Query 029385
Match_columns 194
No_of_seqs 164 out of 1649
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 12:04:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029385.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029385hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11478 putative lyase; Provi 99.9 3E-20 6.4E-25 135.3 15.8 125 8-135 1-128 (129)
2 COG2514 Predicted ring-cleavag 99.9 1.6E-20 3.5E-25 150.3 13.9 149 11-171 8-159 (265)
3 cd08353 Glo_EDI_BRP_like_7 Thi 99.8 3.4E-19 7.5E-24 132.1 15.8 124 11-136 1-141 (142)
4 cd07243 2_3_CTD_C C-terminal d 99.8 8.4E-19 1.8E-23 131.1 15.0 118 9-136 2-125 (143)
5 cd07253 Glo_EDI_BRP_like_2 Thi 99.8 2.1E-18 4.6E-23 123.9 15.1 122 11-136 1-125 (125)
6 cd08342 HPPD_N_like N-terminal 99.8 1.3E-18 2.9E-23 128.6 14.1 123 14-137 1-124 (136)
7 cd08352 Glo_EDI_BRP_like_1 Thi 99.8 2.1E-18 4.6E-23 123.9 14.6 121 11-135 1-125 (125)
8 TIGR00068 glyox_I lactoylgluta 99.8 1.9E-18 4.2E-23 129.8 14.9 127 9-137 13-142 (150)
9 cd08364 FosX FosX, a fosfomyci 99.8 2.5E-18 5.4E-23 126.4 15.0 116 11-136 2-122 (131)
10 TIGR03645 glyox_marine lactoyl 99.8 2.5E-18 5.3E-23 131.2 15.4 127 11-137 2-152 (162)
11 PLN03042 Lactoylglutathione ly 99.8 4.7E-18 1E-22 132.2 16.7 128 12-141 26-179 (185)
12 cd07255 Glo_EDI_BRP_like_12 Th 99.8 7.9E-18 1.7E-22 121.7 16.2 119 12-139 1-122 (125)
13 cd08347 PcpA_C_like C-terminal 99.8 4.1E-18 8.9E-23 129.4 15.3 115 13-137 1-121 (157)
14 PRK04101 fosfomycin resistance 99.8 3.8E-18 8.3E-23 126.6 14.8 118 10-137 1-120 (139)
15 PLN02367 lactoylglutathione ly 99.8 8.5E-18 1.8E-22 134.0 16.5 125 13-139 75-225 (233)
16 cd07241 Glo_EDI_BRP_like_3 Thi 99.8 5.6E-18 1.2E-22 122.0 14.1 119 13-134 1-125 (125)
17 cd09013 BphC-JF8_N_like N-term 99.8 4.9E-18 1.1E-22 122.7 13.7 113 9-136 2-118 (121)
18 cd07265 2_3_CTD_N N-terminal d 99.8 6.8E-18 1.5E-22 122.0 14.4 115 11-137 2-120 (122)
19 cd09011 Glo_EDI_BRP_like_23 Th 99.8 6.5E-18 1.4E-22 121.9 14.0 117 13-136 2-119 (120)
20 cd07245 Glo_EDI_BRP_like_9 Thi 99.8 6E-18 1.3E-22 119.0 13.1 113 14-133 1-114 (114)
21 cd08361 PpCmtC_N N-terminal do 99.8 9E-18 1.9E-22 122.3 13.5 113 9-136 2-119 (124)
22 cd07252 BphC1-RGP6_N_like N-te 99.8 1E-17 2.2E-22 121.1 13.6 112 12-137 1-118 (120)
23 cd07267 THT_Oxygenase_N N-term 99.8 2.6E-17 5.6E-22 117.8 15.0 110 11-136 1-110 (113)
24 cd08362 BphC5-RrK37_N_like N-t 99.8 1.7E-17 3.6E-22 119.2 13.8 113 11-136 1-117 (120)
25 cd07233 Glyoxalase_I Glyoxalas 99.8 2E-17 4.2E-22 118.7 13.8 115 14-134 1-121 (121)
26 cd08363 FosB FosB, a fosfomyci 99.8 1.5E-17 3.3E-22 122.3 13.3 114 14-137 1-116 (131)
27 TIGR03081 metmalonyl_epim meth 99.8 7E-18 1.5E-22 122.2 11.3 123 13-135 1-128 (128)
28 cd07247 SgaA_N_like N-terminal 99.8 4.3E-17 9.3E-22 116.1 15.2 113 14-135 1-114 (114)
29 cd08360 MhqB_like_C C-terminal 99.8 3.8E-17 8.3E-22 120.4 14.7 117 12-138 2-122 (134)
30 cd07240 ED_TypeI_classII_N N-t 99.8 4.5E-17 9.8E-22 116.1 14.2 110 12-136 1-114 (117)
31 cd07266 HPCD_N_class_II N-term 99.8 3.7E-17 8E-22 117.8 13.6 112 10-136 1-118 (121)
32 cd07242 Glo_EDI_BRP_like_6 Thi 99.8 7.7E-17 1.7E-21 117.1 15.3 118 13-135 1-127 (128)
33 cd07263 Glo_EDI_BRP_like_16 Th 99.8 5.9E-17 1.3E-21 115.2 14.3 114 16-135 1-119 (119)
34 PLN02300 lactoylglutathione ly 99.8 3.7E-17 8.1E-22 135.3 15.1 128 9-141 20-153 (286)
35 cd09014 BphC-JF8_C_like C-term 99.7 8.1E-17 1.8E-21 123.3 15.6 122 9-137 2-128 (166)
36 cd07257 THT_oxygenase_C The C- 99.7 2.5E-17 5.4E-22 124.4 11.7 121 13-138 1-127 (153)
37 cd08351 ChaP_like ChaP, an enz 99.7 1E-16 2.2E-21 116.2 14.4 110 12-136 3-121 (123)
38 cd08345 Fosfomycin_RP Fosfomyc 99.7 7.6E-17 1.6E-21 114.5 12.8 109 16-136 1-111 (113)
39 PRK06724 hypothetical protein; 99.7 7.1E-17 1.5E-21 118.6 13.0 111 11-136 5-123 (128)
40 cd08346 PcpA_N_like N-terminal 99.7 1.4E-16 3.1E-21 114.6 13.4 116 13-134 1-126 (126)
41 cd07249 MMCE Methylmalonyl-CoA 99.7 8.8E-17 1.9E-21 116.1 12.2 121 14-135 1-128 (128)
42 cd07239 BphC5-RK37_C_like C-te 99.7 1.7E-16 3.7E-21 118.7 14.1 113 12-137 3-118 (144)
43 cd07237 BphC1-RGP6_C_like C-te 99.7 1.3E-16 2.7E-21 120.7 13.5 118 11-137 7-132 (154)
44 cd08359 Glo_EDI_BRP_like_22 Th 99.7 2.8E-16 6.1E-21 112.7 14.7 114 16-135 4-119 (119)
45 cd07244 FosA FosA, a Fosfomyci 99.7 1.3E-16 2.9E-21 115.3 13.0 108 13-136 1-110 (121)
46 cd07264 Glo_EDI_BRP_like_15 Th 99.7 2.7E-16 5.9E-21 113.5 14.4 116 14-135 1-124 (125)
47 cd07256 HPCD_C_class_II C-term 99.7 2E-16 4.3E-21 120.4 14.3 117 12-138 2-125 (161)
48 PRK10291 glyoxalase I; Provisi 99.7 2E-16 4.4E-21 115.6 13.7 114 18-137 1-121 (129)
49 cd08357 Glo_EDI_BRP_like_18 Th 99.7 2.5E-16 5.4E-21 113.6 13.9 116 16-135 2-124 (125)
50 cd08348 BphC2-C3-RGP6_C_like T 99.7 5.2E-16 1.1E-20 113.7 15.4 116 13-138 1-122 (134)
51 PF00903 Glyoxalase: Glyoxalas 99.7 6.5E-17 1.4E-21 116.2 10.4 121 13-133 1-128 (128)
52 cd07258 PpCmtC_C C-terminal do 99.7 1.8E-16 3.9E-21 118.3 12.9 112 15-138 1-116 (141)
53 cd07235 MRD Mitomycin C resist 99.7 4.9E-16 1.1E-20 112.0 13.2 116 14-134 1-121 (122)
54 cd08344 MhqB_like_N N-terminal 99.7 4.9E-16 1.1E-20 110.8 12.9 107 12-136 1-109 (112)
55 cd07262 Glo_EDI_BRP_like_19 Th 99.7 8E-16 1.7E-20 111.0 13.9 112 14-134 1-122 (123)
56 cd08354 Glo_EDI_BRP_like_13 Th 99.7 1.3E-15 2.9E-20 109.2 14.5 117 14-135 1-121 (122)
57 cd08355 Glo_EDI_BRP_like_14 Th 99.7 2.4E-15 5.1E-20 108.5 15.8 118 17-136 3-122 (122)
58 cd09012 Glo_EDI_BRP_like_24 Th 99.7 9.5E-16 2.1E-20 111.1 13.2 116 15-135 2-123 (124)
59 PF12681 Glyoxalase_2: Glyoxal 99.7 8.3E-16 1.8E-20 108.2 12.4 103 19-134 1-108 (108)
60 TIGR03211 catechol_2_3 catecho 99.7 7.5E-16 1.6E-20 128.2 14.1 121 7-136 139-265 (303)
61 cd07261 Glo_EDI_BRP_like_11 Th 99.7 1.6E-15 3.5E-20 108.0 13.9 109 17-135 2-114 (114)
62 cd07254 Glo_EDI_BRP_like_20 Th 99.7 2.1E-15 4.5E-20 108.5 14.5 111 15-136 3-117 (120)
63 cd08343 ED_TypeI_classII_C C-t 99.7 1.7E-15 3.8E-20 111.0 14.1 115 15-138 1-119 (131)
64 cd07238 Glo_EDI_BRP_like_5 Thi 99.7 2.8E-15 6.1E-20 106.5 14.6 106 16-136 3-111 (112)
65 cd08349 BLMA_like Bleomycin bi 99.7 2.5E-15 5.5E-20 106.1 14.1 110 17-135 2-112 (112)
66 cd07246 Glo_EDI_BRP_like_8 Thi 99.7 4.7E-15 1E-19 106.3 14.6 116 16-135 4-121 (122)
67 cd08350 BLMT_like BLMT, a bleo 99.7 4E-15 8.7E-20 107.3 14.1 107 16-135 5-118 (120)
68 cd06587 Glo_EDI_BRP_like This 99.7 4.4E-15 9.6E-20 103.1 12.8 112 16-133 1-112 (112)
69 cd08356 Glo_EDI_BRP_like_17 Th 99.6 4.3E-15 9.3E-20 106.5 12.7 106 16-135 4-113 (113)
70 TIGR03211 catechol_2_3 catecho 99.6 4.7E-15 1E-19 123.4 14.5 114 11-139 2-121 (303)
71 TIGR02295 HpaD 3,4-dihydroxyph 99.6 5.9E-15 1.3E-19 122.1 14.4 120 8-137 131-257 (294)
72 cd07251 Glo_EDI_BRP_like_10 Th 99.6 1.1E-14 2.5E-19 104.1 13.1 115 17-135 2-120 (121)
73 TIGR03213 23dbph12diox 2,3-dih 99.6 6.5E-15 1.4E-19 121.7 13.4 113 11-137 1-119 (286)
74 TIGR03213 23dbph12diox 2,3-dih 99.6 1.3E-14 2.8E-19 119.9 14.9 117 11-137 140-264 (286)
75 TIGR02295 HpaD 3,4-dihydroxyph 99.6 1.1E-14 2.3E-19 120.6 14.1 110 11-137 2-116 (294)
76 cd08358 Glo_EDI_BRP_like_21 Th 99.6 2.7E-14 5.9E-19 104.7 14.4 108 13-135 2-126 (127)
77 PLN02300 lactoylglutathione ly 99.5 7.5E-13 1.6E-17 109.6 14.3 123 10-137 151-279 (286)
78 KOG2944 Glyoxalase [Carbohydra 99.5 7.2E-13 1.6E-17 98.3 12.1 124 11-136 20-168 (170)
79 PF13669 Glyoxalase_4: Glyoxal 99.4 7.6E-13 1.7E-17 94.2 8.6 95 15-112 1-99 (109)
80 COG3324 Predicted enzyme relat 99.4 2.5E-11 5.5E-16 88.3 14.0 117 11-136 7-125 (127)
81 COG3565 Predicted dioxygenase 99.3 3.7E-11 8.1E-16 84.7 11.8 119 14-138 5-131 (138)
82 COG3607 Predicted lactoylgluta 99.3 8.1E-11 1.8E-15 84.2 10.4 119 15-137 5-128 (133)
83 COG0346 GloA Lactoylglutathion 99.2 1.2E-10 2.6E-15 82.9 8.4 121 12-135 1-138 (138)
84 cd07250 HPPD_C_like C-terminal 99.2 2.9E-10 6.2E-15 89.0 10.6 127 11-137 1-157 (191)
85 TIGR01263 4HPPD 4-hydroxypheny 99.1 1E-09 2.2E-14 93.5 12.5 131 7-137 152-311 (353)
86 TIGR01263 4HPPD 4-hydroxypheny 99.0 6.8E-09 1.5E-13 88.5 14.5 100 12-111 1-102 (353)
87 cd06588 PhnB_like Escherichia 99.0 1.7E-08 3.6E-13 73.7 13.5 110 17-134 3-128 (128)
88 PRK01037 trmD tRNA (guanine-N( 98.9 1E-08 2.2E-13 86.0 8.9 103 15-136 249-354 (357)
89 PLN02875 4-hydroxyphenylpyruva 98.7 8.3E-08 1.8E-12 82.7 10.3 129 9-137 176-341 (398)
90 KOG2943 Predicted glyoxalase [ 98.7 1.6E-07 3.5E-12 74.5 10.4 113 13-136 17-143 (299)
91 COG2514 Predicted ring-cleavag 98.6 2.6E-07 5.5E-12 74.7 10.0 100 10-134 165-264 (265)
92 COG2764 PhnB Uncharacterized p 98.6 2.2E-06 4.8E-11 63.3 13.9 117 17-137 4-132 (136)
93 KOG2943 Predicted glyoxalase [ 98.6 3.1E-07 6.7E-12 72.9 8.5 115 13-137 149-271 (299)
94 PF14506 CppA_N: CppA N-termin 98.4 1E-05 2.2E-10 57.9 12.4 114 16-138 3-116 (125)
95 PF14696 Glyoxalase_5: Hydroxy 98.4 6.1E-07 1.3E-11 66.6 6.6 123 6-136 2-126 (139)
96 KOG0638 4-hydroxyphenylpyruvat 98.4 1.1E-06 2.4E-11 72.4 6.8 104 9-112 13-122 (381)
97 PF13468 Glyoxalase_3: Glyoxal 98.3 3.1E-06 6.7E-11 65.1 7.5 122 14-136 1-137 (175)
98 PLN02875 4-hydroxyphenylpyruva 98.2 5.2E-05 1.1E-09 65.5 13.2 123 14-136 1-151 (398)
99 PRK10148 hypothetical protein; 98.1 0.00036 7.8E-09 52.3 14.6 117 16-140 4-145 (147)
100 COG3185 4-hydroxyphenylpyruvat 98.0 1E-05 2.2E-10 67.8 4.6 104 7-110 161-274 (363)
101 COG3185 4-hydroxyphenylpyruvat 97.3 0.0041 8.9E-08 52.4 11.5 119 3-127 12-141 (363)
102 KOG0638 4-hydroxyphenylpyruvat 97.0 0.001 2.3E-08 55.2 4.4 128 9-136 174-337 (381)
103 PF15067 FAM124: FAM124 family 96.5 0.022 4.7E-07 45.6 8.2 103 14-133 129-235 (236)
104 PF13669 Glyoxalase_4: Glyoxal 95.6 0.045 9.8E-07 38.3 6.1 82 83-169 1-88 (109)
105 cd08352 Glo_EDI_BRP_like_1 Thi 95.6 0.19 4E-06 35.0 9.3 85 81-169 3-92 (125)
106 cd08346 PcpA_N_like N-terminal 95.1 0.22 4.8E-06 34.7 8.3 89 81-169 1-96 (126)
107 PF06983 3-dmu-9_3-mt: 3-demet 95.0 0.69 1.5E-05 33.1 10.5 94 22-134 11-116 (116)
108 cd08353 Glo_EDI_BRP_like_7 Thi 94.7 0.37 7.9E-06 34.9 8.8 86 81-169 3-107 (142)
109 PF14507 CppA_C: CppA C-termin 94.6 0.098 2.1E-06 36.6 5.0 89 14-130 6-97 (101)
110 TIGR03645 glyox_marine lactoyl 94.2 0.53 1.1E-05 35.4 9.0 88 80-169 3-113 (162)
111 cd07241 Glo_EDI_BRP_like_3 Thi 93.1 1.1 2.3E-05 31.2 8.4 86 82-169 2-93 (125)
112 cd07245 Glo_EDI_BRP_like_9 Thi 92.6 0.94 2E-05 30.5 7.4 81 82-169 1-84 (114)
113 cd08347 PcpA_C_like C-terminal 92.1 1.4 3E-05 33.1 8.2 84 81-169 1-88 (157)
114 cd07233 Glyoxalase_I Glyoxalas 91.6 2.1 4.5E-05 29.6 8.4 84 82-169 1-90 (121)
115 PF13468 Glyoxalase_3: Glyoxal 91.6 0.36 7.8E-06 36.8 4.7 84 82-169 1-97 (175)
116 cd07242 Glo_EDI_BRP_like_6 Thi 91.2 1.6 3.4E-05 30.7 7.5 83 81-169 1-91 (128)
117 PRK11478 putative lyase; Provi 90.3 3 6.6E-05 29.2 8.3 85 81-169 6-95 (129)
118 cd07255 Glo_EDI_BRP_like_12 Th 90.0 2.6 5.6E-05 29.3 7.7 82 81-169 2-87 (125)
119 PF00903 Glyoxalase: Glyoxalas 90.0 1.9 4.2E-05 29.7 6.9 90 81-171 1-98 (128)
120 cd07249 MMCE Methylmalonyl-CoA 89.8 2.7 5.9E-05 29.2 7.7 84 82-169 1-92 (128)
121 cd07237 BphC1-RGP6_C_like C-te 88.1 4.9 0.00011 29.7 8.3 87 78-169 6-96 (154)
122 cd07262 Glo_EDI_BRP_like_19 Th 88.1 4.5 9.7E-05 28.1 7.8 81 82-168 1-86 (123)
123 cd07263 Glo_EDI_BRP_like_16 Th 88.0 5.5 0.00012 27.0 8.1 80 84-168 1-86 (119)
124 PF13670 PepSY_2: Peptidase pr 87.7 2.8 6E-05 27.9 6.1 45 91-137 30-74 (83)
125 cd06587 Glo_EDI_BRP_like This 87.2 5.6 0.00012 26.1 7.6 79 84-169 1-81 (112)
126 cd07250 HPPD_C_like C-terminal 86.7 3.5 7.5E-05 32.0 7.0 86 81-169 3-103 (191)
127 cd08342 HPPD_N_like N-terminal 86.2 6.9 0.00015 28.1 8.1 81 82-169 1-89 (136)
128 PLN03042 Lactoylglutathione ly 85.6 11 0.00024 29.2 9.3 88 77-169 23-141 (185)
129 cd08344 MhqB_like_N N-terminal 85.0 5.9 0.00013 27.2 6.9 75 81-169 2-77 (112)
130 PRK11700 hypothetical protein; 84.7 12 0.00026 29.2 8.8 75 12-90 38-119 (187)
131 cd08364 FosX FosX, a fosfomyci 84.4 7.4 0.00016 27.8 7.4 84 81-169 4-88 (131)
132 cd07268 Glo_EDI_BRP_like_4 Thi 84.4 15 0.00033 27.5 9.8 73 14-90 2-81 (149)
133 cd08348 BphC2-C3-RGP6_C_like T 84.3 9 0.00019 27.0 7.8 83 81-168 1-87 (134)
134 TIGR03081 metmalonyl_epim meth 83.5 10 0.00022 26.3 7.7 83 82-169 2-92 (128)
135 PLN02367 lactoylglutathione ly 83.2 7.3 0.00016 31.5 7.4 54 12-66 168-223 (233)
136 PF06185 YecM: YecM protein; 82.2 8.7 0.00019 29.9 7.2 75 12-90 33-114 (185)
137 cd07235 MRD Mitomycin C resist 81.7 11 0.00024 26.0 7.3 83 82-169 1-89 (122)
138 cd08358 Glo_EDI_BRP_like_21 Th 81.1 18 0.0004 26.2 9.1 73 81-154 2-88 (127)
139 PRK04101 fosfomycin resistance 80.5 12 0.00026 26.9 7.3 80 81-169 4-85 (139)
140 KOG2944 Glyoxalase [Carbohydra 79.5 11 0.00023 28.7 6.6 32 12-44 114-145 (170)
141 cd09014 BphC-JF8_C_like C-term 79.4 16 0.00035 27.3 8.0 29 81-109 6-35 (166)
142 cd04895 ACT_ACR_1 ACT domain-c 79.2 5.3 0.00012 26.1 4.5 40 92-131 15-55 (72)
143 cd08361 PpCmtC_N N-terminal do 78.5 14 0.00031 25.9 7.1 75 81-169 6-82 (124)
144 cd07253 Glo_EDI_BRP_like_2 Thi 77.6 15 0.00033 25.0 6.9 81 81-169 3-88 (125)
145 cd07252 BphC1-RGP6_N_like N-te 77.4 20 0.00042 24.9 7.5 77 81-169 2-80 (120)
146 cd07247 SgaA_N_like N-terminal 76.5 21 0.00045 24.2 8.0 79 83-169 2-81 (114)
147 PRK10291 glyoxalase I; Provisi 75.6 20 0.00043 25.2 7.2 54 12-66 64-121 (129)
148 cd08360 MhqB_like_C C-terminal 75.3 12 0.00025 26.7 5.9 33 11-43 60-94 (134)
149 cd07244 FosA FosA, a Fosfomyci 74.8 17 0.00038 25.1 6.6 78 81-169 1-79 (121)
150 PRK06724 hypothetical protein; 74.1 24 0.00053 25.2 7.3 76 80-168 6-85 (128)
151 cd07265 2_3_CTD_N N-terminal d 74.0 19 0.00042 24.8 6.7 77 81-169 4-84 (122)
152 cd07256 HPCD_C_class_II C-term 73.5 26 0.00056 26.0 7.6 28 81-108 3-31 (161)
153 cd04897 ACT_ACR_3 ACT domain-c 73.5 17 0.00037 23.9 5.7 40 92-131 15-55 (75)
154 cd08343 ED_TypeI_classII_C C-t 71.0 33 0.00072 24.1 7.5 52 83-136 1-54 (131)
155 cd08351 ChaP_like ChaP, an enz 70.0 34 0.00073 23.7 7.2 77 80-169 3-80 (123)
156 cd09013 BphC-JF8_N_like N-term 69.5 34 0.00073 23.5 7.2 76 81-169 6-85 (121)
157 cd08362 BphC5-RrK37_N_like N-t 67.8 35 0.00077 23.2 7.4 76 81-169 3-81 (120)
158 cd08363 FosB FosB, a fosfomyci 67.8 27 0.00058 24.8 6.4 79 82-169 1-81 (131)
159 PF02208 Sorb: Sorbin homologo 67.7 2.2 4.7E-05 25.2 0.4 30 7-36 5-34 (47)
160 cd07240 ED_TypeI_classII_N N-t 66.4 37 0.0008 22.8 7.3 76 81-169 2-80 (117)
161 cd07267 THT_Oxygenase_N N-term 57.2 17 0.00036 24.9 3.5 28 81-108 3-30 (113)
162 cd07257 THT_oxygenase_C The C- 57.2 45 0.00098 24.4 6.1 28 82-109 2-30 (153)
163 cd07243 2_3_CTD_C C-terminal d 55.8 42 0.00091 24.3 5.6 29 81-109 6-35 (143)
164 COG4747 ACT domain-containing 55.5 27 0.00059 25.3 4.3 85 14-109 42-136 (142)
165 cd07266 HPCD_N_class_II N-term 55.1 65 0.0014 21.9 7.8 76 81-169 4-83 (121)
166 cd04882 ACT_Bt0572_2 C-termina 54.5 26 0.00056 21.2 3.8 26 81-106 39-64 (65)
167 cd09012 Glo_EDI_BRP_like_24 Th 54.1 62 0.0013 22.3 6.1 82 83-169 2-91 (124)
168 PF07063 DUF1338: Domain of un 53.5 33 0.00073 28.8 5.2 30 78-107 181-216 (302)
169 PF03975 CheD: CheD chemotacti 52.5 29 0.00063 24.6 4.1 41 90-132 64-104 (114)
170 KOG4657 Uncharacterized conser 49.4 47 0.001 26.8 5.1 21 23-43 146-166 (246)
171 PF12681 Glyoxalase_2: Glyoxal 47.5 30 0.00066 22.9 3.6 32 11-43 54-85 (108)
172 PRK13495 chemoreceptor glutami 43.4 47 0.001 25.2 4.3 40 90-131 105-144 (159)
173 cd04927 ACT_ACR-like_2 Second 42.5 92 0.002 20.1 5.1 38 92-129 14-53 (76)
174 cd04883 ACT_AcuB C-terminal AC 42.2 60 0.0013 20.1 4.1 28 82-109 42-71 (72)
175 PRK13490 chemoreceptor glutami 41.8 52 0.0011 25.0 4.3 40 90-131 112-151 (162)
176 cd08359 Glo_EDI_BRP_like_22 Th 41.0 85 0.0018 21.2 5.1 27 16-43 69-95 (119)
177 PRK13498 chemoreceptor glutami 40.9 54 0.0012 25.0 4.3 41 89-131 114-154 (167)
178 cd07258 PpCmtC_C C-terminal do 40.2 45 0.00097 24.2 3.7 34 10-43 53-88 (141)
179 COG3865 Uncharacterized protei 39.6 1.6E+02 0.0035 22.1 11.5 94 22-134 14-122 (151)
180 COG3102 Uncharacterized protei 39.5 1.8E+02 0.0038 22.5 7.6 77 10-90 36-119 (185)
181 PRK13488 chemoreceptor glutami 39.4 61 0.0013 24.5 4.3 40 90-131 107-146 (157)
182 PRK13494 chemoreceptor glutami 39.3 61 0.0013 24.7 4.3 40 90-131 114-153 (163)
183 PRK13497 chemoreceptor glutami 37.9 67 0.0014 25.0 4.4 40 90-131 112-151 (184)
184 PRK13491 chemoreceptor glutami 36.9 67 0.0015 25.3 4.3 42 90-133 115-156 (199)
185 cd08350 BLMT_like BLMT, a bleo 36.6 1.4E+02 0.003 20.4 6.7 73 85-169 6-78 (120)
186 cd07239 BphC5-RK37_C_like C-te 35.8 68 0.0015 23.2 4.1 50 80-135 3-54 (144)
187 PRK13493 chemoreceptor glutami 35.6 69 0.0015 25.5 4.2 40 91-132 140-179 (213)
188 COG5301 Phage-related tail fib 35.6 40 0.00088 30.2 3.1 37 111-148 81-117 (587)
189 PRK13487 chemoreceptor glutami 34.4 78 0.0017 25.0 4.3 40 90-131 127-166 (201)
190 cd04906 ACT_ThrD-I_1 First of 34.1 69 0.0015 21.1 3.5 26 83-108 42-71 (85)
191 PF13225 DUF4033: Domain of un 33.3 60 0.0013 22.0 3.0 29 27-55 49-77 (86)
192 cd04900 ACT_UUR-like_1 ACT dom 32.7 1.3E+02 0.0028 18.9 4.8 39 92-130 15-55 (73)
193 COG1871 CheD Chemotaxis protei 32.7 91 0.002 23.8 4.2 41 90-132 114-154 (164)
194 cd08354 Glo_EDI_BRP_like_13 Th 31.9 1.6E+02 0.0035 19.7 8.3 80 83-169 2-89 (122)
195 PRK13489 chemoreceptor glutami 31.1 92 0.002 25.2 4.3 40 91-132 126-165 (233)
196 cd07238 Glo_EDI_BRP_like_5 Thi 30.8 1.6E+02 0.0036 19.5 7.2 30 14-44 58-87 (112)
197 PRK03467 hypothetical protein; 30.3 1.8E+02 0.0038 21.7 5.4 49 90-138 5-53 (144)
198 cd07264 Glo_EDI_BRP_like_15 Th 29.2 1.8E+02 0.004 19.5 5.3 28 15-43 73-100 (125)
199 TIGR00068 glyox_I lactoylgluta 29.2 2.2E+02 0.0047 20.4 9.7 89 77-169 13-106 (150)
200 PHA02754 hypothetical protein; 28.8 1.5E+02 0.0033 18.5 4.3 42 92-136 20-62 (67)
201 cd04896 ACT_ACR-like_3 ACT dom 28.8 1.6E+02 0.0034 19.3 4.4 38 92-130 14-54 (75)
202 PF02630 SCO1-SenC: SCO1/SenC; 27.7 70 0.0015 24.2 3.0 17 119-135 156-172 (174)
203 TIGR00318 cyaB adenylyl cyclas 27.2 1.2E+02 0.0025 23.1 4.2 38 85-128 6-43 (174)
204 PF08445 FR47: FR47-like prote 26.7 1.2E+02 0.0026 19.9 3.8 23 19-42 60-82 (86)
205 PRK11700 hypothetical protein; 26.5 3.2E+02 0.0068 21.4 7.2 79 81-166 39-131 (187)
206 PRK09437 bcp thioredoxin-depen 26.5 2.2E+02 0.0048 20.5 5.5 55 81-135 64-137 (154)
207 COG0450 AhpC Peroxiredoxin [Po 25.4 2.1E+02 0.0045 22.5 5.2 56 81-136 67-142 (194)
208 cd07254 Glo_EDI_BRP_like_20 Th 25.1 2.2E+02 0.0048 19.1 7.6 26 83-108 3-29 (120)
209 COG5397 Uncharacterized conser 24.8 66 0.0014 26.9 2.4 53 82-136 158-211 (349)
210 cd07268 Glo_EDI_BRP_like_4 Thi 24.4 3.1E+02 0.0067 20.6 6.6 50 82-136 2-60 (149)
211 COG1724 Predicted RNA binding 23.4 2.1E+02 0.0046 18.3 4.5 37 91-134 8-44 (66)
212 PRK06704 RNA polymerase factor 23.1 71 0.0015 25.6 2.4 49 81-134 178-226 (228)
213 PF08094 Toxin_24: Conotoxin T 22.8 32 0.00069 18.3 0.2 8 173-180 22-29 (33)
214 PF07494 Reg_prop: Two compone 22.7 1.1E+02 0.0023 15.1 2.2 13 120-132 8-20 (24)
215 cd04908 ACT_Bt0572_1 N-termina 22.7 1.7E+02 0.0037 17.8 3.7 24 84-107 42-65 (66)
216 PRK10234 DNA-binding transcrip 22.5 1.3E+02 0.0029 21.6 3.4 51 87-137 22-72 (118)
217 COG1225 Bcp Peroxiredoxin [Pos 22.4 3.5E+02 0.0076 20.4 6.9 55 80-134 63-136 (157)
218 PF00585 Thr_dehydrat_C: C-ter 22.3 1.4E+02 0.003 20.1 3.4 31 80-110 49-82 (91)
219 PF00379 Chitin_bind_4: Insect 22.2 1.1E+02 0.0025 18.0 2.7 18 118-135 28-45 (52)
220 PF11823 DUF3343: Protein of u 21.8 1.5E+02 0.0033 18.8 3.4 26 83-108 41-68 (73)
221 COG1218 CysQ 3'-Phosphoadenosi 21.8 1.1E+02 0.0024 25.4 3.3 34 96-129 55-95 (276)
222 PF06923 GutM: Glucitol operon 21.3 1.4E+02 0.003 21.1 3.3 50 88-137 22-71 (109)
223 PF09066 B2-adapt-app_C: Beta2 21.2 2.9E+02 0.0062 19.0 5.4 46 90-135 36-83 (114)
224 PRK03094 hypothetical protein; 20.9 2.7E+02 0.0058 18.6 4.9 48 88-135 5-53 (80)
225 PF12142 PPO1_DWL: Polyphenol 20.9 1.2E+02 0.0026 18.6 2.5 19 119-137 10-28 (54)
226 cd04885 ACT_ThrD-I Tandem C-te 20.3 1.4E+02 0.0031 18.5 3.0 27 81-107 38-67 (68)
No 1
>PRK11478 putative lyase; Provisional
Probab=99.86 E-value=3e-20 Score=135.33 Aligned_cols=125 Identities=23% Similarity=0.335 Sum_probs=88.9
Q ss_pred CcccceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCC---CcceEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccE
Q 029385 8 PLCLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSF---DFDGAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNH 84 (194)
Q Consensus 8 ~~~i~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~---~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~h 84 (194)
++.+++++||+|.|+|++++.+||+++|||++..+.... .+...+....+..++++....+...+.. ....+..|
T Consensus 1 ~~~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~--~~~~g~~h 78 (129)
T PRK11478 1 MLGLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGDLALNGQYVIELFSFPFPPERPSR--PEACGLRH 78 (129)
T ss_pred CCCcceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccceeeEecCCCcEEEEEEecCCCCCCCC--CCCCceeE
Confidence 367899999999999999999999999999986542110 1111122233456777665433222111 23356789
Q ss_pred EEEeeCCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEe
Q 029385 85 ISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 135 (194)
Q Consensus 85 iaf~v~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~ 135 (194)
++|.|+|+++++++|++.|+++...... ...+.+.+||+||||+.|||++
T Consensus 79 i~f~v~d~~~~~~~l~~~G~~~~~~~~~-~~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 79 LAFSVDDIDAAVAHLESHNVKCEAIRVD-PYTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred EEEEeCCHHHHHHHHHHcCCeeeccccC-CCCCCEEEEEECCCCCEEEEEe
Confidence 9999999999999999999998643322 2223488999999999999986
No 2
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.85 E-value=1.6e-20 Score=150.30 Aligned_cols=149 Identities=20% Similarity=0.269 Sum_probs=119.2
Q ss_pred cceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEEEEeeC
Q 029385 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCE 90 (194)
Q Consensus 11 i~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~ 90 (194)
-+.++.+.|.|+|++++..||+++||+++..+.+ +...++.+.. .++.....+...... ...+|+.|++|.++
T Consensus 8 ~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~-----~~v~L~vgg~-~LL~L~q~~~a~~~~-~~~aGLyH~AfLlP 80 (265)
T COG2514 8 PTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD-----GSVTLGVGGT-PLLTLEQFPDARRPP-PRAAGLYHTAFLLP 80 (265)
T ss_pred CcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC-----ceEEEeeCCE-EEEEEEeCCCCCCCC-ccccceeeeeeecC
Confidence 3567789999999999999999999999999984 4444555434 333222211222222 56789999999999
Q ss_pred ---CHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEecCCCCcCcCCCcchhhcccccccchhhhhhhh
Q 029385 91 ---NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLPVVPLAGDAVRIRSCTSTVNCNFHQQQI 167 (194)
Q Consensus 91 ---dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~ 167 (194)
|+.++..++.+.|+.+.+.. ++..+.++||.||+||.||||.+++...|.+..+ .|+|.| .++|.+.+....
