BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029385
(194 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4IR0|A Chain A, Crystal Structure Of Metallothiol Transferase Fosb 2 From
Bacillus Anthracis Str. Ames
pdb|4IR0|B Chain B, Crystal Structure Of Metallothiol Transferase Fosb 2 From
Bacillus Anthracis Str. Ames
Length = 148
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 36/136 (26%)
Query: 11 LKSLNHISLVCRSVEASLDFYQNVLG---FFPIRRPGSFDFDGAWLFNYGMGIHLLKSEE 67
L+ +NHI ++E S++FYQ +L R+ FD +G W+ L EE
Sbjct: 3 LQGINHICFSVSNLEKSIEFYQKILQAKLLVKGRKLAYFDLNGLWI--------ALNVEE 54
Query: 68 PDNLPKAGKNINPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINV--------- 118
++P+ I H +F N A +D++K + + +N+
Sbjct: 55 --DIPR--NEIKQSYTHXAFTVTNEA----------LDHLKEVLIQNDVNILPGRERDER 100
Query: 119 DQ--LFFHDPDGSMIE 132
DQ L+F DPDG E
Sbjct: 101 DQRSLYFTDPDGHKFE 116
>pdb|1NPB|A Chain A, Crystal Structure Of The Fosfomycin Resistance Protein
From Transposon Tn2921
pdb|1NPB|B Chain B, Crystal Structure Of The Fosfomycin Resistance Protein
From Transposon Tn2921
pdb|1NPB|C Chain C, Crystal Structure Of The Fosfomycin Resistance Protein
From Transposon Tn2921
pdb|1NPB|D Chain D, Crystal Structure Of The Fosfomycin Resistance Protein
From Transposon Tn2921
pdb|1NPB|E Chain E, Crystal Structure Of The Fosfomycin Resistance Protein
From Transposon Tn2921
pdb|1NPB|F Chain F, Crystal Structure Of The Fosfomycin Resistance Protein
From Transposon Tn2921
Length = 141
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 14/125 (11%)
Query: 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMGIHLLKSEEPDN 70
L+SLNH++L ++ S+ F+ +LG R + GA+L + + L E
Sbjct: 2 LQSLNHLTLAVSDLQKSVTFWHELLGLTLHARWNT----GAYLTCGDLWVCLSYDEARQY 57
Query: 71 LPKAGKNINPKDNHISFQC--ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDG 128
+P + H +F E+ + +RL++ + K EG +F DPDG
Sbjct: 58 VPPQESDY----THYAFTVAEEDFEPLSQRLEQAGVTIWKQNKSEGA----SFYFLDPDG 109
Query: 129 SMIEI 133
+E+
Sbjct: 110 HKLEL 114
>pdb|3ZW5|A Chain A, Crystal Structure Of The Human Glyoxalase
Domain-Containing Protein 5
pdb|3ZW5|B Chain B, Crystal Structure Of The Human Glyoxalase
Domain-Containing Protein 5
Length = 147
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 25/138 (18%)
Query: 9 LCLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMGIHLLKSEEP 68
+ ++ L+HI + +S++ + FY +LG + +F D L +G ++
Sbjct: 23 MLIRRLDHIVMTVKSIKDTTMFYSKILGMEVM----TFKEDRKAL-CFG--------DQK 69
Query: 69 DNLPKAGKNINPKDNH-ISFQCENMAIVERRLKEMKIDYVKS---RVEEGGI-------N 117
NL + GK PK H + + I E L+EM I ++K+ +EEG +
Sbjct: 70 FNLHEVGKEFEPKAAHPVPGSLDICLITEVPLEEM-IQHLKACDVPIEEGPVPRTGAKGP 128
Query: 118 VDQLFFHDPDGSMIEICN 135
+ ++F DPD ++IE+ N
Sbjct: 129 IMSIYFRDPDRNLIEVSN 146
>pdb|3GHJ|A Chain A, Crystal Structure From The Mobile Metagenome Of Halifax
Harbour Sewage Outfall: Integron Cassette Protein
Hfx_cass4
Length = 141
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 16/130 (12%)
Query: 8 PLCLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNY--GMGIHLLKS 65
P +K L +++ +++E S FY +LGF G D W F + G ++
Sbjct: 23 PXNIKGLFEVAVKVKNLEKSSQFYTEILGF----EAGLLDSARRWNFLWVSGRAGXVVLQ 78
Query: 66 EEPDNLPKAGKNINPKDNHISFQCENMAIVE-RRLKEMKIDYVKSRVEEGGINVDQLFFH 124
EE +N + H SF+ E I ++ E K V V + L+F
Sbjct: 79 EEKENW---------QQQHFSFRVEKSEIEPLKKALESKGVSVHGPVNQEWXQAVSLYFA 129
Query: 125 DPDGSMIEIC 134
DP+G +E
