 24.6 3.5 34 102-149 10-43 (101)
57 PF09466 Yqai: Hypothetical pr 27.0 48 0.001 24.6 1.9 28 73-100 37-69 (71)
58 PF00173 Cyt-b5: Cytochrome b5 26.3 36 0.00078 23.3 1.1 23 72-94 12-34 (76)
59 PRK06764 hypothetical protein; 26.1 49 0.0011 25.8 1.9 19 68-86 78-96 (105)
60 TIGR03823 FliZ flagellar regul 25.8 50 0.0011 28.2 2.0 19 73-91 32-50 (168)
61 PF05132 RNA_pol_Rpc4: RNA pol 25.7 75 0.0016 25.0 2.9 31 40-71 75-105 (131)
62 PF11213 DUF3006: Protein of u 25.7 52 0.0011 23.4 1.8 32 124-155 3-36 (71)
63 PRK11582 flagella biosynthesis 25.5 51 0.0011 28.1 2.0 19 73-91 32-50 (169)
64 PF08206 OB_RNB: Ribonuclease 24.3 36 0.00078 23.2 0.8 25 128-152 6-30 (58)
65 COG4892 Predicted heme/steroid 24.0 53 0.0012 24.8 1.7 18 72-89 15-32 (81)
66 PRK03946 pdxA 4-hydroxythreoni 23.2 78 0.0017 29.1 2.9 34 99-133 196-237 (307)
67 PRK03371 pdxA 4-hydroxythreoni 22.5 79 0.0017 29.3 2.8 37 99-135 220-262 (326)
68 PRK05312 pdxA 4-hydroxythreoni 21.9 83 0.0018 29.3 2.8 34 99-132 226-265 (336)
69 cd01949 GGDEF Diguanylate-cycl 21.5 2.2E+02 0.0048 20.2 4.5 57 77-138 32-89 (158)
70 cd02056 alpha-1-antitrypsin_li 21.1 97 0.0021 27.6 3.1 22 127-148 338-360 (361)
71 PRK01909 pdxA 4-hydroxythreoni 21.0 91 0.002 28.9 2.9 37 99-135 217-259 (329)
72 cd02057 maspin_like Maspin (ma 20.5 1.1E+02 0.0023 27.7 3.2 21 128-148 347-368 (372)
73 KOG0092 GTPase Rab5/YPT51 and 20.4 92 0.002 27.3 2.6 32 131-167 53-84 (200)
74 cd02054 angiotensinogen Angiot 20.3 1E+02 0.0023 28.0 3.1 22 127-148 346-368 (372)
75 cd02049 bacterial_SERPIN SERin 20.1 1.1E+02 0.0023 27.4 3.1 22 127-148 341-363 (364)
No 1
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=100.00 E-value=1.9e-63 Score=427.41 Aligned_cols=174 Identities=53% Similarity=0.777 Sum_probs=166.8
Q ss_pred cccccccccCCccccccCCCCCCCCCCChHHHHHHhhcCCCCcEEEEeCCceeEEEecCCCCCccccccccCCcEEEEEc
Q 029384 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFE 81 (194)
Q Consensus 2 LavF~k~va~~PeeL~sp~~~~~~~~~~~~~l~~~f~~~~~~a~sv~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFN 81 (194)
||||+|+||++||||+||++.+ .++++++|+++|+++||++|||+||+++.|||++++|++++||+|+++++++|+||
T Consensus 1 laif~~~~~~~p~el~~~~~~~--~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~rl~~~~~~~~~vfn 78 (224)
T cd01910 1 LAVFSKAVAKPPEELVSAGSRT--PAKTAEELLKRFLSANPSAVFVHLGAAGFLAYSHHNQSPLHPRLFAVKDDIFCLFQ 78 (224)
T ss_pred CcccccccCCCChHHcCCCccc--cCCCHHHHHHHHHhcCCCcEEEEcCCceEEEEecCCCCcccCcEECCCCCEEEEEE
Confidence 8999999999999999998753 36788899999999999999999999999999999999999999999999999999
Q ss_pred eeecCHHHHHHHhCCCCcCchHHHHHHHHHHhhhcCCCChhhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEee
Q 029384 82 GALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDM 161 (194)
Q Consensus 82 GeIyN~~eLr~q~G~~kt~sdtevileaY~~~~drGPyp~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~ 161 (194)
|||||+.+||++||+.+++||+|+||++|++||||||||+++++++|+|||||||||++++++|+||||+|+|||||...
T Consensus 79 GeIyN~~eLr~~lg~~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~L~G~FAFvi~D~~~~~l~lARD~~Gi~PLYyg~~ 158 (224)
T cd01910 79 GHLDNLGSLKQQYGLSKTANEAMLVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDKKTSTVFVASDADGSVPLYWGIA 158 (224)
T ss_pred eEEcCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhcCCccHHHHHHhcCeEEEEEEEECCCCEEEEEEcCCCCcceEEEEe
Confidence 99999999999999989999999999999999999999999999999999999999999999999999999999999975
Q ss_pred -CCeEEEEechhHhHhh
Q 029384 162 -LPLLMMLTCSKVLAAS 177 (194)
Q Consensus 162 -~~~l~FaSEiKal~a~ 177 (194)
++.++||||+|+|...
T Consensus 159 ~dG~l~FASElkaL~~~ 175 (224)
T cd01910 159 ADGSVVFSDDVELVKAS 175 (224)
T ss_pred CCCEEEEEeCHHHhhhh
Confidence 8899999999999854
No 2
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=100.00 E-value=4e-61 Score=412.40 Aligned_cols=174 Identities=42% Similarity=0.640 Sum_probs=166.4
Q ss_pred cccccccccCCccccccCCCCCCC--CCCChHHHHHHhhcCCCCcEEEEeCCceeEEEecCCCCCccccccccCCcEEEE
Q 029384 2 LGVFSSAIVSPPEELVAAGSRTPS--PKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCL 79 (194)
Q Consensus 2 LavF~k~va~~PeeL~sp~~~~~~--~~~~~~~l~~~f~~~~~~a~sv~~g~~~~lays~~~~~~~~~~~f~~~~~i~~v 79 (194)
||||+|+||++||||+||++..++ ++|+++||+++|+++||+||||+||+++.|||++++|++++||+|++.|||+|+
T Consensus 1 LavF~k~va~~PeeL~sp~s~~~s~~~~k~~~ell~~F~s~~p~a~s~~~g~~~~lAys~~~~~~l~pR~F~~~DdIfCi 80 (228)
T PF12481_consen 1 LAVFHKSVAKPPEELNSPASSLPSSKKPKGPEELLKDFVSANPNAFSMNFGDSAALAYSHSNQSSLHPRLFAGVDDIFCI 80 (228)
T ss_pred CcccccccCCCchHhcCcccCCCcccCCCCHHHHHHHHHHhCCCeEEEEcCCCEEEEEecCCCCccccccccccCCEEEE
Confidence 899999999999999999976443 699999999999999999999999999999999999999999999999999999
Q ss_pred EceeecCHHHHHHHhCCCCcCchHHHHHHHHHHhhhcCCCChhhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEE
Q 029384 80 FEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLM 159 (194)
Q Consensus 80 FNGeIyN~~eLr~q~G~~kt~sdtevileaY~~~~drGPyp~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~ 159 (194)
|.|.|.|+..|||||||+|++||+++||||||++|||||||+||||++|+|.|||||||++++++|+|||+-|.=|||+.
T Consensus 81 F~G~L~Nl~~L~qqYGLsK~~nEa~~vIEAYrtLRDRgPyPadqvv~~L~G~FaFVlyD~~~~tvf~A~d~~G~vpLyWG 160 (228)
T PF12481_consen 81 FLGSLENLCSLRQQYGLSKGANEAMFVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDSKTGTVFVARDSDGSVPLYWG 160 (228)
T ss_pred EecchhhHHHHHHHhCcCcCcchhhhHHHHHHHhhccCCCChHHHHHhccCceEEEEEecCCCcEEEeecCCCCcceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred e-eCCeEEEEechhHhH
Q 029384 160 D-MLPLLMMLTCSKVLA 175 (194)
Q Consensus 160 ~-~~~~l~FaSEiKal~ 175 (194)
. .++.++|++++.-|-
T Consensus 161 i~~DGslv~Sdd~~~ik 177 (228)
T PF12481_consen 161 IAADGSLVFSDDLELIK 177 (228)
T ss_pred EeCCCCEEEcCCHHHHH
Confidence 7 468899998887664
No 3
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=100.00 E-value=5.9e-35 Score=246.32 Aligned_cols=100 Identities=21% Similarity=0.115 Sum_probs=92.0
Q ss_pred ccCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhhhcCCCChhhhhcccccceEEEEEECCCCeEEE
Q 029384 71 AVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLTN 146 (194)
Q Consensus 71 ~~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~drGPyp~~~~l~~L~GmFAFvIyD~~~~~lf~ 146 (194)
+..++++++|||||||+.|||+++ |. .++.||+|||+++|++|| .+++++|+|||||+|||++ ++|++
T Consensus 47 ~~~~~~~iv~NGEIYN~~eLr~~L~~~g~~f~t~sDtEvll~~y~~~G-------~~~l~~L~G~FAfai~D~~-~~L~l 118 (199)
T cd01909 47 ARSETGTAYLIGELYNRDELRSLLGAGEGRSAVLGDAELLLLLLTRLG-------LHAFRLAEGDFCFFIEDGN-GRLTL 118 (199)
T ss_pred eeCCCEEEEEEEEEeCHHHHHHHHHhcCCCcCCCCHHHHHHHHHHHHh-------HHHHHHcCEEEEEEEEcCC-CEEEE
Confidence 445689999999999999999998 44 389999999999999876 5899999999999999999 99999
Q ss_pred EeccCCceeEEEEeeCCeEEEEechhHhHhhcc
Q 029384 147 LVRFLFIGESLLMDMLPLLMMLTCSKVLAASHL 179 (194)
Q Consensus 147 ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~~ 179 (194)
||||+|+|||||+.. +.++||||+|+|++++.
T Consensus 119 aRDr~GikPLYy~~~-~~l~FASEikaLla~~~ 150 (199)
T cd01909 119 ATDHAGSVPVYLVQA-GEVWATTELKLLAAHEG 150 (199)
T ss_pred EECCCCCcCeEEEEC-CeEEEEeCHHHHhhCcC
Confidence 999999999999988 99999999999998754
No 4
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-34 Score=273.26 Aligned_cols=121 Identities=20% Similarity=0.276 Sum_probs=110.1
Q ss_pred EEeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhhhcCCCChh
Q 029384 47 VQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYPPN 122 (194)
Q Consensus 47 v~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~drGPyp~~ 122 (194)
+.||+ .+|+++...+ -+|||..+.++++++|||||||+.|||+++ |+ .+|.||||||+++|++|+ .
T Consensus 43 ~~~gh-~rL~i~d~~~--g~QP~~~~~~~~~l~~NGEIYN~~elr~~l~~~g~~f~t~sDtEvil~~y~~~g-------~ 112 (542)
T COG0367 43 ALLGH-RRLSIVDLSG--GRQPMIKEGGKYAIVYNGEIYNVEELRKELREAGYEFRTYSDTEVILTLYEEWG-------E 112 (542)
T ss_pred ceeee-eEEEEecccc--CCCCcccCCCcEEEEECCEeeeHHHHHHHHHhcCceeccccchHHHHHHHHHHH-------H
Confidence 55677 8888887655 467777777889999999999999999998 45 599999999999999987 5
Q ss_pred hhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhh
Q 029384 123 HVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAAS 177 (194)
Q Consensus 123 ~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~ 177 (194)
+|+++|+|||||+|||.++++||+||||||||||||+.+++.++||||+|+|+++
T Consensus 113 ~~~~~l~G~fAfai~d~~~~~l~laRD~~GikPLyy~~~~~~l~faSE~Kal~~~ 167 (542)
T COG0367 113 DCVEHLNGMFAFAIYDETRQKLFLARDPFGVKPLYYTSKNENLAFASEIKALLAH 167 (542)
T ss_pred HHHHHhccceEEEEEECCCCEEEEEecCCCccccEEEecCCceEEEechhhhhhC
Confidence 7999999999999999999999999999999999999999999999999999988
No 5
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=100.00 E-value=2.9e-33 Score=255.73 Aligned_cols=122 Identities=20% Similarity=0.227 Sum_probs=111.4
Q ss_pred EEeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHh---CCC-CcCchHHHHHHHHHHhhhcCCCChh
Q 029384 47 VQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPPN 122 (194)
Q Consensus 47 v~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~~-kt~sdtevileaY~~~~drGPyp~~ 122 (194)
+.+|+ ++|+++..+.. .||+.+.+++++++|||||||+.|||++| |+. ++.||+|+|+++|++|| .
T Consensus 42 ~~lgh-~rl~i~d~~~~--~qP~~~~~~~~~lv~nGeiyN~~eL~~~l~~~g~~~~~~~D~e~il~~y~~~g-------~ 111 (467)
T TIGR01536 42 AILGH-RRLAIIDLSGG--AQPMSNEGKTYVIVFNGEIYNHEELREELEAKGYTFQTDSDTEVILHLYEEWG-------E 111 (467)
T ss_pred EEEEE-EEeEEeCCCCC--CCeeECCCCCEEEEEeeEEcCHHHHHHHHHhcCCccCCCCHHHHHHHHHHHHH-------H
Confidence 56777 88999876433 78888888999999999999999999997 553 89999999999999886 5
Q ss_pred hhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhhc
Q 029384 123 HVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASH 178 (194)
Q Consensus 123 ~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~ 178 (194)
+++++|+|||||+|||++++++|+||||+|+|||||+..++.++||||+|+|++.+
T Consensus 112 ~~~~~l~G~fa~~i~D~~~~~l~laRD~~G~kPLyy~~~~~~~~faSe~kaL~~~~ 167 (467)
T TIGR01536 112 ECVDRLDGMFAFALWDSKKGELFLARDRFGIKPLYYAYDGGQLYFASEIKALLAHP 167 (467)
T ss_pred HHHHHcCCcEEEEEEECCCCEEEEEECCCCCcCeEEEEECCEEEEEecHHHHHhcc
Confidence 89999999999999999999999999999999999999999999999999999875
No 6
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=100.00 E-value=9.7e-33 Score=260.67 Aligned_cols=120 Identities=18% Similarity=0.176 Sum_probs=106.9
Q ss_pred EeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHhC--C-CCcCchHHHHHHHHHHhhhcCCCChhhh
Q 029384 48 QVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG--L-AKSANEVILVIEAYKALRDRAPYPPNHV 124 (194)
Q Consensus 48 ~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~G--~-~kt~sdtevileaY~~~~drGPyp~~~~ 124 (194)
.+|+ ++|+++... .-.||+++.+++++++|||||||+.|||+++. + .+|.||+|||+++|++|| .++
T Consensus 45 ~lgh-~RLsIid~~--~g~QP~~~~~~~~~lv~NGEIyN~~eLr~~L~~~~~f~t~sD~Evil~ly~~~G-------~~~ 114 (554)
T PRK09431 45 ILGH-ERLSIVDVN--GGAQPLYNEDGTHVLAVNGEIYNHQELRAELGDKYAFQTGSDCEVILALYQEKG-------PDF 114 (554)
T ss_pred EEEE-EEeeecCCC--CCCCCCCcCCCCEEEEEEEEEecHHHHHHHHhccCCcCCCCHHHHHHHHHHHHH-------HHH
Confidence 4566 788888753 34677888899999999999999999999984 3 389999999999999876 579
Q ss_pred hcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeC-CeEEEEechhHhHhh
Q 029384 125 VGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDML-PLLMMLTCSKVLAAS 177 (194)
Q Consensus 125 l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~-~~l~FaSEiKal~a~ 177 (194)
+++|+|||||||||++++++++||||+|+|||||...+ +.++||||+|+|++.
T Consensus 115 ~~~L~G~FAf~i~D~~~~~l~laRD~~GikPLyy~~~~~~~~~faSE~kaL~~~ 168 (554)
T PRK09431 115 LDDLDGMFAFALYDSEKDAYLIARDPIGIIPLYYGYDEHGNLYFASEMKALVPV 168 (554)
T ss_pred HHhCCCceEEEEEECCCCEEEEEeCCCCCcceEEEEeCCCeEEEecchHHHHHh
Confidence 99999999999999999999999999999999998876 899999999999764
No 7
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=100.00 E-value=1.2e-32 Score=261.93 Aligned_cols=120 Identities=18% Similarity=0.189 Sum_probs=106.1
Q ss_pred EeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHh---CCC-CcCchHHHHHHHHHHhhhcCCCChh-
Q 029384 48 QVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPPN- 122 (194)
Q Consensus 48 ~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~~-kt~sdtevileaY~~~~drGPyp~~- 122 (194)
.+|+ .+|+++.... -.||+.+.+++++++|||||||+.+||++| |+. +|.||+|||+++|++|| .
T Consensus 50 ~lgh-~RLsIvd~~~--g~QP~~~~d~~~~lv~NGEIYN~~eLr~~L~~~g~~f~t~sD~Evil~ly~~~G-------~~ 119 (586)
T PTZ00077 50 ILAH-ERLAIVDLSD--GKQPLLDDDETVALMQNGEIYNHWEIRPELEKEGYKFSSNSDCEIIGHLYKEYG-------PK 119 (586)
T ss_pred EEEe-ccceecCCCC--CCCCcCCCCCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhC-------HH
Confidence 4566 7788876532 467888888999999999999999999998 553 89999999999999865 4
Q ss_pred hhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEe-eCCeEEEEechhHhHhh
Q 029384 123 HVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMD-MLPLLMMLTCSKVLAAS 177 (194)
Q Consensus 123 ~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~-~~~~l~FaSEiKal~a~ 177 (194)
+++++|+|||||||||++++++++||||+|+|||||.. .++.++||||+|+|++.