T Consensus 81 ~r~~L~~~l~hl~~~~~~l~Ga~---DH~vSEAlYl~DPEGNGIEiYaDrp~~~W~~~~~-~v~m~t-~~ld~~~ll~~~ 155 (265)
T COG2514 81 TREDLARVLNHLAEEGIPLVGAS---DHLVSEALYLEDPEGNGIEIYADRPRSTWDWQND-QVKMDT-EPLDVEALLEEA 155 (265)
T ss_pred CHHHHHHHHHHHHhcCCcccccC---cchhheeeeecCCCCCeEEEEecCChHHhcccCC-eeeecc-cccCHHHHhhhc
Confidence 89999999999999998654 4556799999999999999999999999999877 899999 999999998777
Q ss_pred hhCC
Q 029385 168 QQEP 171 (194)
Q Consensus 168 ~~~~ 171 (194)
+.+|
T Consensus 156 ~~~~ 159 (265)
T COG2514 156 TKEP 159 (265)
T ss_pred cccc
Confidence 6444
No 3
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.83 E-value=3.4e-19 Score=132.08 Aligned_cols=124 Identities=16% Similarity=0.261 Sum_probs=90.2
Q ss_pred cceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCC--------c---c-eEEEEe---CCcEEEEeecCCCCCCCC--
Q 029385 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFD--------F---D-GAWLFN---YGMGIHLLKSEEPDNLPK-- 73 (194)
Q Consensus 11 i~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~--------~---~-~~~~~~---~g~~~~l~~~~~~~~~~~-- 73 (194)
+++++||+|.|+|++++++||++ |||++..+....+ . . ..+++. .+..++|+....+.....
T Consensus 1 ~~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~~~~~~~~~~ 79 (142)
T cd08353 1 VSRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFHHPAVIADHR 79 (142)
T ss_pred CceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEecCCCCcCcCC
Confidence 57899999999999999999998 9998866542100 0 0 112222 235788887654433221
Q ss_pred CCCCCCCCccEEEEeeCCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEec
Q 029385 74 AGKNINPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 136 (194)
Q Consensus 74 ~~~~~~~g~~hiaf~v~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~ 136 (194)
.......|..||||.|+|+++++++|++.|+++..++... ..+.+.+||+||||+.|||++.
T Consensus 80 ~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~-~~~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 80 PAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQY-ENSYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceec-CCCeEEEEEECCCCCEEEeeec
Confidence 1113456788999999999999999999999988755333 2345899999999999999973
No 4
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.82 E-value=8.4e-19 Score=131.09 Aligned_cols=118 Identities=19% Similarity=0.221 Sum_probs=83.2
Q ss_pred cccceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCc---ceEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEE
Q 029385 9 LCLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDF---DGAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHI 85 (194)
Q Consensus 9 ~~i~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~---~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hi 85 (194)
+.+++|+||+|.|+|++++.+||+++|||++..+....+. ...|+.. +...|.+.... ....+..|+
T Consensus 2 ~~~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~-~~~~h~~~~~~---------~~~~~~~Hi 71 (143)
T cd07243 2 IGAHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSC-SNKPHDIAFVG---------GPDGKLHHF 71 (143)
T ss_pred CCCceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEec-CCCcceEEEec---------CCCCCceEE
Confidence 4688999999999999999999999999998665321111 1234322 22333332211 113578899
Q ss_pred EEeeCCHHH---HHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEec
Q 029385 86 SFQCENMAI---VERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 136 (194)
Q Consensus 86 af~v~dl~~---~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~ 136 (194)
||.|+|+++ +.++|++.|+++...+...+....+.+||.|||||.|||++.
T Consensus 72 af~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 72 SFFLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 999998777 568999999998755432221234789999999999999864
No 5
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.81 E-value=2.1e-18 Score=123.90 Aligned_cols=122 Identities=26% Similarity=0.405 Sum_probs=88.4
Q ss_pred cceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEEEEeeC
Q 029385 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCE 90 (194)
Q Consensus 11 i~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~ 90 (194)
+++|+|+.|.|+|++++++||+++|||+...+.+.. ...++...+..+++....... .+... ....+..|++|.++
T Consensus 1 ~~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~-~~~~~-~~~~~~~hi~~~~~ 76 (125)
T cd07253 1 IKRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV--GRKALRFGSQKINLHPVGGEF-EPAAG-SPGPGSDDLCLITE 76 (125)
T ss_pred CcccceEEEEecCHHHHHHHHHHHhCceeecccccC--CceEEEeCCEEEEEecCCCcc-CcCcc-CCCCCCceEEEEec
Confidence 578999999999999999999999999998776421 223333334455555433221 11111 34467899999998
Q ss_pred C-HHHHHHHHHhCCCeEEccceecCc--cceEEEEEeCCCCCEEEEEec
Q 029385 91 N-MAIVERRLKEMKIDYVKSRVEEGG--INVDQLFFHDPDGSMIEICNC 136 (194)
Q Consensus 91 d-l~~~~~~l~~~Gi~~~~~~~~~~g--~~~~~~~~~DPDG~~iEi~~~ 136 (194)
+ +++++++++++|+++...+....+ ...+.+||.|||||.||++++
T Consensus 77 ~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 125 (125)
T cd07253 77 PPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSNY 125 (125)
T ss_pred ccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeeeC
Confidence 4 999999999999998766543222 224789999999999999863
No 6
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.81 E-value=1.3e-18 Score=128.64 Aligned_cols=123 Identities=15% Similarity=0.125 Sum_probs=87.8
Q ss_pred eeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCCcEEEEeecCCCCCCCC-CCCCCCCCccEEEEeeCCH
Q 029385 14 LNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMGIHLLKSEEPDNLPK-AGKNINPKDNHISFQCENM 92 (194)
Q Consensus 14 i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~-~~~~~~~g~~hiaf~v~dl 92 (194)
++|+.|.|+|++++++||+++|||++..+....+....++...+..+.+.....+..... .......+..|++|.|+|+
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~g~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia~~V~Dv 80 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSEDKASYLLRQGDINFVLNSPLNSFAPVADFLEKHGDGVCDVAFRVDDA 80 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCCceEEEEEEcCCEEEEEecCCCCCCchHHHHHhcCCceEEEEEEeCCH
Confidence 589999999999999999999999998875421111122222333444443322211100 0012446788999999999
Q ss_pred HHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEecC
Q 029385 93 AIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 137 (194)
Q Consensus 93 ~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~ 137 (194)
++++++|+++|+++..++... .++.+.++++||||++|||++..
T Consensus 81 da~~~~l~~~G~~v~~~p~~~-~~~~~~~~i~dp~G~~ie~~~~~ 124 (136)
T cd08342 81 AAAYERAVARGAKPVQEPVEE-PGELKIAAIKGYGDSLHTLVDRK 124 (136)
T ss_pred HHHHHHHHHcCCeEccCceec-CCeEEEEEEeccCCcEEEEEecC
Confidence 999999999999999877552 34569999999999999999854
No 7
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.80 E-value=2.1e-18 Score=123.86 Aligned_cols=121 Identities=26% Similarity=0.445 Sum_probs=86.7
Q ss_pred cceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEE--EE--eCCcEEEEeecCCCCCCCCCCCCCCCCccEEE
Q 029385 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAW--LF--NYGMGIHLLKSEEPDNLPKAGKNINPKDNHIS 86 (194)
Q Consensus 11 i~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~--~~--~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hia 86 (194)
+++++||+|.|.|++++++||+++|||++..+....+ ...| .+ ..+..++++........+. .....+..|++
T Consensus 1 ~~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~i~l~~~~~~~~~~~--~~~~~g~~h~~ 77 (125)
T cd08352 1 LFGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPE-RGSYKLDLLLNGGYQLELFSFPNPPERPS--YPEACGLRHLA 77 (125)
T ss_pred CCccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCC-CCcEEEEEecCCCcEEEEEEcCCCCCCCC--CCcCCCceEEE
Confidence 4689999999999999999999999999876542111 1122 12 2345566665443222111 12345788999
Q ss_pred EeeCCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEe
Q 029385 87 FQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 135 (194)
Q Consensus 87 f~v~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~ 135 (194)
|.|+|++++++++++.|+.+...+.. ...+.+.+|+.||+|++|||++
T Consensus 78 ~~v~d~~~~~~~l~~~G~~~~~~~~~-~~~~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 78 FSVEDIEAAVKHLKAKGVEVEPIRVD-EFTGKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred EEeCCHHHHHHHHHHcCCcccccccc-CCCceEEEEEECCCCCEEEecC
Confidence 99999999999999999998764422 2233478999999999999974
No 8
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.80 E-value=1.9e-18 Score=129.81 Aligned_cols=127 Identities=20% Similarity=0.281 Sum_probs=87.0
Q ss_pred cccceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcc-eEEEEeCC--cEEEEeecCCCCCCCCCCCCCCCCccEE
Q 029385 9 LCLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFD-GAWLFNYG--MGIHLLKSEEPDNLPKAGKNINPKDNHI 85 (194)
Q Consensus 9 ~~i~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~-~~~~~~~g--~~~~l~~~~~~~~~~~~~~~~~~g~~hi 85 (194)
.+.++++||.|.|+|++++.+||+++|||++..+....+.. ..+++..+ .....+........ .......+..|+
T Consensus 13 ~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~g~~hi 90 (150)
T TIGR00068 13 TKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGT--EKYDLGNGFGHI 90 (150)
T ss_pred cCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCC--CcccCCCceeEE
Confidence 46889999999999999999999999999987654321111 12223222 11112222111110 011223578899
Q ss_pred EEeeCCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEecC
Q 029385 86 SFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 137 (194)
Q Consensus 86 af~v~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~ 137 (194)
+|.|+|+++++++|.++|+++...+....+...+.+||+||||++|||++..
T Consensus 91 ~f~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~ 142 (150)
T TIGR00068 91 AIGVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRK 142 (150)
T ss_pred EEecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECC
Confidence 9999999999999999999987665433333347889999999999999854
No 9
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.80 E-value=2.5e-18 Score=126.44 Aligned_cols=116 Identities=20% Similarity=0.400 Sum_probs=83.8
Q ss_pred cceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCc---ceEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEEEE
Q 029385 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDF---DGAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISF 87 (194)
Q Consensus 11 i~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~---~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf 87 (194)
+++|+||+|.|+|++++++||+++|||+...+.+...+ ...++...+..+.+..... ....+..|++|
T Consensus 2 i~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~---------~~~~~~~Hiaf 72 (131)
T cd08364 2 IEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIGGLWIAIMEGDS---------LQERTYNHIAF 72 (131)
T ss_pred cccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcCCeEEEEecCCC---------CCCCCceEEEE
Confidence 67899999999999999999999999988776532111 1123332333444442211 11236789999
Q ss_pred eeC--CHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEec
Q 029385 88 QCE--NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 136 (194)
Q Consensus 88 ~v~--dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~ 136 (194)
.|+ ++++++++|++.|+++........+ ..+.+||+|||||.|||...
T Consensus 73 ~v~~~~ld~~~~~l~~~gv~~~~~~~~~~~-~g~~~yf~DPdG~~iEl~~~ 122 (131)
T cd08364 73 KISDSDVDEYTERIKALGVEMKPPRPRVQG-EGRSIYFYDFDNHLFELHTG 122 (131)
T ss_pred EcCHHHHHHHHHHHHHCCCEEecCCccccC-CceEEEEECCCCCEEEEecC
Confidence 998 8999999999999987754322222 24899999999999999964
No 10
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.80 E-value=2.5e-18 Score=131.19 Aligned_cols=127 Identities=20% Similarity=0.294 Sum_probs=87.8
Q ss_pred cceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCC--------C-------C-----cceEEEE-eCCcEEEEeecCCCC
Q 029385 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGS--------F-------D-----FDGAWLF-NYGMGIHLLKSEEPD 69 (194)
Q Consensus 11 i~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~--------~-------~-----~~~~~~~-~~g~~~~l~~~~~~~ 69 (194)
..+++||+|.|+|++++++||+++|||++..+... . . ...+++. ..+..++|++...+.
T Consensus 2 ~~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~~~ 81 (162)
T TIGR03645 2 PRTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKNQE 81 (162)
T ss_pred CceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccCCC
Confidence 35799999999999999999999999987643110 0 0 1111221 234568888776543
Q ss_pred CCCCCCCCCCCCccEEEEeeCCHHHHHHHHHhCCCeEEcccee--cCc-cceEEEEEeCCCCCEEEEEecC
Q 029385 70 NLPKAGKNINPKDNHISFQCENMAIVERRLKEMKIDYVKSRVE--EGG-INVDQLFFHDPDGSMIEICNCD 137 (194)
Q Consensus 70 ~~~~~~~~~~~g~~hiaf~v~dl~~~~~~l~~~Gi~~~~~~~~--~~g-~~~~~~~~~DPDG~~iEi~~~~ 137 (194)
...........|..|+||.|+|+++++++++++|+.+...... ..+ ...+.+|++|||||.|||++..
T Consensus 82 ~~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 152 (162)
T TIGR03645 82 NPEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHS 152 (162)
T ss_pred CCCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcC
Confidence 3221111234789999999999999999999999875432211 111 1237899999999999999864
No 11
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.80 E-value=4.7e-18 Score=132.24 Aligned_cols=128 Identities=21% Similarity=0.317 Sum_probs=91.1
Q ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcc-eEEEEe--------------------CCcEEEEeecCCCCC
Q 029385 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFD-GAWLFN--------------------YGMGIHLLKSEEPDN 70 (194)
Q Consensus 12 ~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~-~~~~~~--------------------~g~~~~l~~~~~~~~ 70 (194)
-+++|+.|.|+|+++|++||+++|||++..+....+.. ..+++. .+..++|+......+
T Consensus 26 ~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~~~ 105 (185)
T PLN03042 26 YIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGTES 105 (185)
T ss_pred cEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCCcc
Confidence 36899999999999999999999999988774311111 112222 234678876544332
Q ss_pred CC----CCC-CCCCCCccEEEEeeCCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEecCCCCc
Q 029385 71 LP----KAG-KNINPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLPV 141 (194)
Q Consensus 71 ~~----~~~-~~~~~g~~hiaf~v~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~~~p~ 141 (194)
.+ ... .....|..|++|.|+|+++++++|+++|+++...+.. +.+.+.+|++||||+.|||++..++-.
T Consensus 106 ~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~--~~~~~~~fi~DPdG~~IEl~e~~~~~~ 179 (185)
T PLN03042 106 DPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDD--GKMKGLAFIKDPDGYWIEIFDLKRIGG 179 (185)
T ss_pred cccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCcc--CCceeEEEEECCCCCEEEEEECCCchh
Confidence 11 110 0123589999999999999999999999998865532 222367888999999999999877653
No 12
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.79 E-value=7.9e-18 Score=121.70 Aligned_cols=119 Identities=29% Similarity=0.385 Sum_probs=84.8
Q ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEEEEeeC-
Q 029385 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCE- 90 (194)
Q Consensus 12 ~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~- 90 (194)
++|+||.|.|+|++++.+||+++|||++..+.+ ...++...+...++.....+.. .... ....+..|++|.|+
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~~~~l~~~~~~~~l~l~~~~~~-~~~~-~~~~~~~hi~f~v~~ 74 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERTD----STAVLGTGGKRPLLVLEEDPDA-PPAP-PGATGLYHFAILLPS 74 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcCC----CEEEEecCCCeEEEEEEeCCCC-Cccc-CCCCcEEEEEEECCC
Confidence 478999999999999999999999999988753 3444433332233322222211 1111 34567889999997
Q ss_pred --CHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEecCCC
Q 029385 91 --NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVL 139 (194)
Q Consensus 91 --dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~~~ 139 (194)
+++++++++.++|+++.... . .+. .+.+||.|||||.|||.+..+.
T Consensus 75 ~~~v~~~~~~l~~~g~~~~~~~-~-~~~-~~~~~~~DPdG~~iEi~~~~~~ 122 (125)
T cd07255 75 RADLAAALRRLIELGIPLVGAS-D-HLV-SEALYLSDPEGNGIEIYADRPR 122 (125)
T ss_pred HHHHHHHHHHHHHcCCceeccc-c-ccc-eeEEEEECCCCCEEEEEEecCc
Confidence 59999999999999876533 2 222 3789999999999999976543
No 13
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.79 E-value=4.1e-18 Score=129.40 Aligned_cols=115 Identities=22% Similarity=0.380 Sum_probs=83.9
Q ss_pred eeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeC---CcEEEEeecCCCCCCCCCCCCCCCCccEEEEee
Q 029385 13 SLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNY---GMGIHLLKSEEPDNLPKAGKNINPKDNHISFQC 89 (194)
Q Consensus 13 ~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v 89 (194)
+|+||+|.|+|++++.+||+++|||++..+... ...|.... +..+.+...... .... ....+..|++|.|
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~~---~~~~~~~~~~~~~~l~l~~~~~~---~~~~-~~~~~l~Hiaf~v 73 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEGD---RVRLEEGGGGPGAVVDVLEEPDQ---PRGR-PGAGTVHHVAFRV 73 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeCC---EEEEEecCCCCCCEEEEEeCCCC---CCCc-ccCCceEEEEEEC
Confidence 579999999999999999999999999877531 12233222 455666654211 1111 2345788999999
Q ss_pred CC---HHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEecC
Q 029385 90 EN---MAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 137 (194)
Q Consensus 90 ~d---l~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~ 137 (194)
+| +++++++|++.|+.+... ...+ ..+.+||.||||+.|||++..
T Consensus 74 ~d~~dvd~~~~~L~~~Gv~~~~~-~~~~--~~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 74 PDDEELEAWKERLEALGLPVSGI-VDRF--YFKSLYFREPGGILFEIATDG 121 (157)
T ss_pred CCHHHHHHHHHHHHHCCCCcccc-cccc--cEEEEEEECCCCcEEEEEECC
Confidence 97 999999999999986532 2222 248899999999999999875
No 14
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.79 E-value=3.8e-18 Score=126.61 Aligned_cols=118 Identities=28% Similarity=0.491 Sum_probs=86.6
Q ss_pred ccceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEEEEee
Q 029385 10 CLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQC 89 (194)
Q Consensus 10 ~i~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v 89 (194)
+|++|+||.|.|+|++++.+||+++|||++..+.. ...++...+..+.+.... ..+.. ....+..|++|.+
T Consensus 1 ~i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~----~~~~~~~~g~~l~l~~~~---~~~~~--~~~~~~~hiaf~v 71 (139)
T PRK04101 1 MLKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR----KTAYFDLNGLWIALNEEK---DIPRN--EIHQSYTHIAFSI 71 (139)
T ss_pred CCCcEEEEEEEecCHHHHHHHHHhccCCEEEeecC----eeEEEecCCeEEEeeccC---CCCCc--cCCCCeeEEEEEe
Confidence 36789999999999999999999999999987653 234443334334332211 11111 2234678999999
Q ss_pred C--CHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEecC
Q 029385 90 E--NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 137 (194)
Q Consensus 90 ~--dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~ 137 (194)
+ |+++++++++++|+++...+.... .+.+.+||.|||||.|||++..