Sbjct: 130 DPNGHALEFT 139
>pdb|1FRO|A Chain A, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|B Chain B, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|C Chain C, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|D Chain D, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1QIN|A Chain A, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIN|B Chain B, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIP|A Chain A, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|B Chain B, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|C Chain C, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|D Chain D, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
Length = 183
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 27/147 (18%)
Query: 14 LNHISLVCRSVEASLDFYQNVLGF-------FPIRR--------------PGSFDFDGAW 52
L L + + SLDFY VLG FPI + P D AW
Sbjct: 31 LQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAW 90
Query: 53 LFNYGMGIHL---LKSEEPDNLPKAGKNINPKD-NHISFQCENMAIVERRLKEMKIDYVK 108
+ + L +E+ + N +P+ HI ++ +R +E+ + +VK
Sbjct: 91 ALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVK 150
Query: 109 SRVEEGGINVDQLFFHDPDGSMIEICN 135
+ ++G + F DPDG IEI N
Sbjct: 151 -KPDDGKMK-GLAFIQDPDGYWIEILN 175
>pdb|3VW9|A Chain A, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
pdb|3VW9|B Chain B, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
Length = 187
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 27/147 (18%)
Query: 14 LNHISLVCRSVEASLDFYQNVLGF-------FPIRR--------------PGSFDFDGAW 52
L L + + SLDFY VLG FPI + P D AW
Sbjct: 35 LQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAW 94
Query: 53 LFNYGMGIHL---LKSEEPDNLPKAGKNINPKD-NHISFQCENMAIVERRLKEMKIDYVK 108
+ + L +E+ + N +P+ HI ++ +R +E+ + +VK
Sbjct: 95 ALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVK 154
Query: 109 SRVEEGGINVDQLFFHDPDGSMIEICN 135
+ ++G + F DPDG IEI N
Sbjct: 155 -KPDDGKMK-GLAFIQDPDGYWIEILN 179
>pdb|2ZA0|A Chain A, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
pdb|2ZA0|B Chain B, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
Length = 184
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 60/154 (38%), Gaps = 27/154 (17%)
Query: 14 LNHISLVCRSVEASLDFYQNVLGF-------FPIRR--------------PGSFDFDGAW 52
L L + + SLDFY VLG FP + P AW
Sbjct: 32 LQQTMLRIKDPKKSLDFYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIPKDKSEKTAW 91
Query: 53 LFNYGMGIHL---LKSEEPDNLPKAGKNINPKD-NHISFQCENMAIVERRLKEMKIDYVK 108
F+ + L +E+ + N +P+ HI ++ +R +E+ + +VK
Sbjct: 92 TFSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVK 151
Query: 109 SRVEEGGINVDQLFFHDPDGSMIEICNCDVLPVV 142
+ ++G + F DPDG IEI N + + +
Sbjct: 152 -KPDDGKMK-GLAFIQDPDGYWIEILNPNKIATI 183
>pdb|3HNQ|A Chain A, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|B Chain B, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|C Chain C, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|D Chain D, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
Length = 144
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 9/129 (6%)
Query: 10 CLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMGIHLLKSEEPD 69
+ ++H+ L + ++ FY+ VLGF + +F + L I+ L +E +
Sbjct: 20 IIDRIDHLVLTVSDISTTIRFYEEVLGFSAV----TFKQNRKALIFGAQKIN-LHQQEXE 74
Query: 70 NLPKAGKNINPKDNHISFQCEN-MAIVERRLKEMKIDYVKSRVEEGGIN--VDQLFFHDP 126
PKA + P + F + V + + I V+ VE G + ++ DP