T Consensus 120 ~~l~~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyy~~~~~g~~~faSE~kaL~~~ 175 (586)
T PTZ00077 120 DFWNHLDGMFATVIYDMKTNTFFAARDHIGIIPLYIGYAKDGSIWFSSELKALHDQ 175 (586)
T ss_pred HHHHhcCCCEEEEEEECCCCEEEEEECCCCCcCeEEEEecCCeEEEEecHHHHHHh
Confidence 79999999999999999999999999999999999986 56789999999999864
No 8
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=100.00 E-value=1.6e-32 Score=259.76 Aligned_cols=123 Identities=21% Similarity=0.283 Sum_probs=110.1
Q ss_pred EEeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHh---CCC-CcCchHHHHHHHHHHhhhcCCCChh
Q 029384 47 VQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPPN 122 (194)
Q Consensus 47 v~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~~-kt~sdtevileaY~~~~drGPyp~~ 122 (194)
+.+|+ ++|++++... .-.||+.+.+++++++|||||||+.|||+++ |+. +|.||+|||+++|++|| .
T Consensus 43 ~~lgh-~rl~i~~~~~-~~~QP~~~~~~~~~~v~nGeiyN~~eL~~~l~~~g~~f~~~sD~Evil~~y~~~G-------~ 113 (589)
T TIGR03104 43 VALGH-RRLKIIDLSE-ASQQPMVDAELGLALVFNGCIYNYRELRAELEALGYRFFSDGDTEVILKAYHAWG-------R 113 (589)
T ss_pred EEEEE-EeeEecCCCc-CCCCCeECCCCCEEEEECCEecCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHH-------H
Confidence 56776 7788876533 3467788888899999999999999999997 653 89999999999999887 5
Q ss_pred hhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhhc
Q 029384 123 HVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASH 178 (194)
Q Consensus 123 ~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~ 178 (194)
+|+++|+|||||+|||..++++++||||+|+|||||+..++.++||||+|+|++.+
T Consensus 114 ~~~~~l~G~fa~~i~d~~~~~l~laRD~~G~kPLyy~~~~~~~~faSe~kaLl~~~ 169 (589)
T TIGR03104 114 DCVSRFNGMFAFAIWERDSGRLLLARDRLGIKPLYYAEDAGRLRFASSLPALLAAG 169 (589)
T ss_pred HHHHHhhcceEEEEEeCCCCEEEEEecCCCCCCeEEEEeCCEEEEEeCHHHHHhCC
Confidence 89999999999999999999999999999999999999999999999999999865
No 9
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A.
Probab=99.98 E-value=1.2e-32 Score=212.66 Aligned_cols=107 Identities=22% Similarity=0.264 Sum_probs=74.6
Q ss_pred ccccc-ccCCcEEEEEceeecCHHHHHHHhC---C-CCcCchHHHHHHHHHHhhhcCCCChhhhhcccccceEEEEEECC
Q 029384 66 RQRSF-AVKDEIFCLFEGALDNLGSLRQQYG---L-AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKS 140 (194)
Q Consensus 66 ~~~~f-~~~~~i~~vFNGeIyN~~eLr~q~G---~-~kt~sdtevileaY~~~~drGPyp~~~~l~~L~GmFAFvIyD~~ 140 (194)
.||+. +..++++++|||+|||+.||++++. . .++.+|+|+++++|+++.++| .+++++|+|+|||||||++
T Consensus 13 ~QP~~~~~~~~~~l~~nG~i~N~~eL~~~l~~~g~~~~~~~D~e~i~~~~~~~~~~~----~~~~~~l~G~fa~v~~d~~ 88 (125)
T PF13537_consen 13 AQPFVSSEDGELVLVFNGEIYNREELRRELEERGHQFSSDSDSELILHLYEEYREWG----EDFLKRLDGPFAFVIWDKD 88 (125)
T ss_dssp ------------EEEEEEEES-HHHHHHTSSSS---S--SSHHHHHHHHHHH---HG----GGGGGT--EEEEEEEEETT
T ss_pred ccccccccccCEEEEEEEEEEChHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHH----HHHHHhCCceEEEEEEeCC
Confidence 45565 6788999999999999999999983 3 378999999999999855566 6899999999999999999
Q ss_pred CCeEEEEeccCCceeEEEEeeC-CeEEEEechhHhHh
Q 029384 141 TSTLTNLVRFLFIGESLLMDML-PLLMMLTCSKVLAA 176 (194)
Q Consensus 141 ~~~lf~ARDr~GiKPlyY~~~~-~~l~FaSEiKal~a 176 (194)
++++|+||||+|+|||||+..+ +.++||||+|+|+|
T Consensus 89 ~~~l~~~rD~~G~rpLyy~~~~g~~~~faSe~~~L~a 125 (125)
T PF13537_consen 89 KKRLFLARDRFGIRPLYYGRTDGNGLAFASEIKALLA 125 (125)
T ss_dssp E--EEEEE-TT--S--EEEEETT-EEEEESSHHHHHT
T ss_pred CcEEEEEECCCCCCCeEEEEeCCCEEEEEEcHHHhcC
Confidence 9999999999999999999996 79999999999986
No 10
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=99.97 E-value=8.3e-32 Score=255.90 Aligned_cols=120 Identities=15% Similarity=0.169 Sum_probs=106.4
Q ss_pred EeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHhC-C-CCcCchHHHHHHHHHHhhhcCCCChhhhh
Q 029384 48 QVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG-L-AKSANEVILVIEAYKALRDRAPYPPNHVV 125 (194)
Q Consensus 48 ~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~G-~-~kt~sdtevileaY~~~~drGPyp~~~~l 125 (194)
.+|+ .+|++... ..-.||+++.+++++++|||||||+.+||++++ + .+|.||+|||+++|++|| .+++
T Consensus 45 ~Lgh-~RLsI~d~--~~g~QP~~~~~~~~~lv~NGEIyN~~eLr~~L~~~~f~t~sD~Evil~ly~~~G-------~~~~ 114 (578)
T PLN02549 45 YLAH-ERLAIMDP--ESGDQPLYNEDKTIVVTANGEIYNHKELREKLKLHKFRTGSDCEVIAHLYEEHG-------EEFV 114 (578)
T ss_pred EEEE-eeeeEeCC--CCCCCCcCcCCCCEEEEEEEEEEcHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH-------HHHH
Confidence 4565 77788765 234777888889999999999999999999985 3 489999999999999876 5899
Q ss_pred cccccceEEEEEECCCCeEEEEeccCCceeEEEEee-CCeEEEEechhHhHhh
Q 029384 126 GHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDM-LPLLMMLTCSKVLAAS 177 (194)
Q Consensus 126 ~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~-~~~l~FaSEiKal~a~ 177 (194)
++|+|||||||||++++++++||||+|+|||||... ++.++||||+|+|++.
T Consensus 115 ~~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyyg~~~~g~~~fASE~KaL~~~ 167 (578)
T PLN02549 115 DMLDGMFSFVLLDTRDNSFIAARDHIGITPLYIGWGLDGSVWFASEMKALCDD 167 (578)
T ss_pred HhCCCceEEEEEECCCCEEEEEECCCCCCCeEEEEecCCeEEEEecHHHHHHH
Confidence 999999999999999999999999999999999875 6789999999999875
No 11
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=99.97 E-value=2.7e-30 Score=244.40 Aligned_cols=122 Identities=19% Similarity=0.272 Sum_probs=108.3
Q ss_pred EEeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHh---CCC-CcCchHHHHHHHHHHhhhcCCCChh
Q 029384 47 VQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPPN 122 (194)
Q Consensus 47 v~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~~-kt~sdtevileaY~~~~drGPyp~~ 122 (194)
+.+|+ ++|++++.. .-.||+.+.+++++++|||||||+.|||+++ |+. +|.||+|+|+++|++|| .
T Consensus 44 ~~lgh-~rl~i~d~~--~~~qP~~~~~~~~~lv~nGei~N~~eL~~~l~~~g~~~~~~sD~Evi~~~~~~~g-------~ 113 (628)
T TIGR03108 44 IGLGH-RRLSIIDLS--GGQQPLFNEDGSVVVVFNGEIYNFQELVAELQALGHVFRTRSDTEVIVHAWEEWG-------E 113 (628)
T ss_pred EEEEE-EeeeecCCC--CCCCCcCcCCCCEEEEECCeECCHHHHHHHHHhcCCccCCCChHHHHHHHHHHHH-------H
Confidence 55777 888888652 3467788888999999999999999999997 553 89999999999999887 5
Q ss_pred hhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEee-CCeEEEEechhHhHhhc
Q 029384 123 HVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDM-LPLLMMLTCSKVLAASH 178 (194)
Q Consensus 123 ~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~-~~~l~FaSEiKal~a~~ 178 (194)
+|+++|+|||||+|||+.++++++||||+|+|||||+.. ++.++||||+|+|++..
T Consensus 114 ~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~PLyy~~~~~~~~~faSe~~al~~~~ 170 (628)
T TIGR03108 114 ACVERFRGMFAFALWDRNQETLFLARDRLGIKPLYYALLADGWFIFGSELKALTAHP 170 (628)
T ss_pred HHHHHcCCCEEEEEEECCCCEEEEEECCCCCcceEEEEeCCCEEEEEecHHHHHhCC
Confidence 899999999999999999999999999999999999974 67899999999999764
No 12
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=99.97 E-value=1.4e-29 Score=210.82 Aligned_cols=121 Identities=18% Similarity=0.182 Sum_probs=105.2
Q ss_pred eCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHhCC----CCcCchHHHHHHHHHHhhhcCCCChhhh
Q 029384 49 VGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGL----AKSANEVILVIEAYKALRDRAPYPPNHV 124 (194)
Q Consensus 49 ~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~G~----~kt~sdtevileaY~~~~drGPyp~~~~ 124 (194)
+|+ ++++.+... .-.||+....+++++++||+|||+.+|+++++. .++.||+|+|+++|++|| .++
T Consensus 44 lgh-~rl~~~~~~--~~~qP~~~~~~~~~~~~nG~i~N~~~L~~~l~~~~~~~~~~sD~e~l~~~~~~~g-------~~~ 113 (220)
T cd00712 44 LGH-RRLSIIDLS--GGAQPMVSEDGRLVLVFNGEIYNYRELRAELEALGHRFRTHSDTEVILHLYEEWG-------EDC 113 (220)
T ss_pred EEE-EeeeecCcc--cCCCCeEeCCCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCChHHHHHHHHHHHh-------HHH
Confidence 344 555554433 456777777789999999999999999999843 389999999999999875 589
Q ss_pred hcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhhcc
Q 029384 125 VGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASHL 179 (194)
Q Consensus 125 l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~~ 179 (194)
+++|+|+|||+|||++++++++||||+|++||||...++.++||||+|+|++...
T Consensus 114 ~~~l~G~fa~vi~d~~~~~l~~~rD~~G~~pLy~~~~~~~~~~aSe~~~l~~~~~ 168 (220)
T cd00712 114 LERLNGMFAFALWDKRKRRLFLARDRFGIKPLYYGRDGGGLAFASELKALLALPG 168 (220)
T ss_pred HHHhhheEEEEEEECCCCEEEEEECCCCCEeeEEEEECCEEEEEcchHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999998653
No 13
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=99.96 E-value=9.2e-29 Score=203.85 Aligned_cols=116 Identities=19% Similarity=0.128 Sum_probs=96.0
Q ss_pred EEeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHhCCCCcCchHHHHHHHHHHhhhcCCCChhhhhc
Q 029384 47 VQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVG 126 (194)
Q Consensus 47 v~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~G~~kt~sdtevileaY~~~~drGPyp~~~~l~ 126 (194)
+.||+ ++|++... ..-.||+....++++++|||||||+.+||+ +.||||+|+++|+++++. .-...++++
T Consensus 48 ~~l~~-~rL~i~~~--~~~~QP~~~~~~~~~lv~NGeIyN~~~l~~------s~sDtEvi~~l~~~~g~~-~~~i~~~~~ 117 (181)
T cd03766 48 LLFTS-SVLSLRGD--HVTRQPLVDQSTGNVLQWNGELYNIDGVED------EENDTEVIFELLANCSSE-SQDILDVLS 117 (181)
T ss_pred EEEEe-eEEEecCC--CCCCCCCEeCCCCEEEEECCEEECcccccC------CCCHHHHHHHHHHHHhhh-HHHHHHHHH
Confidence 45555 77888763 234566666667899999999999999996 899999999999987620 001127999
Q ss_pred ccccceEEEEEECCCCeEEEEeccCCceeEEEEee--CCeEEEEechh
Q 029384 127 HLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDM--LPLLMMLTCSK 172 (194)
Q Consensus 127 ~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~--~~~l~FaSEiK 172 (194)
+|+|+|||||||+.++++++||||+|+|||||... ++.|+|||+.-
T Consensus 118 ~L~G~fA~vi~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~l~~aS~~~ 165 (181)
T cd03766 118 SIEGPFAFIYYDASENKLYFGRDCLGRRSLLYKLDPNGFELSISSVSG 165 (181)
T ss_pred hcccceEEEEEeCCCCEEEEEECCCCCcCcEEEeeCCCCcEEEEEccC
Confidence 99999999999999999999999999999999997 78999999963
No 14
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=99.94 E-value=2.5e-26 Score=192.57 Aligned_cols=129 Identities=13% Similarity=0.123 Sum_probs=106.0
Q ss_pred EEEeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhhhcCCCCh
Q 029384 46 SVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYPP 121 (194)
Q Consensus 46 sv~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~drGPyp~ 121 (194)
.+-+|| .++|........-.||+....+++++++||+|||+.+||+++ |+ .+++||+|+|+++|..+++.|+-+.
T Consensus 65 ~~~igH-~R~at~g~~~~~n~qPf~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~sDsEvi~~l~~~~~~~~~~~~ 143 (215)
T cd00714 65 HVGIGH-TRWATHGEPTDVNAHPHRSCDGEIAVVHNGIIENYAELKEELEAKGYKFESETDTEVIAHLIEYYYDGGLDLL 143 (215)
T ss_pred cEEEEE-EEccCCCCCCccCCCCCCcCCCCEEEEEeEEEcCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCCCHH
Confidence 566777 677766533233466676666799999999999999999998 65 3899999999999998875443111
Q ss_pred ---hhhhcccccceEEEEEECCCC-eEEEEeccCCceeEEEEeeCCeEEEEechhHhHhhc
Q 029384 122 ---NHVVGHLSGYFAFIVYDKSTS-TLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASH 178 (194)
Q Consensus 122 ---~~~l~~L~GmFAFvIyD~~~~-~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~ 178 (194)
.+++++|+|+|||+|||+.++ ++++||| +|||||...++.++||||+|+|.++.
T Consensus 144 ~ai~~~~~~l~G~fa~~~~d~~~~~~l~~~RD---~~PL~~~~~~~~~~~aSE~~al~~~~ 201 (215)
T cd00714 144 EAVKKALKRLEGAYALAVISKDEPDEIVAARN---GSPLVIGIGDGENFVASDAPALLEHT 201 (215)
T ss_pred HHHHHHHHHhccceEEEEEEeCCCCEEEEEEC---CCCcEEEEcCCeEEEEECHHHHHHhc
Confidence 169999999999999999875 9999999 59999999999999999999999753
No 15
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.92 E-value=1.7e-24 Score=200.37 Aligned_cols=129 Identities=12% Similarity=0.091 Sum_probs=102.4
Q ss_pred EEEeCCceeEEEecCCCCCccccccc--cCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhhhcCCC
Q 029384 46 SVQVGDNVTLAYTHQNESPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPY 119 (194)
Q Consensus 46 sv~~g~~~~lays~~~~~~~~~~~f~--~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~drGPy 119 (194)
.+.+|| +++|..-....--.||+.. ..++++++|||+||||.+||++| |+ .+|+||+|+|+++|.++++ +..
T Consensus 66 ~~~iGH-~R~at~g~~~~~naqP~~~~~~~g~~~lvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvi~~l~~~~~~-~~~ 143 (445)
T PRK08525 66 EIAIGH-NRYSTAGNDSILDAQPVFARYDLGEIAIVHNGNLVNKKEVRSRLIQDGAIFQTNMDTENLIHLIARSKK-ESL 143 (445)
T ss_pred cEEEee-cccccCCCCCCCCCCCeEeecCCCCEEEEEEEEEECHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHcC-CCH
Confidence 466787 7777664332233556665 46899999999999999999997 66 4899999999999987642 111
Q ss_pred C--hhhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEee-CCeEEEEechhHhHhhc
Q 029384 120 P--PNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDM-LPLLMMLTCSKVLAASH 178 (194)
Q Consensus 120 p--~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~-~~~l~FaSEiKal~a~~ 178 (194)
. ..+++++|+|+|||+++|+ ++++++||++|+|||||... ++.++||||++||-..+
T Consensus 144 ~ea~~~~~~~L~G~fa~vi~~~--~~l~~~RD~~GirPL~~g~~~~~~~~~ASE~~al~~~g 203 (445)
T PRK08525 144 KDRIIEALKKIIGAYCLVLLSR--SKMFAIRDPHGVRPLSLGRLKDGGYIVASETCAFDLIG 203 (445)
T ss_pred HHHHHHHHHhcCCceEEEEEeC--CEEEEEECCCCCCCeEEEEecCCEEEEEECHHHhhccC
Confidence 0 1268999999999999995 78999999999999999975 56899999999995443
No 16
>PF13522 GATase_6: Glutamine amidotransferase domain
Probab=99.92 E-value=3.9e-24 Score=167.77 Aligned_cols=116 Identities=19% Similarity=0.164 Sum_probs=99.1
Q ss_pred EEeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhhhcCCCChh
Q 029384 47 VQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYPPN 122 (194)
Q Consensus 47 v~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~drGPyp~~ 122 (194)
+-+|| +++|-.-.......||.....+++++++||+|+|+.+||+++ |+ .++.||+|+|.+++++++ .