T Consensus 72 ~~~dv~~~~~~l~~~G~~i~~~~~~~~-~~~~~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 72 EEEDFDHWYQRLKENDVNILPGRERDE-RDKKSIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred cHHHHHHHHHHHHHCCceEcCCccccC-CCceEEEEECCCCCEEEEEeCC
Confidence 8 999999999999999876543332 2349999999999999999753
No 15
>PLN02367 lactoylglutathione lyase
Probab=99.79 E-value=8.5e-18 Score=134.03 Aligned_cols=125 Identities=24% Similarity=0.367 Sum_probs=90.4
Q ss_pred eeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCC--cceEEE-------------------EeCCcEEEEeecCCCCCC
Q 029385 13 SLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFD--FDGAWL-------------------FNYGMGIHLLKSEEPDNL 71 (194)
Q Consensus 13 ~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~--~~~~~~-------------------~~~g~~~~l~~~~~~~~~ 71 (194)
.++|+.|.|+|++++++||+++|||++..+.+..+ +..+++ ++.+..++|+.....+..
T Consensus 75 ~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e~~ 154 (233)
T PLN02367 75 IMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTESD 154 (233)
T ss_pred EEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCCcc
Confidence 57999999999999999999999999888654221 111221 122346788765544321
Q ss_pred C----CCC-CCCCCCccEEEEeeCCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEecCCC
Q 029385 72 P----KAG-KNINPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVL 139 (194)
Q Consensus 72 ~----~~~-~~~~~g~~hiaf~v~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~~~ 139 (194)
+ ... .....|..||||.|+|+++++++|+++|+++...+.. +...+.+|++||||+.|||++....
T Consensus 155 ~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~--g~~~riaFIkDPDGn~IEL~e~~~~ 225 (233)
T PLN02367 155 PDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPND--GKMKGIAFIKDPDGYWIEIFDLKTI 225 (233)
T ss_pred ccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCcc--CCceEEEEEECCCCCEEEEEecccc
Confidence 1 111 0122589999999999999999999999999876533 2224788999999999999987543
No 16
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.79 E-value=5.6e-18 Score=121.97 Aligned_cols=119 Identities=18% Similarity=0.257 Sum_probs=82.9
Q ss_pred eeeeEEEEcCCHHHHHHHHHHccCCeEeeeCC--CCCcceEEEEe-CCcEEEEeecCCCCCCCCCCCCCCCCccEEEEee
Q 029385 13 SLNHISLVCRSVEASLDFYQNVLGFFPIRRPG--SFDFDGAWLFN-YGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQC 89 (194)
Q Consensus 13 ~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~--~~~~~~~~~~~-~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v 89 (194)
+++||+|.|+|++++++||+++|||++..+.. ...+...|+.. .+..+++++.......+ .. ....+..|+||.|
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~-~~~~g~~hi~f~v 78 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDDGARLELMTRPDIAPSP-NE-GERTGWAHLAFSV 78 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCCCcEEEEEcCcccCCCc-cc-CCCCceEEEEEEC
Confidence 47899999999999999999999999765421 11122334322 34567777543221111 11 3345789999999
Q ss_pred C---CHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEE
Q 029385 90 E---NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEIC 134 (194)
Q Consensus 90 ~---dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~ 134 (194)
+ ++++++++|+++|+++...+... +.+.+.++++|||||.|||.
T Consensus 79 ~~~~~v~~~~~~l~~~g~~~~~~~~~~-~~g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 79 GSKEAVDELTERLRADGYLIIGEPRTT-GDGYYESVILDPEGNRIEIT 125 (125)
T ss_pred CCHHHHHHHHHHHHHCCCEEEeCceec-CCCeEEEEEECCCCCEEEeC
Confidence 6 58999999999999988755322 23346678999999999984
No 17
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.79 E-value=4.9e-18 Score=122.67 Aligned_cols=113 Identities=24% Similarity=0.320 Sum_probs=82.9
Q ss_pred cccceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCC-cEEEEeecCCCCCCCCCCCCCCCCccEEEE
Q 029385 9 LCLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYG-MGIHLLKSEEPDNLPKAGKNINPKDNHISF 87 (194)
Q Consensus 9 ~~i~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g-~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf 87 (194)
|.+++|+|+.|.|+|++++.+||+++|||++..+.+ ...|+...+ ...+.+.... ....+..|++|
T Consensus 2 ~~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~----~~~~l~~~~~~~~~~~~l~~---------~~~~~~~h~af 68 (121)
T cd09013 2 FDIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG----QSVYLRAWGDYEHHSLKLTE---------SPEAGLGHIAW 68 (121)
T ss_pred CCccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC----CeEEEEeccCCCccEEEEee---------CCCCceEEEEE
Confidence 578999999999999999999999999999988753 234443322 1222221110 12347889999
Q ss_pred eeC---CHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEec
Q 029385 88 QCE---NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 136 (194)
Q Consensus 88 ~v~---dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~ 136 (194)
.|+ +++++++++++.|+++...... .+. ...+||+|||||.||++..
T Consensus 69 ~v~~~~~v~~~~~~l~~~G~~~~~~~~~-~~~-~~~~~~~DPdG~~iEl~~~ 118 (121)
T cd09013 69 RASSPEALERRVAALEASGLGIGWIEGD-PGH-GKAYRFRSPDGHPMELYWE 118 (121)
T ss_pred EcCCHHHHHHHHHHHHHcCCccccccCC-CCC-cceEEEECCCCCEEEEEEe
Confidence 997 6889999999999987542211 222 3689999999999999964
No 18
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.79 E-value=6.8e-18 Score=121.99 Aligned_cols=115 Identities=17% Similarity=0.256 Sum_probs=81.6
Q ss_pred cceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCC-cEEEEeecCCCCCCCCCCCCCCCCccEEEEee
Q 029385 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYG-MGIHLLKSEEPDNLPKAGKNINPKDNHISFQC 89 (194)
Q Consensus 11 i~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g-~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v 89 (194)
+.+|+|+.|.|+|++++++||+++|||++..+... ...|+...+ ...+.+.... ....+..|++|.|
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~---------~~~~~~~hiaf~v 69 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDDQ---GRVYLKAWDEFDHHSIVLRE---------ADTAGLDFMGFKV 69 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecCC---ceEEEEccCCCcccEEEecc---------CCCCCeeEEEEEe
Confidence 67899999999999999999999999998776421 233433221 1111111110 1134678999999
Q ss_pred C---CHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEecC
Q 029385 90 E---NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 137 (194)
Q Consensus 90 ~---dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~ 137 (194)
+ ++++++++++++|+++...+........+.+||.|||||.||++...
T Consensus 70 ~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 70 LDDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 7 89999999999999987643222211237899999999999998753
No 19
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.78 E-value=6.5e-18 Score=121.86 Aligned_cols=117 Identities=22% Similarity=0.250 Sum_probs=80.3
Q ss_pred eeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEEEEeeCCH
Q 029385 13 SLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCENM 92 (194)
Q Consensus 13 ~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~dl 92 (194)
+++|+.|.|+|++++.+||+++|||++..+.+ ..+.+..+..+++............. ....+..|++|.|+|+
T Consensus 2 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~l~~~v~dv 75 (120)
T cd09011 2 KFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG-----ENVTFEGGFALQEGYSWLEGISKADI-IEKSNNFELYFEEEDF 75 (120)
T ss_pred EEEEEEEEECCHHHHHHHHHHhcCCEEeeccC-----ceEEEeccceeccchhhhccCCcccc-cccCCceEEEEEehhh
Confidence 67899999999999999999999999875432 12222333233221111000000001 2234567999999999
Q ss_pred HHHHHHHHhCCC-eEEccceecCccceEEEEEeCCCCCEEEEEec
Q 029385 93 AIVERRLKEMKI-DYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 136 (194)
Q Consensus 93 ~~~~~~l~~~Gi-~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~ 136 (194)
++++++|+++|+ ++..++.. ..++.+.+||+|||||+|||.+.
T Consensus 76 d~~~~~l~~~g~~~~~~~~~~-~~~g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 76 DAFLDKLKRYDNIEYVHPIKE-HPWGQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred HHHHHHHHhcCCcEEecCccc-CCCccEEEEEECCCCCEEEEecc
Confidence 999999999985 67666543 33556899999999999999863
No 20
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.78 E-value=6e-18 Score=118.98 Aligned_cols=113 Identities=39% Similarity=0.684 Sum_probs=85.3
Q ss_pred eeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCCc-EEEEeecCCCCCCCCCCCCCCCCccEEEEeeCCH
Q 029385 14 LNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGM-GIHLLKSEEPDNLPKAGKNINPKDNHISFQCENM 92 (194)
Q Consensus 14 i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g~-~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~dl 92 (194)
|+|++|.|.|++++++||+++||++...+.... ....|+...+. .+++......... . ....+..|++|.|+|+
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~-~~~~~~~~~~~~~i~l~~~~~~~~~---~-~~~~~~~~~~~~v~d~ 75 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL-FPGAWLYAGDGPQLHLIEEDPPDAL---P-EGPGRDDHIAFRVDDL 75 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC-CCceEEEeCCCcEEEEEecCCCccc---c-CCCcccceEEEEeCCH
Confidence 589999999999999999999999987765321 23455544333 5777655433211 1 2345678999999999
Q ss_pred HHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEE
Q 029385 93 AIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEI 133 (194)
Q Consensus 93 ~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi 133 (194)
+++++++++.|+++...+.. ..+.+.++|.||||+.|||
T Consensus 76 ~~~~~~l~~~g~~~~~~~~~--~~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 76 DAFRARLKAAGVPYTESDVP--GDGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHHcCCCcccccCC--CCCccEEEEECCCCCEEeC
Confidence 99999999999998876533 2334889999999999996
No 21
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.77 E-value=9e-18 Score=122.29 Aligned_cols=113 Identities=18% Similarity=0.292 Sum_probs=82.1
Q ss_pred cccceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEEEEe
Q 029385 9 LCLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQ 88 (194)
Q Consensus 9 ~~i~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~ 88 (194)
.++++|.||.|.|+|++++.+||+++|||++..+.+ ...|+...+....+.... . . ++..|++|+
T Consensus 2 ~~~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~----~~~~l~~~~~~~~i~l~~-~--------~--~~~~~iaf~ 66 (124)
T cd08361 2 IELQDIAYVRLGTRDLAGATRFATDILGLQVAERTA----KATYFRSDARDHTLVYIE-G--------D--PAEQASGFE 66 (124)
T ss_pred ceEEEeeEEEEeeCCHHHHHHHHHhccCceeccCCC----CeEEEEcCCccEEEEEEe-C--------C--CceEEEEEE
Confidence 468899999999999999999999999999876643 345544332222222111 0 1 345789999
Q ss_pred eCC---HHHHHHHHHhCCCeEEccceecC--ccceEEEEEeCCCCCEEEEEec
Q 029385 89 CEN---MAIVERRLKEMKIDYVKSRVEEG--GINVDQLFFHDPDGSMIEICNC 136 (194)
Q Consensus 89 v~d---l~~~~~~l~~~Gi~~~~~~~~~~--g~~~~~~~~~DPDG~~iEi~~~ 136 (194)
|++ ++++++++++.|+++...+.... ..+.+.+||+|||||.||++..
T Consensus 67 v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~ 119 (124)
T cd08361 67 LRDDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVR 119 (124)
T ss_pred ECCHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEe
Confidence 985 99999999999999876442111 1123678999999999999864
No 22
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.77 E-value=1e-17 Score=121.05 Aligned_cols=112 Identities=20% Similarity=0.225 Sum_probs=81.9
Q ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEEEEeeC-
Q 029385 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCE- 90 (194)
Q Consensus 12 ~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~- 90 (194)
++|+||+|.|+|++++.+||+++|||++..+... ...|+...+..+.+..... ...+..|++|.++
T Consensus 1 ~~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~~---~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~f~v~~ 67 (120)
T cd07252 1 KSLGYLGVESSDLDAWRRFATDVLGLQVGDRPED---GALYLRMDDRAWRIAVHPG----------EADDLAYAGWEVAD 67 (120)
T ss_pred CcccEEEEEeCCHHHHHHHHHhccCceeccCCCC---CeEEEEccCCceEEEEEeC----------CCCceeEEEEEECC
Confidence 4789999999999999999999999998776321 3445444333333333221 1236679999997
Q ss_pred --CHHHHHHHHHhCCCeEEcccee---cCccceEEEEEeCCCCCEEEEEecC
Q 029385 91 --NMAIVERRLKEMKIDYVKSRVE---EGGINVDQLFFHDPDGSMIEICNCD 137 (194)
Q Consensus 91 --dl~~~~~~l~~~Gi~~~~~~~~---~~g~~~~~~~~~DPDG~~iEi~~~~ 137 (194)
|+++++++|++.|+++...+.. ..+ +.+.+||+|||||.||++...
T Consensus 68 ~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~-~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 68 EAALDALAARLRAAGVAVEEGSAELAAERG-VEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred HHHHHHHHHHHHHcCCeEEEcCHHHHhhCC-CcEEEEEECCCCCEEEEEecc
Confidence 5999999999999998864321 122 237899999999999999753
No 23
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.77 E-value=2.6e-17 Score=117.76 Aligned_cols=110 Identities=15% Similarity=0.213 Sum_probs=82.4
Q ss_pred cceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEEEEeeC
Q 029385 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCE 90 (194)
Q Consensus 11 i~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~ 90 (194)
|++|+||.|.|+|++++.+||++ |||++..+.. ...|+...+....++.... ....+..|++|.|+
T Consensus 1 ~~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~----~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~af~v~ 66 (113)
T cd07267 1 LTDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD----DELYYRGYGTDPFVYVARK---------GEKARFVGAAFEAA 66 (113)
T ss_pred CcEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC----CeEEEecCCCccEEEEccc---------CCcCcccEEEEEEC
Confidence 57899999999999999999999 9999877653 3456544333333333221 11246789999999
Q ss_pred CHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEec
Q 029385 91 NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 136 (194)
Q Consensus 91 dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~ 136 (194)
|.+++.+.++..|+....... .+ .+.+.+||.|||||.|||+..
T Consensus 67 ~~~~~~~~~~~~g~~~~~~~~-~~-~~~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 67 SRADLEKAAALPGASVIDDLE-AP-GGGKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred CHHHHHHHHHcCCCeeecCCC-CC-CCceEEEEECCCCCEEEEEec
Confidence 999999999999998765432 12 223789999999999999865
No 24
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.77 E-value=1.7e-17 Score=119.15 Aligned_cols=113 Identities=19% Similarity=0.262 Sum_probs=84.2
Q ss_pred cceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEEEEeeC
Q 029385 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCE 90 (194)
Q Consensus 11 i~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~ 90 (194)
+.+|+|+.|.|+|++++++||+++|||+...+.+ ...|+...+...+++.... ...++..|++|.|+
T Consensus 1 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~----~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~v~ 67 (120)
T cd08362 1 VTALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD----GIVYLRATGSEHHILRLRR---------SDRNRLDVVSFSVA 67 (120)
T ss_pred CceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC----CEEEEECCCCccEEEEecc---------CCCCCCceEEEEeC
Confidence 5789999999999999999999999999876653 3455443333334443221 11235679999994
Q ss_pred ---CHHHHHHHHHhCCCeEEccceec-CccceEEEEEeCCCCCEEEEEec
Q 029385 91 ---NMAIVERRLKEMKIDYVKSRVEE-GGINVDQLFFHDPDGSMIEICNC 136 (194)
Q Consensus 91 ---dl~~~~~~l~~~Gi~~~~~~~~~-~g~~~~~~~~~DPDG~~iEi~~~ 136 (194)
+++++++++++.|+++..++... .+++.+.++|+||+||.|||+..
T Consensus 68 ~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~ 117 (120)
T cd08362 68 SRADVDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSAD 117 (120)
T ss_pred CHHHHHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEec
Confidence 79999999999999987654221 22334789999999999999874
No 25
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.77 E-value=2e-17 Score=118.72 Aligned_cols=115 Identities=28% Similarity=0.383 Sum_probs=82.2
Q ss_pred eeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCC--CcceEEEEeCC----cEEEEeecCCCCCCCCCCCCCCCCccEEEE
Q 029385 14 LNHISLVCRSVEASLDFYQNVLGFFPIRRPGSF--DFDGAWLFNYG----MGIHLLKSEEPDNLPKAGKNINPKDNHISF 87 (194)
Q Consensus 14 i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~--~~~~~~~~~~g----~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf 87 (194)
+.||.|.|+|++++.+||+++|||++..+.... .....|+...+ ..+++........ + . ....+..|++|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-~-~--~~~~~~~~i~~ 76 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEE-P-Y--DNGNGFGHLAF 76 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCC-C-c--CCCCCeEEEEE
Confidence 579999999999999999999999987754321 12223333222 3455443322111 1 1 22346789999
Q ss_pred eeCCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEE
Q 029385 88 QCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEIC 134 (194)
Q Consensus 88 ~v~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~ 134 (194)
.|+|++++++++++.|+.+...+.... +.+.+||+|||||.|||+
T Consensus 77 ~v~did~~~~~l~~~G~~~~~~~~~~~--~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 77 AVDDVYAACERLEEMGVEVTKPPGDGG--MKGIAFIKDPDGYWIELI 121 (121)
T ss_pred EeCCHHHHHHHHHHCCCEEeeCCccCC--CceEEEEECCCCCEEEeC
Confidence 999999999999999999998765432 337889999999999985
No 26
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.76 E-value=1.5e-17 Score=122.31 Aligned_cols=114 Identities=23% Similarity=0.411 Sum_probs=82.7
Q ss_pred eeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEEEEeeC--C
Q 029385 14 LNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCE--N 91 (194)
Q Consensus 14 i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~--d 91 (194)
|+||.|.|+|++++.+||+++|||++..+.. ...++...+..+.+.... ..+.. ....+..|++|.|+ |
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~----~~~~~~~~~~~l~l~~~~---~~~~~--~~~~~~~hiaf~v~~~d 71 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE----KTAYFTIGGTWLALNEEP---DIPRN--EIRQSYTHIAFTIEDSE 71 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC----ccceEeeCceEEEEEccC---CCCcC--CcCccceEEEEEecHHH
Confidence 6899999999999999999999999876543 223333334444443322 11111 22457789999998 5
Q ss_pred HHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEecC
Q 029385 92 MAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 137 (194)
Q Consensus 92 l~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~ 137 (194)
++++++++++.|+.+..++.... .+.+.+||.|||||.|||.+..
T Consensus 72 ld~~~~~l~~~G~~~~~~~~~~~-~~~~~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 72 FDAFYTRLKEAGVNILPGRKRDV-RDRKSIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred HHHHHHHHHHcCCcccCCCcccc-CcceEEEEECCCCCEEEEecCc
Confidence 99999999999999875443222 2348999999999999999754
No 27
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.76 E-value=7e-18 Score=122.21 Aligned_cols=123 Identities=15% Similarity=0.220 Sum_probs=83.2
Q ss_pred eeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCC--CcceEEEEeCCcEEEEeecCCCCCCCC-CCCCCCCCccEEEEee
Q 029385 13 SLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSF--DFDGAWLFNYGMGIHLLKSEEPDNLPK-AGKNINPKDNHISFQC 89 (194)
Q Consensus 13 ~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~--~~~~~~~~~~g~~~~l~~~~~~~~~~~-~~~~~~~g~~hiaf~v 89 (194)
+++|+.|.|+|++++.+||+++|||+........ .....++...+..++|+.......... .......+..|+||.|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~~i~~~v 80 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGNTKVELLEPLGEDSPIAKFLEKNGGGIHHIAIEV 80 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCCEEEEEEecCCCCChHHHHHhcCCCceEEEEEEc
Confidence 4789999999999999999999999987643211 112233322345677765322211100 0012245778999999
Q ss_pred CCHHHHHHHHHhCCCeEEccceecCccceEEEEE--eCCCCCEEEEEe
Q 029385 90 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFF--HDPDGSMIEICN 135 (194)
Q Consensus 90 ~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~--~DPDG~~iEi~~ 135 (194)
+|+++++++++++|+++..++.....++.+.+|+ +||||++||+.+
T Consensus 81 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 81 DDIEAALETLKEKGVRLIDEEPRIGAGGKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred CCHHHHHHHHHHCCCcccCCCCccCCCCCEEEEecccccCcEEEEecC
Confidence 9999999999999999876422222234466677 799999999974
No 28
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.76 E-value=4.3e-17 Score=116.10 Aligned_cols=113 Identities=19% Similarity=0.175 Sum_probs=82.7
Q ss_pred eeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCC-cEEEEeecCCCCCCCCCCCCCCCCccEEEEeeCCH
Q 029385 14 LNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYG-MGIHLLKSEEPDNLPKAGKNINPKDNHISFQCENM 92 (194)
Q Consensus 14 i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g-~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~dl 92 (194)
++|+.|.|+|++++++||+++|||++..... .+....++...+ ....++...... ...+...|++|.|+|+
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~f~v~di 72 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGGDYAVFSTGGGAVGGLMKAPEPA-------AGSPPGWLVYFAVDDV 72 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCCceEEEEeCCccEEEEecCCCCC-------CCCCCeEEEEEEeCCH
Confidence 4799999999999999999999999877653 111222222222 234444433221 1234677999999999
Q ss_pred HHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEe
Q 029385 93 AIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 135 (194)
Q Consensus 93 ~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~ 135 (194)
++++++|.+.|+++..++...++ +.+.+||+|||||.|+|++
T Consensus 73 ~~~~~~l~~~g~~~~~~~~~~~~-~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 73 DAAAARVEAAGGKVLVPPTDIPG-VGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHHHHCCCEEEeCCcccCC-cEEEEEEECCCCCEEEeEC
Confidence 99999999999998877654442 3489999999999999974
No 29
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.76 E-value=3.8e-17 Score=120.43 Aligned_cols=117 Identities=22% Similarity=0.182 Sum_probs=81.7
Q ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCC-cEEEEeecCCCCCCCCCCCCCCCCccEEEEeeC
Q 029385 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYG-MGIHLLKSEEPDNLPKAGKNINPKDNHISFQCE 90 (194)
Q Consensus 12 ~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g-~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~ 90 (194)
++++||+|.|+|++++.+||+++|||++..+... ...|+...+ ...+.+...... ....+..|++|.|+
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~~---~~~~~~~~~~~~~~~i~l~~~~-------~~~~g~~hiaf~v~ 71 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFKG---RGAFLRAAGGGDHHNLFLIKTP-------APMAGFHHAAFEVG 71 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEecC---cEEEEECCCCCCCcEEEEecCC-------CCCCcceEEEEEeC
Confidence 5789999999999999999999999998766431 245543322 122222111110 11357899999999
Q ss_pred CHHHHH---HHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEecCC
Q 029385 91 NMAIVE---RRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDV 138 (194)
Q Consensus 91 dl~~~~---~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~~ 138 (194)
|++++. ++|++.|+++...+........+.+||+||||+.||++....
T Consensus 72 d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~~ 122 (134)
T cd08360 72 DIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADMD 122 (134)
T ss_pred CHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEcccc
Confidence 887776 599999999775443322222367999999999999997543
No 30
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.76 E-value=4.5e-17 Score=116.14 Aligned_cols=110 Identities=22% Similarity=0.352 Sum_probs=83.9
Q ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeC-CcEEEEeecCCCCCCCCCCCCCCCCccEEEEeeC
Q 029385 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNY-GMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCE 90 (194)
Q Consensus 12 ~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~-g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~ 90 (194)
++|+|+.|.|+|++++.+||+++|||++..+.+ ...|+... +....+..... ...+..|++|.|+
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~----~~~~~~~~~~~~~~~~~~~~----------~~~~~~h~~~~v~ 66 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA----GSVYLRCSEDDHHSLVLTEG----------DEPGVDALGFEVA 66 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC----CeEEEecCCCCcEEEEEEeC----------CCCCceeEEEEcC
Confidence 478999999999999999999999999988763 34555444 22333322211 1246789999998
Q ss_pred ---CHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEec
Q 029385 91 ---NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 136 (194)
Q Consensus 91 ---dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~ 136 (194)
+++++++++++.|+++...+....+ +.+.+||.||+||.||++..
T Consensus 67 ~~~~v~~~~~~l~~~g~~~~~~~~~~~~-~~~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 67 SEEDLEALAAHLEAAGVAPEEASDPEPG-VGRGLRFQDPDGHLLELFVE 114 (117)
T ss_pred CHHHHHHHHHHHHHcCCceEEcCccCCC-CceEEEEECCCCCEEEEEEc
Confidence 6899999999999998876532332 34889999999999999965
No 31
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.75 E-value=3.7e-17 Score=117.75 Aligned_cols=112 Identities=24% Similarity=0.311 Sum_probs=81.9
Q ss_pred ccceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCC--cEEEEeecCCCCCCCCCCCCCCCCccEEEE
Q 029385 10 CLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYG--MGIHLLKSEEPDNLPKAGKNINPKDNHISF 87 (194)
Q Consensus 10 ~i~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g--~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf 87 (194)
++++++|+.|.|+|++++.+||+++|||++..+.+ ...|+...+ ....+.... ...++..|++|
T Consensus 1 ~~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~~~~~~~~~~~~~~~~~~~~----------~~~~~~~hi~~ 66 (121)
T cd07266 1 NILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD----DRIYLRGLEEFIHHSLVLTK----------APVAGLGHIAF 66 (121)
T ss_pred CcceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC----CeEEEEecCCCceEEEEEee----------CCCCceeEEEE
Confidence 36789999999999999999999999999877653 334443221 122222111 12246889999
Q ss_pred eeC---CHHHHHHHHHhCCCeEEccce-ecCccceEEEEEeCCCCCEEEEEec
Q 029385 88 QCE---NMAIVERRLKEMKIDYVKSRV-EEGGINVDQLFFHDPDGSMIEICNC 136 (194)
Q Consensus 88 ~v~---dl~~~~~~l~~~Gi~~~~~~~-~~~g~~~~~~~~~DPDG~~iEi~~~ 136 (194)
.|. |++++++++++.|+++...+. ...+. .+.+|+.|||||.||++..
T Consensus 67 ~v~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 67 RVRSEEDLDKAEAFFQELGLPTEWVEAGEEPGQ-GRALRVEDPLGFPIEFYAE 118 (121)
T ss_pred ECCCHHHHHHHHHHHHHcCCCcccccCCcCCCC-ccEEEEECCCCCEEEEEec
Confidence 995 899999999999999876422 22222 3789999999999999864
No 32
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.75 E-value=7.7e-17 Score=117.07 Aligned_cols=118 Identities=25% Similarity=0.422 Sum_probs=87.8
Q ss_pred eeeeEEEEcCCHHHHHHHHHHcc---CCeEeeeCCCCCcceEEEEe-CCcEEEEeecCCCCCCCCCCCCCCCCccEEEEe
Q 029385 13 SLNHISLVCRSVEASLDFYQNVL---GFFPIRRPGSFDFDGAWLFN-YGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQ 88 (194)
Q Consensus 13 ~i~hv~l~v~Dle~s~~FY~~vL---G~~~~~~~~~~~~~~~~~~~-~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~ 88 (194)
+|+||.|.|+|++++.+||+++| ||++..+... ...|... .+..+.+.......+. .......+..|++|.
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~~---~~~~~~~~~~~~i~l~~~~~~~~~--~~~~~~~g~~hia~~ 75 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWED---GRSWRAGDGGTYLVLQQADGESAG--RHDRRNPGLHHLAFR 75 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeecc---CceEEecCCceEEEEEecccCCCc--ccccCCcCeeEEEEE
Confidence 57899999999999999999999 9998877521 2345443 4456667655433221 111334567899999
Q ss_pred eC---CHHHHHHHHHhCCCeEEccceec--CccceEEEEEeCCCCCEEEEEe
Q 029385 89 CE---NMAIVERRLKEMKIDYVKSRVEE--GGINVDQLFFHDPDGSMIEICN 135 (194)
Q Consensus 89 v~---dl~~~~~~l~~~Gi~~~~~~~~~--~g~~~~~~~~~DPDG~~iEi~~ 135 (194)
|+ |+++++++++++|+++...+... ...+.+.+||+|||||.|||+.