Sbjct: 75 FEPKASRP-TPGSADLCFITSTPINDVVSEILQAGISIVEGPVERTGATGEIXSIYIRDP 133
Query: 127 DGSMIEICN 135
DG++IEI
Sbjct: 134 DGNLIEISQ 142
>pdb|1BH5|A Chain A, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|B Chain B, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|C Chain C, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|D Chain D, Human Glyoxalase I Q33e, E172q Double Mutant
Length = 183
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 58/147 (39%), Gaps = 27/147 (18%)
Query: 14 LNHISLVCRSVEASLDFYQNVLGF-------FPIRR--------------PGSFDFDGAW 52
L L + + SLDFY VLG FPI + P D AW
Sbjct: 31 LQETMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAW 90
Query: 53 LFNYGMGIHL---LKSEEPDNLPKAGKNINPKD-NHISFQCENMAIVERRLKEMKIDYVK 108
+ + L +E+ + N +P+ HI ++ +R +E+ + +VK
Sbjct: 91 ALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVK 150
Query: 109 SRVEEGGINVDQLFFHDPDGSMIEICN 135
+ ++G + F DPDG I+I N
Sbjct: 151 -KPDDGKMK-GLAFIQDPDGYWIQILN 175
>pdb|3HUH|A Chain A, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|B Chain B, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|C Chain C, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|D Chain D, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
Length = 152
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 11/136 (8%)
Query: 3 ESVENPLCLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMGIHL 62
ES++ + + ++H+ L + ++ FY+ VLGF + +F + L I+
Sbjct: 15 ESIQ--MIIDRIDHLVLTVSDISTTIRFYEEVLGFSAV----TFKQNRKALIFGAQKIN- 67
Query: 63 LKSEEPDNLPKAGKNINPKDNHISFQCEN-MAIVERRLKEMKIDYVKSRVEEGGIN--VD 119
L +E + PKA + P + F + V + + I V+ VE G +
Sbjct: 68 LHQQEMEFEPKASRP-TPGSADLCFITSTPINDVVSEILQAGISIVEGPVERTGATGEIM 126
Query: 120 QLFFHDPDGSMIEICN 135
++ DPDG++IEI
Sbjct: 127 SIYIRDPDGNLIEISQ 142
>pdb|3EY7|A Chain A, Structure From The Mobile Metagenome Of V. Cholerae.
Integron Cassette Protein Vch_cass1
pdb|3EY7|B Chain B, Structure From The Mobile Metagenome Of V. Cholerae.
Integron Cassette Protein Vch_cass1
Length = 133
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/136 (19%), Positives = 55/136 (40%), Gaps = 25/136 (18%)
Query: 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMG-IHLLKSEEPD 69
+ L+H+ L + + +FY+ VLG + ++G G I L +
Sbjct: 8 ISHLDHLVLTVADIPTTTNFYEKVLGXKAV--------------SFGAGRIALEFGHQKI 53
Query: 70 NLPKAGKNINPKDNHISFQCENMAIVE--------RRLKEMKIDYVKSRVEEGGIN--VD 119
NL + G PK ++ ++ + + +++ + + V+ G +
Sbjct: 54 NLHQLGNEFEPKAQNVRVGSADLCFITDTVLSDAXKHVEDQGVTIXEGPVKRTGAQGAIT 113
Query: 120 QLFFHDPDGSMIEICN 135
+F DPDG++IE+
Sbjct: 114 SFYFRDPDGNLIEVST 129
>pdb|1LQK|A Chain A, High Resolution Structure Of Fosfomycin Resistance Protein
A (Fosa)
pdb|1LQK|B Chain B, High Resolution Structure Of Fosfomycin Resistance Protein
A (Fosa)
pdb|1LQO|A Chain A, Crystal Strutcure Of The Fosfomycin Resistance Protein A
(Fosa) Containing Bound Thallium Cations
pdb|1LQO|B Chain B, Crystal Strutcure Of The Fosfomycin Resistance Protein A
(Fosa) Containing Bound Thallium Cations
pdb|1LQP|A Chain A, Crystal Structure Of The Fosfomycin Resistance Protein
(Fosa) Containing Bound Substrate
pdb|1LQP|B Chain B, Crystal Structure Of The Fosfomycin Resistance Protein
(Fosa) Containing Bound Substrate
pdb|1NKI|A Chain A, Crystal Strucure Of The Fosfomycin Resistance Protein A
(Fosa) Containing Bound Phosphonoformate
pdb|1NKI|B Chain B, Crystal Strucure Of The Fosfomycin Resistance Protein A