T Consensus 14 ~~lgH-~R~AT~G~~~~~~~hPf~~~~g~~~~~HNG~i~n~~~L~~~l~~~g~~~~~~tDSEii~~li~~~g-------~ 85 (133)
T PF13522_consen 14 AALGH-TRYATVGSPTEENNHPFSNRDGRIALAHNGNIDNYKELREELGEKGHPFESDTDSEIIAALIHRWG-------E 85 (133)
T ss_pred EEEEE-eecCCCCCCCCcCCCCCcCCCCCEEEEECCeecCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHHH-------H
Confidence 56677 677765544222236666677899999999999999999998 44 388999999999997665 5
Q ss_pred hhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeCCeEEEEec
Q 029384 123 HVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTC 170 (194)
Q Consensus 123 ~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~~~l~FaSE 170 (194)
+++++|+|+|||++||+..++++++|||+|++||||...++.++||||
T Consensus 86 ~~l~~l~G~~a~~~~~~~~~~l~~~rd~~g~~PL~~~~~~~~~~~ASE 133 (133)
T PF13522_consen 86 EALERLDGAFAFAVYDKTPNKLFLARDPLGIRPLYYGRDGDGYVFASE 133 (133)
T ss_pred HHHHHhcCceEEEEEEcCCCEEEEEEcCCCCCCEEEEEcCCEEEEEeC
Confidence 799999999999999999999999999999999999999999999998
No 17
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=99.90 E-value=3.4e-23 Score=167.61 Aligned_cols=131 Identities=18% Similarity=0.157 Sum_probs=105.4
Q ss_pred EEeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHhC---C-CCcCchHHHHHHHHHHhhhcCCC--C
Q 029384 47 VQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG---L-AKSANEVILVIEAYKALRDRAPY--P 120 (194)
Q Consensus 47 v~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~G---~-~kt~sdtevileaY~~~~drGPy--p 120 (194)
+-+|| .+.|-.........||.....+++++++||+|+|+.+||+++. . .++.||+|+++++|..|++.+.. -
T Consensus 70 ~~i~H-~R~at~g~~~~~n~hPf~~~~~~~~~~hNG~i~n~~~l~~~l~~~~~~~~~~tDse~i~~~~~~~~~~~~~~~~ 148 (220)
T cd00352 70 VALGH-VRLATNGLPSEANAQPFRSEDGRIALVHNGEIYNYRELREELEARGYRFEGESDSEVILHLLERLGREGGLFEA 148 (220)
T ss_pred EEEEE-eEeeecCCCCCCCCCCcCcCCCCEEEEECcEEEcHHHHHHHHHHCCCeecCCCHHHHHHHHHHHHhccCCHHHH
Confidence 44455 4454433223344566655557999999999999999999873 2 48999999999999998743310 0
Q ss_pred hhhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEee-CCeEEEEechhHhHhhc
Q 029384 121 PNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDM-LPLLMMLTCSKVLAASH 178 (194)
Q Consensus 121 ~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~-~~~l~FaSEiKal~a~~ 178 (194)
..+++++++|.|||+|||..+++++++||++|.+||||... ++.++|+||.+++.+.+
T Consensus 149 ~~~~~~~~~G~~~~~~~d~~~~~l~~~rd~~G~~pL~~~~~~~~~~~~aSe~~~~~~~~ 207 (220)
T cd00352 149 VEDALKRLDGPFAFALWDGKPDRLFAARDRFGIRPLYYGITKDGGLVFASEPKALLALP 207 (220)
T ss_pred HHHHHHhCCccEEEEEEECCCCEEEEEECCCCCCCeEEEEeCCCeEEEEecHHHHhhcC
Confidence 13689999999999999999999999999999999999999 99999999999999765
No 18
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.90 E-value=4e-23 Score=177.54 Aligned_cols=143 Identities=10% Similarity=0.069 Sum_probs=106.9
Q ss_pred ChHHHHHHhhcCCCCcEEEEeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHH
Q 029384 29 TSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVI 104 (194)
Q Consensus 29 ~~~~l~~~f~~~~~~a~sv~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdte 104 (194)
...++.+.+.. .+-.-.+.+|| +++|-.-.......||+.. +++++++||+|||+.+||+++ |. ..++||+|
T Consensus 62 ~~~~v~~~~~~-~~~~~~~~igH-~R~aT~g~~~~~n~qP~~~--~~~~lvhNG~I~N~~~lr~~L~~~g~~~~~~sDsE 137 (249)
T cd01907 62 YPEDIARRYDL-EEYKGYHWIAH-TRQPTNSAVWWYGAHPFSI--GDIAVVHNGEISNYGSNREYLERFGYKFETETDTE 137 (249)
T ss_pred CHHHHHhhcCc-hheEEEEEEEE-EeccCCCCCCccCCCCeec--CCEEEEeCCeecCHHHHHHHHHhcCCCCCCCCHHH
Confidence 45556555432 22122566777 6666533222234555654 399999999999999999987 55 48999999
Q ss_pred HHHHHHHHhhh-cCCCChh----------------------hhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEee
Q 029384 105 LVIEAYKALRD-RAPYPPN----------------------HVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDM 161 (194)
Q Consensus 105 vileaY~~~~d-rGPyp~~----------------------~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~ 161 (194)
+|+++|+.+.. +| .+.+ .++++|+|+|||+++|. +.++++|||+|+|||||...
T Consensus 138 vi~~ll~~~~~~~g-~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~--~~~~~~RD~~G~rPL~~g~~ 214 (249)
T cd01907 138 VIAYYLDLLLRKGG-LPLEYYKHIIRMPEEERELLLALRLTYRLADLDGPFTIIVGTP--DGFIVIRDRIKLRPAVVAET 214 (249)
T ss_pred HHHHHHHHHHHhCC-ChHHHHHHHhcCCHhHHHHHHHHHHHhCcccCCCCEEEEEEeC--CeEEEEecCCCCccEEEEEE
Confidence 99999875432 33 2222 57899999999999996 45899999999999999999
Q ss_pred CCeEEEEechhHhHhhc
Q 029384 162 LPLLMMLTCSKVLAASH 178 (194)
Q Consensus 162 ~~~l~FaSEiKal~a~~ 178 (194)
++.++||||.++|.+.+
T Consensus 215 ~~~~~~ASE~~al~~~~ 231 (249)
T cd01907 215 DDYVAIASEECAIREIP 231 (249)
T ss_pred CCEEEEEEcHHHHhccC
Confidence 99999999999999764
No 19
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=99.90 E-value=3.6e-23 Score=193.63 Aligned_cols=128 Identities=13% Similarity=0.100 Sum_probs=100.7
Q ss_pred EEeCCceeEEEecCCCCCcccccc--ccCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhhhcCCCC
Q 029384 47 VQVGDNVTLAYTHQNESPLRQRSF--AVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYP 120 (194)
Q Consensus 47 v~~g~~~~lays~~~~~~~~~~~f--~~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~drGPyp 120 (194)
+-+|| .++|-.-.....-.||++ +..+++++++||+|||+.+||++| |+ .+++||+|||+++|.+++. +.+.
T Consensus 77 ~gIGH-~RysT~G~~~~~n~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~Li~~~~~-~~~~ 154 (475)
T PRK07631 77 AAIGH-VRYATAGGGGYENVQPLLFRSQTGSLALAHNGNLVNATQLKLQLENQGSIFQTTSDTEVLAHLIKRSGA-PTLK 154 (475)
T ss_pred EEEEE-eeccccCCCCcCCcCCeEeEcCCCCEEEEEEEEEECHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcC-CCHH
Confidence 55566 555544332223345553 456789999999999999999998 65 4899999999999998652 1110
Q ss_pred --hhhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhhc
Q 029384 121 --PNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASH 178 (194)
Q Consensus 121 --~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~ 178 (194)
..+++++|+|+|||++||. ++++++|||+|+|||||...++.++||||.+||-..+
T Consensus 155 eai~~~~~~l~G~yalvi~~~--~~l~aaRDp~GirPL~~G~~~~~~~~ASE~~Al~~~g 212 (475)
T PRK07631 155 EQIKNALSMLKGAYAFLLMTE--TELYVALDPNGLRPLSIGRLGDAYVVASETCAFDVIG 212 (475)
T ss_pred HHHHHHHHhCCCCceeeEEeC--CEEEEEECCCCCCCEEEEEeCCEEEEEeChHHHhhcC
Confidence 0258999999999999996 6799999999999999999999999999999996554
No 20
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=99.89 E-value=9e-23 Score=190.85 Aligned_cols=131 Identities=14% Similarity=0.039 Sum_probs=103.5
Q ss_pred EEEeCCceeEEEecCCCCCcccccc--ccCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhh-hcCC
Q 029384 46 SVQVGDNVTLAYTHQNESPLRQRSF--AVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALR-DRAP 118 (194)
Q Consensus 46 sv~~g~~~~lays~~~~~~~~~~~f--~~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~-drGP 118 (194)
.+.+|| .++|..........||+. +..+++.+++||+|||+.+||++| |+ .+|+||+|||+++|.... .+|.
T Consensus 83 ~~gIGH-~RyaT~G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVi~~li~~~~~~~~~ 161 (474)
T PRK06388 83 IVGVGH-TRYSTAGSKGVENAGPFVINSSLGYIGISHNGEIVNADELREEMKKEGYIFQSDSDTEVMLAELSRNISKYGL 161 (474)
T ss_pred cEEEee-eeeeecCCCCccCCCCeEeecCCCCEEEEECceECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHHHhcCCH
Confidence 467788 778776543323334443 346789999999999999999998 65 489999999999996432 2221
Q ss_pred C-ChhhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhhcc
Q 029384 119 Y-PPNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASHL 179 (194)
Q Consensus 119 y-p~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~~ 179 (194)
- ...+++++|+|+|||+|.++ ++|+++|||+|+|||||...++.++||||.+||...+.
T Consensus 162 ~eai~~~~~~l~G~ya~vi~~~--~~l~a~RDp~GiRPL~~G~~~~~~~~ASE~~Al~~~~~ 221 (474)
T PRK06388 162 KEGFERSMERLRGAYACALMIN--DRLYAIRDPNGIRPLVLGKNFDGYIIASESCAIDALSG 221 (474)
T ss_pred HHHHHHHHHhccCceeEEEEEC--CEEEEEECCCCCCceEEEecCCEEEEEEChHHHHhccC
Confidence 0 01358999999999999976 78999999999999999999889999999999998654
No 21
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=99.89 E-value=5.9e-23 Score=193.53 Aligned_cols=130 Identities=13% Similarity=0.108 Sum_probs=106.3
Q ss_pred EEEeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhhhcCCCCh
Q 029384 46 SVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYPP 121 (194)
Q Consensus 46 sv~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~drGPyp~ 121 (194)
.+-+|| .++|..........||+....+++.+++||+|||+.+||+++ |+ .+++||+|+|+++|..+.+.|+-+.
T Consensus 66 ~~~igH-~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~l~~~g~~~~~~sDsEvi~~l~~~~~~~g~~~~ 144 (604)
T PRK00331 66 TTGIGH-TRWATHGKPTERNAHPHTDCSGRIAVVHNGIIENYAELKEELLAKGHVFKSETDTEVIAHLIEEELKEGGDLL 144 (604)
T ss_pred cEEEEE-EecCCCCCCccccCCccccCCCCEEEEEeEEEcCHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHhhCCCHH
Confidence 455666 666665433334566776667899999999999999999998 55 3899999999999998765552111
Q ss_pred ---hhhhcccccceEEEEEECCC-CeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhhcc
Q 029384 122 ---NHVVGHLSGYFAFIVYDKST-STLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASHL 179 (194)
Q Consensus 122 ---~~~l~~L~GmFAFvIyD~~~-~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~~ 179 (194)
.+++++|+|+|||+|||+.+ +++++|||+ |||||...++.++||||+|+|...+-
T Consensus 145 ~a~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~PL~~g~~~~~~~~aSE~~al~~~~~ 203 (604)
T PRK00331 145 EAVRKALKRLEGAYALAVIDKDEPDTIVAARNG---SPLVIGLGEGENFLASDALALLPYTR 203 (604)
T ss_pred HHHHHHHHhccCeeEEEEEecCCCCEEEEEECC---CceEEEEcCCeEEEEECHHHHHHhcC
Confidence 36899999999999999998 999999995 99999999999999999999998763
No 22
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=99.89 E-value=1.3e-23 Score=195.75 Aligned_cols=120 Identities=15% Similarity=0.175 Sum_probs=106.4
Q ss_pred EeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHhC-CC-CcCchHHHHHHHHHHhhhcCCCChhhhh
Q 029384 48 QVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG-LA-KSANEVILVIEAYKALRDRAPYPPNHVV 125 (194)
Q Consensus 48 ~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~G-~~-kt~sdtevileaY~~~~drGPyp~~~~l 125 (194)
.||+ -+||+... .+--||+.+++..++|..||||||+++||+..- +. +|.||+|+||++|++.| | .|+.
T Consensus 44 ~l~h-eRLAIvdp--~sg~QPi~~~~~~~~~~vNGEIYNH~~Lr~~~~~~~~~T~sDcEvIi~lY~khg--~----~~~~ 114 (543)
T KOG0571|consen 44 ILGH-ERLAIVDP--TSGAQPIVGEDGTYVVTVNGEIYNHKKLREHCKDFEFQTGSDCEVIIHLYEKHG--G----EQAI 114 (543)
T ss_pred cccc-cceeEecC--CcCCcccccCCCcEEEEECceeccHHHHHHHhhhcccccCCCceeeeehHhhcC--c----hhHH
Confidence 6777 67888775 445677999999999999999999999999974 54 88999999999999865 2 6899
Q ss_pred cccccceEEEEEECCCCeEEEEeccCCceeEEEEe-eCCeEEEEechhHhHh
Q 029384 126 GHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMD-MLPLLMMLTCSKVLAA 176 (194)
Q Consensus 126 ~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~-~~~~l~FaSEiKal~a 176 (194)
+.|+|||||+++|.+.+++.+|||+.|++||||.. .+++++||||+|+|-.
T Consensus 115 ~~LDG~Fafvl~d~~~~kv~~aRDpiGv~~lY~g~~~~gs~~~aSe~k~l~d 166 (543)
T KOG0571|consen 115 CMLDGVFAFVLLDTKDDKVVAARDPIGVTPLYYGWDSDGSVYFASEMKCLED 166 (543)
T ss_pred HHhhhheEEEEecCCCCeEEeccCCcCceeeEEEecCCCcEEEeeehhhhhh
Confidence 99999999999999999999999999999999976 6778999999999864
No 23
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.89 E-value=4.6e-23 Score=192.83 Aligned_cols=127 Identities=17% Similarity=0.163 Sum_probs=101.6
Q ss_pred EEeCCceeEEEecCCCCCccccccc--cCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhhhcCCCC
Q 029384 47 VQVGDNVTLAYTHQNESPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYP 120 (194)
Q Consensus 47 v~~g~~~~lays~~~~~~~~~~~f~--~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~drGPyp 120 (194)
+-+|| .++|........-.||+.. ..+++++++||+|||+.+||+++ |+ .+++||+|||+++|..++. +.+.
T Consensus 88 ~~IGH-~R~sT~G~~~~~n~QP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDSEvi~~Li~~~~~-~~~~ 165 (479)
T PRK09123 88 RAIGH-VRYSTTGETILRNVQPLFAELEFGGLAIAHNGNLTNALTLRRELIRRGAIFQSTSDTEVILHLIARSRK-ASFL 165 (479)
T ss_pred EEEEE-EecccCCCCCcCCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcc-CCHH
Confidence 45666 6666554333334566654 36789999999999999999998 55 4899999999999987541 1111
Q ss_pred --hhhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhh
Q 029384 121 --PNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAAS 177 (194)
Q Consensus 121 --~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~ 177 (194)
..+++++|+|+|||+|||. ++++++||++|+|||||...++.++||||.+||...
T Consensus 166 eai~~~~~~L~G~ya~vil~~--~~l~a~RD~~GirPL~~g~~~~~~~~ASE~~Al~~~ 222 (479)
T PRK09123 166 DRFIDALRQVEGAYSLVALTN--TKLIGARDPLGIRPLVLGELDGSPILASETCALDII 222 (479)
T ss_pred HHHHHHHHHhhcceeEEEEEC--CEEEEEECCCCCCceEEEEECCEEEEEECchHHhcc
Confidence 0368999999999999997 689999999999999999998999999999999753
No 24
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=99.89 E-value=8.5e-23 Score=192.56 Aligned_cols=129 Identities=13% Similarity=0.096 Sum_probs=105.0
Q ss_pred EEEeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHh---CCC-CcCchHHHHHHHHHHhhhcCCCCh
Q 029384 46 SVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPP 121 (194)
Q Consensus 46 sv~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~~-kt~sdtevileaY~~~~drGPyp~ 121 (194)
.+-+|| .++|........-.||+....+++.+++||+||||.+||+++ |+. +++||+|||+++|..+++.|+=+.