T Consensus 76 v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~ 127 (128)
T cd07242 76 APSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVA 127 (128)
T ss_pred cCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEe
Confidence 97 58999999999999988866431 1223489999999999999985
No 33
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.75 E-value=5.9e-17 Score=115.19 Aligned_cols=114 Identities=18% Similarity=0.279 Sum_probs=81.2
Q ss_pred eEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEE-e-CC---cEEEEeecCCCCCCCCCCCCCCCCccEEEEeeC
Q 029385 16 HISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLF-N-YG---MGIHLLKSEEPDNLPKAGKNINPKDNHISFQCE 90 (194)
Q Consensus 16 hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~-~-~g---~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~ 90 (194)
||+|.|.|++++++||+++|||++..+....+ ...|+. . .+ ..+++.....+. .... ....+..|++|.|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~-~~~~~~~~~~~~v~ 76 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPGSPETSLVLAPPANPA--AMSG-LQPGGTPGLVLATD 76 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCCCCeeEEEEeCCCCcc--cccc-ccCCCceEEEEEeh
Confidence 89999999999999999999999987753111 223332 2 12 233333322211 1111 23457789999999
Q ss_pred CHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEe
Q 029385 91 NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 135 (194)
Q Consensus 91 dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~ 135 (194)
|++++++++.++|+++...+.... ..+.+|++|||||.|||++
T Consensus 77 di~~~~~~l~~~g~~~~~~~~~~~--~~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 77 DIDATYEELKARGVEFSEEPREMP--YGTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHHHHHhCCCEEeeccccCC--CceEEEEECCCCCEEEEeC
Confidence 999999999999999987763222 2389999999999999974
No 34
>PLN02300 lactoylglutathione lyase
Probab=99.75 E-value=3.7e-17 Score=135.32 Aligned_cols=128 Identities=17% Similarity=0.193 Sum_probs=90.9
Q ss_pred cccceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCC--CcceEEEEeCC--c--EEEEeecCCCCCCCCCCCCCCCCc
Q 029385 9 LCLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSF--DFDGAWLFNYG--M--GIHLLKSEEPDNLPKAGKNINPKD 82 (194)
Q Consensus 9 ~~i~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~--~~~~~~~~~~g--~--~~~l~~~~~~~~~~~~~~~~~~g~ 82 (194)
+.+++|+|+.|.|+|++++++||+++|||++..+.... .+...|+...+ . .+.+.... ... . ...+.+.
T Consensus 20 ~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~---~~~-~-~~~~~g~ 94 (286)
T PLN02300 20 KDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNY---GVD-K-YDIGTGF 94 (286)
T ss_pred cccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccC---CCC-c-cccCCCc
Confidence 67999999999999999999999999999987654211 12233432111 1 12232211 111 1 1334678
Q ss_pred cEEEEeeCCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEecCCCCc
Q 029385 83 NHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLPV 141 (194)
Q Consensus 83 ~hiaf~v~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~~~p~ 141 (194)
.|++|.|+|+++++++++++|+++...+...++.+.+.+||+||||+.|||++....|.
T Consensus 95 ~hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~~~~ 153 (286)
T PLN02300 95 GHFGIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGPTPE 153 (286)
T ss_pred cEEEEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCCCCC
Confidence 89999999999999999999999887664443333467899999999999999765543
No 35
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.75 E-value=8.1e-17 Score=123.26 Aligned_cols=122 Identities=19% Similarity=0.279 Sum_probs=84.0
Q ss_pred cccceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCC--CcceEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEEE
Q 029385 9 LCLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSF--DFDGAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHIS 86 (194)
Q Consensus 9 ~~i~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~--~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hia 86 (194)
|.|++|+|++|.|+|++++.+||+++|||++..+.... .....|+...+....+....... ....+..|+|
T Consensus 2 ~~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~-------~~~~~~~hia 74 (166)
T cd09014 2 VGVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNKVHDVAYTRDPA-------GARGRLHHLA 74 (166)
T ss_pred CCcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCCceeEEEecCCC-------CCCCCceEEE
Confidence 67999999999999999999999999999987653211 11234543322222222211110 1124678999
Q ss_pred EeeCC---HHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEecC
Q 029385 87 FQCEN---MAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 137 (194)
Q Consensus 87 f~v~d---l~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~ 137 (194)
|.|+| +++++++|++.|+++...+...+......+|+.||||++|||++..
T Consensus 75 f~v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~~ 128 (166)
T cd09014 75 YALDTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGGG 128 (166)
T ss_pred EECCCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEcC
Confidence 99985 5588899999999986554332222335689999999999999873
No 36
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.74 E-value=2.5e-17 Score=124.43 Aligned_cols=121 Identities=19% Similarity=0.143 Sum_probs=79.9
Q ss_pred eeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCC---CCcceEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEEEEee
Q 029385 13 SLNHISLVCRSVEASLDFYQNVLGFFPIRRPGS---FDFDGAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQC 89 (194)
Q Consensus 13 ~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~---~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v 89 (194)
+|+||+|.|+|++++++||+++|||++..+... ......|+...+ +..++... ...... ....+..||||.|
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~---~~~l~~-~~~~g~~Hiaf~v 75 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDR-GEEYVDHH---TLALAQ-GPESGVHHAAFEV 75 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCC-CCCcccch---HHHHhc-CCCCceeEEEEEc
Confidence 478999999999999999999999998755321 011233332211 10110000 000000 1146889999999
Q ss_pred CCHHHHH---HHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEecCC
Q 029385 90 ENMAIVE---RRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDV 138 (194)
Q Consensus 90 ~dl~~~~---~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~~ 138 (194)
+|++++. ++|++.|+++...+..........+||+|||||.|||+....
T Consensus 76 ~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~~ 127 (153)
T cd07257 76 HDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDGD 127 (153)
T ss_pred CCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCce
Confidence 9999986 999999999876543222112356799999999999997653
No 37
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.74 E-value=1e-16 Score=116.21 Aligned_cols=110 Identities=25% Similarity=0.378 Sum_probs=80.8
Q ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEE-eCCcEEEEeecCCCCCCCCCCCCCCCCccEEEEeeC
Q 029385 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLF-NYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCE 90 (194)
Q Consensus 12 ~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~-~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~ 90 (194)
.+++|+.|.|+|++++++||+++||++.....+ ...++. ..+..+.+... ....+..|++|.++
T Consensus 3 ~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~~~~~~~~~~~~l~~~~~-----------~~~~~~~h~a~~v~ 67 (123)
T cd08351 3 VTLNHTIVPARDREASAEFYAEILGLPWAKPFG----PFAVVKLDNGVSLDFAQP-----------DGEIPPQHYAFLVS 67 (123)
T ss_pred ceEeEEEEEcCCHHHHHHHHHHhcCCEeeeccC----CEEEEEcCCCcEEEEecC-----------CCCCCcceEEEEeC
Confidence 578999999999999999999999999877442 222322 23333433321 11224579999887
Q ss_pred --CHHHHHHHHHhCCCeEEccceec------CccceEEEEEeCCCCCEEEEEec
Q 029385 91 --NMAIVERRLKEMKIDYVKSRVEE------GGINVDQLFFHDPDGSMIEICNC 136 (194)
Q Consensus 91 --dl~~~~~~l~~~Gi~~~~~~~~~------~g~~~~~~~~~DPDG~~iEi~~~ 136 (194)
|++++++++.+.|+++...+... ..++.+.+||.|||||.|||++.
T Consensus 68 ~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 68 EEEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITR 121 (123)
T ss_pred HHHHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEec
Confidence 79999999999999987654321 12345999999999999999986
No 38
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.74 E-value=7.6e-17 Score=114.53 Aligned_cols=109 Identities=26% Similarity=0.456 Sum_probs=78.8
Q ss_pred eEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEEEEeeC--CHH
Q 029385 16 HISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCE--NMA 93 (194)
Q Consensus 16 hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~--dl~ 93 (194)
||.|.|+|++++.+||+++|||+...+.+ ...|+...+..+.+.... ... ....+..|++|.|+ +++
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~----~~~~~~~~~~~l~~~~~~---~~~----~~~~~~~hiaf~v~~~d~~ 69 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS----KEAYFELAGLWICLMEED---SLQ----GPERTYTHIAFQIQSEEFD 69 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC----ceeEEEecCeEEEeccCC---CcC----CCCCCccEEEEEcCHHHHH
Confidence 89999999999999999999999887763 334443334333332221 111 12346789999995 899
Q ss_pred HHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEec
Q 029385 94 IVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 136 (194)
Q Consensus 94 ~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~ 136 (194)
+++++++++|+++........ .+.+.+|++|||||.|||+..
T Consensus 70 ~~~~~l~~~G~~~~~~~~~~~-~~~~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 70 EYTERLKALGVEMKPERPRVQ-GEGRSIYFYDPDGHLLELHAG 111 (113)
T ss_pred HHHHHHHHcCCccCCCccccC-CCceEEEEECCCCCEEEEEeC
Confidence 999999999999875432222 234899999999999999853
No 39
>PRK06724 hypothetical protein; Provisional
Probab=99.74 E-value=7.1e-17 Score=118.62 Aligned_cols=111 Identities=21% Similarity=0.337 Sum_probs=77.4
Q ss_pred cceeeeEEEEcCCHHHHHHHHHHcc---CCeEeeeCCCCCcceEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEEEE
Q 029385 11 LKSLNHISLVCRSVEASLDFYQNVL---GFFPIRRPGSFDFDGAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISF 87 (194)
Q Consensus 11 i~~i~hv~l~v~Dle~s~~FY~~vL---G~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf 87 (194)
..+|+||.|.|+|+++|++||+++| |++...+. .| ...+..+.+.... ... ....+..|+||
T Consensus 5 ~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~-------~~-~~g~~~l~l~~~~--~~~-----~~~~g~~h~af 69 (128)
T PRK06724 5 RAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEV-------AY-STGESEIYFKEVD--EEI-----VRTLGPRHICY 69 (128)
T ss_pred CcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeE-------ee-eCCCeeEEEecCC--ccc-----cCCCCceeEEE
Confidence 5679999999999999999999977 55543210 11 1111223222211 111 11347789999
Q ss_pred ee---CCHHHHHHHHHhCCCeEEccceecC--ccceEEEEEeCCCCCEEEEEec
Q 029385 88 QC---ENMAIVERRLKEMKIDYVKSRVEEG--GINVDQLFFHDPDGSMIEICNC 136 (194)
Q Consensus 88 ~v---~dl~~~~~~l~~~Gi~~~~~~~~~~--g~~~~~~~~~DPDG~~iEi~~~ 136 (194)
.| ++++++++++.+.|+++..++.... +.+.+.+||.|||||.|||...
T Consensus 70 ~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 123 (128)
T PRK06724 70 QAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYT 123 (128)
T ss_pred ecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeC
Confidence 98 5899999999999999876664432 3455899999999999999865
No 40
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.73 E-value=1.4e-16 Score=114.56 Aligned_cols=116 Identities=22% Similarity=0.412 Sum_probs=82.3
Q ss_pred eeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCc--ceEEEEe-----CCcEEEEeecCCCCCCCCCCCCCCCCccEE
Q 029385 13 SLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDF--DGAWLFN-----YGMGIHLLKSEEPDNLPKAGKNINPKDNHI 85 (194)
Q Consensus 13 ~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~--~~~~~~~-----~g~~~~l~~~~~~~~~~~~~~~~~~g~~hi 85 (194)
+|+||+|.|.|++++++||+++|||+...+....+. ...+.+. .+..++++....... + ......+..|+
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~--~~~~~~~~~hi 77 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGP-K--GRRGPGQIHHI 77 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCC-C--CCCCCCcEEEE
Confidence 478999999999999999999999998876532211 1122222 234466665433221 1 11334567899
Q ss_pred EEeeC---CHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEE
Q 029385 86 SFQCE---NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEIC 134 (194)
Q Consensus 86 af~v~---dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~ 134 (194)
+|.|+ ++++++++++++|+++.... ... +.+.+||+|||||.|||+
T Consensus 78 ~f~v~~~~~~~~~~~~~~~~g~~~~~~~-~~~--~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 78 AFSVPSEASLDAWRERLRAAGVPVSGVV-DHF--GERSIYFEDPDGLRLELT 126 (126)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCcccceE-eec--ceEEEEEECCCCCEEEeC
Confidence 99998 57999999999999987543 222 348999999999999984
No 41
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.73 E-value=8.8e-17 Score=116.15 Aligned_cols=121 Identities=22% Similarity=0.354 Sum_probs=85.7
Q ss_pred eeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCC---CcceEEEEeCCcEEEEeecCCCCCCCCC-CCCCCCCccEEEEee
Q 029385 14 LNHISLVCRSVEASLDFYQNVLGFFPIRRPGSF---DFDGAWLFNYGMGIHLLKSEEPDNLPKA-GKNINPKDNHISFQC 89 (194)
Q Consensus 14 i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~---~~~~~~~~~~g~~~~l~~~~~~~~~~~~-~~~~~~g~~hiaf~v 89 (194)
|+||.|.|+|++++.+||+++|||++....... +....++...+..+++++.......... .....++..|++|.|
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~~f~v 80 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLGNVQIELIEPLDDDSPIAKFLEKRGEGLHHIAFEV 80 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcCCEEEEEEEECCCCCcHHHHHhcCCCceEEEEEEe
Confidence 579999999999999999999999998765432 1123444445567777765432221110 013457889999999
Q ss_pred CCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCC---CCEEEEEe
Q 029385 90 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPD---GSMIEICN 135 (194)
Q Consensus 90 ~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPD---G~~iEi~~ 135 (194)
+|++++++++++.|+++..++......+ +.+++.||+ |++|||++
T Consensus 81 ~d~~~~~~~l~~~G~~~~~~~~~~~~~g-~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 81 DDIDAALARLKAQGVRLLQEGPRIGAGG-KRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred CCHHHHHHHHHHCCCeeeccCCCccCCC-CEEEEEecCCCceEEEEecC
Confidence 9999999999999999987764222223 455555554 99999974
No 42
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.73 E-value=1.7e-16 Score=118.73 Aligned_cols=113 Identities=24% Similarity=0.327 Sum_probs=79.5
Q ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEEEEeeCC
Q 029385 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCEN 91 (194)
Q Consensus 12 ~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~d 91 (194)
.+++||.|.|+|++++.+||+++|||++....+. ...|+...+....+.... ...++..|++|.|+|
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~---~~~~l~~~~~~~~~~l~~----------~~~~~~~hiaf~v~d 69 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLGD---QMAFLRCNSDHHSIAIAR----------GPHPSLNHVAFEMPS 69 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeCC---eEEEEECCCCcceEEEcc----------CCCCceEEEEEECCC
Confidence 3789999999999999999999999998755321 124433222122221111 113478899999998
Q ss_pred HHHHH---HHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEecC
Q 029385 92 MAIVE---RRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 137 (194)
Q Consensus 92 l~~~~---~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~ 137 (194)
++++. ++|++.|+++...+........+.+||+|||||.|||++..
T Consensus 70 ~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~ 118 (144)
T cd07239 70 IDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSEL 118 (144)
T ss_pred HHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCc
Confidence 77775 89999999987654332222236689999999999999864
No 43
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.73 E-value=1.3e-16 Score=120.69 Aligned_cols=118 Identities=18% Similarity=0.189 Sum_probs=80.9
Q ss_pred cceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCC-----CcceEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEE
Q 029385 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSF-----DFDGAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHI 85 (194)
Q Consensus 11 i~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~-----~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hi 85 (194)
.++|+||+|.|+|++++.+||+++|||++..+.... .....|+...+ ..+.+..... ....+..|+
T Consensus 7 ~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~i~~~~~--------~~~~g~~Hi 77 (154)
T cd07237 7 DQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNG-RHHSLALAEG--------PGPKRIHHL 77 (154)
T ss_pred CCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCC-CCCCEEEEcC--------CCCceeEEE
Confidence 467999999999999999999999999986642210 11123332222 1111111100 113578899
Q ss_pred EEeeCCHH---HHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEecC
Q 029385 86 SFQCENMA---IVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 137 (194)
Q Consensus 86 af~v~dl~---~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~ 137 (194)
+|.|+|++ +++++|++.|+++..++...+..+.+.+|++||||+.||+....
T Consensus 78 af~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~ 132 (154)
T cd07237 78 MLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGG 132 (154)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCc
Confidence 99998654 68999999999988655433323448899999999999998753
No 44
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.73 E-value=2.8e-16 Score=112.69 Aligned_cols=114 Identities=18% Similarity=0.263 Sum_probs=79.6
Q ss_pred eEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCC--cEEEEeecCCCCCCCCCCCCCCCCccEEEEeeCCHH
Q 029385 16 HISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYG--MGIHLLKSEEPDNLPKAGKNINPKDNHISFQCENMA 93 (194)
Q Consensus 16 hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g--~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~dl~ 93 (194)
++.|.|+|++++.+||+++|||+.....+ ....+...+ ..+.+...... ..+...........|++|.|+|++
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~~----~~~~~~~~~~~~~l~l~~~~~~-~~~~~~~~~~~~~~~~~~~v~did 78 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDSD----WYVSLRSPDGGVELAFMLPGHE-TVPAAQYQFQGQGLILNFEVDDVD 78 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEeccC----cEEEEecCCCceEEEEccCCCC-CCcchhcccCCceEEEEEEECCHH
Confidence 68999999999999999999999887642 122222222 23334332221 111011122334459999999999
Q ss_pred HHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEe
Q 029385 94 IVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 135 (194)
Q Consensus 94 ~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~ 135 (194)
++++++.++|+++..++... +++.+.++++||||+.|||++
T Consensus 79 ~~~~~l~~~G~~~~~~~~~~-~~g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 79 AEYERLKAEGLPIVLPLRDE-PWGQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred HHHHHHHhcCCCeeeccccC-CCcceEEEEECCCCCEEEEEC
Confidence 99999999999987665333 345589999999999999985
No 45
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.72 E-value=1.3e-16 Score=115.28 Aligned_cols=108 Identities=27% Similarity=0.440 Sum_probs=79.8
Q ss_pred eeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEEEEeeC--
Q 029385 13 SLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCE-- 90 (194)
Q Consensus 13 ~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~-- 90 (194)
+|+|+.|.|+|++++.+||+++|||++..+.+ ...|+...+..+.+..... . ....+..|++|.++
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~----~~~~~~~~~~~~~l~~~~~--~------~~~~~~~hi~f~v~~~ 68 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD----KGAYLEAGDLWLCLSVDAN--V------GPAKDYTHYAFSVSEE 68 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC----CceEEecCCEEEEEecCCC--C------CCCCCeeeEEEEeCHH
Confidence 47899999999999999999999999877653 2344433333333322111 1 12346789999995
Q ss_pred CHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEec
Q 029385 91 NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 136 (194)
Q Consensus 91 dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~ 136 (194)
|+++++++++++|+++...+. ..+ +.+||.|||||.|||+..
T Consensus 69 dl~~~~~~l~~~G~~~~~~~~-~~~---~~~~f~DPdG~~ie~~~~ 110 (121)
T cd07244 69 DFASLKEKLRQAGVKEWKENT-SEG---DSFYFLDPDGHKLELHVG 110 (121)
T ss_pred HHHHHHHHHHHcCCcccCCCC-CCc---cEEEEECCCCCEEEEEeC
Confidence 899999999999998765432 122 789999999999999964
No 46
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.72 E-value=2.7e-16 Score=113.48 Aligned_cols=116 Identities=20% Similarity=0.306 Sum_probs=79.8
Q ss_pred eeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEE-EeCC-cEEEEeecCCCC-----CC-CCCCCCCCCCccEE
Q 029385 14 LNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWL-FNYG-MGIHLLKSEEPD-----NL-PKAGKNINPKDNHI 85 (194)
Q Consensus 14 i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~-~~~g-~~~~l~~~~~~~-----~~-~~~~~~~~~g~~hi 85 (194)
+.|+.|.|+|++++.+||+++|||+....... ..|. +..+ ..+.+....... .. +... ...++..|+
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 75 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHES----GDYGELETGETTLAFASHDLAESNLKGGFVKADP-AQPPAGFEI 75 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecCC----CcEEEecCCcEEEEEEcccccccccccCccCCcc-ccCCCcEEE
Confidence 46999999999999999999999998765331 1222 2222 222232221110 00 1111 223455799
Q ss_pred EEeeCCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEe
Q 029385 86 SFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 135 (194)
Q Consensus 86 af~v~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~ 135 (194)
+|.|+|++++++++.++|+++..++... .++.+.++++|||||.|||++
T Consensus 76 ~~~v~di~~~~~~l~~~G~~~~~~~~~~-~~g~~~~~~~DPdG~~~~~~~ 124 (125)
T cd07264 76 AFVTDDVAAAFARAVEAGAVLVSEPKEK-PWGQTVAYVRDINGFLIELCS 124 (125)
T ss_pred EEEcCCHHHHHHHHHHcCCEeccCCccC-CCCcEEEEEECCCCCEEEEec
Confidence 9999999999999999999988766433 345578999999999999986
No 47
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.72 E-value=2e-16 Score=120.44 Aligned_cols=117 Identities=27% Similarity=0.373 Sum_probs=77.6
Q ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCc--ceEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEEEEee
Q 029385 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDF--DGAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQC 89 (194)
Q Consensus 12 ~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~--~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v 89 (194)
++|+||+|.|+|++++.+||+++|||++.......+. ...|+...+ ..+.+.... ...++..|++|.|
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~-~~~~i~l~~---------~~~~~~~Hiaf~v 71 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKG-GVHDTALTG---------GNGPRLHHVAFWV 71 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCC-CcceEEEec---------CCCCceeEEEEEc
Confidence 5789999999999999999999999988654321111 123332222 222221110 2235788999999
Q ss_pred CC---HHHHHHHHHhCCCeE--EccceecCccceEEEEEeCCCCCEEEEEecCC
Q 029385 90 EN---MAIVERRLKEMKIDY--VKSRVEEGGINVDQLFFHDPDGSMIEICNCDV 138 (194)
Q Consensus 90 ~d---l~~~~~~l~~~Gi~~--~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~~ 138 (194)
+| +++++++|+++|+.. ...+...+....+.+||+|||||.||+++...
T Consensus 72 ~~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~~ 125 (161)
T cd07256 72 PEPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGDY 125 (161)
T ss_pred CCHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecCc
Confidence 85 788889999999863 22222212123367999999999999997553
No 48
>PRK10291 glyoxalase I; Provisional
Probab=99.72 E-value=2e-16 Score=115.57 Aligned_cols=114 Identities=25% Similarity=0.353 Sum_probs=77.1
Q ss_pred EEEcCCHHHHHHHHHHccCCeEeeeCCCCCc--ceEEEEeCC-----cEEEEeecCCCCCCCCCCCCCCCCccEEEEeeC
Q 029385 18 SLVCRSVEASLDFYQNVLGFFPIRRPGSFDF--DGAWLFNYG-----MGIHLLKSEEPDNLPKAGKNINPKDNHISFQCE 90 (194)
Q Consensus 18 ~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~--~~~~~~~~g-----~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~ 90 (194)
.|.|+|++++++||+++|||+...+....+. ...|+ ..+ ..+++.... ..... ....+..|+||.|+
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~---~~~~~--~~g~~~~hlaf~V~ 74 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFV-GYGPETEEAVIELTYNW---GVDKY--ELGTAYGHIALSVD 74 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEE-ccCCCCCcceEEeeecC---CCCCC--cCCCCeeEEEEEeC
Confidence 3789999999999999999998775432221 12222 222 113332211 11111 22357889999999
Q ss_pred CHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEecC
Q 029385 91 NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 137 (194)
Q Consensus 91 dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~ 137 (194)
|+++++++|++.|+++...+....+...+.+||+||||+.|||++..
T Consensus 75 d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~ 121 (129)
T PRK10291 75 NAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEK 121 (129)
T ss_pred CHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEcc
Confidence 99999999999999988654332222236688999999999999865
No 49
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.72 E-value=2.5e-16 Score=113.57 Aligned_cols=116 Identities=19% Similarity=0.252 Sum_probs=76.2
Q ss_pred eEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCCcEEEEeecCCCCCC--CCCCCCCCCCccEEEE--eeCC
Q 029385 16 HISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMGIHLLKSEEPDNL--PKAGKNINPKDNHISF--QCEN 91 (194)
Q Consensus 16 hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~--~~~~~~~~~g~~hiaf--~v~d 91 (194)
||+|.|+|++++++||+++|||++..... ....+...+..+.+......... .........+..|++| .++|
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~d 77 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE----TWVDFDFFGHQLVAHLSPNFNADASDNAVDGHPVPVPHFGLILSEEE 77 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC----CcccccccCcEEEEEeccCCCcccccCCCCCCccCCceEEEEEeHHH
Confidence 99999999999999999999999876542 11111122333333322211110 0000122334567654 5679
Q ss_pred HHHHHHHHHhCCCeEEccceec-C--ccceEEEEEeCCCCCEEEEEe
Q 029385 92 MAIVERRLKEMKIDYVKSRVEE-G--GINVDQLFFHDPDGSMIEICN 135 (194)
Q Consensus 92 l~~~~~~l~~~Gi~~~~~~~~~-~--g~~~~~~~~~DPDG~~iEi~~ 135 (194)
+++++++|+++|+++..++... . ..+.+.+||+|||||.|||.+
T Consensus 78 v~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 78 FDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred HHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 9999999999999988765432 1 123589999999999999975
No 50
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.72 E-value=5.2e-16 Score=113.74 Aligned_cols=116 Identities=28% Similarity=0.382 Sum_probs=82.1
Q ss_pred eeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeC-C--cEEEEeecCCCCCCCCCCCCCCCCccEEEEee
Q 029385 13 SLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNY-G--MGIHLLKSEEPDNLPKAGKNINPKDNHISFQC 89 (194)
Q Consensus 13 ~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~-g--~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v 89 (194)
+|+||.|.|+|++++++||+++|||++..+... ....|+... + ..+.+........ . ....+..|++|.|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~--~~~~~~~~~~~~~~~l~l~~~~~~~~----~-~~~~~~~h~~f~v 73 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL--GGLVFLSRDPDEHHQIALITGRPAAP----P-PGPAGLNHIAFEV 73 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC--CcEEEEEecCCCceEEEEEecCCCCC----C-CCCCCceEEEEEe
Confidence 478999999999999999999999998776531 122343222 1 2344444332211 1 2345778999999
Q ss_pred CCHH---HHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEecCC
Q 029385 90 ENMA---IVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDV 138 (194)
Q Consensus 90 ~dl~---~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~~ 138 (194)
+|++ ++++++.+.|+++.... ..+ +.+.+||+|||||.|||++..+
T Consensus 74 ~~~~~v~~~~~~l~~~G~~~~~~~-~~~--~~~~~~~~DP~G~~ie~~~~~~ 122 (134)
T cd08348 74 DSLDDLRDLYERLRAAGITPVWPV-DHG--NAWSIYFRDPDGNRLELFVDTP 122 (134)
T ss_pred CCHHHHHHHHHHHHHCCCCccccC-CCC--ceeEEEEECCCCCEEEEEEcCC
Confidence 9755 57899999999877654 222 2388999999999999997654
No 51
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.72 E-value=6.5e-17 Score=116.24 Aligned_cols=121 Identities=25% Similarity=0.357 Sum_probs=82.5
Q ss_pred eeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCC-CC---cceEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEEEEe
Q 029385 13 SLNHISLVCRSVEASLDFYQNVLGFFPIRRPGS-FD---FDGAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQ 88 (194)
Q Consensus 13 ~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~-~~---~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~ 88 (194)
+|+||+|.|+|++++++||+++|||++...... .. ....++......+.+.....+............+..|++|.