(Fosa) Containing Bound Phosphonoformate
pdb|1NNR|A Chain A, Crystal Structure Of A Probable Fosfomycin Resistance
Protein (Pa1129) From Pseudomonas Aeruginosa With
Sulfate Present In The Active Site
pdb|1NNR|B Chain B, Crystal Structure Of A Probable Fosfomycin Resistance
Protein (Pa1129) From Pseudomonas Aeruginosa With
Sulfate Present In The Active Site
Length = 135
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 15/129 (11%)
Query: 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMG-IHLLKSEEPD 69
L LNH++L + AS+ FY+++LGF R +D GA+L +G + L S EP
Sbjct: 2 LTGLNHLTLAVADLPASIAFYRDLLGF---RLEARWD-QGAYL---ELGSLWLCLSREPQ 54
Query: 70 NLPKAGKNINPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGS 129
G + + A +L+ + K EG D +F DPDG
Sbjct: 55 ---YGGPAADYTHYAFGIAAADFARFAAQLRAHGVREWKQNRSEG----DSFYFLDPDGH 107
Query: 130 MIEICNCDV 138
+E D+
Sbjct: 108 RLEAHVGDL 116
>pdb|3RMU|A Chain A, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|B Chain B, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|C Chain C, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|D Chain D, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
Length = 134
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 8/130 (6%)
Query: 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMGIHLLKSEEPDN 70
L LNH+++ +E + FY+N+LG + G + +G ++ P
Sbjct: 3 LGRLNHVAIAVPDLEKAAAFYKNILG-AQVSEAVPLPEHGVSVVFVNLGNTKMELLHPLG 61
Query: 71 L--PKAG---KNINPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHD 125
L P AG KN +HI + +N+ LK+ KI + V+ G +F H
Sbjct: 62 LDSPIAGFLQKNKAGGMHHICIEVDNINAAVMDLKKKKIRSLSEEVKIGAHGKPVIFLHP 121
Query: 126 PD--GSMIEI 133
D G ++E+
Sbjct: 122 KDCGGVLVEL 131
>pdb|3L7T|A Chain A, Crystal Structure Of Smu.1112c
pdb|3L7T|B Chain B, Crystal Structure Of Smu.1112c
pdb|3L7T|C Chain C, Crystal Structure Of Smu.1112c
pdb|3L7T|D Chain D, Crystal Structure Of Smu.1112c
Length = 134
Score = 33.1 bits (74), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIR---RPGSFDF 48
LK+++H++L+ + S +FY N LGF IR RP D+
Sbjct: 3 LKAVHHVALIVSDYDKSYEFYVNQLGFEVIRENHRPKRHDY 43
>pdb|3EY8|A Chain A, Structure From The Mobile Metagenome Of V. Pseudocholerae.
Vpc_cass1
pdb|3EY8|B Chain B, Structure From The Mobile Metagenome Of V. Pseudocholerae.
Vpc_cass1
Length = 133
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 25/136 (18%)
Query: 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMG-IHLLKSEEPD 69
+ L+H+ L + + FY+ VLG + ++G G I L +
Sbjct: 8 ISHLDHLVLTVADIPTTTKFYEKVLGXKAV--------------SFGSGRIALEFGHQKI 53
Query: 70 NLPKAGKNINPKDNHISFQCENMAIVERRLKEMKIDYVKSR---VEEGGIN-------VD 119
NL + G PK ++ ++ + +YV+++ + EG + +
Sbjct: 54 NLHQLGHEFEPKAQNVRTGSADLCFITDIDLSDAXEYVENQGVVIXEGPVKRTGAQGAIT 113
Query: 120 QLFFHDPDGSMIEICN 135
+F DPDG++IE+
Sbjct: 114 SFYFRDPDGNLIEVST 129
>pdb|3OAJ|A Chain A, Crystal Structure Of Putative Dioxygenase From Bacillus
Subtilis Subsp. Subtilis Str. 168
pdb|3OAJ|B Chain B, Crystal Structure Of Putative Dioxygenase From Bacillus
Subtilis Subsp. Subtilis Str. 168
Length = 335
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 19/132 (14%)
Query: 13 SLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMGIHLLKSEEPDNL- 71
++HI+ + + + DFY VLG +++ +FD G + +G + +P +
Sbjct: 8 GIHHITAIVGHPQENTDFYAGVLGLRLVKQTVNFDDPGTYHLYFGN-----EGGKPGTII 62