T Consensus 65 ~~~igH-~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~tDsEvi~~l~~~~~~~~~~~~ 143 (607)
T TIGR01135 65 GVGIGH-TRWATHGKPTEENAHPHTDEGGRIAVVHNGIIENYAELREELEARGHVFVSDTDTEVIAHLIEEYLREGGDLL 143 (607)
T ss_pred cEEEEE-eeccCCCCCCccCCCCcCcCCCCEEEEEecccCCHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHhcCCCHH
Confidence 456676 667665433333456666667889999999999999999998 553 899999999999999875442111
Q ss_pred ---hhhhcccccceEEEEEECCC-CeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhhc
Q 029384 122 ---NHVVGHLSGYFAFIVYDKST-STLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASH 178 (194)
Q Consensus 122 ---~~~l~~L~GmFAFvIyD~~~-~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~ 178 (194)
.+++++|+|||||+|||+.+ ++++++||. |||||...++.++||||+|+|...+
T Consensus 144 ~ai~~~~~~l~G~~a~~i~~~~~~~~l~~~Rd~---~PL~~~~~~~~~~~aSE~~al~~~~ 201 (607)
T TIGR01135 144 EAVQKALKQLRGAYALAVLHADHPETLVAARSG---SPLIVGLGDGENFVASDVTALLPVT 201 (607)
T ss_pred HHHHHHHHHhcCceEEEEEecCCCCEEEEEECC---CceEEEECCCeEEEEEChHHHHhhC
Confidence 16899999999999999887 469999995 9999999999999999999999876
No 25
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=99.89 E-value=1.9e-22 Score=172.19 Aligned_cols=128 Identities=13% Similarity=0.117 Sum_probs=101.4
Q ss_pred EEeCCceeEEEecCCCCCccccccc--cCCcEEEEEceeecCHHHHHHHh---CCC-CcCchHHHHHHHHHHhhhcCCC-
Q 029384 47 VQVGDNVTLAYTHQNESPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPY- 119 (194)
Q Consensus 47 v~~g~~~~lays~~~~~~~~~~~f~--~~~~i~~vFNGeIyN~~eLr~q~---G~~-kt~sdtevileaY~~~~drGPy- 119 (194)
+-+|| .++|..........||+.. ..+++++++||+|||+.+||+++ |.. ++.||+|+|+++|..+++.+..
T Consensus 66 ~~lgH-~R~at~g~~~~~n~qPf~~~~~~~~~~~~hNG~I~n~~~L~~~l~~~g~~~~~~tDSEvi~~l~~~~~~~~~~~ 144 (252)
T cd00715 66 IAIGH-VRYSTAGSSSLENAQPFVVNSPLGGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEVILHLIARSLAKDDLF 144 (252)
T ss_pred EEEEE-EEcccCCCCCccCCCCcEEecCCCcEEEEEEEEECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHhhccCCHH
Confidence 55666 5566554333334555554 35789999999999999999997 333 7899999999999987642110
Q ss_pred Ch-hhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeC-CeEEEEechhHhHhh
Q 029384 120 PP-NHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDML-PLLMMLTCSKVLAAS 177 (194)
Q Consensus 120 p~-~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~-~~l~FaSEiKal~a~ 177 (194)
-+ .+++++|+|+|||++||. ++++++||++|++||||+..+ +.++||||.++|...
T Consensus 145 ~al~~~~~~l~G~~a~~~~d~--~~l~~~RD~~G~~PL~~~~~~~~~~~vASE~~al~~~ 202 (252)
T cd00715 145 EAIIDALERVKGAYSLVIMTA--DGLIAVRDPHGIRPLVLGKLEGDGYVVASESCALDII 202 (252)
T ss_pred HHHHHHHHhccCceEEEEEEC--CEEEEEECCCCCCCeEEEEeCCCeEEEEECHHHhccc
Confidence 00 259999999999999998 999999999999999999887 899999999999864
No 26
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=99.88 E-value=2.7e-22 Score=189.18 Aligned_cols=129 Identities=16% Similarity=0.125 Sum_probs=101.7
Q ss_pred EEeCCceeEEEecCCCCCcccccccc---CCcEEEEEceeecCHHHHHHHh---CC------CCcCchHHHHHHHHHHhh
Q 029384 47 VQVGDNVTLAYTHQNESPLRQRSFAV---KDEIFCLFEGALDNLGSLRQQY---GL------AKSANEVILVIEAYKALR 114 (194)
Q Consensus 47 v~~g~~~~lays~~~~~~~~~~~f~~---~~~i~~vFNGeIyN~~eLr~q~---G~------~kt~sdtevileaY~~~~ 114 (194)
+-+|| .+++..-.......||+... .+++.+++||+|||+.+||+++ |. .+++||+|+|++++..++
T Consensus 90 i~IGH-vR~sT~G~~~~~naQP~~~~~~~~g~ialvHNG~I~N~~eLr~~L~~~G~~~~~~~f~s~sDSEVI~~Li~~~~ 168 (510)
T PRK07847 90 VAIGH-CRYSTTGASTWENAQPTFRATAAGGGVALGHNGNLVNTAELAARARDRGLIRGRDPAGATTDTDLVTALLAHGA 168 (510)
T ss_pred EEEEe-ccCCcCCCCcccCCCCcCcccCCCCCEEEEEEEEEeCHHHHHHHHHhcCCccccCCCCCCCHHHHHHHHHHHhc
Confidence 44666 55544332222335555542 6899999999999999999998 54 489999999999998876
Q ss_pred hcCCCC--hhhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhhc
Q 029384 115 DRAPYP--PNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASH 178 (194)
Q Consensus 115 drGPyp--~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~ 178 (194)
+.|.+. ..+++++|+|+|||+|||. ++++++||++|+|||||...++.++||||.+||...+
T Consensus 169 ~~~~~~eai~~~~~~l~G~yA~vi~d~--~~L~aaRDp~GirPL~~g~~~~~~~vASE~~AL~~~g 232 (510)
T PRK07847 169 ADSTLEQAALELLPTVRGAFCLVFMDE--HTLYAARDPQGVRPLVLGRLERGWVVASETAALDIVG 232 (510)
T ss_pred cCCCHHHHHHHHHHHhhhheEEEEEEC--CEEEEEECCCCCCCcEEEEECCeEEEEechHHHhccC
Confidence 333211 0258999999999999996 6899999999999999999999999999999998764
No 27
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.87 E-value=6.9e-22 Score=185.39 Aligned_cols=129 Identities=13% Similarity=0.127 Sum_probs=100.4
Q ss_pred EEEeCCceeEEEecCCCCCccccccc--cCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhhhcCCC
Q 029384 46 SVQVGDNVTLAYTHQNESPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPY 119 (194)
Q Consensus 46 sv~~g~~~~lays~~~~~~~~~~~f~--~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~drGPy 119 (194)
.+.+|| .++|..-....-..||+.. ..+++.+++||+|||+.+||+++ |+ .+|+||+|||++++..+.. +.+
T Consensus 77 ~~~IGH-~RysT~G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVI~~Li~~~~~-~~~ 154 (484)
T PRK07272 77 QAAIGH-VRYATAGSASIENIQPFLFHFHDMQFGLAHNGNLTNAVSLRKELEKQGAIFHSSSDTEILMHLIRRSHN-PTF 154 (484)
T ss_pred cEEEEE-eeccccCCCCcCCCCCEEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHcC-CCH
Confidence 355677 6665543322233555654 46789999999999999999998 65 4899999999999987542 111
Q ss_pred C--hhhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEee-CCeEEEEechhHhHhhc
Q 029384 120 P--PNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDM-LPLLMMLTCSKVLAASH 178 (194)
Q Consensus 120 p--~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~-~~~l~FaSEiKal~a~~ 178 (194)
. ..+++++|+|+|||+|.|. ++++++|||+|+|||||... ++.++||||.+||...+
T Consensus 155 ~eai~~~~~~l~G~ya~~i~~~--~~l~a~RDp~GirPL~~G~~~~~~~~~ASE~~Al~~ig 214 (484)
T PRK07272 155 MGKLKEALNTVKGGFAYLLLTE--DKLIAALDPNGFRPLSIGKMKNGAYVVASETCAFDVVG 214 (484)
T ss_pred HHHHHHHHHHccCceeEEEEEC--CEEEEEECCCCCCcEEEEEecCCEEEEEECHHHHhccC
Confidence 0 1368999999999999996 68999999999999999875 55699999999997655
No 28
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=99.87 E-value=8.7e-22 Score=185.42 Aligned_cols=129 Identities=13% Similarity=0.096 Sum_probs=99.8
Q ss_pred EEeCCceeEEEecCCCCCcccccccc--CCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhhhcC-CC
Q 029384 47 VQVGDNVTLAYTHQNESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRA-PY 119 (194)
Q Consensus 47 v~~g~~~~lays~~~~~~~~~~~f~~--~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~drG-Py 119 (194)
+-+|| .++|..-.......||+... .+++++++||+|||+.+||++| |+ .+++||+|||+++|....+.| .+
T Consensus 100 i~IGH-vRysT~G~~~~~naQP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~li~~~~~~~~~~ 178 (500)
T PRK07349 100 LAVGH-TRYSTTGSSRKANAQPAVLETRLGPLALAHNGNLVNTVELREELLARGCELTTTTDSEMIAFAIAQAVDAGKDW 178 (500)
T ss_pred EEEEE-eecccCCCCCccCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHHhcCCCH
Confidence 55666 66665443322345666543 4789999999999999999998 65 389999999999998644333 11
Q ss_pred C--hhhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEee----CCeEEEEechhHhHhhc
Q 029384 120 P--PNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDM----LPLLMMLTCSKVLAASH 178 (194)
Q Consensus 120 p--~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~----~~~l~FaSEiKal~a~~ 178 (194)
. ..+++++|+|+|||+|.|. ++++++||++|+|||||... ++.++||||.+||-..+
T Consensus 179 ~eai~~~~~~l~G~ya~vi~~~--~~l~aaRDp~GiRPL~~G~~~~~~~~~~~~ASE~~Al~~lg 241 (500)
T PRK07349 179 LEAAISAFQRCQGAFSLVIGTP--EGLMGVRDPNGIRPLVIGTLGEGGPGRYVLASETCALDIIG 241 (500)
T ss_pred HHHHHHHHHHhhhhEEEEEEeC--CEEEEEECCCCCCCeEEEecccCCCCeEEEEeccchhhhcC
Confidence 1 1368899999999999875 67999999999999999875 45799999999996544
No 29
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=99.87 E-value=1.5e-21 Score=182.45 Aligned_cols=128 Identities=13% Similarity=0.124 Sum_probs=99.9
Q ss_pred EEeCCceeEEEecCCCCCccccccc--cCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhhhcCCC-
Q 029384 47 VQVGDNVTLAYTHQNESPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPY- 119 (194)
Q Consensus 47 v~~g~~~~lays~~~~~~~~~~~f~--~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~drGPy- 119 (194)
+-+|| .+.|-.-.......||+.. ..+++++++||+|||+.+||++| |. .+++||+|||+++|..+.. +..
T Consensus 77 ~~IGH-vRyaT~G~~~~~naqP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvI~~Li~~~~~-~~~~ 154 (471)
T PRK06781 77 SAIGH-VRYATAGGSEVANVQPLLFRFSDHSMALAHNGNLINAKMLRRELEAEGSIFQTSSDTEVLLHLIKRSTK-DSLI 154 (471)
T ss_pred EEEEE-eEcccCCCCCcCCCCCeEEecCCCCEEEEEEEEEcCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcC-CCHH
Confidence 44555 5554443322233455532 36789999999999999999998 54 4899999999999987642 110
Q ss_pred -ChhhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhhc
Q 029384 120 -PPNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASH 178 (194)
Q Consensus 120 -p~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~ 178 (194)
-..+++++|+|+|||+++|. ++++++||++|+|||||...++.++||||.+||...|
T Consensus 155 eai~~~~~~l~G~ya~vi~~~--~~l~aaRD~~GirPL~~g~~~~~~~~ASE~~Al~~~g 212 (471)
T PRK06781 155 ESVKEALNKVKGAFAYLLLTG--NEMIVALDPNGFRPLSIGKMGDAYVVASETCAFDVVG 212 (471)
T ss_pred HHHHHHHHhCCCcEEEEEEEC--CEEEEEECCCCCCCeEEEEECCEEEEEECchHhhhcC
Confidence 01357899999999999996 7899999999999999999999999999999998654
No 30
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.87 E-value=2e-21 Score=180.41 Aligned_cols=127 Identities=13% Similarity=0.072 Sum_probs=95.9
Q ss_pred EEEeCCceeEEEecCCCCCcccccccc--CCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHH-hhhcCC
Q 029384 46 SVQVGDNVTLAYTHQNESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKA-LRDRAP 118 (194)
Q Consensus 46 sv~~g~~~~lays~~~~~~~~~~~f~~--~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~-~~drGP 118 (194)
.+.+|| .++|..... .-.||+... .+++.+++||+|||+.+||++| |+ .+|+||||||++++.. +.++|.
T Consensus 67 ~~~IGH-~R~sT~G~~--~~~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVI~~li~~~~~~~~~ 143 (442)
T PRK08341 67 NLAIGH-VRYSTSGSL--SEVQPLEVECCGYKIAIAHNGTLTNFLPLRRKYESRGVKFRSSVDTELIGISFLWHYSETGD 143 (442)
T ss_pred CEEEEE-eeccccCCC--cCcCCEEeecCCCCEEEEEEEEEECHHHHHHHHHHcCCccCCCCHHHHHHHHHHHHHHhcCC
Confidence 466777 666665432 224444332 4789999999999999999998 65 4899999999776432 223342
Q ss_pred C--ChhhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhhc
Q 029384 119 Y--PPNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASH 178 (194)
Q Consensus 119 y--p~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~ 178 (194)
. -..+++++|+|+|||+|.+. ++++++||++|+|||||... +.++||||.+||...+
T Consensus 144 ~~~ai~~~~~~l~G~yal~i~~~--~~l~a~RD~~GirPL~~G~~-~~~~~ASE~~Al~~~~ 202 (442)
T PRK08341 144 EFEAMREVFNEVKGAYSVAILFD--GKIIVARDPVGFRPLSYGEG-DGHYFASEDSALRMFV 202 (442)
T ss_pred HHHHHHHHHHhccCceEEEEEEC--CEEEEEEcCCCceEEEEEEC-CEEEEEeCcHHHHhhC
Confidence 1 01247899999999999986 78999999999999999984 5589999999998654
No 31
>PLN02440 amidophosphoribosyltransferase
Probab=99.86 E-value=4.1e-21 Score=179.42 Aligned_cols=129 Identities=12% Similarity=0.104 Sum_probs=98.3
Q ss_pred EEeCCceeEEEecCCCCCccccccc--cCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhhhcCCC-
Q 029384 47 VQVGDNVTLAYTHQNESPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPY- 119 (194)
Q Consensus 47 v~~g~~~~lays~~~~~~~~~~~f~--~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~drGPy- 119 (194)
+-+|| .+.+-+-.....-.||+.. ..+++++++||+|+|+.+||++| |. .+++||+|+|+++|..+....+.