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 80 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEGHIELFLNPSPPPRASGHSFPEHGGHHIAFL 80 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSSCEEEEEEESSSSSSEEEHHHSHTSEEEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccccceeeeeeccccccccccccccccceeEEEE
Confidence 689999999999999999999999999887641 11 11223333445666665543332211100000144567776
Q ss_pred eC---CHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEE
Q 029385 89 CE---NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEI 133 (194)
Q Consensus 89 v~---dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi 133 (194)
+. |+++++++|++.|+++...+..........+|++||||+.|||
T Consensus 81 ~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 81 AFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp ESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred eccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 65 8889999999999999987754443333556899999999997
No 52
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.72 E-value=1.8e-16 Score=118.33 Aligned_cols=112 Identities=17% Similarity=0.134 Sum_probs=81.9
Q ss_pred eeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCC-cEEEEeecCCCCCCCCCCCCCCCCccEEEEeeCC--
Q 029385 15 NHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYG-MGIHLLKSEEPDNLPKAGKNINPKDNHISFQCEN-- 91 (194)
Q Consensus 15 ~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g-~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~d-- 91 (194)
+||.|.|+|++++.+||+++|||++..+.+. ...|+...+ ...+.+.... ....+++|+||.|+|
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~~---~~~~l~~~~~~~~h~~~~~~---------~~~~gl~Hiaf~v~~~~ 68 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIED---RIVFMRCHPNPFHHTFAVGP---------ASSSHFHHVNFMVTDID 68 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeCC---EEEEEEcCCCCCcceeeecc---------CCCCceEEEEEECCCHH
Confidence 5999999999999999999999998877531 234544333 2233332211 234689999999985
Q ss_pred -HHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEecCC
Q 029385 92 -MAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDV 138 (194)
Q Consensus 92 -l~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~~ 138 (194)
+++++++|+++|+++...+........+.+||+||||+.||++....
T Consensus 69 ~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~ 116 (141)
T cd07258 69 DIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGME 116 (141)
T ss_pred HHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCcc
Confidence 56779999999999876654433233488999999999999987643
No 53
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.70 E-value=4.9e-16 Score=112.00 Aligned_cols=116 Identities=19% Similarity=0.252 Sum_probs=77.5
Q ss_pred eeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeC-CcEEEEeecCCCCCC-CCCCCCCCCCccEEEEeeC-
Q 029385 14 LNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNY-GMGIHLLKSEEPDNL-PKAGKNINPKDNHISFQCE- 90 (194)
Q Consensus 14 i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~-g~~~~l~~~~~~~~~-~~~~~~~~~g~~hiaf~v~- 90 (194)
++||+|.|+|++++++||+. |||++....+.. ...++... +..+.+......... +... ...++..|++|.|+
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~~--~~~~~~~~~~~~l~l~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 76 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADDE--PHVEAVLPGGVRLAWDTVESIRSFTPGWT-PTGGHRIALAFLCET 76 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCCC--CcEEEEeCCCEEEEEEcccceeeecCCCC-CCCCCcEEEEEEcCC
Confidence 57999999999999999975 999986554311 12222222 333433222111100 1111 22345678999875
Q ss_pred --CHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEE
Q 029385 91 --NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEIC 134 (194)
Q Consensus 91 --dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~ 134 (194)
|+++++++|++.|+++..++.. ..++.+.++|+|||||.|||+
T Consensus 77 ~~dvd~~~~~l~~~G~~~~~~~~~-~~~g~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 77 PAEVDALYAELVGAGYPGHKEPWD-APWGQRYAIVKDPDGNLVDLF 121 (122)
T ss_pred HHHHHHHHHHHHHCCCCcCCCCcc-CCCCCEEEEEECCCCCEEEEe
Confidence 8999999999999988776543 234558899999999999997
No 54
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.70 E-value=4.9e-16 Score=110.85 Aligned_cols=107 Identities=20% Similarity=0.323 Sum_probs=73.6
Q ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccE--EEEee
Q 029385 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNH--ISFQC 89 (194)
Q Consensus 12 ~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~h--iaf~v 89 (194)
.+|+||+|.|.|++++.+||+ +|||++..+. +..++...+.....+..... ...+..| ++|.+
T Consensus 1 ~~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 65 (112)
T cd08344 1 HSIDHFALEVPDLEVARRFYE-AFGLDVREEG-----DGLELRTAGNDHRWARLLEG---------ARKRLAYLSFGIFE 65 (112)
T ss_pred CceeEEEEecCCHHHHHHHHH-HhCCcEEeec-----CceEEEecCCCceEEEeecC---------CCCceeeEEEEeEh
Confidence 368999999999999999997 6999997664 23444333312111111110 0123344 45555
Q ss_pred CCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEec
Q 029385 90 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 136 (194)
Q Consensus 90 ~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~ 136 (194)
+|++++++++++.|+++...+ ... +.+.+||.|||||.|||...
T Consensus 66 ~d~~~~~~~l~~~Gi~~~~~~-~~~--~~~~~~~~DP~Gn~iel~~~ 109 (112)
T cd08344 66 DDFAAFARHLEAAGVALAAAP-PGA--DPDGVWFRDPDGNLLQVKVA 109 (112)
T ss_pred hhHHHHHHHHHHcCCceecCC-CcC--CCCEEEEECCCCCEEEEecC
Confidence 799999999999999987654 222 23679999999999999864
No 55
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.70 E-value=8e-16 Score=111.03 Aligned_cols=112 Identities=19% Similarity=0.247 Sum_probs=78.4
Q ss_pred eeeEEEEcCCHHHHHHHHHHc---cCCeEeeeCCCCCcceEEEEeC--CcEEEEeecCCCCCCCCCCCCCCCCccEEEEe
Q 029385 14 LNHISLVCRSVEASLDFYQNV---LGFFPIRRPGSFDFDGAWLFNY--GMGIHLLKSEEPDNLPKAGKNINPKDNHISFQ 88 (194)
Q Consensus 14 i~hv~l~v~Dle~s~~FY~~v---LG~~~~~~~~~~~~~~~~~~~~--g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~ 88 (194)
|+||.|.|+|++++++||+++ ||++...+... ...++... +..+.+...... .+ ....+..|++|.
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~~~~hi~f~ 71 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMEDGP---GAVGYGKGGGGPDFWVTKPFDG--EP----ATAGNGTHVAFA 71 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeecCC---ceeEeccCCCCceEEEeccccC--CC----CCCCCceEEEEE
Confidence 579999999999999999998 69998766510 12222222 234555432211 11 112345799999
Q ss_pred eCC---HHHHHHHHHhCCCeEEccceecC--ccceEEEEEeCCCCCEEEEE
Q 029385 89 CEN---MAIVERRLKEMKIDYVKSRVEEG--GINVDQLFFHDPDGSMIEIC 134 (194)
Q Consensus 89 v~d---l~~~~~~l~~~Gi~~~~~~~~~~--g~~~~~~~~~DPDG~~iEi~ 134 (194)
|++ ++++++++.+.|+.+...+.... +...+.+||+|||||.|||+
T Consensus 72 v~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 72 APSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred CCCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 996 88899999999999877654332 23346899999999999997
No 56
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.69 E-value=1.3e-15 Score=109.25 Aligned_cols=117 Identities=20% Similarity=0.278 Sum_probs=81.1
Q ss_pred eeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCC-cEEEEeecCCCCCCC-CCCCCCCCCccEEEEeeC-
Q 029385 14 LNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYG-MGIHLLKSEEPDNLP-KAGKNINPKDNHISFQCE- 90 (194)
Q Consensus 14 i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g-~~~~l~~~~~~~~~~-~~~~~~~~g~~hiaf~v~- 90 (194)
|.+|.|.|.|++++.+||+++|||++..+.+ . ...++...+ ..+.++......... ........+..|++|.++
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~~-~--~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 77 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLKED-R--RLAFFWVGGRGMLLLFDPGATSTPGGEIPPHGGSGPGHFAFAIPA 77 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeecCC-C--ceEEEEcCCCcEEEEEecCCcccccCCCCCCCCCCccEEEEEcCH
Confidence 4689999999999999999999999887532 1 223333232 334444433211000 001122457789999995
Q ss_pred -CHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEe
Q 029385 91 -NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 135 (194)
Q Consensus 91 -dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~ 135 (194)
|++++++++.++|+++..... ...+.+.+||.||||+.||+++
T Consensus 78 ~dl~~~~~~l~~~g~~~~~~~~--~~~~~~~~~~~DP~G~~ie~~~ 121 (122)
T cd08354 78 EELAEWEAHLEAKGVAIESEVQ--WPRGGRSLYFRDPDGNLLELAT 121 (122)
T ss_pred HHHHHHHHHHHhcCCceecccc--CCCCeeEEEEECCCCCEEEEec
Confidence 899999999999998876543 2233488999999999999986
No 57
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.69 E-value=2.4e-15 Score=108.52 Aligned_cols=118 Identities=12% Similarity=0.109 Sum_probs=81.5
Q ss_pred EEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcce--EEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEEEEeeCCHHH
Q 029385 17 ISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDG--AWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCENMAI 94 (194)
Q Consensus 17 v~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~--~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~dl~~ 94 (194)
..|.|+|++++++||+++||+++..+....+... ..+...+..+.+........... ......+..|++|.|+|+++
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~v~d~d~ 81 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGDGGVMVGSVRDDYRASS-ARAGGAGTQGVYVVVDDVDA 81 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECCEEEEEecCCCcccccc-cccCCCceEEEEEEECCHHH
Confidence 5789999999999999999999987652111111 12222333455543332211111 11234567899999999999
Q ss_pred HHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEec
Q 029385 95 VERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 136 (194)
Q Consensus 95 ~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~ 136 (194)
+++++.+.|+++..++.... ++.+.++++|||||.|+|.++
T Consensus 82 ~~~~l~~~G~~v~~~~~~~~-~g~~~~~~~DPdG~~~~l~~~ 122 (122)
T cd08355 82 HYERARAAGAEILREPTDTP-YGSREFTARDPEGNLWTFGTY 122 (122)
T ss_pred HHHHHHHCCCEEeeCccccC-CCcEEEEEECCCCCEEEEecC
Confidence 99999999999987764432 445889999999999999753
No 58
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.69 E-value=9.5e-16 Score=111.09 Aligned_cols=116 Identities=17% Similarity=0.155 Sum_probs=78.4
Q ss_pred eeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEe-CCcEEEEeecCCCCCCCCCC--CCCCCCccEEEEeeC-
Q 029385 15 NHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFN-YGMGIHLLKSEEPDNLPKAG--KNINPKDNHISFQCE- 90 (194)
Q Consensus 15 ~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~-~g~~~~l~~~~~~~~~~~~~--~~~~~g~~hiaf~v~- 90 (194)
.+|.|.|+|++++++||++ |||+...+.... ...++.. .+..+.+............. .....+..|++|.|+
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~--~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~f~v~~ 78 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTA-LGFEFNPQFSDE--KAACMVISDNIFVMLLTEDFFQTFTPKPIADTKKSTEVLISLSADS 78 (124)
T ss_pred EEEEeecCCHHHHHHHHHH-CCCEEccccCCC--CeEEEEECCceEEEEEcHHHHhhccCCCcccCCCCCeEEEEEeCCC
Confidence 5799999999999999987 899987543221 2233332 23455555432111100000 012345679999998
Q ss_pred --CHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEe
Q 029385 91 --NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 135 (194)
Q Consensus 91 --dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~ 135 (194)
++++++++++++|+++..++...++ .+.+||+|||||.|||+.
T Consensus 79 ~~~vd~~~~~l~~~G~~i~~~p~~~~~--~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 79 REEVDELVEKALAAGGKEFREPQDHGF--MYGRSFADLDGHLWEVLW 123 (124)
T ss_pred HHHHHHHHHHHHHCCCcccCCcccCCc--eEEEEEECCCCCEEEEEE
Confidence 5889999999999998876544332 378899999999999984
No 59
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.68 E-value=8.3e-16 Score=108.16 Aligned_cols=103 Identities=30% Similarity=0.517 Sum_probs=75.4
Q ss_pred EEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCCcE-----EEEeecCCCCCCCCCCCCCCCCccEEEEeeCCHH
Q 029385 19 LVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMG-----IHLLKSEEPDNLPKAGKNINPKDNHISFQCENMA 93 (194)
Q Consensus 19 l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g~~-----~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~dl~ 93 (194)
|.|+|++++++||+++|||++....+ .... +..+.. ..+...... .....+..|++|.|+|++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~dv~ 68 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP----DYVD-FSLGFRFHDGVIEFLQFPDP-------PGPPGGGFHLCFEVEDVD 68 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET----SEEE-EEETEEEEEEEEEEEEEESS-------SSSSSSEEEEEEEESHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC----CeEE-EEeccchhhhhHHHccCCcc-------ccCCCceeEEEEEEcCHH
Confidence 68999999999999999999999553 2222 222322 233332211 133568899999999999
Q ss_pred HHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEE
Q 029385 94 IVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEIC 134 (194)
Q Consensus 94 ~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~ 134 (194)
++++++.++|+++..++.... ++.+.+++.|||||.|||+
T Consensus 69 ~~~~~l~~~G~~~~~~~~~~~-~g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 69 ALYERLKELGAEIVTEPRDDP-WGQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHHHHHTTSEEEEEEEEET-TSEEEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHCCCeEeeCCEEcC-CCeEEEEEECCCCCEEEeC
Confidence 999999999999887765533 3459999999999999996
No 60
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.68 E-value=7.5e-16 Score=128.17 Aligned_cols=121 Identities=20% Similarity=0.222 Sum_probs=81.3
Q ss_pred CCcccceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCc---ceEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCcc
Q 029385 7 NPLCLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDF---DGAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDN 83 (194)
Q Consensus 7 ~~~~i~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~---~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~ 83 (194)
..+.+++|+||+|.|+|++++.+||+++|||++..+....+. ...|+.. +...+.+... .. ....+.+
T Consensus 139 ~~~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~--~~~g~~~ 209 (303)
T TIGR03211 139 RGVGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSV-SNKAHDIAFV------GD--PEPGKLH 209 (303)
T ss_pred CCcCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEc-CCCCccccee------cC--CCCCceE
Confidence 346788999999999999999999999999998655321111 1223322 2122211110 00 1122388
Q ss_pred EEEEeeCC---HHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEec
Q 029385 84 HISFQCEN---MAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 136 (194)
Q Consensus 84 hiaf~v~d---l~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~ 136 (194)
|+||.|+| ++++.++|+++|+++..++...+....+.+||+|||||+||++..
T Consensus 210 Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 265 (303)
T TIGR03211 210 HVSFFLDSWEDVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFGG 265 (303)
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEecC
Confidence 99999996 555788999999998765533222223799999999999999843
No 61
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.68 E-value=1.6e-15 Score=108.04 Aligned_cols=109 Identities=17% Similarity=0.287 Sum_probs=79.4
Q ss_pred EEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEE-eCCcEEEEeecCCCCCCCCCCCCCCCCccEEEEeeCC---H
Q 029385 17 ISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLF-NYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCEN---M 92 (194)
Q Consensus 17 v~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~-~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~d---l 92 (194)
+.|.|+|++++++||+++||+++..... ...++. ..+..+.++....... .. ....+..|++|.|++ +
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~---~~-~~~~~~~~~~~~v~~~~~~ 73 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELSP----TFALFVLGSGVKLGLWSRHTVEP---AS-DATGGGSELAFMVDDGAAV 73 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCCC----ceEEEEeCCCcEEEEeeccccCC---CC-CCCCCceEEEEEcCCHHHH
Confidence 6799999999999999999999876542 222222 2345566654432211 11 235677899999985 8
Q ss_pred HHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEe
Q 029385 93 AIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 135 (194)
Q Consensus 93 ~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~ 135 (194)
+++++++.+.|+++..++.. .+++ +.++|+|||||.|||+.
T Consensus 74 ~~~~~~~~~~g~~v~~~~~~-~~~g-~~~~~~DPdGn~ie~~~ 114 (114)
T cd07261 74 DALYAEWQAKGVKIIQEPTE-MDFG-YTFVALDPDGHRLRVFA 114 (114)
T ss_pred HHHHHHHHHCCCeEecCccc-cCCc-cEEEEECCCCCEEEeeC
Confidence 89999999999998876643 3344 68899999999999973
No 62
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.68 E-value=2.1e-15 Score=108.52 Aligned_cols=111 Identities=22% Similarity=0.351 Sum_probs=79.0
Q ss_pred eeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEEEEeeCC---
Q 029385 15 NHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCEN--- 91 (194)
Q Consensus 15 ~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~d--- 91 (194)
.|+.|.|+|++++.+||+++||++...+.+. ...|... +..+.+.....+. ....+..|++|.|++
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~-------~~~~~~~h~~f~v~~~~d 71 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRDD---YAKFLLE-DPRLNFVLNERPG-------APGGGLNHLGVQVDSAEE 71 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccCC---eeEEEec-CCceEEEEecCCC-------CCCCCeeEEEEEeCCHHH
Confidence 4999999999999999999999998766431 1233333 2244443322111 111578899999986
Q ss_pred HHHHHHHHHhCCCeEEccceecC-ccceEEEEEeCCCCCEEEEEec
Q 029385 92 MAIVERRLKEMKIDYVKSRVEEG-GINVDQLFFHDPDGSMIEICNC 136 (194)
Q Consensus 92 l~~~~~~l~~~Gi~~~~~~~~~~-g~~~~~~~~~DPDG~~iEi~~~ 136 (194)
++++++++.+.|+++...+.... +...+.+|++|||||.|||+..
T Consensus 72 l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 117 (120)
T cd07254 72 VAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVT 117 (120)
T ss_pred HHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEe
Confidence 89999999999999886542221 1123789999999999999974
No 63
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.68 E-value=1.7e-15 Score=110.96 Aligned_cols=115 Identities=27% Similarity=0.299 Sum_probs=79.9
Q ss_pred eeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCC-cceEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEEEEeeCCHH
Q 029385 15 NHISLVCRSVEASLDFYQNVLGFFPIRRPGSFD-FDGAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCENMA 93 (194)
Q Consensus 15 ~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~-~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~dl~ 93 (194)
+||.|.|+|++++.+||+++|||++........ ....|+...+....+..... ....+..|++|.|+|++
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~hl~~~v~d~~ 71 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDPGVDAAAFLRCDEDHHDLALFPG---------PERPGLHHVAFEVESLD 71 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccCCceeEEEEEcCCCcceEEEEcC---------CCCCCeeEEEEEcCCHH
Confidence 599999999999999999999999876543110 12344433232222211111 11457889999999764
Q ss_pred ---HHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEecCC
Q 029385 94 ---IVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDV 138 (194)
Q Consensus 94 ---~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~~ 138 (194)
++++++++.|+++...+...+..+.+.+||+||||+.|||++..+
T Consensus 72 ~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 119 (131)
T cd08343 72 DILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMY 119 (131)
T ss_pred HHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCc
Confidence 788999999999886554333223478899999999999997543
No 64
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.68 E-value=2.8e-15 Score=106.54 Aligned_cols=106 Identities=20% Similarity=0.229 Sum_probs=76.0
Q ss_pred eEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCC---cEEEEeecCCCCCCCCCCCCCCCCccEEEEeeCCH
Q 029385 16 HISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYG---MGIHLLKSEEPDNLPKAGKNINPKDNHISFQCENM 92 (194)
Q Consensus 16 hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g---~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~dl 92 (194)
+..|.|+|++++.+||+++|||+.....+ ...++...+ ..+.+.... . ......|++|.|+|+
T Consensus 3 ~~~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~~~i~~~v~d~ 68 (112)
T cd07238 3 VPNLPVADPEAAAAFYADVLGLDVVMDHG----WIATFASPQNMTVQVSLATEG--G--------TATVVPDLSIEVDDV 68 (112)
T ss_pred cceEecCCHHHHHHHHHHhcCceEEEcCC----ceEEEeecCCCCcEEEEecCC--C--------CCCCCCEEEEEeCCH
Confidence 45789999999999999999999865431 112222222 223333211 1 112356999999999
Q ss_pred HHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEec
Q 029385 93 AIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 136 (194)
Q Consensus 93 ~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~ 136 (194)
+++++++++.|+++...+... .++.+.+|+.|||||.|||++.
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~-~~g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 69 DAALARAVAAGFAIVYGPTDE-PWGVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHHHHHhcCCeEecCCccC-CCceEEEEEECCCCCEEEEEEc
Confidence 999999999999988765432 2445889999999999999974
No 65
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.68 E-value=2.5e-15 Score=106.10 Aligned_cols=110 Identities=22% Similarity=0.292 Sum_probs=78.9
Q ss_pred EEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEEEEeeCCHHHHH
Q 029385 17 ISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCENMAIVE 96 (194)
Q Consensus 17 v~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~dl~~~~ 96 (194)
..|.|+|++++++||+++|||+...+.+.. ...++...+..+++....... + ....+..|++|.|+|+++++
T Consensus 2 ~~i~v~d~~~s~~FY~~~lg~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~ 73 (112)
T cd08349 2 PVLPVSDIERSLAFYRDVLGFEVDWEHPEP--GYAFLSRGGAQLMLSEHDGDE--P----VPLGRGGSVYIEVEDVDALY 73 (112)
T ss_pred CEEEECCHHHHHHHHHhccCeEEEEEcCCC--cEEEEEeCCEEEEEeccCCCC--C----CCCCCcEEEEEEeCCHHHHH
Confidence 368999999999999999999988776311 223333344455555433211 1 12346679999999999999
Q ss_pred HHHHhCCCe-EEccceecCccceEEEEEeCCCCCEEEEEe
Q 029385 97 RRLKEMKID-YVKSRVEEGGINVDQLFFHDPDGSMIEICN 135 (194)
Q Consensus 97 ~~l~~~Gi~-~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~ 135 (194)
+++++.|+. +..++.. ..++.+.+++.||||+.||+++
T Consensus 74 ~~l~~~G~~~~~~~~~~-~~~g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 74 AELKAKGADLIVYPPED-QPWGMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHHHcCCcceecCccC-CCcccEEEEEECCCCCEEEecC
Confidence 999999998 4544432 2334589999999999999975
No 66
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.67 E-value=4.7e-15 Score=106.28 Aligned_cols=116 Identities=17% Similarity=0.072 Sum_probs=81.6
Q ss_pred eEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcc--eEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEEEEeeCCHH
Q 029385 16 HISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFD--GAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCENMA 93 (194)
Q Consensus 16 hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~--~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~dl~ 93 (194)
-+.|.|+|++++.+||+++||+++..+....+.. ...+...+..+.+.... +... .......+..|++|.|+|++
T Consensus 4 ~~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~~~~--~~~~~~~~~~~~~~~v~d~~ 80 (122)
T cd07246 4 TPYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGDSVLMLADEF-PEHG--SPASWGGTPVSLHLYVEDVD 80 (122)
T ss_pred eEEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECCEEEEEecCC-cccC--CCCCCCCceEEEEEEeCCHH
Confidence 3678999999999999999999998765322111 12222334445444322 1111 11123456789999999999
Q ss_pred HHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEe
Q 029385 94 IVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 135 (194)
Q Consensus 94 ~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~ 135 (194)
++++++.+.|+++..++... .++.+.++++||||+.|+|++
T Consensus 81 ~~~~~l~~~G~~~~~~~~~~-~~g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 81 ATFARAVAAGATSVMPPADQ-FWGDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred HHHHHHHHCCCeEecCcccc-cccceEEEEECCCCCEEEEec
Confidence 99999999999988776433 345589999999999999986
No 67
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.66 E-value=4e-15 Score=107.26 Aligned_cols=107 Identities=16% Similarity=0.253 Sum_probs=76.6
Q ss_pred eEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEEEEeeCCHHHH
Q 029385 16 HISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCENMAIV 95 (194)
Q Consensus 16 hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~dl~~~ 95 (194)
...|.|+|++++++||++ |||+...+... ...++...+..+++...... .......|++|.|+|++++
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~---~~~~~~~~~~~l~l~~~~~~--------~~~~~~~~~~~~v~dvd~~ 72 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQAA---GYMILRRGDLELHFFAHPDL--------DPATSPFGCCLRLPDVAAL 72 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCCC---CEEEEEcCCEEEEEEecCcC--------CCCCCcceEEEEeCCHHHH
Confidence 578999999999999999 99998876631 11222234445666653311 1112346899999999999
Q ss_pred HHHHHhCCCeEE-------ccceecCccceEEEEEeCCCCCEEEEEe
Q 029385 96 ERRLKEMKIDYV-------KSRVEEGGINVDQLFFHDPDGSMIEICN 135 (194)
Q Consensus 96 ~~~l~~~Gi~~~-------~~~~~~~g~~~~~~~~~DPDG~~iEi~~ 135 (194)
+++|+++|+.+. .++ ....++.+.++|+|||||.|||.+
T Consensus 73 ~~~l~~~G~~~~~~~~~~~~~~-~~~~~g~~~~~~~DPdG~~ie~~~ 118 (120)
T cd08350 73 HAEFRAAGLPETGSGIPRITPP-EDQPWGMREFALVDPDGNLLRFGQ 118 (120)
T ss_pred HHHHHHhCccccccCCCcccCC-cCCCCceeEEEEECCCCCEEEeec
Confidence 999999999853 121 111245689999999999999987
No 68
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.65 E-value=4.4e-15 Score=103.12 Aligned_cols=112 Identities=28% Similarity=0.442 Sum_probs=82.4
Q ss_pred eEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEEEEeeCCHHHH
Q 029385 16 HISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCENMAIV 95 (194)
Q Consensus 16 hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~dl~~~ 95 (194)
|+.+.|+|++++.+||+++||++.............++...+..+++......... ....+..|++|.|+|++++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~ 75 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGNGGAEFAVLGLGGTRLELFEGDEPAPA-----PSGGGGVHLAFEVDDVDAA 75 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeeccCCEEEEEEecCCceEEEecCCCCCCc-----ccCCCeeEEEEECCCHHHH
Confidence 89999999999999999999999888874211122222223456666665432211 2345788999999999999
Q ss_pred HHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEE
Q 029385 96 ERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEI 133 (194)
Q Consensus 96 ~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi 133 (194)
++++.+.|+.+...+.. ...+.+.+++.||+|+.||+
T Consensus 76 ~~~l~~~g~~~~~~~~~-~~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 76 YERLKAAGVEVLGEPRE-EPWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHHcCCcccCCCcC-CCCCcEEEEEECCCCcEEeC
Confidence 99999999988876531 22234999999999999986
No 69
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.65 E-value=4.3e-15 Score=106.46 Aligned_cols=106 Identities=15% Similarity=0.156 Sum_probs=74.8
Q ss_pred eEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEEEEeeCCHHHH
Q 029385 16 HISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCENMAIV 95 (194)
Q Consensus 16 hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~dl~~~ 95 (194)
-..|.|+|++++++||++ |||++..+.+ ..+++...+..+.+...... ......+++|.|+|++++
T Consensus 4 ~~~l~v~Dl~~s~~FY~~-LGf~~~~~~~----~~~~l~~~~~~l~l~~~~~~---------~~~~~~~~~~~v~did~~ 69 (113)
T cd08356 4 RPFIPAKDFAESKQFYQA-LGFELEWEND----NLAYFRLGNCAFYLQDYYVK---------DWAENSMLHLEVDDLEAY 69 (113)
T ss_pred eeccccccHHHHHHHHHH-hCCeeEecCC----CEEEEEcCCEEEEeecCCCc---------ccccCCEEEEEECCHHHH
Confidence 357889999999999988 9999988753 33444444444544322111 112346899999999999
Q ss_pred HHHHHhCCCeEEccc----eecCccceEEEEEeCCCCCEEEEEe
Q 029385 96 ERRLKEMKIDYVKSR----VEEGGINVDQLFFHDPDGSMIEICN 135 (194)
Q Consensus 96 ~~~l~~~Gi~~~~~~----~~~~g~~~~~~~~~DPDG~~iEi~~ 135 (194)
+++|+++|+++..+. .....++.+.++|+|||||.|+|.+
T Consensus 70 ~~~l~~~G~~~~~~~~~~~~~~~~~g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 70 YEHIKALGLPKKFPGVKLPPITQPWWGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHHHcCCcccccceecCccccCCCcEEEEEECCCccEEEeeC
Confidence 999999998753211 1122345699999999999999864
No 70
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.65 E-value=4.7e-15 Score=123.38 Aligned_cols=114 Identities=22% Similarity=0.337 Sum_probs=82.9
Q ss_pred cceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCC--cEEEEeecCCCCCCCCCCCCCCCCccEEEEe
Q 029385 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYG--MGIHLLKSEEPDNLPKAGKNINPKDNHISFQ 88 (194)
Q Consensus 11 i~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g--~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~ 88 (194)
+++|+||.|.|+|++++.+||+++|||++..+.+ ...++...+ ....+.... ....+..|++|.