Query: 72 ---PKAGKNINP-KDNHISFQC-----ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLF 122
P AG D + MA E+RL++ + Y K +E G +
Sbjct: 63 TFFPWAGARQGVIGDGQVGVTSYVVPKGAMAFWEKRLEKFNVPYTK--IERFGEQYVE-- 118
Query: 123 FHDPDGSMIEIC 134
F DP G +EI
Sbjct: 119 FDDPHGLHLEIV 130
>pdb|2P25|A Chain A, The Crystal Structure Of The Glyoxalase Family Protein
From Enterococcus Faecalis
Length = 126
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 13/129 (10%)
Query: 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIR---RPGSFDFDGAWLFNYGMGIHLLKSEE 67
K ++H+++ + +A+ +FY LGF +R RP D + +G L+
Sbjct: 3 FKEIHHVAINASNYQATKNFYVEKLGFEVLRENHRPEKNDIK----LDLKLGSQELEIFI 58
Query: 68 PDNLPKAGKNINPKD---NHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFH 124
D P + P+ H++F+ E++ V L E I+ RV++ FF
Sbjct: 59 SDQFP--ARPSYPEALGLRHLAFKVEHIEEVIAFLNEQGIETEPLRVDD-FTGKKXTFFF 115
Query: 125 DPDGSMIEI 133
DPDG +E+
Sbjct: 116 DPDGLPLEL 124
>pdb|2P7Q|A Chain A, Crystal Structure Of E126q Mutant Of Genomically Encoded
Fosfomycin Resistance Protein, Fosx, From Listeria
Monocytogenes Complexed With Mn(Ii) And
1s,2s-Dihydroxypropylphosphonic Acid
pdb|2P7Q|B Chain B, Crystal Structure Of E126q Mutant Of Genomically Encoded
Fosfomycin Resistance Protein, Fosx, From Listeria
Monocytogenes Complexed With Mn(Ii) And
1s,2s-Dihydroxypropylphosphonic Acid
pdb|2P7Q|C Chain C, Crystal Structure Of E126q Mutant Of Genomically Encoded
Fosfomycin Resistance Protein, Fosx, From Listeria
Monocytogenes Complexed With Mn(Ii) And
1s,2s-Dihydroxypropylphosphonic Acid
pdb|2P7Q|D Chain D, Crystal Structure Of E126q Mutant Of Genomically Encoded
Fosfomycin Resistance Protein, Fosx, From Listeria
Monocytogenes Complexed With Mn(Ii) And
1s,2s-Dihydroxypropylphosphonic Acid
pdb|2P7Q|E Chain E, Crystal Structure Of E126q Mutant Of Genomically Encoded
Fosfomycin Resistance Protein, Fosx, From Listeria
Monocytogenes Complexed With Mn(Ii) And
1s,2s-Dihydroxypropylphosphonic Acid
pdb|2P7Q|F Chain F, Crystal Structure Of E126q Mutant Of Genomically Encoded
Fosfomycin Resistance Protein, Fosx, From Listeria
Monocytogenes Complexed With Mn(Ii) And
1s,2s-Dihydroxypropylphosphonic Acid
Length = 133
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 19/131 (14%)
Query: 10 CLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGA---WLFNYGMGIHLLKSE 66
+ L+HI+L+ + + + F QN+ I G F + + G+ I ++
Sbjct: 1 MISGLSHITLIVKDLNKTTAFLQNIFNAEEIYSSGDKTFSLSKEKFFLIAGLWICIM--- 57
Query: 67 EPDNLPKAGKNINPKDNHISFQCENMAIVE--RRLKEMKIDYV--KSRVEEGGINVDQLF 122
E D+L + NHI+FQ ++ + E R+K + ++ + RV+ G ++ +
Sbjct: 58 EGDSLQERTY------NHIAFQIQSEEVDEYTERIKALGVEMKPERPRVQGEGRSI---Y 108
Query: 123 FHDPDGSMIEI 133
F+D D + E+
Sbjct: 109 FYDFDNHLFEL 119
>pdb|2P7K|A Chain A, Crystal Structure Of Genomically Encoded Fosfomycin
Resistance Protein, Fosx, From Listeria Monocytogenes
(Hexagonal Form)
pdb|2P7K|B Chain B, Crystal Structure Of Genomically Encoded Fosfomycin
Resistance Protein, Fosx, From Listeria Monocytogenes
(Hexagonal Form)
pdb|2P7L|A Chain A, Crystal Structure Of Monoclinic Form Of Genomically
Encoded Fosfomycin Resistance Protein, Fosx, From
Listeria Monocytogenes At Ph 5.75
pdb|2P7L|B Chain B, Crystal Structure Of Monoclinic Form Of Genomically
Encoded Fosfomycin Resistance Protein, Fosx, From
Listeria Monocytogenes At Ph 5.75
pdb|2P7L|C Chain C, Crystal Structure Of Monoclinic Form Of Genomically