T Consensus 67 ~~IGH-vRysT~G~~~~~n~QPf~~~~~~g~~~lahNG~I~N~~eLr~~L~~~g~~f~s~sDsEvi~~li~~~~~~~~~~ 145 (479)
T PLN02440 67 IAIGH-VRYSTAGASSLKNVQPFVANYRFGSIGVAHNGNLVNYEELRAKLEENGSIFNTSSDTEVLLHLIAISKARPFFS 145 (479)
T ss_pred EEEEE-EeccccCCCCccCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhhhhHHH
Confidence 45666 5554443322334555553 34789999999999999999998 44 38999999999999865311100
Q ss_pred ChhhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEee-CCeEEEEechhHhHhhc
Q 029384 120 PPNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDM-LPLLMMLTCSKVLAASH 178 (194)
Q Consensus 120 p~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~-~~~l~FaSEiKal~a~~ 178 (194)
-..+++++|+|+|||+|||+ ++++++||++|+|||||... ++.++||||.+||...+
T Consensus 146 a~~~~~~~l~G~fa~vi~~~--~~l~a~RD~~G~RPL~~g~~~~~~~~vASE~~al~~~g 203 (479)
T PLN02440 146 RIVDACEKLKGAYSMVFLTE--DKLVAVRDPHGFRPLVMGRRSNGAVVFASETCALDLIG 203 (479)
T ss_pred HHHHHHHHhccceeeeEEEC--CEEEEEECCCCCCceEEEEeCCCEEEEEECchHHhccC
Confidence 01479999999999999996 46999999999999999865 56799999999998764
No 32
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.86 E-value=3.2e-21 Score=184.02 Aligned_cols=129 Identities=12% Similarity=0.120 Sum_probs=103.2
Q ss_pred EEEeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHh---CCC-CcCchHHHHHHHHHHhhhcCCCC-
Q 029384 46 SVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYP- 120 (194)
Q Consensus 46 sv~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~~-kt~sdtevileaY~~~~drGPyp- 120 (194)
.+.+|| .++|..-.....-.||+....+++.+++||+|||+.+||+++ |+. +++||+|||+++|....++|.-+
T Consensus 96 ~~~igH-~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~f~s~tDsEvi~~li~~~~~~g~~~~ 174 (640)
T PTZ00295 96 TIGIAH-TRWATHGGKTDENAHPHCDYKKRIALVHNGTIENYVELKSELIAKGIKFRSETDSEVIANLIGLELDQGEDFQ 174 (640)
T ss_pred cEEEEE-eccccCCCCCcCCCCCCCCCCCCEEEEEEEEEcCHHHHHHHHHHCCCcccCCChHHHHHHHHHHHHhcCCCHH
Confidence 356777 777665432223355665556899999999999999999997 663 89999999999987554454211
Q ss_pred --hhhhhcccccceEEEEEECC-CCeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhhc
Q 029384 121 --PNHVVGHLSGYFAFIVYDKS-TSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASH 178 (194)
Q Consensus 121 --~~~~l~~L~GmFAFvIyD~~-~~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~ 178 (194)
..+++++|+|+|||++||+. .++++++||+ |||||...++.++||||.++|...+
T Consensus 175 ~a~~~~~~~l~G~~a~~~~~~~~~~~l~~~Rd~---~PL~~g~~~~~~~~aSE~~al~~~~ 232 (640)
T PTZ00295 175 EAVKSAISRLQGTWGLCIIHKDNPDSLIVARNG---SPLLVGIGDDSIYVASEPSAFAKYT 232 (640)
T ss_pred HHHHHHHHHhhhhceEEEEEeCCCCEEEEEECC---CceEEEEcCceEEEEechHHHHhhC
Confidence 12689999999999999987 5899999997 9999999988999999999998764
No 33
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.85 E-value=4.6e-21 Score=178.72 Aligned_cols=129 Identities=14% Similarity=0.103 Sum_probs=101.1
Q ss_pred EEeCCceeEEEecCCCCCccccccc--cCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhhhcCCCC
Q 029384 47 VQVGDNVTLAYTHQNESPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYP 120 (194)
Q Consensus 47 v~~g~~~~lays~~~~~~~~~~~f~--~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~drGPyp 120 (194)
+-+|| .++|..-.......||... ..+++.+++||+|+|+.+||+++ |+ .+++||+|+|++++.++...++--
T Consensus 82 ~~iGH-vR~sT~G~~~~~n~qPf~~~~~~g~~alvhNG~I~N~~eLr~~L~~~g~~f~s~sDSEvi~~li~~~~~~~~~~ 160 (469)
T PRK05793 82 SAIGH-VRYSTTGASDLDNAQPLVANYKLGSIAIAHNGNLVNADVIRELLEDGGRIFQTSIDSEVILNLIARSAKKGLEK 160 (469)
T ss_pred EEEEE-eecccCCCCCCCCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHccCCHHH
Confidence 55666 5555443222233555554 36889999999999999999997 55 489999999999998765321100
Q ss_pred -hhhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhhc
Q 029384 121 -PNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASH 178 (194)
Q Consensus 121 -~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~ 178 (194)
..+++++|+|+|||+++|. ++++++||++|+|||||...++.++||||.++|...+
T Consensus 161 ai~~~~~~l~G~ya~vi~~~--~~l~a~RD~~GirPL~~g~~~~~~~vASE~~al~~~g 217 (469)
T PRK05793 161 ALVDAIQAIKGSYALVILTE--DKLIGVRDPHGIRPLCLGKLGDDYILSSESCALDTIG 217 (469)
T ss_pred HHHHHHHHhhhhceEEEEEC--CEEEEEECCCCCCCcEEEEECCEEEEEEChHHHhhcC
Confidence 0268999999999999986 7899999999999999999999999999999998654
No 34
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=99.85 E-value=9.1e-21 Score=177.82 Aligned_cols=130 Identities=16% Similarity=0.120 Sum_probs=97.1
Q ss_pred EeCCceeEEEecCCCCCcccccc-ccCCcEEEEEceeecCHHHHHHHh----CC-CCcCchHHHHHHHHHHhhhc--C--
Q 029384 48 QVGDNVTLAYTHQNESPLRQRSF-AVKDEIFCLFEGALDNLGSLRQQY----GL-AKSANEVILVIEAYKALRDR--A-- 117 (194)
Q Consensus 48 ~~g~~~~lays~~~~~~~~~~~f-~~~~~i~~vFNGeIyN~~eLr~q~----G~-~kt~sdtevileaY~~~~dr--G-- 117 (194)
-+|| .+.|.+-.......||+. ...+++.+++||+|+|+.+||+++ |. .+++||+|||+++|.++... |
T Consensus 68 ~IGH-vRysT~G~~~~~n~QP~~~~~~~g~alahNG~I~N~~eLr~~L~~~~~~~f~s~sDsEvi~~li~~~l~~~~g~~ 146 (501)
T PRK09246 68 GIGH-VRYPTAGSSSSAEAQPFYVNSPYGITLAHNGNLTNAEELRKELFEKDRRHINTTSDSEVLLNVFAHELQKFRGLP 146 (501)
T ss_pred EEEE-EcCCcCCCCCcccCCCEEEeCCCCEEEEEeEEEcCHHHHHHHHHhcCCCeeecCCHHHHHHHHHHHHHHhccccc
Confidence 4555 444444332223455554 344569999999999999999987 22 48999999999999876432 1
Q ss_pred --CCC-h---hhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEee----CCeEEEEechhHhHhhcc
Q 029384 118 --PYP-P---NHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDM----LPLLMMLTCSKVLAASHL 179 (194)
Q Consensus 118 --Pyp-~---~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~----~~~l~FaSEiKal~a~~~ 179 (194)
+.. . .+++++|+|+|||++|.. .++++++||++|+|||||... ++.++||||.+||...+.
T Consensus 147 ~~~~~l~eai~~~~~~l~Gays~v~~~~-~~~l~a~RDp~GirPL~~g~~~~~~~~~~~~ASE~~Al~~~g~ 217 (501)
T PRK09246 147 LTPEDIFAAVAAVHRRVRGAYAVVAMII-GHGLVAFRDPHGIRPLVLGKRETEGGTEYMVASESVALDALGF 217 (501)
T ss_pred cCccCHHHHHHHHHHhcccceeeEEEec-CCcEEEEECCCCCCCeEEEeecCCCCCEEEEEECHHHHHhCCc
Confidence 100 0 158999999999999843 456999999999999999986 357999999999998654
No 35
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.83 E-value=4.6e-20 Score=170.69 Aligned_cols=129 Identities=16% Similarity=0.084 Sum_probs=99.1
Q ss_pred EEeCCceeEEEecCCCCCccccccc-cCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhhhcCCCC-
Q 029384 47 VQVGDNVTLAYTHQNESPLRQRSFA-VKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYP- 120 (194)
Q Consensus 47 v~~g~~~~lays~~~~~~~~~~~f~-~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~drGPyp- 120 (194)
+-+|| .+++-+-.....-.||+.. ..+++++++||+|+|+.+||+++ |. .++.||+|+|+++|..++..+.-.
T Consensus 67 ~~IgH-vR~aT~G~~~~~n~QPf~~~~~~g~alahNG~I~N~~eLr~~L~~~g~~f~~~sDSEvi~~li~~~~~~~~~~~ 145 (442)
T TIGR01134 67 VGIGH-VRYSTAGSSSLSNAQPFVVNSPGGIALAHNGNLVNAEELREELEEEGRIFNTTSDSEVLLHLLARERLEEDDLF 145 (442)
T ss_pred EEEEE-EEecCCCCCCccCCCCEEEeCCCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhcccCCHH
Confidence 55666 5555443322233555553 33459999999999999999997 44 388999999999999865211000
Q ss_pred --hhhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhhc
Q 029384 121 --PNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASH 178 (194)
Q Consensus 121 --~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~ 178 (194)
..+++++|+|+|||++||. ++++++||++|+|||||...++.++||||.++|...+
T Consensus 146 ~ai~~~~~~l~G~falvi~~~--~~L~a~RD~~G~rPL~~g~~~~~~~~ASE~~al~~~g 203 (442)
T TIGR01134 146 EAIARVLKRVRGAYALVIMIG--DGLIAVRDPHGIRPLVLGKRGDGYVVASESCALDILG 203 (442)
T ss_pred HHHHHHHHHhCccceEEEEEC--CEEEEEECCCCCCCcEEEEeCCEEEEEeCchHhcccC
Confidence 0268999999999999974 6899999999999999999999999999999998543
No 36
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.78 E-value=1.4e-18 Score=167.80 Aligned_cols=128 Identities=11% Similarity=0.022 Sum_probs=98.6
Q ss_pred EEEeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHH-hhhcCCCC
Q 029384 46 SVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKA-LRDRAPYP 120 (194)
Q Consensus 46 sv~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~-~~drGPyp 120 (194)
.+.+|| .++|.......--.||+....+++++|+||+||||.+||++| |+ .+|+||||||+++.+. +.++|...
T Consensus 98 ~~~igH-~R~at~g~~~~~n~qP~~~~~~~i~vvhNG~I~N~~eLr~~L~~~g~~f~s~tDtEvi~~li~~~~~~~g~~~ 176 (670)
T PTZ00394 98 HVGIAH-TRWATHGGVCERNCHPQQSNNGEFTIVHNGIVTNYMTLKELLKEEGYHFSSDTDTEVISVLSEYLYTRKGIHN 176 (670)
T ss_pred CEEEEE-eeceecCCCCcCCCCCcCCCCCCEEEEECeeEecHHHHHHHHHHcCCEecCCChHHHHHHHHHHHHHhcCCCC
Confidence 366777 777776543223345566667899999999999999999998 66 3999999999976432 22334211
Q ss_pred h----hhhhcccccceEEEEEEC-CCCeEEEEeccCCceeEEEEeeC---------------------CeEEEEechhHh
Q 029384 121 P----NHVVGHLSGYFAFIVYDK-STSTLTNLVRFLFIGESLLMDML---------------------PLLMMLTCSKVL 174 (194)
Q Consensus 121 ~----~~~l~~L~GmFAFvIyD~-~~~~lf~ARDr~GiKPlyY~~~~---------------------~~l~FaSEiKal 174 (194)
. .+++++|+|||||+|.+. ..+++++|||+ +||++...+ +.+++|||++||
T Consensus 177 ~~~a~~~~~~~l~G~ya~~i~~~~~~~~l~~~Rd~---~PL~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aSd~~a~ 253 (670)
T PTZ00394 177 FADLALEVSRMVEGSYALLVKSVYFPGQLAASRKG---SPLMVGIRRTDDRGCVMKLQTYDLTDLSGPLEVFFSSDVNSF 253 (670)
T ss_pred HHHHHHHHHHHccCceEEEEEecCCCCEEEEEEcC---CceEEEeccccccccccccccccccccCCCCcEEEEeChHHH
Confidence 1 269999999999999964 45999999998 999999865 479999999999
Q ss_pred Hhh
Q 029384 175 AAS 177 (194)
Q Consensus 175 ~a~ 177 (194)
+..
T Consensus 254 ~~~ 256 (670)
T PTZ00394 254 AEY 256 (670)
T ss_pred HHh
Confidence 854
No 37
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=99.72 E-value=4e-17 Score=157.80 Aligned_cols=127 Identities=13% Similarity=0.167 Sum_probs=91.9
Q ss_pred EEeCCceeEEEecCCCCCccccccc-cCCcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHH----HHHhhhc-
Q 029384 47 VQVGDNVTLAYTHQNESPLRQRSFA-VKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEA----YKALRDR- 116 (194)
Q Consensus 47 v~~g~~~~lays~~~~~~~~~~~f~-~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevilea----Y~~~~dr- 116 (194)
+.+|| .++|-.-.......||+.. ..+++++|+||+||||.+||++| |+ .+++||+|||+++ |++|+..
T Consensus 88 ~~IGH-~R~at~g~~~~~n~qP~~~~~~~~ialvhNG~I~N~~eLr~~L~~~G~~f~s~tDtEvi~~li~~~~~~~~~~~ 166 (680)
T PLN02981 88 AGIAH-TRWATHGPPAPRNSHPQSSGPGNEFLVVHNGIITNYEVLKETLLRHGFTFESDTDTEVIPKLAKFVFDKLNEEE 166 (680)
T ss_pred EEEEE-cccccCCCCCcCCCCCcccCCCCcEEEEECceEecHHHHHHHHHhCCCeeccCCHHHHHHHHHHHHHHhccccc
Confidence 55666 5665543222222344443 34789999999999999999997 66 3899999999998 5544321
Q ss_pred CCCCh----hhhhcccccceEEEEEECCC-CeEEEEeccCCceeEEEEeeC------------------------CeEEE
Q 029384 117 APYPP----NHVVGHLSGYFAFIVYDKST-STLTNLVRFLFIGESLLMDML------------------------PLLMM 167 (194)
Q Consensus 117 GPyp~----~~~l~~L~GmFAFvIyD~~~-~~lf~ARDr~GiKPlyY~~~~------------------------~~l~F 167 (194)
|++.. .+++++|+|+|||+|.++.. ++++++||. +||++...+ +.+++
T Consensus 167 ~~~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~i~~~r~~---~PL~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (680)
T PLN02981 167 GDVTFSQVVMEVMRQLEGAYALIFKSPHYPNELVACKRG---SPLLLGVKELPEEKNSSAVFTSEGFLTKNRDKPKEFFL 243 (680)
T ss_pred CCCCHHHHHHHHHHhccCccceEEEecCCCCeEEEEecC---CceEEEecCcccccccccccccccccccccccCCcEEE
Confidence 10011 14899999999999999874 999999994 666665542 36899
Q ss_pred EechhHhHhh
Q 029384 168 LTCSKVLAAS 177 (194)
Q Consensus 168 aSEiKal~a~ 177 (194)
|||..||...
T Consensus 244 aSe~~al~~~ 253 (680)
T PLN02981 244 ASDASAVVEH 253 (680)
T ss_pred EeCHHHHHHh
Confidence 9999999874
No 38
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.33 E-value=9e-12 Score=117.07 Aligned_cols=129 Identities=16% Similarity=0.158 Sum_probs=97.5
Q ss_pred EEEeCCceeEEEecCC--CCCccccccccC--CcEEEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHHHHhhhc-
Q 029384 46 SVQVGDNVTLAYTHQN--ESPLRQRSFAVK--DEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDR- 116 (194)
Q Consensus 46 sv~~g~~~~lays~~~--~~~~~~~~f~~~--~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY~~~~dr- 116 (194)
++-+|| .=|+-.. ...-.||++... +.+.++.||.|-|..+||++| |. ..|++|+|||++++..-.++
T Consensus 72 ~~~IGH---vRYsTaG~s~~~naQP~~~~~~~g~ialaHNGnl~N~~~Lr~~l~~~g~~f~t~sDsEvll~l~a~~~~~~ 148 (470)
T COG0034 72 NVGIGH---VRYSTAGSSSIENAQPFYVNSPGGGIALAHNGNLVNAEELRRELEEEGAIFNTTSDSEVLLHLLARELDED 148 (470)
T ss_pred cceeeE---eeecCCCCcccccccceEEecCCCcEEEEecCcccCHHHHHHHHHhcCceecCCccHHHHHHHHHhhcccc
Confidence 456666 4454322 223345565544 369999999999999999998 65 48999999999999864321
Q ss_pred CCC-ChhhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeCCe-EEEEechhHhHhhcc
Q 029384 117 APY-PPNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPL-LMMLTCSKVLAASHL 179 (194)
Q Consensus 117 GPy-p~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~~~-l~FaSEiKal~a~~~ 179 (194)
+.. ...+++++++|-||+++-.+. +|+++||+.|+|||.+...++. .++|||--||-..|.