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~----~~~~~~~~~~~~~~~~~l~~----------~~~~g~~hiaf~ 67 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDG----QRVYLKAWDEWDHYSVILTE----------ADTAGLDHMAFK 67 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecC----ceEEEEeccccccceEeecc----------CCCCceeEEEEE
Confidence 6789999999999999999999999999887653 233332221 111111111 123468899999
Q ss_pred eC---CHHHHHHHHHhCCCeEEccce-ecCccceEEEEEeCCCCCEEEEEecCCC
Q 029385 89 CE---NMAIVERRLKEMKIDYVKSRV-EEGGINVDQLFFHDPDGSMIEICNCDVL 139 (194)
Q Consensus 89 v~---dl~~~~~~l~~~Gi~~~~~~~-~~~g~~~~~~~~~DPDG~~iEi~~~~~~ 139 (194)
|+ ++++++++|++.|+++...+. ...+. .+.+||+||||+.|||++....
T Consensus 68 v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~-g~~~~~~DPdG~~iEl~~~~~~ 121 (303)
T TIGR03211 68 VESEADLERLVKRLEAYGVGTGWIPAGELPGV-GRRVRFTLPSGHTMELYAEKEY 121 (303)
T ss_pred eCCHHHHHHHHHHHHHcCCCeeeccCCCCCCc-ceEEEEECCCCCEEEEEEcccc
Confidence 98 799999999999999875442 11222 3789999999999999986543
No 71
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.64 E-value=5.9e-15 Score=122.14 Aligned_cols=120 Identities=24% Similarity=0.398 Sum_probs=80.7
Q ss_pred CcccceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcc--eEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEE
Q 029385 8 PLCLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFD--GAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHI 85 (194)
Q Consensus 8 ~~~i~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~--~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hi 85 (194)
.+.+++|+||+|.|+|++++.+||+++|||++..+....... ..|+...+ ..+.+... . ..+++.+|+
T Consensus 131 ~~~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~-~~~~~~~Hi 200 (294)
T TIGR02295 131 GVSPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKG-GVHDIALT--------N-GNGPRLHHI 200 (294)
T ss_pred CccceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCC-CcCceEee--------c-CCCCceeeE
Confidence 357889999999999999999999999999987653211111 22322111 11111110 0 223688999
Q ss_pred EEeeCC---HHHHHHHHHhCCCe--EEccceecCccceEEEEEeCCCCCEEEEEecC
Q 029385 86 SFQCEN---MAIVERRLKEMKID--YVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 137 (194)
Q Consensus 86 af~v~d---l~~~~~~l~~~Gi~--~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~ 137 (194)
||.|+| ++++.++|++.|++ +...+...+......+|++||+||.||+++..
T Consensus 201 af~v~d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~ 257 (294)
T TIGR02295 201 AYWVHDPLNIIKACDILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGD 257 (294)
T ss_pred EEEcCCHHHHHHHHHHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEecc
Confidence 999997 55678999999987 44433222211236799999999999999754
No 72
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.63 E-value=1.1e-14 Score=104.12 Aligned_cols=115 Identities=21% Similarity=0.223 Sum_probs=78.3
Q ss_pred EEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCCcEEEEeecCCCCCCCCCC-CCCCCCccEEEEee---CCH
Q 029385 17 ISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMGIHLLKSEEPDNLPKAG-KNINPKDNHISFQC---ENM 92 (194)
Q Consensus 17 v~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~-~~~~~g~~hiaf~v---~dl 92 (194)
|.|.|+|++++.+||+++|||++..+.. . ...++...+..+++............. .....+..|++|.+ +|+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~~-~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 78 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADSN-D--GVAFFQLGGLVLALFPREELAKDAGVPVPPPGFSGITLAHNVRSEEEV 78 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccCC-C--ceEEEEcCCeEEEEecchhhhhhcCCCCCCCCccceEEEEEcCCHHHH
Confidence 7899999999999999999999887722 1 233333344455555432211111111 02233455677765 589
Q ss_pred HHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEe
Q 029385 93 AIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 135 (194)
Q Consensus 93 ~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~ 135 (194)
+++++++.+.|+++..++... .++.+.++++|||||+|||+.
T Consensus 79 ~~~~~~l~~~G~~~~~~~~~~-~~g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 79 DAVLARAAAAGATIVKPPQDV-FWGGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred HHHHHHHHhCCCEEecCCccC-CCCceEEEEECCCCCEEEEee
Confidence 999999999999988765332 334589999999999999975
No 73
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.63 E-value=6.5e-15 Score=121.71 Aligned_cols=113 Identities=15% Similarity=0.210 Sum_probs=81.6
Q ss_pred cceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceE-EEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEEEEee
Q 029385 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGA-WLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQC 89 (194)
Q Consensus 11 i~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~-~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v 89 (194)
|.+|+|+.|.|+|++++.+||+++|||+...+.+ .+. |+...+....+.....+ ..+..|++|.|
T Consensus 1 ~~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~----~~~~~~~~~~~~~~~~l~~~~----------~~~~~~~~f~V 66 (286)
T TIGR03213 1 VRGLGYLGIGVSDVDAWREFATEVLGMMVASEGE----NDALYLRLDSRAHRIAVHPGE----------SDDLAYAGWEV 66 (286)
T ss_pred CceeeEEEEEeCCHHHHHHHHHhccCcccccCCC----CceEEEEcCCCceEEEEEECC----------cCCeeeEeeee
Confidence 5789999999999999999999999999876543 233 32322223333222211 13567999999
Q ss_pred CC---HHHHHHHHHhCCCeEEcccee--cCccceEEEEEeCCCCCEEEEEecC
Q 029385 90 EN---MAIVERRLKEMKIDYVKSRVE--EGGINVDQLFFHDPDGSMIEICNCD 137 (194)
Q Consensus 90 ~d---l~~~~~~l~~~Gi~~~~~~~~--~~g~~~~~~~~~DPDG~~iEi~~~~ 137 (194)
++ ++++.++|++.|+++...+.. ......+.+||.|||||.||++...
T Consensus 67 ~~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~~ 119 (286)
T TIGR03213 67 ADEAGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYGA 119 (286)
T ss_pred CCHHHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEcc
Confidence 97 899999999999998764421 1112347899999999999999743
No 74
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.62 E-value=1.3e-14 Score=119.88 Aligned_cols=117 Identities=19% Similarity=0.187 Sum_probs=79.7
Q ss_pred cceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCC--C---CcceEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEE
Q 029385 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGS--F---DFDGAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHI 85 (194)
Q Consensus 11 i~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~--~---~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hi 85 (194)
+.+|+||.|.|+|++++.+||+++|||++..+... . .+...|+...+....+..... ...++.+|+
T Consensus 140 ~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~l~~~---------~~~~~~~Hi 210 (286)
T TIGR03213 140 DQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNERHHSLAFAAG---------PSEKRLNHL 210 (286)
T ss_pred CccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCCcceEEEecC---------CCCCceEEE
Confidence 56899999999999999999999999998665211 1 011334333221111211110 124578999
Q ss_pred EEeeCCHHH---HHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEecC
Q 029385 86 SFQCENMAI---VERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 137 (194)
Q Consensus 86 af~v~dl~~---~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~ 137 (194)
||.|+|+++ ++++|++.|+ ....+...+..+...+|++||||+.||+.+..
T Consensus 211 af~v~d~~~v~~~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~~~ 264 (286)
T TIGR03213 211 MLEVDTLDDVGLALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGWGA 264 (286)
T ss_pred EEEcCCHHHHHHHHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeecCc
Confidence 999997666 7999999999 44333222223458899999999999998753
No 75
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.62 E-value=1.1e-14 Score=120.60 Aligned_cols=110 Identities=18% Similarity=0.216 Sum_probs=82.1
Q ss_pred cceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCC-c-EEEEeecCCCCCCCCCCCCCCCCccEEEEe
Q 029385 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYG-M-GIHLLKSEEPDNLPKAGKNINPKDNHISFQ 88 (194)
Q Consensus 11 i~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g-~-~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~ 88 (194)
|.+|+||.|.|+|++++++||+++|||++..+.+ ...|+...+ . ...+.... ....+..|++|.
T Consensus 2 i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~----~~~~~~~~~~~~~~~l~l~~----------~~~~~~~hiaf~ 67 (294)
T TIGR02295 2 ILRTGHVELRVTDLDKSREFYVDLLGFRETESDK----EYIYLRGIEEFQHHSLVLTK----------APSAALSYIGFR 67 (294)
T ss_pred CceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC----CeEEEeccCcCCceEEEeee----------CCCcCccEEEEE
Confidence 6789999999999999999999999999887653 334443221 1 11122111 112467899999
Q ss_pred eC---CHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEecC
Q 029385 89 CE---NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 137 (194)
Q Consensus 89 v~---dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~ 137 (194)
|+ |+++++++|++.|+++...+. . ...+.+||+|||||.|||+...
T Consensus 68 v~~~~dl~~~~~~l~~~Gv~v~~~~~--~-~~~~~~~~~DPdG~~iEl~~~~ 116 (294)
T TIGR02295 68 VSKEEDLDKAADFFQKLGHPVRLVRD--G-GQPEALRVEDPFGYPIEFYFEM 116 (294)
T ss_pred eCCHHHHHHHHHHHHhcCCcEEeecC--C-CCceEEEEECCCCCEEEEEEch
Confidence 97 899999999999999876442 1 2238999999999999999854
No 76
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.62 E-value=2.7e-14 Score=104.71 Aligned_cols=108 Identities=14% Similarity=0.260 Sum_probs=72.8
Q ss_pred eeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCC---------cceEE---EEeC---C--cEEEEeecCCCCCCCCCC
Q 029385 13 SLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFD---------FDGAW---LFNY---G--MGIHLLKSEEPDNLPKAG 75 (194)
Q Consensus 13 ~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~---------~~~~~---~~~~---g--~~~~l~~~~~~~~~~~~~ 75 (194)
++.|+.|.|+|+++|++||+++|||++..+....+ +++.| .+.. . ..++|....... + .
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~--~-~- 77 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIG--D-Y- 77 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCC--C-C-
Confidence 57899999999999999999999999877653221 11222 1222 1 234455432211 1 1
Q ss_pred CCCCCCccEEEEeeCCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEe
Q 029385 76 KNINPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 135 (194)
Q Consensus 76 ~~~~~g~~hiaf~v~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~ 135 (194)
.. |..|++|.|++. ++.++|+++|+++...+. ..+|+.||||+.|||..
T Consensus 78 -~~--g~~~~hlav~~~-d~~~~l~~~Gv~~~~~~~-------~~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 78 -EL--GNDFLGITIHSK-QAVSNAKKHNWPVTEVED-------GVYEVKAPGGYKFYLID 126 (127)
T ss_pred -CC--CCCEEEEEEECH-HHHHHHHHCCCceecCCC-------CEEEEECCCCCEEEEec
Confidence 11 123677777776 566999999999886442 27899999999999974
No 77
>PLN02300 lactoylglutathione lyase
Probab=99.49 E-value=7.5e-13 Score=109.60 Aligned_cols=123 Identities=15% Similarity=0.154 Sum_probs=87.0
Q ss_pred ccceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCC--CCcceEEEEeCC----cEEEEeecCCCCCCCCCCCCCCCCcc
Q 029385 10 CLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGS--FDFDGAWLFNYG----MGIHLLKSEEPDNLPKAGKNINPKDN 83 (194)
Q Consensus 10 ~i~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~--~~~~~~~~~~~g----~~~~l~~~~~~~~~~~~~~~~~~g~~ 83 (194)
....+.|+.|.|+|++++.+||+++|||+...+... ..+...++-..+ ..+++..... . ... ..+++..
T Consensus 151 ~~~~~~~~~l~~~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~---~-~~~-~~g~~~~ 225 (286)
T PLN02300 151 TPEPLCQVMLRVGDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYG---V-TEY-TKGNAYA 225 (286)
T ss_pred CCCcceeEEEEeCCHHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeecCC---C-Ccc-ccCCcee
Confidence 356788999999999999999999999998764321 112223221111 1233322111 1 011 2246778
Q ss_pred EEEEeeCCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEecC
Q 029385 84 HISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 137 (194)
Q Consensus 84 hiaf~v~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~ 137 (194)
|++|.|+|++++++++.++|+.+..++...++.+.+.++|+||||+.++|++..
T Consensus 226 ~i~~~v~di~~~~~~~~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~ 279 (286)
T PLN02300 226 QIAIGTDDVYKTAEAIKLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDNI 279 (286)
T ss_pred EEEEecCCHHHHHHHHHHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEccc
Confidence 999999999999999999999999876555554447899999999999999764
No 78
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=7.2e-13 Score=98.33 Aligned_cols=124 Identities=24% Similarity=0.303 Sum_probs=87.9
Q ss_pred cceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCC---------------------CCCcceEEEEeCCcEEEEeecCCCC
Q 029385 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPG---------------------SFDFDGAWLFNYGMGIHLLKSEEPD 69 (194)
Q Consensus 11 i~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~---------------------~~~~~~~~~~~~g~~~~l~~~~~~~ 69 (194)
.-.+.|..+.+.|+.++..||+.++|+.+..+.. .....+.|+......+++.....++
T Consensus 20 t~~~~~t~~rvkd~~~Sl~fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~v~~~~~~~~~ELthn~Gte 99 (170)
T KOG2944|consen 20 TYLLQQTMLRVKDPTGSLKFYTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVSVFVFSRNAKLELTHNWGTE 99 (170)
T ss_pred hhhhhhceeecccchhhhhhhhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCceEEecccCceeeecCCCCC
Confidence 3345677777777777777777777776655421 1111236666666678888777666
Q ss_pred CCCCCC---CCCCC-CccEEEEeeCCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEec
Q 029385 70 NLPKAG---KNINP-KDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 136 (194)
Q Consensus 70 ~~~~~~---~~~~~-g~~hiaf~v~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~ 136 (194)
+.+... +...+ |.+||||.|+|+..+..+|++.||++...+. .|.....+|+.||||+.|||...
T Consensus 100 s~~~~~~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~~--dGk~K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 100 SPPDQAYLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKLK--DGKMKPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred CCcchhhcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecCC--CccccceeEEECCCCCeEEEeec
Confidence 655222 34445 8999999999999999999999999776552 23224789999999999999864
No 79
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.43 E-value=7.6e-13 Score=94.18 Aligned_cols=95 Identities=22% Similarity=0.353 Sum_probs=71.7
Q ss_pred eeEEEEcCCHHHHHHHHHHccCCeEeeeCCC--CCcceEEEEeCC--cEEEEeecCCCCCCCCCCCCCCCCccEEEEeeC
Q 029385 15 NHISLVCRSVEASLDFYQNVLGFFPIRRPGS--FDFDGAWLFNYG--MGIHLLKSEEPDNLPKAGKNINPKDNHISFQCE 90 (194)
Q Consensus 15 ~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~--~~~~~~~~~~~g--~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~ 90 (194)
+||+|.|+|++++++||+++||+....+... ......++...+ ..++|++...+.+... ....|++||||.|+
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~~~~~~~~---~~~~gi~Hia~~v~ 77 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPLDGDSPLD---RGGGGIHHIAFEVD 77 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEESSTTCHHH---HTSSEEEEEEEEES
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeCCCCcccc---cCCCCEEEEEEEeC
Confidence 6999999999999999999999987655321 222344554444 5789998776542111 35679999999999
Q ss_pred CHHHHHHHHHhCCCeEEcccee
Q 029385 91 NMAIVERRLKEMKIDYVKSRVE 112 (194)
Q Consensus 91 dl~~~~~~l~~~Gi~~~~~~~~ 112 (194)
|+++..++|++.|+++......
T Consensus 78 D~d~~~~~l~~~G~~~~~~~~~ 99 (109)
T PF13669_consen 78 DLDAAIARLEAQGFRVLDEGPR 99 (109)
T ss_dssp HHHHHHHHHHHTTECEEECEEE
T ss_pred CHHHHHHHHHHCCCEEcccCcc
Confidence 9999999999999998876533
No 80
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.38 E-value=2.5e-11 Score=88.29 Aligned_cols=117 Identities=16% Similarity=0.145 Sum_probs=83.4
Q ss_pred cceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCC--cEEEEeecCCCCCCCCCCCCCCCCccEEEEe
Q 029385 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYG--MGIHLLKSEEPDNLPKAGKNINPKDNHISFQ 88 (194)
Q Consensus 11 i~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g--~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~ 88 (194)
...+.|..|.++|++++.+||+++||++.....+..+.....+...+ .+=-+.... .. ....+...+.|.
T Consensus 7 ~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~~~y~~f~~~~~~~gG~l~~~~------~~--~p~~~~~~iy~~ 78 (127)
T COG3324 7 KGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGEMRYAVFPADGAGAGGGLMARP------GS--PPGGGGWVIYFA 78 (127)
T ss_pred CCccEEEeeecCCHHHHHHHHHHhhCceecccccCCCceEEEEECCCccccceeccCC------cC--CCCCCCEEEEEe
Confidence 45677999999999999999999999998776432111212211111 111111110 00 112566789999
Q ss_pred eCCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEec
Q 029385 89 CENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 136 (194)
Q Consensus 89 v~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~ 136 (194)
|+|+++..++..++|-.++.++.+-++. .+.+.+.||+||.|-|.+.
T Consensus 79 v~did~~l~rv~~~GG~V~~p~~~~p~~-G~~a~~~Dp~Gn~~~l~s~ 125 (127)
T COG3324 79 VDDIDATLERVVAAGGKVLRPKTEFPGG-GRIAHFVDPEGNRFGLWSP 125 (127)
T ss_pred cCChHHHHHHHHhcCCeEEecccccCCc-eEEEEEECCCCCEEEEeec
Confidence 9999999999999999999988766653 4999999999999999864
No 81
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.33 E-value=3.7e-11 Score=84.70 Aligned_cols=119 Identities=20% Similarity=0.310 Sum_probs=80.7
Q ss_pred eeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEE--EeCCcEEEEeecCCCCCCC-CCCCCCCCCccE--EEEe
Q 029385 14 LNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWL--FNYGMGIHLLKSEEPDNLP-KAGKNINPKDNH--ISFQ 88 (194)
Q Consensus 14 i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~--~~~g~~~~l~~~~~~~~~~-~~~~~~~~g~~h--iaf~ 88 (194)
+-|+++.|+|++++.+||.++||++.-+..+ .|+ --+|.++..-....+++.. +.-.....-..| +.+.
T Consensus 5 ~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd------~wvdfDfyGHQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfGvVl~ 78 (138)
T COG3565 5 PFHLAIPVNDLDETRRFYGEVLGCKEGRSTD------TWVDFDFYGHQVVAHLTPQPDSQGSGKVDGHGVPPPHFGVVLP 78 (138)
T ss_pred ceEEeeeccccHHHHhhhhhhcccccccccc------eEEEeeecccEEEEEecCCcccccCcccCCCCCCCccceEEEE
Confidence 4699999999999999999999999777653 444 2244443333222222211 111122222334 4556
Q ss_pred eCCHHHHHHHHHhCCCeEEccceec-Cc--cceEEEEEeCCCCCEEEEEecCC
Q 029385 89 CENMAIVERRLKEMKIDYVKSRVEE-GG--INVDQLFFHDPDGSMIEICNCDV 138 (194)
Q Consensus 89 v~dl~~~~~~l~~~Gi~~~~~~~~~-~g--~~~~~~~~~DPDG~~iEi~~~~~ 138 (194)
++|.-++.++|+++|+....++..+ .| ..++.+|+.||.||.+|+-..+.
T Consensus 79 ~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~fR~ 131 (138)
T COG3565 79 VEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGFRD 131 (138)
T ss_pred HHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeecccc
Confidence 6799999999999999988776532 11 24699999999999999987764
No 82
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=99.26 E-value=8.1e-11 Score=84.19 Aligned_cols=119 Identities=20% Similarity=0.217 Sum_probs=83.7
Q ss_pred eeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCCcEEEEeecCCCCCCCCCC--CCCCCCccEEEEeeC--
Q 029385 15 NHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMGIHLLKSEEPDNLPKAG--KNINPKDNHISFQCE-- 90 (194)
Q Consensus 15 ~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~--~~~~~g~~hiaf~v~-- 90 (194)
..|+|+|+|++++.+||+. |||+.-...... .....+....+...|++...-.+..... ....+.-.-||+.+.
T Consensus 5 IFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde-~a~~mi~~~ni~vMLL~~~~fq~F~~~~i~dt~~s~evli~ls~~s~ 82 (133)
T COG3607 5 IFVNLPVKDLEASKAFYTA-LGFKFNPQFSDE-DAACMIISDNIFVMLLEEARFQTFTKRQIADTTKSREVLISLSAGSR 82 (133)
T ss_pred EEEecchhhHHHHHHHHHH-hCcccCCCcccc-cceeEEEeccEEEEEeccHHhhhhcccccccccCCceEEEEeccCcH
Confidence 4799999999999999986 999987765422 1233444555666666544322221111 123344556788877
Q ss_pred -CHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEecC
Q 029385 91 -NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 137 (194)
Q Consensus 91 -dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~ 137 (194)
+++++.+++.+.|.+...++...+.+ +..-|.||||+.||+..+.
T Consensus 83 eevd~~v~ka~eaGGk~~~~~~d~gfM--Yg~~fqDpDGh~wE~l~m~ 128 (133)
T COG3607 83 EEVDELVDKALEAGGKPANEPQDEGFM--YGRSFQDPDGHVWEFLWMD 128 (133)
T ss_pred HHHHHHHHHHHHcCCCCCCCccccccc--cceeeeCCCCCeEEEEEeC
Confidence 78999999999999987776555544 6778999999999999875
No 83
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=99.18 E-value=1.2e-10 Score=82.86 Aligned_cols=121 Identities=23% Similarity=0.311 Sum_probs=74.4
Q ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcce--EEE-EeCCc--EEEEeecC------CCCCCCCCCCCCC-
Q 029385 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDG--AWL-FNYGM--GIHLLKSE------EPDNLPKAGKNIN- 79 (194)
Q Consensus 12 ~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~--~~~-~~~g~--~~~l~~~~------~~~~~~~~~~~~~- 79 (194)
++++||.|.|+|++++.+||+++|||+...+........ ... ..... ........ .............
T Consensus 1 ~~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (138)
T COG0346 1 MGIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPG 80 (138)
T ss_pred CceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecC
Confidence 468899999999999999999999999998865322211 111 11110 00110000 0000000000111
Q ss_pred --CCccEEEEeeCC---HHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEe
Q 029385 80 --PKDNHISFQCEN---MAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 135 (194)
Q Consensus 80 --~g~~hiaf~v~d---l~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~ 135 (194)
.+..|++|.+++ .......+...|..+..... .. .+ ..+||+||||+.|||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~-~~-~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 81 GDLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP-GR-GG-VHVYFRDPDGILIELAT 138 (138)
T ss_pred chhccCceeEecccccccceEEEeeCCCCCEEEeecC-CC-cc-eEEEEECCCCcEEEeeC
Confidence 357899999997 66777777778888765432 11 11 38999999999999973
No 84
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.17 E-value=2.9e-10 Score=89.03 Aligned_cols=127 Identities=17% Similarity=0.223 Sum_probs=82.8
Q ss_pred cceeeeEEEEcC--CHHHHHHHHHHccCCeEeeeCCCCC-cce---EEEEeC--CcEEEEeecCCCCCCC--C--CCCCC
Q 029385 11 LKSLNHISLVCR--SVEASLDFYQNVLGFFPIRRPGSFD-FDG---AWLFNY--GMGIHLLKSEEPDNLP--K--AGKNI 78 (194)
Q Consensus 11 i~~i~hv~l~v~--Dle~s~~FY~~vLG~~~~~~~~~~~-~~~---~~~~~~--g~~~~l~~~~~~~~~~--~--~~~~~ 78 (194)
+++|+||++.|+ |++++++||+++|||+...+....+ ..+ ..+... +..+.|.+...+.... . .....
T Consensus 1 ~~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~~~~~s~~~~fl~~~~ 80 (191)
T cd07250 1 LTRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPASGKRKSQIQEFLEYYG 80 (191)
T ss_pred CceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCCCCCccHHHHHHHHhC
Confidence 468999999999 9999999999999999877653211 111 222222 2445565544321100 0 00123
Q ss_pred CCCccEEEEeeCCHHHHHHHHHhCCCeEEccceecC-------c-----------cceEEEEEeCCCCCEEEEEecC
Q 029385 79 NPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEG-------G-----------INVDQLFFHDPDGSMIEICNCD 137 (194)
Q Consensus 79 ~~g~~hiaf~v~dl~~~~~~l~~~Gi~~~~~~~~~~-------g-----------~~~~~~~~~DPDG~~iEi~~~~ 137 (194)
++|..||||.|+|+++++++|+++|+++...+.... + .....++-+|..|.++.|++.+
T Consensus 81 G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P~~yy~~l~~r~~~~~~~~~~~~l~~~~il~d~~~~~~llq~ft~~ 157 (191)
T cd07250 81 GAGVQHIALATDDIFATVAALRARGVEFLPIPDNYYDDLEARLDGILVDEDLDTLRELGILVDRDDGGYLLQIFTKP 157 (191)
T ss_pred CCceeEEEEECCCHHHHHHHHHHcCCeeccCchhhHHHHHHhccccccchhHHHHHHCCEEEECCCCCEEEEEeccC
Confidence 578999999999999999999999999887652110 0 0112455566777777777653
No 85
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.12 E-value=1e-09 Score=93.54 Aligned_cols=131 Identities=16% Similarity=0.259 Sum_probs=87.5
Q ss_pred CCcccceeeeEEEEcC--CHHHHHHHHHHccCCeEeeeCCC-CCcce--EE-EEe--CCcEEEEeecCCCCCCCC-C---
Q 029385 7 NPLCLKSLNHISLVCR--SVEASLDFYQNVLGFFPIRRPGS-FDFDG--AW-LFN--YGMGIHLLKSEEPDNLPK-A--- 74 (194)
Q Consensus 7 ~~~~i~~i~hv~l~v~--Dle~s~~FY~~vLG~~~~~~~~~-~~~~~--~~-~~~--~g~~~~l~~~~~~~~~~~-~--- 74 (194)
..+.+++|+||++.|+ |+++++.||+++|||+...+..- ..+.+ .+ +.. ....++|.+......... .