Encoded Fosfomycin Resistance Protein, Fosx, From
Listeria Monocytogenes At Ph 5.75
pdb|2P7L|D Chain D, Crystal Structure Of Monoclinic Form Of Genomically
Encoded Fosfomycin Resistance Protein, Fosx, From
Listeria Monocytogenes At Ph 5.75
pdb|2P7L|E Chain E, Crystal Structure Of Monoclinic Form Of Genomically
Encoded Fosfomycin Resistance Protein, Fosx, From
Listeria Monocytogenes At Ph 5.75
pdb|2P7L|F Chain F, Crystal Structure Of Monoclinic Form Of Genomically
Encoded Fosfomycin Resistance Protein, Fosx, From
Listeria Monocytogenes At Ph 5.75
pdb|2P7M|A Chain A, Crystal Structure Of Monoclinic Form Of Genomically
Encoded Fosfomycin Resistance Protein, Fosx, From
Listeria Monocytogenes At Ph 6.5
pdb|2P7M|B Chain B, Crystal Structure Of Monoclinic Form Of Genomically
Encoded Fosfomycin Resistance Protein, Fosx, From
Listeria Monocytogenes At Ph 6.5
pdb|2P7M|C Chain C, Crystal Structure Of Monoclinic Form Of Genomically
Encoded Fosfomycin Resistance Protein, Fosx, From
Listeria Monocytogenes At Ph 6.5
pdb|2P7M|D Chain D, Crystal Structure Of Monoclinic Form Of Genomically
Encoded Fosfomycin Resistance Protein, Fosx, From
Listeria Monocytogenes At Ph 6.5
pdb|2P7M|E Chain E, Crystal Structure Of Monoclinic Form Of Genomically
Encoded Fosfomycin Resistance Protein, Fosx, From
Listeria Monocytogenes At Ph 6.5
pdb|2P7M|F Chain F, Crystal Structure Of Monoclinic Form Of Genomically
Encoded Fosfomycin Resistance Protein, Fosx, From
Listeria Monocytogenes At Ph 6.5
pdb|2P7O|A Chain A, Crystal Structure Of Genomically Encoded Fosfomycin
Resistance Protein, Fosx, From Listeria Monocytogenes
(Tetragonal Form)
pdb|2P7O|B Chain B, Crystal Structure Of Genomically Encoded Fosfomycin
Resistance Protein, Fosx, From Listeria Monocytogenes
(Tetragonal Form)
pdb|2P7P|A Chain A, Crystal Structure Of Genomically Encoded Fosfomycin
Resistance Protein, Fosx, From Listeria Monocytogenes
Complexed With Mn(Ii) And Sulfate Ion
pdb|2P7P|B Chain B, Crystal Structure Of Genomically Encoded Fosfomycin
Resistance Protein, Fosx, From Listeria Monocytogenes
Complexed With Mn(Ii) And Sulfate Ion
pdb|2P7P|C Chain C, Crystal Structure Of Genomically Encoded Fosfomycin
Resistance Protein, Fosx, From Listeria Monocytogenes
Complexed With Mn(Ii) And Sulfate Ion
pdb|2P7P|D Chain D, Crystal Structure Of Genomically Encoded Fosfomycin
Resistance Protein, Fosx, From Listeria Monocytogenes
Complexed With Mn(Ii) And Sulfate Ion
pdb|2P7P|E Chain E, Crystal Structure Of Genomically Encoded Fosfomycin
Resistance Protein, Fosx, From Listeria Monocytogenes
Complexed With Mn(Ii) And Sulfate Ion
pdb|2P7P|F Chain F, Crystal Structure Of Genomically Encoded Fosfomycin
Resistance Protein, Fosx, From Listeria Monocytogenes
Complexed With Mn(Ii) And Sulfate Ion
Length = 133
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 19/131 (14%)
Query: 10 CLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGA---WLFNYGMGIHLLKSE 66
+ L+HI+L+ + + + F QN+ I G F + + G+ I ++
Sbjct: 1 MISGLSHITLIVKDLNKTTAFLQNIFNAEEIYSSGDKTFSLSKEKFFLIAGLWICIM--- 57
Query: 67 EPDNLPKAGKNINPKDNHISFQCENMAIVE--RRLKEMKIDYV--KSRVEEGGINVDQLF 122
E D+L + NHI+FQ ++ + E R+K + ++ + RV+ G ++ +
Sbjct: 58 EGDSLQERTY------NHIAFQIQSEEVDEYTERIKALGVEMKPERPRVQGEGRSI---Y 108
Query: 123 FHDPDGSMIEI 133
F+D D + E+
Sbjct: 109 FYDFDNHLFEL 119