T Consensus 149 ~~~~a~~~~~~~v~G~ys~v~~~~~--~lia~RDP~GiRPL~iG~~~dG~yvvaSEt~Ald~iGa 211 (470)
T COG0034 149 DIFEAVKEVLRRVKGAYALVALIKD--GLIAVRDPNGIRPLVLGKLGDGFYVVASETCALDILGA 211 (470)
T ss_pred cHHHHHHHHHhhcCCcEEEEEEECC--eEEEEECCCCCccceeeecCCCCEEEEechhhhhcccc
Confidence 110 013577899999999999875 9999999999999999997544 999999999977654
No 39
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=99.25 E-value=1e-10 Score=108.82 Aligned_cols=138 Identities=12% Similarity=0.068 Sum_probs=96.9
Q ss_pred CChHHHHHHhhcCCCC--cEEEEeCCceeEEEecCCCCCccccccccCCcEEEEEceeecCHHHHHHHh-----------
Q 029384 28 TTSTALVDRFLQTNSS--AVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY----------- 94 (194)
Q Consensus 28 ~~~~~l~~~f~~~~~~--a~sv~~g~~~~lays~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~----------- 94 (194)
..++++.+-|....-. .-.+.+|| .+.+-.-.+.-..-||.- +++.||||+|+..+|+.+
T Consensus 182 ~~~~~v~~~Y~DL~~~~~~s~~al~H-~RfSTNT~p~W~~AqPfr------~laHNGEInT~~gnr~~m~are~~~~s~~ 254 (413)
T cd00713 182 LLPEQLGQFYPDLQDPRFESAFALVH-SRFSTNTFPSWPLAQPFR------YLAHNGEINTIRGNRNWMRAREGLLKSPL 254 (413)
T ss_pred ccHHHHHHhccccCcccceEEEEEEE-EecCCCCCCCcccCCcce------eEEEcccccCHHHHHHHHHHhhhhhcCcc
Confidence 5677788888865332 33344455 443221111112334432 489999999999999764
Q ss_pred -C-----C----CCcCchHHHHHHHHHHhhhcCCCChh-----------------------------hhhcccccceEEE
Q 029384 95 -G-----L----AKSANEVILVIEAYKALRDRAPYPPN-----------------------------HVVGHLSGYFAFI 135 (194)
Q Consensus 95 -G-----~----~kt~sdtevileaY~~~~drGPyp~~-----------------------------~~l~~L~GmFAFv 135 (194)
| + ..+.||++++.++.+.+-..|. +.. .+.+.++|.||++
T Consensus 255 ~g~~~~~~~pi~~~~~SDS~~ld~~le~l~~~g~-~l~~A~~mliPeaw~~~~~m~~~~r~fYey~~~~me~~dGp~aiv 333 (413)
T cd00713 255 FGEDLKKLKPIINPGGSDSASLDNVLELLVRSGR-SLPEAMMMLIPEAWQNNPTMDPELRAFYEYHSSLMEPWDGPAAIA 333 (413)
T ss_pred chhhHHhcCCcCCCCCChHHHHHHHHHHHHHcCC-CHHHHHHHhCChhhccCccCCHHHHHHHHHHHHHhccCCCcEEEE
Confidence 1 1 2479999999999876654453 222 2347799999999
Q ss_pred EEECCCCeEEEEeccCCceeEEEEeeCC-eEEEEechhHhH
Q 029384 136 VYDKSTSTLTNLVRFLFIGESLLMDMLP-LLMMLTCSKVLA 175 (194)
Q Consensus 136 IyD~~~~~lf~ARDr~GiKPlyY~~~~~-~l~FaSEiKal~ 175 (194)
+-|. +.+.++|||.|.||++|..+++ .+++|||..+|-
T Consensus 334 ~~dg--~~i~a~rDrnGlRPl~~~~t~d~~~v~ASE~gal~ 372 (413)
T cd00713 334 FTDG--RQVGASLDRNGLRPARYVITKDGLLIMSSEVGVVD 372 (413)
T ss_pred EEeC--CEEEEEeCCCCCcceEEEEECCCEEEEEeCCcccC
Confidence 9986 6899999999999999997665 689999998884
No 40
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=99.23 E-value=5.4e-11 Score=114.88 Aligned_cols=141 Identities=14% Similarity=0.183 Sum_probs=105.1
Q ss_pred ChHHHHHHhhcCCCCcEEEEeCCceeEEEecCCCC-CccccccccCCcEEEEEceeecCHHHHHHHh---CC-CCcCchH
Q 029384 29 TSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNES-PLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEV 103 (194)
Q Consensus 29 ~~~~l~~~f~~~~~~a~sv~~g~~~~lays~~~~~-~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~kt~sdt 103 (194)
+-.++ +.-....|-.-.+-+|| +++| +|+..+ -.-+|.++ +++.+|-||-|.||.+||++| |+ .+|++||
T Consensus 51 kv~~l-~~~~~~~~~~~~~gIgH-TRWA-THG~P~~~NAHPh~~--~~~avVHNGIIeN~~eLr~eL~~~G~~F~S~TDT 125 (597)
T COG0449 51 KISNL-EELLNKEPLIGGVGIAH-TRWA-THGGPTRANAHPHSD--GEFAVVHNGIIENFAELKEELEAKGYVFKSDTDT 125 (597)
T ss_pred CHHHH-HhhhcccccCCceeeee-cccc-CCCCCCcCCCCCCCC--CCEEEEeCchhhCHHHHHHHHHhcCCEEecCCch
Confidence 33444 34444444344566677 6675 443322 22333444 899999999999999999998 77 4999999
Q ss_pred HHHHHHHHHhhhcCCCCh-hhhhcccccceEEEEEECCC-CeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhh
Q 029384 104 ILVIEAYKALRDRAPYPP-NHVVGHLSGYFAFIVYDKST-STLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAAS 177 (194)
Q Consensus 104 evileaY~~~~drGPyp~-~~~l~~L~GmFAFvIyD~~~-~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~ 177 (194)
|||-|+.+..-+.|..-+ ..++++|+|.||+++-|+.. .++++||- -.||+....++..++||-+-|++..
T Consensus 126 EVi~hLi~~~~~~~~~~a~~~~l~~l~Gsyal~~~~~~~p~~i~~ar~---~sPL~iG~g~~e~f~aSD~~a~l~~ 198 (597)
T COG0449 126 EVIAHLLEEIYDTSLLEAVKKVLKRLEGSYALLCTHSDFPDELVAARK---GSPLVIGVGEGENFLASDVSALLNF 198 (597)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhcceeEEEEEecCCCCeEEEEcC---CCCeEEEecCCcceEecChhhhhhh
Confidence 999999976654442111 35899999999999999987 89999986 3699999888888999999999854
No 41
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=99.09 E-value=4.2e-10 Score=106.15 Aligned_cols=88 Identities=18% Similarity=0.152 Sum_probs=73.7
Q ss_pred ccCCcEEEEEceeecCHHHHHHHhCCCCcCchHHHHHHHHHHhhhcCCCChhhhhcccccceEEEEEECCCCeEEEEecc
Q 029384 71 AVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLTNLVRF 150 (194)
Q Consensus 71 ~~~~~i~~vFNGeIyN~~eLr~q~G~~kt~sdtevileaY~~~~drGPyp~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr 150 (194)
.++++++..|||||||-.. +.+..|+..|.+.-..+++.| ...+.++.++|.|||++||.++++||..||+
T Consensus 66 v~d~~~vfl~NGeIyn~~~-------s~~~~d~~~l~~~l~~~~e~~--~Il~~i~~~qGp~~~iyY~~~~~~LyfgRD~ 136 (520)
T KOG0573|consen 66 VEDDRYVFLFNGEIYNGEK-------SDTLFDTDILAEELSNLKESG--DILDIIKSLQGPWAFIYYDVRSDKLYFGRDD 136 (520)
T ss_pred ecccceEEEecceeccCCC-------ccccchHHHHHHHHhcCCccc--cHHHHHHhccCCceEEEEEccCcEEEEeccc
Confidence 4556799999999999543 466778888888888776443 3446788899999999999999999999999
Q ss_pred CCceeEEEEeeCCeEEE
Q 029384 151 LFIGESLLMDMLPLLMM 167 (194)
Q Consensus 151 ~GiKPlyY~~~~~~l~F 167 (194)
+|++.|.|..++..+.+
T Consensus 137 ~GRrSLly~~~~~~f~~ 153 (520)
T KOG0573|consen 137 IGRRSLLYSLDPFNFSL 153 (520)
T ss_pred ccceeeeEEeccCceeE
Confidence 99999999988877666
No 42
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.05 E-value=1.1e-09 Score=94.09 Aligned_cols=107 Identities=11% Similarity=0.020 Sum_probs=81.9
Q ss_pred CccccccccCCcEEEEEceeecCHHHHHHHh---C-C-CCcCchHHHHHHHHHHhhh-cCCCC-------hhhhhcccc-
Q 029384 64 PLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---G-L-AKSANEVILVIEAYKALRD-RAPYP-------PNHVVGHLS- 129 (194)
Q Consensus 64 ~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G-~-~kt~sdtevileaY~~~~d-rGPyp-------~~~~l~~L~- 129 (194)
...||... ++++++.||.|+|+.+||..+ | . .+++||+|++.++.....+ .++-+ ..+.++.|+
T Consensus 98 ~n~hPf~~--~~~~~~HNG~i~n~~~l~~~l~~~~~~~~~~~tDSE~~~~li~~~l~~~~~~~~~~~~~al~~~~~~l~~ 175 (257)
T cd01908 98 ENCHPFTR--GRWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTDSELAFALLLSRLLERDPLDPAELLDAILQTLRELAA 175 (257)
T ss_pred ccCCCccc--CCEEEEeCCccCCcchhhHHHHhcCccCCccCCHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Confidence 33455544 389999999999999999887 3 2 4889999999988865432 22210 124778888
Q ss_pred ----cceEEEEEECCCCeEEEEeccCCceeEEEEee------------------CCeEEEEechhHhH
Q 029384 130 ----GYFAFIVYDKSTSTLTNLVRFLFIGESLLMDM------------------LPLLMMLTCSKVLA 175 (194)
Q Consensus 130 ----GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~------------------~~~l~FaSEiKal~ 175 (194)
|.++|++-|. .++++.||+. ++||||... ++.+++|||.=+..
T Consensus 176 ~~~~~~~n~~~~dg--~~l~a~r~~~-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~vvaSE~l~~~ 240 (257)
T cd01908 176 LAPPGRLNLLLSDG--EYLIATRYAS-APSLYYLTRRAPFGCARLLFRSVTTPNDDGVVVASEPLTDD 240 (257)
T ss_pred hCcCeEEEEEEECC--CEEEEEEeCC-CCceEEEeccccccccccccccccCCCCCEEEEEeCCCCCC
Confidence 7899999886 7799999998 899999986 47899999976554
No 43
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
Probab=98.91 E-value=2.1e-08 Score=91.72 Aligned_cols=133 Identities=12% Similarity=0.077 Sum_probs=85.9
Q ss_pred CCChHHHHHHhhcCCCCcE--EEEeCCceeEEEecCCCC--CccccccccCCcEEEEEceeecCHHHHHHHh---CC-CC
Q 029384 27 KTTSTALVDRFLQTNSSAV--SVQVGDNVTLAYTHQNES--PLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL-AK 98 (194)
Q Consensus 27 ~~~~~~l~~~f~~~~~~a~--sv~~g~~~~lays~~~~~--~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~k 98 (194)
-..+++|.+-|....-..+ .+.+|| .=|+-.-.+ ..-||.. +++-||||.|+..+|+.+ +. .+
T Consensus 175 ~~~~~~l~~~y~Dl~~~~~~s~~~i~H---~RysTnt~p~w~~AqPf~------~laHNGeInt~~~n~~~l~~r~~~~~ 245 (361)
T PF00310_consen 175 MGTPEQLAEFYPDLQDEDFKSHFAIGH---QRYSTNTFPSWENAQPFR------ALAHNGEINTIRGNRNWLEARGYKLN 245 (361)
T ss_dssp CC-GGGHHHHCCGGGCTTEEBSEEEEE---EEE-SSSSCSGGGSSSEE------EEEEEEEETTHHHHHHHHHHHCCCBS
T ss_pred ccCHHHHHHHHHhhccccccceEEEEE---EecCCCCCCcchhcChHH------HhhhccccccHHHHHHHHHhhccccc
Confidence 3567778777755322222 233344 224322222 4445554 899999999999999885 33 24
Q ss_pred c----------------CchHHHHHHHHHHhhhcCCCCh-----------------------------hhhhcccccceE
Q 029384 99 S----------------ANEVILVIEAYKALRDRAPYPP-----------------------------NHVVGHLSGYFA 133 (194)
Q Consensus 99 t----------------~sdtevileaY~~~~drGPyp~-----------------------------~~~l~~L~GmFA 133 (194)
+ .||++++.++.+.+-.+| ++. ..+.+.++|-||
T Consensus 246 ~~~~~~~~~~~pi~~~~~SDS~~l~~~le~l~~~g-~~l~~a~~~l~p~~~~~~~~~~~~~~~~y~~~~~~~~~~dGPaa 324 (361)
T PF00310_consen 246 SPLFGDLKELLPIVNPGGSDSEVLDNLLELLLRRG-RSLEEAMMMLIPPAWENDEDMSPEKRAFYEYHASLMEPWDGPAA 324 (361)
T ss_dssp STTCGHHHCC-SSS-TTS-HHHHHHHHHHHHHHTT-SSHHHHHHHHSGG--TTSCCSTHHHHHHHHHHHHHHCC--CCEE
T ss_pred CccccchhhcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHhhCCcccccCccCCHHHHHHHHHHHHhhccCCCceE
Confidence 4 999999999988887777 211 134677999999
Q ss_pred EEEEECCCCeEEEEeccCCceeEEEEee-CCeEEEEech
Q 029384 134 FIVYDKSTSTLTNLVRFLFIGESLLMDM-LPLLMMLTCS 171 (194)
Q Consensus 134 FvIyD~~~~~lf~ARDr~GiKPlyY~~~-~~~l~FaSEi 171 (194)
+++-|.. .+++.|||.|++|+.|..+ ++.+++|||-
T Consensus 325 i~~~~g~--~~~a~~Dr~GLRP~~~~~~~d~~~v~aSE~ 361 (361)
T PF00310_consen 325 IIFTDGN--GVGAFLDRNGLRPLRYGITEDGLVVLASEA 361 (361)
T ss_dssp EEEECSS--EEEEEE-TT--S--EEEEETTCEEEEESST
T ss_pred EEEEeCC--EEEEEECCCCCcceEEEEECCCEEEEEeCC
Confidence 9998775 5999999999999999998 7888899993
No 44
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=98.87 E-value=1.1e-08 Score=95.36 Aligned_cols=131 Identities=15% Similarity=0.137 Sum_probs=94.1
Q ss_pred EEEEeCCceeEEEecCC--CCCccccccc--cCCcEEEEEceeecCHHHHHHHh---CCC-CcCchHHHHHHHHHH----
Q 029384 45 VSVQVGDNVTLAYTHQN--ESPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKA---- 112 (194)
Q Consensus 45 ~sv~~g~~~~lays~~~--~~~~~~~~f~--~~~~i~~vFNGeIyN~~eLr~q~---G~~-kt~sdtevileaY~~---- 112 (194)
=+|-+|| +-|+-.- ...-.||... ..+.+.+.-||++-|+++||+++ |.. .|+||+|+|++.+..
T Consensus 68 g~~gIGH---~RYsTaG~s~~~n~QPFvv~t~~G~lavAHNGnLVN~~~Lrr~l~~~g~~l~T~SDSElil~~~a~~~~~ 144 (474)
T KOG0572|consen 68 GSIGIGH---TRYSTAGSSALSNVQPFVVNTPHGSLAVAHNGNLVNYKSLRRELLEEGVGLNTSSDSELILQLIAYAPED 144 (474)
T ss_pred cceeeee---eecccccccccccccceEeeccCceEEEeccCcccchHHHHHHHHhcCcccccCCcHHHHHHHHHhchHh
Confidence 3455666 5564322 2233454433 35779999999999999999997 443 899999999987653
Q ss_pred -hhhcC-CCCh--hhhhcccccceEEEEEECCCCeEEEEeccCCceeEEEEeeC-----CeEEEEechhHhHhhccc
Q 029384 113 -LRDRA-PYPP--NHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFIGESLLMDML-----PLLMMLTCSKVLAASHLL 180 (194)
Q Consensus 113 -~~drG-Pyp~--~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~-----~~l~FaSEiKal~a~~~~ 180 (194)
++..+ +|++ .++.+.++|.|+.++--. ++|++.||++|++||...... +.+++|||.-+|++.+.-
T Consensus 145 ~~~~~~~d~~~ri~~~~~~~~g~Yslv~m~~--d~l~avRDp~G~RPL~iG~r~~~~g~~~~v~aSESc~f~~i~a~ 219 (474)
T KOG0572|consen 145 VYRVDAPDWFARIRDVMELLPGAYSLVFMTA--DKLYAVRDPYGNRPLCIGRRSNPDGTEAWVVASESCAFLSIGAR 219 (474)
T ss_pred hhcccCccHHHHHHHHHHhcCCceeEEEEEc--cEEEEEecCCCCccceEeeecCCCCcceEEEEecceeeeecccE
Confidence 12222 2222 257788999999888754 459999999999999987632 369999999999887643
No 45
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=98.67 E-value=1.3e-07 Score=82.14 Aligned_cols=100 Identities=11% Similarity=0.037 Sum_probs=77.7
Q ss_pred ccccccccCCcEEEEEceeecCHH-----HHHHHh---CC--CCcCchHHHHHHHHHHhh-hcCCCChh----hhhcccc
Q 029384 65 LRQRSFAVKDEIFCLFEGALDNLG-----SLRQQY---GL--AKSANEVILVIEAYKALR-DRAPYPPN----HVVGHLS 129 (194)
Q Consensus 65 ~~~~~f~~~~~i~~vFNGeIyN~~-----eLr~q~---G~--~kt~sdtevileaY~~~~-drGPyp~~----~~l~~L~ 129 (194)
..||... ++++++.||.|-|+. +||+++ |+ .+++||+|++.++..... +.+|...+ ++++.|.