T Consensus 152 ~~~~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~~g~~~i~L~ep~~~~~~s~i~~fl 231 (353)
T TIGR01263 152 PGVGLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASPDGKVKIPLNEPASGKDKSQIEEFL 231 (353)
T ss_pred CCCCeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECCCCcEEEEEeccCCCCCCCHHHHHH
Confidence 3467999999999999 99999999999999988765431 11111 12 222 224566665322111000 0
Q ss_pred CCCCCCCccEEEEeeCCHHHHHHHHHhCCCeEEccceec--------C---c------cceEEEEEeCCCCCEEEEEecC
Q 029385 75 GKNINPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEE--------G---G------INVDQLFFHDPDGSMIEICNCD 137 (194)
Q Consensus 75 ~~~~~~g~~hiaf~v~dl~~~~~~l~~~Gi~~~~~~~~~--------~---g------~~~~~~~~~DPDG~~iEi~~~~ 137 (194)
....++|..||||.|+|+++.+++|+++|+++...+... + + .....++-.|.+|.++.|++.+
T Consensus 232 ~~~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P~~yY~~l~~r~~~~~~~~~~~l~~~~iL~D~d~~g~llqift~~ 311 (353)
T TIGR01263 232 EFYNGAGVQHIALNTDDIVRTVRALRARGVEFLDTPDTYYDLLGERLGGHVKEDLDTLRELNILIDGDEDGYLLQIFTKP 311 (353)
T ss_pred HHcCCCCccEEEEEcCCHHHHHHHHHHcCCccCcCCHHHHHHHHHHhcccccchHHHHHHCCEEEecCCCceEEEEeccC
Confidence 112357999999999999999999999999988755210 0 0 0112456678889888888764
No 86
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.05 E-value=6.8e-09 Score=88.52 Aligned_cols=100 Identities=10% Similarity=0.162 Sum_probs=70.2
Q ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeC-CcEEEEeecCCCCCCCC-CCCCCCCCccEEEEee
Q 029385 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNY-GMGIHLLKSEEPDNLPK-AGKNINPKDNHISFQC 89 (194)
Q Consensus 12 ~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~-g~~~~l~~~~~~~~~~~-~~~~~~~g~~hiaf~v 89 (194)
.+++||.|.|+|++++.+||.+.|||+...+.........+.+.. +..+.|.....+.+... .....+++..|++|.|
T Consensus 1 ~~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~~~~~~~~G~~~l~L~~~~~~~s~~~~~~~~hg~gv~~iaf~V 80 (353)
T TIGR01263 1 DGFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHREKASHVLRQGQINFVLTAPYSSDSPAADFAAKHGDGVKDVAFRV 80 (353)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCceeEEEEEeCCEEEEEecCCCCCchHHHHHHhCCCceEEEEEEE
Confidence 368999999999999999999999999887621111112333343 45566665433221110 0013467899999999
Q ss_pred CCHHHHHHHHHhCCCeEEccce
Q 029385 90 ENMAIVERRLKEMKIDYVKSRV 111 (194)
Q Consensus 90 ~dl~~~~~~l~~~Gi~~~~~~~ 111 (194)
+|++++++++.++|+.+..++.
T Consensus 81 ~Dv~~a~~~l~~~Ga~~v~~p~ 102 (353)
T TIGR01263 81 DDAAAAFEAAVERGAEPVQAPV 102 (353)
T ss_pred CCHHHHHHHHHHCCCEeccCCc
Confidence 9999999999999999887654
No 87
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.01 E-value=1.7e-08 Score=73.69 Aligned_cols=110 Identities=17% Similarity=0.029 Sum_probs=71.3
Q ss_pred EEEEc-CCHHHHHHHHHHccCCeEeeeCCCCC--------cce----EEEEeCCcEEEEeecCCCCCCCCCCCCCCCCcc
Q 029385 17 ISLVC-RSVEASLDFYQNVLGFFPIRRPGSFD--------FDG----AWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDN 83 (194)
Q Consensus 17 v~l~v-~Dle~s~~FY~~vLG~~~~~~~~~~~--------~~~----~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~ 83 (194)
..|.+ .|.+++++||+++||+++.......+ ..+ +-+...+..+.+..... ... .......
T Consensus 3 p~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~~l~~~d~~~-~~~-----~~~~~~~ 76 (128)
T cd06588 3 PYLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQRLMASDGGP-GFP-----FTFGNGI 76 (128)
T ss_pred eEEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCEEEEEEcCCC-CCC-----CCCCCCE
Confidence 45677 89999999999999999887642110 011 11222343444443321 111 1123456
Q ss_pred EEEEeeCC---HHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEE
Q 029385 84 HISFQCEN---MAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEIC 134 (194)
Q Consensus 84 hiaf~v~d---l~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~ 134 (194)
++++.|+| +++++++|.+.| ++..++.. ..++.+..+++||+|+.|+|.
T Consensus 77 ~l~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~-~~~g~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 77 SLSVECDSEEEADRLFEALSEGG-TVLMPLQK-TFWSPLFGWVTDRFGVSWQIN 128 (128)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC-eEeccchh-cCcccccEEEECCCCCEEEeC
Confidence 89999985 778889988877 66655533 345668999999999999973
No 88
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.88 E-value=1e-08 Score=85.96 Aligned_cols=103 Identities=15% Similarity=0.194 Sum_probs=69.3
Q ss_pred eeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEEEEeeC---C
Q 029385 15 NHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCE---N 91 (194)
Q Consensus 15 ~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~---d 91 (194)
.||+|+|+|+++|.+||+++||+.. ...+ ..... +..+..+....+. .....-.-+|+.++ +
T Consensus 249 IfVNLpV~DL~rS~~FYt~LF~~n~-Fsde-----~a~cm--~dtI~vMllt~~D-------~~~~~evLl~Ls~~Sre~ 313 (357)
T PRK01037 249 FSVVLEVQDLRRAKKFYSKMFGLEC-WDGD-----KLFLL--GKTSLYLQQTKAE-------KKNRGTTTLSLELECEHD 313 (357)
T ss_pred EEEEeeeCCHHHHHHHHHHHhCCCC-CCCC-----ccccc--cCcEEEEEecCCC-------CCCcceEEEEeccCCHHH
Confidence 4999999999999999999999885 3322 22222 3233333222221 12234456888888 6
Q ss_pred HHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEec
Q 029385 92 MAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 136 (194)
Q Consensus 92 l~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~ 136 (194)
++++.+++.++|.....++ ...|. .--|.||||+.||++..
T Consensus 314 VD~lv~~A~aaGG~~~~~~-~D~Gf---~rsf~D~DGH~WEi~~~ 354 (357)
T PRK01037 314 FVRFLRRWEMLGGELGEQA-DGHFP---LRLVFDLDGHIWVVSCV 354 (357)
T ss_pred HHHHHHHHHHcCCCCCCCc-ccccC---cceeECCCCCEEEEEEE
Confidence 8888999999998655443 33333 56799999999999864
No 89
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.74 E-value=8.3e-08 Score=82.67 Aligned_cols=129 Identities=13% Similarity=0.183 Sum_probs=86.7
Q ss_pred cccceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCC----cc---eEEEEeCC--cEEEEeecCCC---CCCCC--C
Q 029385 9 LCLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFD----FD---GAWLFNYG--MGIHLLKSEEP---DNLPK--A 74 (194)
Q Consensus 9 ~~i~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~----~~---~~~~~~~g--~~~~l~~~~~~---~~~~~--~ 74 (194)
..+++|+||++.|.+++.++.||+++|||+........+ .. ...+.... ..+.|.+.... .+... -
T Consensus 176 ~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~g~v~ipLnEP~~~~~~~SqI~eFL 255 (398)
T PLN02875 176 YGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNNEMVLLPLNEPTFGTKRKSQIQTYL 255 (398)
T ss_pred CCcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCCCcEEEEeccCCCCCCCcChHHHHH
Confidence 458899999999999999999999999998876443111 11 12222222 45666665421 11100 0
Q ss_pred CCCCCCCccEEEEeeCCHHHHHHHHHhC----CCeEEccc-e-------ec-C----c------cceEEEEEeCCCCCEE
Q 029385 75 GKNINPKDNHISFQCENMAIVERRLKEM----KIDYVKSR-V-------EE-G----G------INVDQLFFHDPDGSMI 131 (194)
Q Consensus 75 ~~~~~~g~~hiaf~v~dl~~~~~~l~~~----Gi~~~~~~-~-------~~-~----g------~~~~~~~~~DPDG~~i 131 (194)
....++|+.||||.|+||.+..++|+++ |+++...| . .+ + . .....++-.|.+|.++
T Consensus 256 ~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~Pp~~YYd~L~~R~~~~l~~e~~~~L~~~~ILvD~d~~G~LL 335 (398)
T PLN02875 256 EHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPPPPTYYKNLKKRVGDVLTEEQIKECEELGILVDKDDQGVLL 335 (398)
T ss_pred HhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCChHHHHHHHHHHhccCCChhhHHHHHHcCEEEecCCCceEE
Confidence 1244589999999999999999999998 99988744 1 10 0 0 0123556677889999
Q ss_pred EEEecC
Q 029385 132 EICNCD 137 (194)
Q Consensus 132 Ei~~~~ 137 (194)
.|++.+
T Consensus 336 QIFTkp 341 (398)
T PLN02875 336 QIFTKP 341 (398)
T ss_pred EEeccc
Confidence 998864
No 90
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=98.72 E-value=1.6e-07 Score=74.53 Aligned_cols=113 Identities=19% Similarity=0.334 Sum_probs=76.6
Q ss_pred eeeeEEEEcCCHHHHHHHHHHccCCeEeeeCC---------CCCcceEE---EEeCC--cEEEEeecCCCCCCCCCCCCC
Q 029385 13 SLNHISLVCRSVEASLDFYQNVLGFFPIRRPG---------SFDFDGAW---LFNYG--MGIHLLKSEEPDNLPKAGKNI 78 (194)
Q Consensus 13 ~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~---------~~~~~~~~---~~~~g--~~~~l~~~~~~~~~~~~~~~~ 78 (194)
+.-|+.+.|-|..++++||+++|||++.+..+ +.++++.| +.++| ....+++......... -..
T Consensus 17 r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~~--Yel 94 (299)
T KOG2943|consen 17 RALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVSK--YEL 94 (299)
T ss_pred heeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCccc--eec
Confidence 45699999999999999999999999987543 23345555 34555 2333333332222221 156
Q ss_pred CCCccEEEEeeCCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEec
Q 029385 79 NPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 136 (194)
Q Consensus 79 ~~g~~hiaf~v~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~ 136 (194)
+.+..||.+.++|+-...+.+..-|- . +.+.-.+++.||||+.++|.+.
T Consensus 95 Gndfg~i~I~s~dv~~~ve~v~~p~~---~------~~g~~~~~v~dPdGykF~l~~~ 143 (299)
T KOG2943|consen 95 GNDFGGITIASDDVFSKVEKVNAPGG---K------GSGCGIAFVKDPDGYKFYLIDR 143 (299)
T ss_pred cCCcccEEEeHHHHHHHHHHhcCcCC---c------ccceEEEEEECCCCcEEEEecc
Confidence 67888999999887776666554432 1 1123577999999999999973
No 91
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=98.65 E-value=2.6e-07 Score=74.72 Aligned_cols=100 Identities=16% Similarity=0.189 Sum_probs=69.1
Q ss_pred ccceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEEEEee
Q 029385 10 CLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQC 89 (194)
Q Consensus 10 ~i~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v 89 (194)
.-+.|+||+|.|.|++++.+||+++|||+...+.+ ...|+...+...|+....+...-.........|+..+.+.+
T Consensus 165 ~~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~~~----~A~F~a~G~YHHHia~N~W~s~~~~~~~~~~~GLa~~~i~~ 240 (265)
T COG2514 165 AGTIIGHVHLKVADLEEAEQFYEDVLGLEVTARGP----SALFLASGDYHHHLAANTWNSRGARPRNANASGLAWLEIHT 240 (265)
T ss_pred CCcEEeEEEEEeCCHHHHHHHHHHhcCCeeeecCC----cceEEecCCcceeEEEeccccCCCCCCCCCCCCcceEEEEc
Confidence 45789999999999999999999999999999842 33454444555666655554433332235678889999998
Q ss_pred CCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEE
Q 029385 90 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEIC 134 (194)
Q Consensus 90 ~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~ 134 (194)
++-........ ...||.|+.|.+.
T Consensus 241 ~~~~~l~~~~~---------------------~~~Dp~G~~i~~~ 264 (265)
T COG2514 241 PDPEKLDATGT---------------------RLTDPWGIVIRVV 264 (265)
T ss_pred CCccccccccc---------------------ceecCCCceEEEe
Confidence 86433221111 1189999998874
No 92
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.64 E-value=2.2e-06 Score=63.34 Aligned_cols=117 Identities=17% Similarity=0.121 Sum_probs=76.2
Q ss_pred EEEEcC-CHHHHHHHHHHccCCeEeeeCCCCCc--------ceEEE---EeCCcEEEEeecCCCCCCCCCCCCCCCCccE
Q 029385 17 ISLVCR-SVEASLDFYQNVLGFFPIRRPGSFDF--------DGAWL---FNYGMGIHLLKSEEPDNLPKAGKNINPKDNH 84 (194)
Q Consensus 17 v~l~v~-Dle~s~~FY~~vLG~~~~~~~~~~~~--------~~~~~---~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~h 84 (194)
..|..+ |.+++++||+++||++...+....+- .+..+ +..+...-++....+...+. ..+..-..
T Consensus 4 PYl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g~~im~sd~~~~~~~~---~~~~~s~~ 80 (136)
T COG2764 4 PYLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGGSTIMLSDAFPDMGAT---EGGGTSLS 80 (136)
T ss_pred eEEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECCEEEEEecCCCccCcc---cCCCeeEE
Confidence 457778 99999999999999998887543321 01111 12221222222222211110 11223345
Q ss_pred EEEeeCCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEecC
Q 029385 85 ISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 137 (194)
Q Consensus 85 iaf~v~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~ 137 (194)
|-+.++|++++++++.+.|+++..+.. ..-|+.+...+.||.|+.|-|....
T Consensus 81 l~~~~~d~da~f~~a~~aGa~v~mpl~-~~fwG~r~G~v~D~fGv~W~l~~~~ 132 (136)
T COG2764 81 LDLYVEDVDAVFERAAAAGATVVMPLE-DTFWGDRYGQVTDPFGVVWMLNTPV 132 (136)
T ss_pred EEEEehHHHHHHHHHHhcCCeEEecch-hcCcccceEEEECCCCCEEEEecCc
Confidence 667777999999999999988887663 3345669999999999999998653
No 93
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=98.58 E-value=3.1e-07 Score=72.94 Aligned_cols=115 Identities=15% Similarity=0.245 Sum_probs=76.6
Q ss_pred eeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCC---cEEEEeecCCCCCCCCCCCCCCCCccEEEEee
Q 029385 13 SLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYG---MGIHLLKSEEPDNLPKAGKNINPKDNHISFQC 89 (194)
Q Consensus 13 ~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g---~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v 89 (194)
.+.+|.|.|.|++++++||.++|||++.+.... ....+++++ ..++|......- ....+...++|.+
T Consensus 149 pv~~V~l~VgdL~ks~kyw~~~lgM~ilekeek---~t~~~mgYgd~q~~LElt~~~~~i-------d~~kg~griafai 218 (299)
T KOG2943|consen 149 PVLQVMLNVGDLQKSIKYWEKLLGMKILEKEEK---YTRARMGYGDEQCVLELTYNYDVI-------DRAKGFGRIAFAI 218 (299)
T ss_pred CeEEEEEEehhHHHHHHHHHHHhCcchhhhhhh---hhhhhhccCCcceEEEEEeccCcc-------cccccceeEEEec
Confidence 456899999999999999999999998884321 122234444 335555443322 2234556677766
Q ss_pred C--CHHHHHHHHHhCCCeEEccceec---CccceEEEEEeCCCCCEEEEEecC
Q 029385 90 E--NMAIVERRLKEMKIDYVKSRVEE---GGINVDQLFFHDPDGSMIEICNCD 137 (194)
Q Consensus 90 ~--dl~~~~~~l~~~Gi~~~~~~~~~---~g~~~~~~~~~DPDG~~iEi~~~~ 137 (194)
+ ++..+.+.++..+-.+..+.... ++.....+.+.||||+.|-++...
T Consensus 219 p~d~~~~l~e~iK~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVdde 271 (299)
T KOG2943|consen 219 PTDDLPKLQEAIKSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVDDE 271 (299)
T ss_pred cccccccHHHHHHHhccccccceeeccCCCcceeEEEEEECCCCceEEEeccH
Confidence 6 77777777777765555444322 234578999999999999888643
No 94
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.45 E-value=1e-05 Score=57.92 Aligned_cols=114 Identities=22% Similarity=0.169 Sum_probs=63.3
Q ss_pred eEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEEEEeeCCHHHH
Q 029385 16 HISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCENMAIV 95 (194)
Q Consensus 16 hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~dl~~~ 95 (194)
+-.|.|+|-+...+||+++|||++..+.. ..+++ +.......+..+..++...+.-.....++++.+.|++-.++
T Consensus 3 ~PvlRVnnR~~ni~FY~~~LGfkll~EEn----a~a~l-g~~~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~~~EI 77 (125)
T PF14506_consen 3 IPVLRVNNRDLNIDFYQKTLGFKLLSEEN----ALAIL-GDQQKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPNPKEI 77 (125)
T ss_dssp EEEEEESSHHHHHHHHTTTT--EEEEEET----TEEEE-E-TT--EEEEEEE--TTT-B--SSS-SEEEEEEEESSHHHH
T ss_pred CceEEEcCHHHhHHHHHhccCcEEeeccc----cEEEe-cCCCCceEEEEecCCccccccccCcceeeEEEEEcCCHHHH
Confidence 67899999999999999999999999874 34444 33333333333222232221114456889999999987776
Q ss_pred HHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEecCC
Q 029385 96 ERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDV 138 (194)
Q Consensus 96 ~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~~ 138 (194)
.+.|... ..+... .. |...+.|-..+|+|..+.|...++
T Consensus 78 e~LLar~-~~~~~l--~k-g~~gyAfe~vSPEgd~~llhaEdd 116 (125)
T PF14506_consen 78 EALLARG-AQYDRL--YK-GKNGYAFEAVSPEGDRFLLHAEDD 116 (125)
T ss_dssp HHHHHC--S--SEE--EE--SSSEEEEEE-TT--EEEEE--S-
T ss_pred HHHHhcc-ccccee--EE-cCCceEEEEECCCCCEEEEEEcCC
Confidence 6655433 332221 11 122278888899999999997653
No 95
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.44 E-value=6.1e-07 Score=66.56 Aligned_cols=123 Identities=21% Similarity=0.364 Sum_probs=80.4
Q ss_pred CCCcccceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCC-cEEEEeecCCCCCCCC-CCCCCCCCcc
Q 029385 6 ENPLCLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYG-MGIHLLKSEEPDNLPK-AGKNINPKDN 83 (194)
Q Consensus 6 ~~~~~i~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g-~~~~l~~~~~~~~~~~-~~~~~~~g~~ 83 (194)
.+|+.+.++.+|.+.|.+.++...+++ .|||+.+.+..+ ....++..| +.+.|-. .+.+... .....+++..
T Consensus 2 ~nP~g~~G~dFvEFa~~~~~~l~~~~~-~lGF~~~a~hrs---k~v~l~rQG~I~~vln~--ep~s~a~~~~~~HG~sv~ 75 (139)
T PF14696_consen 2 DNPLGLDGFDFVEFAVPDAQALAQLFT-ALGFQPVARHRS---KDVTLYRQGDINFVLNS--EPDSFAAEFAAQHGPSVC 75 (139)
T ss_dssp --TT-EEEEEEEEEE-SSTTSCHHHHC-CCCEEEECCECC---CSEEEEEETTEEEEEEE--ESTSCHHHHHHHHSSEEE
T ss_pred CCCCCCCCeEEEEEecCCHHHHHHHHH-HhCcceEEecCC---cceEEEEeCCEEEEEeC--CCcchHHHHHHhcCCEEE
Confidence 368999999999999999888888885 599999887543 234555555 3444433 2222110 0024467899
Q ss_pred EEEEeeCCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEec
Q 029385 84 HISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 136 (194)
Q Consensus 84 hiaf~v~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~ 136 (194)
-|+|.|+|..++++++.+.|.+....+..... ...--++-+.|.++.+++.
T Consensus 76 aiafrV~Da~~A~~rA~~~GA~~~~~~~~~~e--~~~paI~g~G~sl~yfVdr 126 (139)
T PF14696_consen 76 AIAFRVDDAAAAYERAVALGAEPVQEPTGPGE--LNIPAIRGIGGSLHYFVDR 126 (139)
T ss_dssp EEEEEES-HHHHHHHHHHTT--EEEEEEETT---BEEEEEE-CCC-EEEEEE-
T ss_pred EEEEEeCCHHHHHHHHHHcCCcCcccCCCCCc--EeeeeEEccCCCEEEEEec
Confidence 99999999999999999999998876643332 2556778889999988875
No 96
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=98.36 E-value=1.1e-06 Score=72.36 Aligned_cols=104 Identities=15% Similarity=0.197 Sum_probs=70.3
Q ss_pred cccceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEE---EEeCC-cEEEEeecCCCCCCC-C-CCCCCCCCc
Q 029385 9 LCLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAW---LFNYG-MGIHLLKSEEPDNLP-K-AGKNINPKD 82 (194)
Q Consensus 9 ~~i~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~---~~~~g-~~~~l~~~~~~~~~~-~-~~~~~~~g~ 82 (194)
-++.+++||.+.|.|...++.||+..|||++..-.+-......| .+..| +...+.....+.... + .-...+.+.
T Consensus 13 g~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g~~vFv~~s~~~p~~~~~G~~l~~Hgdgv 92 (381)
T KOG0638|consen 13 GKFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQGKIVFVFNSAYNPDNSEYGDHLVKHGDGV 92 (381)
T ss_pred cceeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcCCEEEEEecCCCCCchhhhhhhhhcccch
Confidence 46889999999999999999999999999987743211011111 23333 333333333332211 1 001344567
Q ss_pred cEEEEeeCCHHHHHHHHHhCCCeEEcccee
Q 029385 83 NHISFQCENMAIVERRLKEMKIDYVKSRVE 112 (194)
Q Consensus 83 ~hiaf~v~dl~~~~~~l~~~Gi~~~~~~~~ 112 (194)
.-+||.|+|++++.+.+.++|+.+..++.+
T Consensus 93 kdvafeVeD~da~~~~~va~Ga~v~~~p~~ 122 (381)
T KOG0638|consen 93 KDVAFEVEDADAIFQEAVANGAKVVRPPWE 122 (381)
T ss_pred hceEEEecchHHHHHHHHHcCCcccCCcce
Confidence 789999999999999999999999988643
No 97
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=98.29 E-value=3.1e-06 Score=65.07 Aligned_cols=122 Identities=17% Similarity=0.275 Sum_probs=64.4
Q ss_pred eeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCc---ceEEEEeCCcEEEEeecCCCCCCCCCCC-------CCCCCcc
Q 029385 14 LNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDF---DGAWLFNYGMGIHLLKSEEPDNLPKAGK-------NINPKDN 83 (194)
Q Consensus 14 i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~---~~~~~~~~g~~~~l~~~~~~~~~~~~~~-------~~~~g~~ 83 (194)
|+|+.+.|+|++++.++|++.|||.+.....+..+ +..+.+..+ .++++........+.... ....|..
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~~-YlEli~i~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGDG-YLELIAIDPEAPAPDRGRWFGLDRLAGGEGLY 79 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SSS-EEEEEEES-HHHSTGGGT-TTTHHHHT--EEE
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCCc-eEEEEEeCCcccccccccceechhhcCCCCeE
Confidence 68999999999999999988899999887655431 223345555 899988543222211110 1367888
Q ss_pred EEEEeeCCHHHHHHHHHhCCCeEEccceecCc-cceEEEEEeCC----CCCEEEEEec
Q 029385 84 HISFQCENMAIVERRLKEMKIDYVKSRVEEGG-INVDQLFFHDP----DGSMIEICNC 136 (194)
Q Consensus 84 hiaf~v~dl~~~~~~l~~~Gi~~~~~~~~~~g-~~~~~~~~~DP----DG~~iEi~~~ 136 (194)
.+||.++|+++..+++++.|+.........++ ...+.+++.++ .+..-++++.
T Consensus 80 ~~~l~t~d~~~~~~~l~~~G~~~~~r~~~dG~~~~w~~~~~~~~~~p~~~~~Pf~i~~ 137 (175)
T PF13468_consen 80 GWALRTDDIEAVAARLRAAGLDAGSRVRPDGGDLRWRLAFPEDGALPFGGLLPFFIQW 137 (175)
T ss_dssp EEEEE-S-HHHHHHHHHTTT-EEEEEEEEEE-EEEEEEEEEE-SS---SS---EEEEE
T ss_pred EEEEecCCHHHHHHHHHhcCCCCCCcCcCCCCcceEEEEEeCCcccccCCCCcEEEEe
Confidence 99999999999999999999863222211111 22355666664 2456666643
No 98
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.17 E-value=5.2e-05 Score=65.52 Aligned_cols=123 Identities=11% Similarity=0.086 Sum_probs=79.5
Q ss_pred eeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCc---ceEEEEeCC-cEEEEeecCCCC--C----------CCC--CC
Q 029385 14 LNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDF---DGAWLFNYG-MGIHLLKSEEPD--N----------LPK--AG 75 (194)
Q Consensus 14 i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~---~~~~~~~~g-~~~~l~~~~~~~--~----------~~~--~~ 75 (194)
++||.+.|.|..++..||+..|||+.+...+.... ...+++..| +.+.+.....+. . .+. ..