>pdb|1F9Z|A Chain A, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1F9Z|B Chain B, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1FA5|A Chain A, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA5|B Chain B, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|A Chain A, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|B Chain B, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|A Chain A, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|B Chain B, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA8|A Chain A, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
pdb|1FA8|B Chain B, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
Length = 135
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 1/122 (0%)
Query: 14 LNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLF-NYGMGIHLLKSEEPDNLP 72
L H L ++ S+DFY VLG +R + ++ + F YG E N
Sbjct: 3 LLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWG 62
Query: 73 KAGKNINPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIE 132
+ HI+ +N A ++++ + + G F DPDG IE
Sbjct: 63 VDKYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIE 122
Query: 133 IC 134
+
Sbjct: 123 LI 124
>pdb|2VTB|B Chain B, Structure Of Cryptochrome 3 - Dna Complex
Length = 525
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 54 FNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCENMAIVERRLKEMK 103
+ YG G++ + + ++PK +N +P+ +++F + + RRL + K
Sbjct: 433 WTYGAGVNDPREDRYFSIPKQAQNYDPEGEYVAFWLQQL----RRLPKEK 478
>pdb|1ZSW|A Chain A, Crystal Structure Of Bacillus Cereus Metallo Protein
From Glyoxalase Family
Length = 338
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIR 41
+K +HIS+V ++ + FY+NVLG ++
Sbjct: 28 IKGHHHISMVTKNANENNHFYKNVLGLRRVK 58
>pdb|1F1R|A Chain A, Crystal Structure Of Homoprotocatechuate 2,3-Dioxygenase
From Arthrobacter Globiformis (Native, Non-Cryo)
pdb|1F1R|B Chain B, Crystal Structure Of Homoprotocatechuate 2,3-Dioxygenase
From Arthrobacter Globiformis (Native, Non-Cryo)
pdb|1F1U|A Chain A, Crystal Structure Of Homoprotocatechuate 2,3-dioxygenase
From Arthrobacter Globiformis (native, Low Temperature)
pdb|1F1U|B Chain B, Crystal Structure Of Homoprotocatechuate 2,3-dioxygenase
From Arthrobacter Globiformis (native, Low Temperature)
pdb|1F1V|A Chain A, Anaerobic Substrate Complex Of Homoprotocatechuate
2,3-Dioxygenase From Arthrobacter Globiformis. (Complex
With 3,4- Dihydroxyphenylacetate)
pdb|1F1V|B Chain B, Anaerobic Substrate Complex Of Homoprotocatechuate
2,3-Dioxygenase From Arthrobacter Globiformis. (Complex
With 3,4- Dihydroxyphenylacetate)
Length = 323
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 79 NPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEG----GI-NVDQLFFHDPDGSMIEI 133
P+ +H++F + + +M + R+E G G+ N L+ DPDG IEI
Sbjct: 209 GPRMHHVAFATHEKHNIIQICDKMGALRISDRIERGPGRHGVSNAFYLYILDPDGHRIEI 268
Query: 134 CNCD 137
D
Sbjct: 269 YTQD 272
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,752,839
Number of Sequences: 62578
Number of extensions: 233876
Number of successful extensions: 438
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 419
Number of HSP's gapped (non-prelim): 25
length of query: 194
length of database: 14,973,337
effective HSP length: 94
effective length of query: 100
effective length of database: 9,091,005
effective search space: 909100500
effective search space used: 909100500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)