T Consensus 102 N~hPf~~--g~~~~aHNG~i~n~~~~~r~~L~~~l~~~~~~~~~g~TDSE~i~~li~~~~~~~~~~~~~~ai~~~~~~l~ 179 (251)
T TIGR03442 102 ACAPFSD--GRWLFSHNGFVDNFRQTLYRPLRDRLPDIFYLAIEGSTDSAHLFALLLNRLLENDPRALEEALAEVLLILF 179 (251)
T ss_pred cCCCCCc--CCEEEEeCCccCCchhhhhHHHHhcCChhhccCCCCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 3455543 699999999999998 566665 32 478999999888887654 32333322 4667778
Q ss_pred cc-------eEEEEEECCCCeEEEEeccCCceeEEEEeeCCeEEEEech
Q 029384 130 GY-------FAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTCS 171 (194)
Q Consensus 130 Gm-------FAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~~~l~FaSEi 171 (194)
|. |.|++=|. .+|++.||+- ||||...++.+++|||-
T Consensus 180 ~~~~~~~~~~n~~~sdg--~~l~a~R~~~---~L~~~~~~~~~vvASEp 223 (251)
T TIGR03442 180 SAAAAPRVRLNLLLTDG--SRLVATRWAD---TLYWLKDPEGVIVASEP 223 (251)
T ss_pred HHhhCcccceEEEEEcC--CEEEEEEeCC---eEEEEEcCCEEEEEeCC
Confidence 87 99999995 8899999986 99999988999999998
No 46
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=97.77 E-value=2.2e-05 Score=76.13 Aligned_cols=90 Identities=16% Similarity=0.272 Sum_probs=69.2
Q ss_pred cccccccCCcEEEEEceeecCHHHHHHHh---CCC-CcCchHHHHHHHHHHhhhcCCCC------hhhhhcccccceEEE
Q 029384 66 RQRSFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYP------PNHVVGHLSGYFAFI 135 (194)
Q Consensus 66 ~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~~-kt~sdtevileaY~~~~drGPyp------~~~~l~~L~GmFAFv 135 (194)
||-.....+...+|-||-|-||++||+-+ |+. .+++|||+|-++|+..-|.-|-. .++++++|+|-||++
T Consensus 100 HP~rSd~~n~FvVVHNGIITNyk~lK~~L~~kG~~FESdTDTEciaKL~~~~~D~~~~~~~F~~lv~~v~k~lEGaFalv 179 (670)
T KOG1268|consen 100 HPHRSDPSNEFVVVHNGIITNFKELKALLEKKGYVFESDTDTECIAKLYKHIYDTSPEDLDFHVLVELVLKELEGAFGLL 179 (670)
T ss_pred CCCcCCCCCcEEEEEcCeeccHHHHHHHHHhcCceeecccchHHHHHHHHHHHhhCCCcccHHHHHHHHHHHhhhHHHHH
Confidence 44344667889999999999999999887 774 78999999999998765554310 468999999999998
Q ss_pred EEECC-CCeEEEEecc----CCcee
Q 029384 136 VYDKS-TSTLTNLVRF----LFIGE 155 (194)
Q Consensus 136 IyD~~-~~~lf~ARDr----~GiKP 155 (194)
.=-+. -+++.+.|+- .|+|+
T Consensus 180 fkS~hfP~e~Va~RrgSPlliGvKs 204 (670)
T KOG1268|consen 180 FKSSHFPGEVVAARKGSPLLIGVKS 204 (670)
T ss_pred HHhhcCCcceeeeccCCcceeeecc
Confidence 75433 4888888882 56554
No 47
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=97.44 E-value=0.0012 Score=70.20 Aligned_cols=139 Identities=9% Similarity=0.005 Sum_probs=84.9
Q ss_pred CChHHHHHHhhcCCCCcEEEEeCCceeEEEecCCCCCccccccccC-CcEEEEEceeecCHHHHHHHh-----C--C---
Q 029384 28 TTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVK-DEIFCLFEGALDNLGSLRQQY-----G--L--- 96 (194)
Q Consensus 28 ~~~~~l~~~f~~~~~~a~sv~~g~~~~lays~~~~~~~~~~~f~~~-~~i~~vFNGeIyN~~eLr~q~-----G--~--- 96 (194)
..+++|.+-|..-.-..+. +.+|..|+.-+-...|.+.-- ---+++-||||.-+.--|... - .
T Consensus 193 l~~~ql~~fY~DL~d~~~~------s~~al~HsRFSTNT~PsW~~AqPFR~laHNGEINTi~gN~nwm~are~~l~s~~~ 266 (1485)
T PRK11750 193 MMPADLPRFYLDLADLRLE------SAICVFHQRFSTNTLPRWPLAQPFRYLAHNGEINTITGNRQWARARAYKFQTPLI 266 (1485)
T ss_pred ccHHHHHHhhhhhCCccee------EEEEEEECcCCCCCCCCCCcCCCceeeeeccccccHHHHHHHHHHHHHhccCCCc
Confidence 5678888888854332222 223333332221122222111 122469999998776554331 1 1
Q ss_pred ----------CCcCchHHHHHHHHHHhhhcCCCChh-----------------------------hhhcccccceEEEEE
Q 029384 97 ----------AKSANEVILVIEAYKALRDRAPYPPN-----------------------------HVVGHLSGYFAFIVY 137 (194)
Q Consensus 97 ----------~kt~sdtevileaY~~~~drGPyp~~-----------------------------~~l~~L~GmFAFvIy 137 (194)
....||++++=.+.+-+-..| .+.. -+.+-++|-||+++-
T Consensus 267 ~~~~~~~Pii~~~~SDSa~lDn~lElL~~~G-~sl~~A~~mliPeaW~~~~~m~~~~r~fYeY~s~lmEpwdGpaaiv~~ 345 (1485)
T PRK11750 267 PDLQEAAPFVNETGSDSSSLDNMLELLLAGG-MDLFRAMRLLVPPAWQNNPDMDPDLRAFYEFNSMHMEPWDGPAGIVMT 345 (1485)
T ss_pred chHHhhCCcCCCCCChHHHHHHHHHHHHHcC-CCHHHHHHHhCCcccccCCCCCHHHHHHHHHHHhhcccCCCCEEEEEE
Confidence 256778887766555443333 1111 244456999999999
Q ss_pred ECCCCeEEEEeccCCceeEEEEe-eCCeEEEEechhHhH
Q 029384 138 DKSTSTLTNLVRFLFIGESLLMD-MLPLLMMLTCSKVLA 175 (194)
Q Consensus 138 D~~~~~lf~ARDr~GiKPlyY~~-~~~~l~FaSEiKal~ 175 (194)
|. +.+.+.|||.|.||+-|.. +++.+++|||.-+|-
T Consensus 346 ~g--~~i~A~~DrnGlRPlr~~~~~d~~~i~aSE~g~ld 382 (1485)
T PRK11750 346 DG--RYAACNLDRNGLRPARYVITKDKLITLASEVGIWD 382 (1485)
T ss_pred eC--CEEEEecCCCCCccceEEEEcCCEEEEEecceeee
Confidence 95 8999999999999996555 566699999988765
No 48
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.
Probab=96.40 E-value=0.032 Score=48.09 Aligned_cols=92 Identities=20% Similarity=0.242 Sum_probs=62.6
Q ss_pred ccCCcEEEEEceeecCHHHHHHHhCC----CCcCchHHHHHHHHHHhhhcCCCChhhhhcccccceEEEEEECCCCeEEE
Q 029384 71 AVKDEIFCLFEGALDNLGSLRQQYGL----AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLTN 146 (194)
Q Consensus 71 ~~~~~i~~vFNGeIyN~~eLr~q~G~----~kt~sdtevileaY~~~~drGPyp~~~~l~~L~GmFAFvIyD~~~~~lf~ 146 (194)
.+.+..+++ |.|||-.-||.-.|. .-.-||+|+++-.|-.+| ...+.--+|.|.|.|=| ++++|.+
T Consensus 46 ~~~~tayLI--GsiyNr~~L~~lag~~eg~a~v~nd~ElL~~~~~~lG-------~~aLsLAEGdfcffiE~-kng~L~l 115 (201)
T PF09147_consen 46 FERGTAYLI--GSIYNRRFLRGLAGMWEGHAYVLNDAELLYTIFTRLG-------NSALSLAEGDFCFFIED-KNGELTL 115 (201)
T ss_dssp ETTEEEEEE--S--S-HHHHHHHHTTT-GGGGG--HHHHHHHHHHHH--------GGGGGG--SSEEEEEEE-TTSEEEE
T ss_pred ecCccEEEE--EEeccHHHHHHhhheeeccceeeccHHHHHHHHHHhh-------hhhhhhhcCceEEEEec-CCCcEEE
Confidence 334444554 999999999988765 367899999999999887 57999999999999975 5799999
Q ss_pred EeccCCceeEEEEeeCCeEEEEechhH
Q 029384 147 LVRFLFIGESLLMDMLPLLMMLTCSKV 173 (194)
Q Consensus 147 ARDr~GiKPlyY~~~~~~l~FaSEiKa 173 (194)
-.|.=|.-|.|.-+.+.. +.---+|-
T Consensus 116 ~Tds~G~~pv~lV~~~~~-WiTn~LK~ 141 (201)
T PF09147_consen 116 ITDSRGFNPVYLVQSKFI-WITNSLKL 141 (201)
T ss_dssp EE-SSSSS-EEEEESSSE-EEES-HHH
T ss_pred EecCCCCceEEEEecCce-EEecceEE
Confidence 999999999987776644 33333443
No 49
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D.
Probab=94.11 E-value=0.11 Score=45.90 Aligned_cols=74 Identities=15% Similarity=0.244 Sum_probs=44.4
Q ss_pred CCcEEEEEceeecCHHHHHH-HhCCCCcCchHHHHHHHHH-HhhhcCC---CChh-------hhhcccc--cceEEEEEE
Q 029384 73 KDEIFCLFEGALDNLGSLRQ-QYGLAKSANEVILVIEAYK-ALRDRAP---YPPN-------HVVGHLS--GYFAFIVYD 138 (194)
Q Consensus 73 ~~~i~~vFNGeIyN~~eLr~-q~G~~kt~sdtevileaY~-~~~drGP---yp~~-------~~l~~L~--GmFAFvIyD 138 (194)
.++++.+-||.|+++..++. .|- ..+++|+|.+....- .+.+.++ ...+ +.+++++ |.+.|++.|
T Consensus 100 g~~w~FaHNG~i~~f~~~~~~~~~-~~G~TDSE~~F~lll~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~N~~lsD 178 (271)
T PF13230_consen 100 GRRWLFAHNGTIPGFEDILDDRYQ-PVGTTDSEHAFCLLLDQLRDRGPDAPPALEELFEALRELAKEINEYGSLNFLLSD 178 (271)
T ss_dssp ETTEEEEEEEEETTGGGGHHHHHT---S--HHHHHHHHHHHTTTTT-HH--HHHHHHHHHHHHHHHS-SSSEEEEEEEE-
T ss_pred CCcEEEEeCCccccccccCccccc-cCCCcHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhccCeeEEEEEEC
Confidence 36899999999999988773 244 466777777766654 3333332 1111 2234444 789999999
Q ss_pred CCCCeEEEEec
Q 029384 139 KSTSTLTNLVR 149 (194)
Q Consensus 139 ~~~~~lf~ARD 149 (194)
- .+||+-|+
T Consensus 179 G--~~l~a~~~ 187 (271)
T PF13230_consen 179 G--ERLFAHRY 187 (271)
T ss_dssp S--S-EEEEEE
T ss_pred C--ceEEEEEc
Confidence 7 68999998
No 50
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=93.65 E-value=0.67 Score=43.47 Aligned_cols=34 Identities=15% Similarity=0.295 Sum_probs=25.3
Q ss_pred EEEEceeecCHHHHHHHh---CC-CCcCchHHHHHHHH
Q 029384 77 FCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAY 110 (194)
Q Consensus 77 ~~vFNGeIyN~~eLr~q~---G~-~kt~sdtevileaY 110 (194)
+++-||||.++.-.|+.+ |. .++.+|+|++-+++
T Consensus 227 ~lvHNGEInT~~gN~nwm~ar~~~~~s~~~~e~~a~l~ 264 (371)
T COG0067 227 LLVHNGEINTYGGNRNWLEARGYKFESPTDGEVLAKLL 264 (371)
T ss_pred eeeecceecccccHHHHHHHhhcccccCccHHHHHHHH
Confidence 349999999999988765 44 37777777766655
No 51
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=58.37 E-value=46 Score=23.55 Aligned_cols=49 Identities=14% Similarity=0.112 Sum_probs=34.1
Q ss_pred CchHHHHHHHHHHhhhcCCCChhhhhcccccceEEEEEECCCCeEEEEeccCCc--eeEEEE
Q 029384 100 ANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLTNLVRFLFI--GESLLM 159 (194)
Q Consensus 100 ~sdtevileaY~~~~drGPyp~~~~l~~L~GmFAFvIyD~~~~~lf~ARDr~Gi--KPlyY~ 159 (194)
++|.+-+++.++.+|..|- + .- +-=+.||...+++++..|. |. +||+.-
T Consensus 11 ~~~p~~l~~~lr~~RR~g~------i---~~-~vsi~~~~~~~ei~I~tD~-GR~~RPL~vV 61 (63)
T PF04566_consen 11 HSDPEELVKTLRNLRRSGK------I---SK-EVSIVYDIREKEIRINTDA-GRLCRPLFVV 61 (63)
T ss_dssp ESSHHHHHHHHHHHHHTTS------S----T-TSEEEEETTTTEEEEE-SS-CEEEEEEEEE
T ss_pred EcCHHHHHHHHHHHhhccC------C---cc-eeEEEEeccCCEEEEEccC-CcccceeEEe
Confidence 4577778899999997762 1 11 2234699999999999996 44 788753
No 52
>PRK05761 DNA polymerase I; Reviewed
Probab=46.81 E-value=22 Score=36.18 Aligned_cols=34 Identities=18% Similarity=0.074 Sum_probs=28.8
Q ss_pred ceEEEEEECCCCeEEEEeccCCceeEEEEeeCCe
Q 029384 131 YFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPL 164 (194)
Q Consensus 131 mFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~~~ 164 (194)
.=..-||++.++++++..||.|-||+||...++.
T Consensus 32 ~~vi~l~~~~~~~~~~~~d~~gfkPYfy~~~~~~ 65 (787)
T PRK05761 32 KAVVKLYDPETGKIYKWYDRTGHKPYFLTDLDPD 65 (787)
T ss_pred eeEEEEEecCCCeEEEEEcCCCCCCeEEecCChH
Confidence 3456799999999999999999999999875544
No 53
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=30.62 E-value=1e+02 Score=24.57 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=29.9
Q ss_pred hHHHHHHhhcCCCCcEEEEeCCceeEEEecCCCCCccc
Q 029384 30 STALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQ 67 (194)
Q Consensus 30 ~~~l~~~f~~~~~~a~sv~~g~~~~lays~~~~~~~~~ 67 (194)
+++.++.+..++.|+++++-+....+||=+++--..+|
T Consensus 2 ~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp 39 (132)
T PF14871_consen 2 PEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHP 39 (132)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCC
Confidence 67899999999999999999866779996655433344
No 54
>PF04398 DUF538: Protein of unknown function, DUF538; InterPro: IPR007493 This family consists of several plant proteins of unknown function.; PDB: 1YDU_A.
Probab=30.10 E-value=49 Score=25.83 Aligned_cols=51 Identities=8% Similarity=-0.132 Sum_probs=35.1
Q ss_pred EEECCCCeEEEEeccCCceeEEEEeeCCeEEEEechhHhHhhccceeeeeecccc
Q 029384 136 VYDKSTSTLTNLVRFLFIGESLLMDMLPLLMMLTCSKVLAASHLLLSLKVVSSQQ 190 (194)
Q Consensus 136 IyD~~~~~lf~ARDr~GiKPlyY~~~~~~l~FaSEiKal~a~~~~~~~~~~~~~~ 190 (194)
-+|+.||.+.+-.+. |.+....+-.+.+.++|++.++.|-+..|+=|+.+.
T Consensus 24 ~l~~~tG~f~v~l~~----~C~~~~~~~~v~Y~~~ItG~i~~g~i~~L~GVk~k~ 74 (110)
T PF04398_consen 24 GLNRDTGFFWVKLKS----PCEFRFEGYLVSYDSEITGYIEKGKIKNLTGVKVKE 74 (110)
T ss_dssp EE-TTT-SEEEE-SS-----EEEESTTSEEEE-SEEEEEE-SS-EEEEES-EEE-
T ss_pred EEecCCcEEEEEecC----CEEEEEEEEEEEEcCeEEEEECCCcCccccCEEEEE
Confidence 468888999988774 777776667899999999999999999998887764
No 55
>KOG0537 consensus Cytochrome b5 [Energy production and conversion]
Probab=28.90 E-value=39 Score=26.91 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=20.1
Q ss_pred cCCcEEEEEceeecCHHHHHHHh
Q 029384 72 VKDEIFCLFEGALDNLGSLRQQY 94 (194)
Q Consensus 72 ~~~~i~~vFNGeIyN~~eLr~q~ 94 (194)
..+|.|++.+|.+||.-..-.++
T Consensus 17 ~~~d~Wvii~gkVYDvT~Fl~eH 39 (124)
T KOG0537|consen 17 KKDDCWVIIHGKVYDVTSFLDEH 39 (124)
T ss_pred CCCCeEEEECCEEEeccchhhhC
Confidence 46899999999999999887765
No 56
>PF10611 DUF2469: Protein of unknown function (DUF2469); InterPro: IPR019592 This entry represents a group of proteins often found in Actinomycetes species, clustered with signal peptidase and/or RNAse-HII.
Probab=27.55 E-value=87 Score=24.65 Aligned_cols=34 Identities=24% Similarity=0.448 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHhhhcCCCChhhhhcccccceEEEEEECCCCeEEEEec
Q 029384 102 EVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLTNLVR 149 (194)
Q Consensus 102 dtevileaY~~~~drGPyp~~~~l~~L~GmFAFvIyD~~~~~lf~ARD 149 (194)
|+++=|++|+++| +++ |.|.+|+= ..++.++|-+
T Consensus 10 Ete~EL~LYrEYr--------DVv----~lF~yvVE--TeRRFYLaN~ 43 (101)
T PF10611_consen 10 ETEMELALYREYR--------DVV----GLFSYVVE--TERRFYLANQ 43 (101)
T ss_pred hhHHHHHHHHHHH--------HHH----hheeeEEE--eeeeeEeecc
Confidence 3444469999998 354 78999984 5577777755
No 57
>PF09466 Yqai: Hypothetical protein Yqai; InterPro: IPR018474 The hypothetical protein YqaI is expressed in bacteria, particularly Bacillus subtilis. It forms a homo-dimer, with each monomer containing an alpha helix and four beta strands.; PDB: 2DSM_B.
Probab=27.04 E-value=48 Score=24.61 Aligned_cols=28 Identities=36% Similarity=0.579 Sum_probs=17.9
Q ss_pred CCcEEEEEceee---cCHHH-HHHHhCCC-CcC
Q 029384 73 KDEIFCLFEGAL---DNLGS-LRQQYGLA-KSA 100 (194)
Q Consensus 73 ~~~i~~vFNGeI---yN~~e-Lr~q~G~~-kt~ 100 (194)
.|++++.|+||| +|+.. |.+++|+. |++
T Consensus 37 ~D~y~i~~~geIvL~eNl~~YLie~lg~e~k~a 69 (71)
T PF09466_consen 37 GDDYFISPDGEIVLEENLKRYLIEQLGFEFKTA 69 (71)
T ss_dssp TS-EEE-ETTEEEECCCHHHHHHHTTTEEEE--
T ss_pred CCeEEEeCCCcEEehhhHHHHHHHHcCeEEeec
Confidence 467777799998 68765 77888873 443
No 58
>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts []. The microsomal and mitochondrial variants are membrane-bound, while those from erythrocytes and other animal tissues are water-soluble [, ]. The 3D structure of bovine cyt b5 is known, the fold belonging to the alpha+beta class, with 5 strands and 5 short helices forming a framework for supporting a central haem group []. The cytochrome b5 domain is similar to that of a number of oxidoreductases, such as plant and fungal nitrate reductases, sulphite oxidase, yeast flavocytochrome b2 (L-lactate dehydrogenase) and plant cyt b5/acyl lipid desaturase fusion protein.; GO: 0020037 heme binding; PDB: 2I96_A 3KS0_A 1KBI_B 1KBJ_B 1LTD_A 1SZG_B 1SZF_A 1LDC_B 2OZ0_B 1LCO_A ....
Probab=26.28 E-value=36 Score=23.26 Aligned_cols=23 Identities=9% Similarity=0.319 Sum_probs=19.9
Q ss_pred cCCcEEEEEceeecCHHHHHHHh
Q 029384 72 VKDEIFCLFEGALDNLGSLRQQY 94 (194)
Q Consensus 72 ~~~~i~~vFNGeIyN~~eLr~q~ 94 (194)
..++++++.+|.|||+.....+.
T Consensus 12 ~~~~~~v~i~g~VYDvt~~~~~h 34 (76)
T PF00173_consen 12 KKGDCWVIIDGKVYDVTDFLDRH 34 (76)
T ss_dssp ETTEEEEEETTEEEECTTTTTTS
T ss_pred CCCCEEEEECCEEcccccccccc
Confidence 56899999999999999977664
No 59
>PRK06764 hypothetical protein; Provisional
Probab=26.07 E-value=49 Score=25.84 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=16.7
Q ss_pred cccccCCcEEEEEceeecC
Q 029384 68 RSFAVKDEIFCLFEGALDN 86 (194)
Q Consensus 68 ~~f~~~~~i~~vFNGeIyN 86 (194)
-.|+.-+.+++-.||.|||
T Consensus 78 i~f~kpg~yvirvngciy~ 96 (105)
T PRK06764 78 IRFSKPGKYVIRVNGCIYN 96 (105)
T ss_pred EEecCCccEEEEEccEEee
Confidence 4577789999999999998
No 60
>TIGR03823 FliZ flagellar regulatory protein FliZ. FliZ is involved in the regulation of flagellar assembly and possibly also the down-regulation of the motile phenotype. FliZ interacts with the flagellar translational activator FlhCD complex.
Probab=25.76 E-value=50 Score=28.16 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=16.9
Q ss_pred CCcEEEEEceeecCHHHHH
Q 029384 73 KDEIFCLFEGALDNLGSLR 91 (194)
Q Consensus 73 ~~~i~~vFNGeIyN~~eLr 91 (194)
.|+|.+||||+|=|=.++.
T Consensus 32 LDRisLV~~gqiinK~~Ia 50 (168)
T TIGR03823 32 LDRISLVFRGQIINKESIS 50 (168)
T ss_pred hhheeeeecceeecHHHHH
Confidence 5899999999999987765
No 61
>PF05132 RNA_pol_Rpc4: RNA polymerase III RPC4; InterPro: IPR007811 This family comprises a specific subunit for Pol III, the tRNA specific polymerase.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006383 transcription from RNA polymerase III promoter, 0005666 DNA-directed RNA polymerase III complex
Probab=25.72 E-value=75 Score=24.99 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=23.9
Q ss_pred CCCCcEEEEeCCceeEEEecCCCCCccccccc
Q 029384 40 TNSSAVSVQVGDNVTLAYTHQNESPLRQRSFA 71 (194)
Q Consensus 40 ~~~~a~sv~~g~~~~lays~~~~~~~~~~~f~ 71 (194)
+.++.++|.+|+ ..+..+++.+..+.|-..+
T Consensus 75 ~kSGkv~l~iG~-~~~dV~~G~~~~FlQevv~ 105 (131)
T PF05132_consen 75 HKSGKVTLKIGG-VVFDVSPGTQCSFLQEVVA 105 (131)
T ss_pred EeCCcEEEEECC-EEEEecCCCCCCchheEEE
Confidence 456899999996 8888999888877774433
No 62
>PF11213 DUF3006: Protein of unknown function (DUF3006); InterPro: IPR021377 This family of proteins has no known function.
Probab=25.65 E-value=52 Score=23.45 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=26.8
Q ss_pred hhcccccceEEEEEECCCCeEEEEeccC--Ccee
Q 029384 124 VVGHLSGYFAFIVYDKSTSTLTNLVRFL--FIGE 155 (194)
Q Consensus 124 ~l~~L~GmFAFvIyD~~~~~lf~ARDr~--GiKP 155 (194)
+|+++.|.||.++.+...+.+-+-|+++ |.|.
T Consensus 3 ivDRiE~~~AVl~~~~~~~~~~vp~~~LP~~~ke 36 (71)
T PF11213_consen 3 IVDRIEGDYAVLELEDGEKEIDVPRSRLPEGAKE 36 (71)
T ss_pred EEEEEeCCEEEEEECCCeEEEEEEHHHCCCCCCc
Confidence 6899999999999999888899999853 5554
No 63
>PRK11582 flagella biosynthesis protein FliZ; Provisional
Probab=25.52 E-value=51 Score=28.12 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=16.9
Q ss_pred CCcEEEEEceeecCHHHHH
Q 029384 73 KDEIFCLFEGALDNLGSLR 91 (194)
Q Consensus 73 ~~~i~~vFNGeIyN~~eLr 91 (194)
.|+|.+||||+|=|=..+.
T Consensus 32 LDRisLV~~gqiinK~~Ia 50 (169)
T PRK11582 32 LDRITLVFRGQIINKIAIS 50 (169)
T ss_pred hhheeeeecceeecHHHHH
Confidence 5899999999999987765
No 64
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=24.28 E-value=36 Score=23.17 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=17.6
Q ss_pred cccceEEEEEECCCCeEEEEeccCC
Q 029384 128 LSGYFAFIVYDKSTSTLTNLVRFLF 152 (194)
Q Consensus 128 L~GmFAFvIyD~~~~~lf~ARDr~G 152 (194)
-+.-|+|++.|.....+|+..+.+.
T Consensus 6 ~~~GfGFv~~~~~~~DifIp~~~l~ 30 (58)
T PF08206_consen 6 HPKGFGFVIPDDGGEDIFIPPRNLN 30 (58)
T ss_dssp -SSS-EEEEECT-TEEEEE-HHHHT
T ss_pred EcCCCEEEEECCCCCCEEECHHHHC
Confidence 3566999999998999999988654
No 65
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=23.95 E-value=53 Score=24.76 Aligned_cols=18 Identities=6% Similarity=0.187 Sum_probs=15.1
Q ss_pred cCCcEEEEEceeecCHHH
Q 029384 72 VKDEIFCLFEGALDNLGS 89 (194)
Q Consensus 72 ~~~~i~~vFNGeIyN~~e 89 (194)
.++.++|.|||.+|+..-
T Consensus 15 ~nGpaYiA~~G~VYDvS~ 32 (81)
T COG4892 15 ENGPAYIAVNGTVYDVSL 32 (81)
T ss_pred CCCCeEEEECCEEEeecc
Confidence 457899999999999764
No 66
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=23.19 E-value=78 Score=29.11 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=24.1
Q ss_pred cCchHHHHHHHHHHhhh------c-CCCChhhhh-cccccceE
Q 029384 99 SANEVILVIEAYKALRD------R-APYPPNHVV-GHLSGYFA 133 (194)
Q Consensus 99 t~sdtevileaY~~~~d------r-GPyp~~~~l-~~L~GmFA 133 (194)
++-|. +|+-+.+++++ . ||+|+|-+. +..+|.|=
T Consensus 196 G~EE~-iI~PAi~~~~~~~g~~~~~GP~paDt~F~~~~~~~~D 237 (307)
T PRK03946 196 GGEEE-EIKKAIKKANQFLGFEIFFGPLVPDSAFTPNKRKKFN 237 (307)
T ss_pred CcchH-HHHHHHHHHHHhcCCCcccCCcCchhhcccccccCCC
Confidence 46677 99999999883 3 999998644 34455543
No 67
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=22.50 E-value=79 Score=29.29 Aligned_cols=37 Identities=27% Similarity=0.552 Sum_probs=27.0
Q ss_pred cCchHHHHHHHHHHhh-----hcCCCChhhh-hcccccceEEE
Q 029384 99 SANEVILVIEAYKALR-----DRAPYPPNHV-VGHLSGYFAFI 135 (194)
Q Consensus 99 t~sdtevileaY~~~~-----drGPyp~~~~-l~~L~GmFAFv 135 (194)
++-|.++|+-|.++++ -.||||+|-+ .+..+|.|-.+
T Consensus 220 G~EE~~iI~PAi~~~~~~G~~v~GP~paDt~F~~~~~~~~D~v 262 (326)
T PRK03371 220 GDEEIRIVTPAIEAMRAKGMDVYGPCPPDTVFLQAYEGQYDMV 262 (326)
T ss_pred cHHHHHHHHHHHHHHHHCCCcccCCCCchhhcccccccCCCEE
Confidence 4789999999999876 4589999864 44456655443
No 68
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=21.90 E-value=83 Score=29.28 Aligned_cols=34 Identities=18% Similarity=0.421 Sum_probs=24.8
Q ss_pred cCchHHHHHHHHHHhh-----hcCCCChhhhhc-ccccce
Q 029384 99 SANEVILVIEAYKALR-----DRAPYPPNHVVG-HLSGYF 132 (194)
Q Consensus 99 t~sdtevileaY~~~~-----drGPyp~~~~l~-~L~GmF 132 (194)
++-|.++|+-|.++++ -.||+|+|-+.. ..+|.|
T Consensus 226 G~EE~~iI~PAI~~~~~~Gi~v~GP~paDt~F~~~~~~~~ 265 (336)
T PRK05312 226 GREDIDIIAPAIEQLRAEGIDARGPLPADTMFHAAARATY 265 (336)
T ss_pred cHHHHHHHHHHHHHHHHCCCCccCCCCchhhcccccccCC
Confidence 4789999999999887 458999986443 334444
No 69
>cd01949 GGDEF Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.
Probab=21.49 E-value=2.2e+02 Score=20.19 Aligned_cols=57 Identities=21% Similarity=0.326 Sum_probs=32.9
Q ss_pred EEEEceeecCHHHHHHHhCCCCcCchHHHHHHHHHHhhhcCCCChhhhhcccc-cceEEEEEE
Q 029384 77 FCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLS-GYFAFIVYD 138 (194)
Q Consensus 77 ~~vFNGeIyN~~eLr~q~G~~kt~sdtevileaY~~~~drGPyp~~~~l~~L~-GmFAFvIyD 138 (194)
++++-=+|.|+.++++.+|... . .+++....+.+.+.-+ ..+++-++. +.|++++-+
T Consensus 32 ~~l~~i~i~~~~~i~~~~g~~~-~--~~~l~~~~~~l~~~~~--~~~~~~~~~~~~f~~l~~~ 89 (158)
T cd01949 32 LALLLIDIDHFKQINDTYGHAA-G--DEVLKEVAERLRSSLR--ESDLVARLGGDEFAILLPG 89 (158)
T ss_pred EEEEEEEchhhhHHHHhhChHh-H--HHHHHHHHHHHHHhCC--CCCEEEEecCCeEEEEeCC
Confidence 4444568999999999999732 1 2233344444332221 124555555 578888753
No 70
>cd02056 alpha-1-antitrypsin_like alpha-1-antitrypsin_like. This family contains a variety of different members of clade A of the serpin superfamily. They include the classical serine proteinase inhibitors, alpha-1-antitrypsin and alpha-1-antichymotrypsin, protein C inhibitor, kallistatin, and noninhibitory serpins, like corticosteroid and thyroxin binding globulins. In general, SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones. Serpins are of medical interest because mutants have been associated with blood clotting disorders, emphysema, cirrhosis, and dementia.
Probab=21.14 E-value=97 Score=27.58 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=16.5
Q ss_pred ccccceEEEEEECCCCe-EEEEe
Q 029384 127 HLSGYFAFIVYDKSTST-LTNLV 148 (194)
Q Consensus 127 ~L~GmFAFvIyD~~~~~-lf~AR 148 (194)
..+=-|.|+|.|+.++. ||++|
T Consensus 338 ~~drPF~f~I~~~~t~~iLF~G~ 360 (361)
T cd02056 338 KFNRPFLLLIFDRTTESILFLGK 360 (361)
T ss_pred EEeCCEEEEEEECCCCcEEEEEe
Confidence 34668999999998876 56554
No 71
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=21.02 E-value=91 Score=28.94 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=26.4
Q ss_pred cCchHHHHHHHHHHhhh-----cCCCChhhhh-cccccceEEE
Q 029384 99 SANEVILVIEAYKALRD-----RAPYPPNHVV-GHLSGYFAFI 135 (194)
Q Consensus 99 t~sdtevileaY~~~~d-----rGPyp~~~~l-~~L~GmFAFv 135 (194)
++-|.++|+-|.++++. .||||+|-+. +..+|.|-.+
T Consensus 217 G~EE~~iI~PAi~~~~~~Gi~v~GP~paDt~F~~~~~~~~D~v 259 (329)
T PRK01909 217 GREEIDVIEPALARARAAGIDARGPYPADTLFQPRYLEDADCV 259 (329)
T ss_pred cHHHHHHHHHHHHHHHHCCCCccCCCCchhhcccccccCCCEE
Confidence 47789999999998764 4799998644 3445655443
No 72
>cd02057 maspin_like Maspin (mammary serine proteinase inhibitor), a member of the serpin superfamily, with a multitude of effects on cells and tissues at an assortment of developmental stages. Maspin has tumor suppressing activity against breast and prostate cancer. In general, SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones.
Probab=20.48 E-value=1.1e+02 Score=27.67 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=16.5
Q ss_pred cccceEEEEEECCCCeE-EEEe
Q 029384 128 LSGYFAFIVYDKSTSTL-TNLV 148 (194)
Q Consensus 128 L~GmFAFvIyD~~~~~l-f~AR 148 (194)
.+=-|.|+|+|+.++.+ |++|
T Consensus 347 ~nrPF~f~I~d~~t~~iLF~G~ 368 (372)
T cd02057 347 ADHPFIFIIRHNKTRNIIFFGR 368 (372)
T ss_pred eeCCEEEEEEECCCCeEEEEEE
Confidence 55679999999998865 6664
No 73
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.39 E-value=92 Score=27.28 Aligned_cols=32 Identities=6% Similarity=0.102 Sum_probs=23.0
Q ss_pred ceEEEEEECCCCeEEEEeccCCceeEEEEeeCCeEEE
Q 029384 131 YFAFIVYDKSTSTLTNLVRFLFIGESLLMDMLPLLMM 167 (194)
Q Consensus 131 mFAFvIyD~~~~~lf~ARDr~GiKPlyY~~~~~~l~F 167 (194)
.--|-|||.--++ |++ +.+|+||..-+-.+++
T Consensus 53 ~ikfeIWDTAGQE----Ry~-slapMYyRgA~AAivv 84 (200)
T KOG0092|consen 53 TIKFEIWDTAGQE----RYH-SLAPMYYRGANAAIVV 84 (200)
T ss_pred EEEEEEEEcCCcc----ccc-ccccceecCCcEEEEE
Confidence 5668999997665 434 7789999876665543
No 74
>cd02054 angiotensinogen Angiotensinogen is part of the renin-angiotensin system (RAS), which plays an important role in blood pressure regulation, renal haemodynamics, fluid and electrolyte homeostasis. It is also involved in normal and abnormal growth processes. The growth promoting actions of angiotensin have been shown in a variety of cells and tissues. This subgroup represents clade A8 of the serpin superfamily. In general, SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones.
Probab=20.25 E-value=1e+02 Score=27.97 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=17.5
Q ss_pred ccccceEEEEEECCCCe-EEEEe
Q 029384 127 HLSGYFAFIVYDKSTST-LTNLV 148 (194)
Q Consensus 127 ~L~GmFAFvIyD~~~~~-lf~AR 148 (194)
..+=-|.|+|+|+.++. ||++|
T Consensus 346 ~~drPF~f~I~d~~t~~iLF~G~ 368 (372)
T cd02054 346 TLNRPFLFAVYEANSNAILFLGR 368 (372)
T ss_pred EecCCEEEEEEECCCCcEEEEEE
Confidence 46778999999999876 57665
No 75
>cd02049 bacterial_SERPIN SERine Proteinase INhibitors (serpins), prokaryotic subgroup. Little information about specific functions is available for this subgroup, most likely they are inhibitory members of the serpin superfamily. In general, serpins exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors.
Probab=20.12 E-value=1.1e+02 Score=27.44 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=16.7
Q ss_pred ccccceEEEEEECCCCe-EEEEe
Q 029384 127 HLSGYFAFIVYDKSTST-LTNLV 148 (194)
Q Consensus 127 ~L~GmFAFvIyD~~~~~-lf~AR 148 (194)
..+=-|.|+|+|+.++. ||++|
T Consensus 341 ~~nrPF~f~I~d~~t~~iLF~G~ 363 (364)
T cd02049 341 VADRPFLFAIRDNRTGSILFMGA 363 (364)
T ss_pred EeeCCEEEEEEECCCCcEEEEEe
Confidence 44567999999999875 56665
Done!