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g~i~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSGDLVFLFTAPYSPKIGAGDDDPASTAPHPSFSSD 80 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeCCEEEEEeCCCCCccccccccccccccccccCcH
Confidence 58999999999999999999999999886642111 124445555 333333332120 0 000 00
Q ss_pred ------CCCCCCccEEEEeeCCHHHHHHHHHhCCCeEEccceecC----ccceEEEEEeCCCCCEEEEEec
Q 029385 76 ------KNINPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEG----GINVDQLFFHDPDGSMIEICNC 136 (194)
Q Consensus 76 ------~~~~~g~~hiaf~v~dl~~~~~~l~~~Gi~~~~~~~~~~----g~~~~~~~~~DPDG~~iEi~~~ 136 (194)
...+++..-|+|+|+|++++++++.++|.....++.... +......-+.-++|..+-+++.
T Consensus 81 ~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr 151 (398)
T PLN02875 81 AARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSY 151 (398)
T ss_pred HHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEcc
Confidence 134578889999999999999999999999877654321 1112333455667777777664
No 99
>PRK10148 hypothetical protein; Provisional
Probab=98.08 E-value=0.00036 Score=52.32 Aligned_cols=117 Identities=13% Similarity=-0.002 Sum_probs=68.8
Q ss_pred eEEEEcC-CHHHHHHHHHHccCCeEeeeCCCCC------------------cceEEE---EeCCcEEEEeecCCCCCCCC
Q 029385 16 HISLVCR-SVEASLDFYQNVLGFFPIRRPGSFD------------------FDGAWL---FNYGMGIHLLKSEEPDNLPK 73 (194)
Q Consensus 16 hv~l~v~-Dle~s~~FY~~vLG~~~~~~~~~~~------------------~~~~~~---~~~g~~~~l~~~~~~~~~~~ 73 (194)
...|... +.+++.+||+++||.++.......+ .++..+ +..+ +..++........
T Consensus 4 ~pyL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~-g~~lm~sD~~~~~-- 80 (147)
T PRK10148 4 SPYLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIA-GSDIMMSDAIPSG-- 80 (147)
T ss_pred EEEEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEEC-CEEEEEECCCCCc--
Confidence 3456665 8999999999999998765421000 011111 1122 1222222211111
Q ss_pred CCCCCCCCccEEEEeeCCHHH---HHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEecCCCC
Q 029385 74 AGKNINPKDNHISFQCENMAI---VERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLP 140 (194)
Q Consensus 74 ~~~~~~~g~~hiaf~v~dl~~---~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~~~p 140 (194)
.......++++.++|.++ ++++|. .|.++..+..+ ..++.+...+.||-|+.|-|......|
T Consensus 81 ---~~~~~~~~l~l~~~d~ee~~~~~~aLa-~gg~v~mpl~~-~~wg~~~g~v~D~fGi~W~l~~~~~~~ 145 (147)
T PRK10148 81 ---KAHYSGFTLVLDTQDVEEGKRWFDNLA-ANGKIEMAWQE-TFWAHGFGKVTDKFGVPWMINVVKQQP 145 (147)
T ss_pred ---CCCCCeEEEEEECCCHHHHHHHHHHhh-CCCEEEecchh-cchhhccEEEECCCCCEEEEEecCCCC
Confidence 111135678888888776 566664 66676665533 335558889999999999998765444
No 100
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=97.96 E-value=1e-05 Score=67.81 Aligned_cols=104 Identities=15% Similarity=0.267 Sum_probs=70.4
Q ss_pred CCcccceeeeEEEEcC--CHHHHHHHHHHccCCeEeeeCCC-CCcceE---EEEe-CC-cEEEEeecCCCCCCCCC--CC
Q 029385 7 NPLCLKSLNHISLVCR--SVEASLDFYQNVLGFFPIRRPGS-FDFDGA---WLFN-YG-MGIHLLKSEEPDNLPKA--GK 76 (194)
Q Consensus 7 ~~~~i~~i~hv~l~v~--Dle~s~~FY~~vLG~~~~~~~~~-~~~~~~---~~~~-~g-~~~~l~~~~~~~~~~~~--~~ 76 (194)
....+..|+|++..|. .++.++.||+++|||+.....+- .+..+. .+.+ .| ..+-|-...+..+.... ..
T Consensus 161 ~~~g~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp~G~vrlplN~s~~~~sqi~efl~~ 240 (363)
T COG3185 161 GGVGLTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSPCGKVRLPLNESADDKSQIGEFLRE 240 (363)
T ss_pred cccCceeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecCCCcEEeecccCCCchhHHHHHHHH
Confidence 3445789999999986 99999999999999988776431 111211 1222 22 33333333332221100 02
Q ss_pred CCCCCccEEEEeeCCHHHHHHHHHhCCCeEEccc
Q 029385 77 NINPKDNHISFQCENMAIVERRLKEMKIDYVKSR 110 (194)
Q Consensus 77 ~~~~g~~hiaf~v~dl~~~~~~l~~~Gi~~~~~~ 110 (194)
..+.|+.||+|.++||-++.++|+++|+++...+
T Consensus 241 y~G~GIQHIA~~T~dI~~tv~~lr~rG~~fl~ip 274 (363)
T COG3185 241 YRGEGIQHIAFGTDDIYATVAALRERGVKFLPIP 274 (363)
T ss_pred hCCCcceEEEecccHHHHHHHHHHHcCCccCCCc
Confidence 5678999999999999999999999999988654
No 101
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=97.35 E-value=0.0041 Score=52.41 Aligned_cols=119 Identities=20% Similarity=0.336 Sum_probs=81.9
Q ss_pred CCCCCCcccceeeeEEEEcCCH-HHHHHHHHHccCCeEeeeCCCCCcceEEEEeCCcEEEEeecCCCCCC--CCCCCCCC
Q 029385 3 ESVENPLCLKSLNHISLVCRSV-EASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMGIHLLKSEEPDNL--PKAGKNIN 79 (194)
Q Consensus 3 ~~~~~~~~i~~i~hv~l~v~Dl-e~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~--~~~~~~~~ 79 (194)
.....|+...++.+|.+.|.|. ++...++. .|||....+.-+ ..+.++..| ++-++....+.+. ... ...+
T Consensus 12 ~~~~~P~~~~GfeFvEf~~~d~~~~l~~l~~-~lGF~~~~~Hrs---k~v~l~rQG-dinlvvn~~~~s~a~~f~-~~Hg 85 (363)
T COG3185 12 DTLANPEGTDGFEFVEFAVPDPQEALGALLG-QLGFTAVAKHRS---KAVTLYRQG-DINLVVNAEPDSFAAEFL-DKHG 85 (363)
T ss_pred ccccCCCCCCceeEEEEecCCHHHHHHHHHH-HhCccccccccc---cceeEEEeC-CEEEEEcCCCcchhhHHH-HhcC
Confidence 3445678899999999999999 66666665 599988776543 355666666 4544444433331 111 2667
Q ss_pred CCccEEEEeeCCHHHHHHHHHhCCCeEEccce---e-----cCccceEEEEEeCCC
Q 029385 80 PKDNHISFQCENMAIVERRLKEMKIDYVKSRV---E-----EGGINVDQLFFHDPD 127 (194)
Q Consensus 80 ~g~~hiaf~v~dl~~~~~~l~~~Gi~~~~~~~---~-----~~g~~~~~~~~~DPD 127 (194)
++..-++|.|+|...++++..+.|.+....+. + -.+.+...+||.|.+
T Consensus 86 ps~~a~a~~V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~ 141 (363)
T COG3185 86 PSACAMAFRVDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRY 141 (363)
T ss_pred CchheeEEeeCCHHHHHHHHHHcCCccccCCCCCccccccceeccCCcEEEEeccC
Confidence 88899999999999999999999985443321 0 012345788888887
No 102
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=96.97 E-value=0.001 Score=55.18 Aligned_cols=128 Identities=17% Similarity=0.219 Sum_probs=84.7
Q ss_pred cccceeeeEEEEcC--CHHHHHHHHHHccCCeEeeeCCCCCcc------eEEE-EeCCcEEEEeecCCCCCCCCCC----
Q 029385 9 LCLKSLNHISLVCR--SVEASLDFYQNVLGFFPIRRPGSFDFD------GAWL-FNYGMGIHLLKSEEPDNLPKAG---- 75 (194)
Q Consensus 9 ~~i~~i~hv~l~v~--Dle~s~~FY~~vLG~~~~~~~~~~~~~------~~~~-~~~g~~~~l~~~~~~~~~~~~~---- 75 (194)
+.+..++|+...++ ..+.+.+||.+.|||.-.+..+..... ..|+ .++...+.+-..+.......+.
T Consensus 174 ~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vlan~~esi~mpinEp~~G~k~ksQIqe 253 (381)
T KOG0638|consen 174 GGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLANYEESIKMPINEPAPGKKKKSQIQE 253 (381)
T ss_pred cceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHhcCCccEEEeccCCCCCCccHHHHHH
Confidence 57889999999999 788999999999999888776421111 1122 2233233332222111111111
Q ss_pred ---CCCCCCccEEEEeeCCHHHHHHHHHhCCCeEEccceec-------Cc-------------cceEEEEEeCCCCCEEE
Q 029385 76 ---KNINPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEE-------GG-------------INVDQLFFHDPDGSMIE 132 (194)
Q Consensus 76 ---~~~~~g~~hiaf~v~dl~~~~~~l~~~Gi~~~~~~~~~-------~g-------------~~~~~~~~~DPDG~~iE 132 (194)
...++|+.||++.++||-++.+.++++|.++...|... -+ .....+.-.|-.|+++.
T Consensus 254 yv~y~gG~GvQHiaL~tedIi~Ai~~lr~rG~eFLs~Ps~YYqnl~erl~~~~~~vked~~~l~el~ILvD~De~gyLLQ 333 (381)
T KOG0638|consen 254 YVEYHGGAGVQHIALNTEDIIEAIRGLRARGGEFLSPPSTYYQNLKERLSTSIRKVKEDIKLLEELGILVDFDENGYLLQ 333 (381)
T ss_pred HHHhcCCCceeeeeecchHHHHHHHHHHhcCCccccCCHHHHHhHHHHhhhhhhhhhccHHHHHHcCeEEecCCCcEEee
Confidence 24568999999999999999999999999988655210 00 01234555677899999
Q ss_pred EEec
Q 029385 133 ICNC 136 (194)
Q Consensus 133 i~~~ 136 (194)
|.+.
T Consensus 334 IFTK 337 (381)
T KOG0638|consen 334 IFTK 337 (381)
T ss_pred eecc
Confidence 9975
No 103
>PF15067 FAM124: FAM124 family
Probab=96.45 E-value=0.022 Score=45.56 Aligned_cols=103 Identities=18% Similarity=0.289 Sum_probs=64.1
Q ss_pred eeeEEEEcC--CHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeC--CcEEEEeecCCCCCCCCCCCCCCCCccEEEEee
Q 029385 14 LNHISLVCR--SVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNY--GMGIHLLKSEEPDNLPKAGKNINPKDNHISFQC 89 (194)
Q Consensus 14 i~hv~l~v~--Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~--g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v 89 (194)
+--++|.|+ |.+.+++||+-+|+-+...+..++ ..+.+.. +..+.+--..-+.... .......-+.|.|
T Consensus 129 ilRftly~~~~N~~d~vr~Yelil~~~~~~~k~~F---C~F~lys~~~~~iQlsLK~lp~~~~----p~p~esavLqF~V 201 (236)
T PF15067_consen 129 ILRFTLYCSFDNYEDMVRFYELILQREPTQQKEDF---CFFTLYSQPGLDIQLSLKQLPPGMS----PEPTESAVLQFRV 201 (236)
T ss_pred EEEEEEEecCCCHHHHHHHHHHHhccCcceeeCCc---EEEEEecCCCeEEEEEeccCCCCCC----cccccceEEEEEe
Confidence 445889999 999999999999999988776532 2333332 3334443322222211 2222345689999
Q ss_pred CCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEE
Q 029385 90 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEI 133 (194)
Q Consensus 90 ~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi 133 (194)
.|+.++...|-.--.++.. ...--.|||||.|-+
T Consensus 202 ~~igqLvpLLPnpc~PIS~----------~rWqT~D~DGNkILL 235 (236)
T PF15067_consen 202 EDIGQLVPLLPNPCSPISE----------TRWQTEDYDGNKILL 235 (236)
T ss_pred cchhhhcccCCCCcccccC----------CcceeeCCCCCEecc
Confidence 9999987765443332222 224578999998843
No 104
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=95.63 E-value=0.045 Score=38.28 Aligned_cols=82 Identities=12% Similarity=0.096 Sum_probs=54.8
Q ss_pred cEEEEeeCCHHHHHHHHHh-CCCeEEccceecCccceEEEEEeCCCC-CEEEEEecCCCCcCcC--CCcc--hhhccccc
Q 029385 83 NHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPDG-SMIEICNCDVLPVVPL--AGDA--VRIRSCTS 156 (194)
Q Consensus 83 ~hiaf~v~dl~~~~~~l~~-~Gi~~~~~~~~~~g~~~~~~~~~DPDG-~~iEi~~~~~~p~~p~--~~~~--~~~~~~~~ 156 (194)
+||+|.|+|++++.+.+.+ .|+........ .....+..++..++| ..|||++..... .++ ...| .+.+.+
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~-~~~~v~~~~~~~~~~~~~iELi~p~~~~-~~~~~~~~gi~Hia~~v-- 76 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRD-EPQGVRVAFLYLGDGPVQIELIQPLDGD-SPLDRGGGGIHHIAFEV-- 76 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEE-GCTTEEEEEEEETTETEEEEEEEESSTT-CHHHHTSSEEEEEEEEE--
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEec-CCCCEEEEEEEeCCCcEEEEEEEeCCCC-cccccCCCCEEEEEEEe--
Confidence 5999999999999999998 89886544322 223447778888888 689999975533 211 2333 344444
Q ss_pred ccchhhhhhhhhh
Q 029385 157 TVNCNFHQQQIQQ 169 (194)
Q Consensus 157 ~~~~~~~~~~~~~ 169 (194)
-|++...++++.
T Consensus 77 -~D~d~~~~~l~~ 88 (109)
T PF13669_consen 77 -DDLDAAIARLEA 88 (109)
T ss_dssp -SHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHH
Confidence 577777777654
No 105
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=95.62 E-value=0.19 Score=35.02 Aligned_cols=85 Identities=11% Similarity=0.092 Sum_probs=53.1
Q ss_pred CccEEEEeeCCHHHHHHHHHh-CCCeEEccceecCccceEEEEEeCCCCCEEEEEecCCCCcCcC--CCcc--hhhcccc
Q 029385 81 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLPVVPL--AGDA--VRIRSCT 155 (194)
Q Consensus 81 g~~hiaf~v~dl~~~~~~l~~-~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~~~p~~p~--~~~~--~~~~~~~ 155 (194)
++.||++.|.|++++.+..++ .|..+........+ ....+.+..+++..+|+......+..+. ...| .+.+.+
T Consensus 3 ~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~-~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~g~~h~~~~v- 80 (125)
T cd08352 3 GIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPER-GSYKLDLLLNGGYQLELFSFPNPPERPSYPEACGLRHLAFSV- 80 (125)
T ss_pred ccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCC-CcEEEEEecCCCcEEEEEEcCCCCCCCCCCcCCCceEEEEEe-
Confidence 678999999999999999984 89987654322221 1134555666788899886554322111 1112 233444
Q ss_pred cccchhhhhhhhhh
Q 029385 156 STVNCNFHQQQIQQ 169 (194)
Q Consensus 156 ~~~~~~~~~~~~~~ 169 (194)
-|++...+++..
T Consensus 81 --~d~~~~~~~l~~ 92 (125)
T cd08352 81 --EDIEAAVKHLKA 92 (125)
T ss_pred --CCHHHHHHHHHH
Confidence 567777777664
No 106
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=95.10 E-value=0.22 Score=34.71 Aligned_cols=89 Identities=12% Similarity=0.120 Sum_probs=53.4
Q ss_pred CccEEEEeeCCHHHHHHHHHh-CCCeEEccceecCccceEEEEEeCC---CCCEEEEEecCCCCc-CcCCC--cchhhcc
Q 029385 81 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDP---DGSMIEICNCDVLPV-VPLAG--DAVRIRS 153 (194)
Q Consensus 81 g~~hiaf~v~dl~~~~~~l~~-~Gi~~~~~~~~~~g~~~~~~~~~DP---DG~~iEi~~~~~~p~-~p~~~--~~~~~~~ 153 (194)
++.|+++.|+|+++..+..++ .|.+........++.....+++.+. .|..+++...+.... .+... ...+...
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~ 80 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFS 80 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEE
Confidence 467999999999999999985 6988765432222112245566665 678899987644222 11111 1234444
Q ss_pred cccccchhhhhhhhhh
Q 029385 154 CTSTVNCNFHQQQIQQ 169 (194)
Q Consensus 154 ~~~~~~~~~~~~~~~~ 169 (194)
+.+.-+++.+.++++.
T Consensus 81 v~~~~~~~~~~~~~~~ 96 (126)
T cd08346 81 VPSEASLDAWRERLRA 96 (126)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5333356777777664
No 107
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=94.95 E-value=0.69 Score=33.09 Aligned_cols=94 Identities=18% Similarity=0.228 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHccCCeEeeeCCCCC-----cc----eEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEEEEeeCC-
Q 029385 22 RSVEASLDFYQNVLGFFPIRRPGSFD-----FD----GAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCEN- 91 (194)
Q Consensus 22 ~Dle~s~~FY~~vLG~~~~~~~~~~~-----~~----~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~d- 91 (194)
.+.+++.+||.++||-..+......+ .. .+.+...+..+...... ... ......++++.++|
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~g~~lm~~D~~--~~~------~~~~~~sl~i~~~~~ 82 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIGGQKLMASDGG--PDF------PFGNNISLCIECDDE 82 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEETTEEEEEEEES--TS----------TTEEEEEEESSH
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEECCeEEEEECCC--CCC------CCCCcEEEEEEcCCH
Confidence 58999999999999953333211110 01 11222334444433322 111 11234678888885
Q ss_pred --HHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEE
Q 029385 92 --MAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEIC 134 (194)
Q Consensus 92 --l~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~ 134 (194)
+++++++|.+.|- + .. ..-++.|--|..|.|+
T Consensus 83 ee~~~~f~~Ls~gG~---------~-~~-~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 83 EEIDRIFDKLSEGGQ---------W-FS-RYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHHHHHTTTE---------T-CC-EEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHHHcCCC---------c-cc-eeEEEEeCCCCEEEeC
Confidence 6666788888775 1 12 6679999999999875
No 108
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=94.73 E-value=0.37 Score=34.87 Aligned_cols=86 Identities=13% Similarity=0.235 Sum_probs=53.4
Q ss_pred CccEEEEeeCCHHHHHHHHHhCCCeEEccceecC----------ccceEEEEEeCCCC-CEEEEEecCCC--CcC----c
Q 029385 81 KDNHISFQCENMAIVERRLKEMKIDYVKSRVEEG----------GINVDQLFFHDPDG-SMIEICNCDVL--PVV----P 143 (194)
Q Consensus 81 g~~hiaf~v~dl~~~~~~l~~~Gi~~~~~~~~~~----------g~~~~~~~~~DPDG-~~iEi~~~~~~--p~~----p 143 (194)
+++|+++.|.|+++..+...+.|..+.......+ +...+..++..|+| ..||+.+.... +.. +
T Consensus 3 ~i~Hi~i~v~Dl~~s~~FY~~LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~~~~~~~~~~~~~ 82 (142)
T cd08353 3 RMDNVGIVVRDLEAAIAFFLELGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFHHPAVIADHRPAP 82 (142)
T ss_pred eeeeEEEEeCCHHHHHHHHHHcCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEecCCCCcCcCCCCC
Confidence 5789999999999999999989987654432111 11234556666665 58999874321 111 1
Q ss_pred CCCcc--hhhcccccccchhhhhhhhhh
Q 029385 144 LAGDA--VRIRSCTSTVNCNFHQQQIQQ 169 (194)
Q Consensus 144 ~~~~~--~~~~~~~~~~~~~~~~~~~~~ 169 (194)
....| .+...+ -|+++..+++..
T Consensus 83 ~~~~g~~hia~~v---~d~d~~~~~l~~ 107 (142)
T cd08353 83 VNALGLRRVMFAV---DDIDARVARLRK 107 (142)
T ss_pred CCCCCceEEEEEe---CCHHHHHHHHHH
Confidence 11222 234444 688888888774
No 109
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=94.58 E-value=0.098 Score=36.59 Aligned_cols=89 Identities=21% Similarity=0.228 Sum_probs=39.8
Q ss_pred eeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEEEEeeC---
Q 029385 14 LNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCE--- 90 (194)
Q Consensus 14 i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~--- 90 (194)
+..+.|.|.| +++.+||+++||-..- ..+.+.+...+.-.. .+ ...=.+.-+-|.|+
T Consensus 6 ~e~i~LNV~d-~~~~~fy~~~f~~~~~-----------------~~l~f~ea~G~DL~~-~~-~~twDLe~Lkf~V~~~~ 65 (101)
T PF14507_consen 6 FESIELNVPD-AKSQSFYQSIFGGQLP-----------------FFLTFQEAQGPDLTI-EN-NETWDLEMLKFQVPKDF 65 (101)
T ss_dssp E-EEEEEE-T--T---S--H---HHHT-----------------TTEEEEE---CCGSS--T-TSBSSEEEEEEEES-S-
T ss_pred EEEEEEeCCC-hhHHHHHHhccccCCC-----------------ceEEEeeccCCcccc-CC-CcEEeeEEEEEEecCcc
Confidence 4578999999 8899999998862110 122222322221111 00 22224455778887
Q ss_pred CHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCE
Q 029385 91 NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSM 130 (194)
Q Consensus 91 dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~ 130 (194)
|+.++.+++.+.++-+-. .+ +.+...||.|.-
T Consensus 66 Dl~~L~~~le~~~~fidK-----k~---k~l~~~Dps~IE 97 (101)
T PF14507_consen 66 DLAALKSHLEEQEFFIDK-----KE---KFLVTSDPSQIE 97 (101)
T ss_dssp -HHHHHHHTTTS-EE--T-----T----SEEEEE-TTS-E
T ss_pred cHHHHHHHhcccceEecC-----Cc---eEEEEECCcceE
Confidence 899999999995543222 11 778888988754
No 110
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=94.24 E-value=0.53 Score=35.42 Aligned_cols=88 Identities=14% Similarity=0.099 Sum_probs=55.3
Q ss_pred CCccEEEEeeCCHHHHHHHHHh-CCCeEEccc---eec------------C-c-cceEEEEEeCCCCCEEEEEecCCCCc
Q 029385 80 PKDNHISFQCENMAIVERRLKE-MKIDYVKSR---VEE------------G-G-INVDQLFFHDPDGSMIEICNCDVLPV 141 (194)
Q Consensus 80 ~g~~hiaf~v~dl~~~~~~l~~-~Gi~~~~~~---~~~------------~-g-~~~~~~~~~DPDG~~iEi~~~~~~p~ 141 (194)
.++.|+++.|.|+++..+..++ .|.++.... ... + + ...+..++..++|..||+.+.... .
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~~-~ 81 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKNQ-E 81 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccCC-C
Confidence 3678999999999999999986 798764211 000 0 0 113455666678889999987542 2
Q ss_pred CcCC-----Ccchhhcccccccchhhhhhhhhh
Q 029385 142 VPLA-----GDAVRIRSCTSTVNCNFHQQQIQQ 169 (194)
Q Consensus 142 ~p~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
.|.. ..|...++. ..-|++...++++.
T Consensus 82 ~~~~~~~~~~~g~~Hla~-~v~dida~~~~l~~ 113 (162)
T TIGR03645 82 NPEDNFEYWKTGVFHFCV-QDPDVEGLAERIVA 113 (162)
T ss_pred CCCcccccccccceEEEE-EcCCHHHHHHHHHH
Confidence 2221 123333333 33588888888775
No 111
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=93.05 E-value=1.1 Score=31.16 Aligned_cols=86 Identities=12% Similarity=0.086 Sum_probs=50.9
Q ss_pred ccEEEEeeCCHHHHHHHHHh-CCCeEEccce-ecCccceEEEEEeCCCCCEEEEEecCCCCcC--cCC--Ccchhhcccc
Q 029385 82 DNHISFQCENMAIVERRLKE-MKIDYVKSRV-EEGGINVDQLFFHDPDGSMIEICNCDVLPVV--PLA--GDAVRIRSCT 155 (194)
Q Consensus 82 ~~hiaf~v~dl~~~~~~l~~-~Gi~~~~~~~-~~~g~~~~~~~~~DPDG~~iEi~~~~~~p~~--p~~--~~~~~~~~~~ 155 (194)
+.|+++.|.|+++..+...+ .|.+...... ...+. ...|+.-.+|..+++++.+..+.. +.. +...+...+.
T Consensus 2 ~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~hi~f~v~ 79 (125)
T cd07241 2 IEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGF--ESYFLSFDDGARLELMTRPDIAPSPNEGERTGWAHLAFSVG 79 (125)
T ss_pred ceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCc--eEEEEecCCCcEEEEEcCcccCCCcccCCCCceEEEEEECC
Confidence 57999999999999998886 5887643211 11221 333454457888999875432211 111 1123444453
Q ss_pred cccchhhhhhhhhh
Q 029385 156 STVNCNFHQQQIQQ 169 (194)
Q Consensus 156 ~~~~~~~~~~~~~~ 169 (194)
+.-+++.+.++++.
T Consensus 80 ~~~~v~~~~~~l~~ 93 (125)
T cd07241 80 SKEAVDELTERLRA 93 (125)
T ss_pred CHHHHHHHHHHHHH
Confidence 33467788888764
No 112
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=92.61 E-value=0.94 Score=30.49 Aligned_cols=81 Identities=7% Similarity=0.052 Sum_probs=50.1
Q ss_pred ccEEEEeeCCHHHHHHHHH-hCCCeEEccceecCccceEEEEEeCCCCCEEEEEecCCCCcCcCC--Ccchhhccccccc
Q 029385 82 DNHISFQCENMAIVERRLK-EMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLPVVPLA--GDAVRIRSCTSTV 158 (194)
Q Consensus 82 ~~hiaf~v~dl~~~~~~l~-~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~~~p~~p~~--~~~~~~~~~~~~~ 158 (194)
+.|+++.|+|++++.+... -.|......... .. ...++..+++..++|...+.....+-. ....+.+.+ -
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~-~~---~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~v---~ 73 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPF-LF---PGAWLYAGDGPQLHLIEEDPPDALPEGPGRDDHIAFRV---D 73 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCC-CC---CceEEEeCCCcEEEEEecCCCccccCCCcccceEEEEe---C
Confidence 4699999999999999887 668876543311 11 334666566668888875443211111 112344555 5
Q ss_pred chhhhhhhhhh
Q 029385 159 NCNFHQQQIQQ 169 (194)
Q Consensus 159 ~~~~~~~~~~~ 169 (194)
|++.+.++++.
T Consensus 74 d~~~~~~~l~~ 84 (114)
T cd07245 74 DLDAFRARLKA 84 (114)
T ss_pred CHHHHHHHHHH
Confidence 67788887774
No 113
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=92.09 E-value=1.4 Score=33.07 Aligned_cols=84 Identities=7% Similarity=0.019 Sum_probs=51.9
Q ss_pred CccEEEEeeCCHHHHHHHHHh-CCCeEEccceecCccceEEEEEeC-CCCCEEEEEecCCCCcCc--CCCcchhhccccc
Q 029385 81 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHD-PDGSMIEICNCDVLPVVP--LAGDAVRIRSCTS 156 (194)
Q Consensus 81 g~~hiaf~v~dl~~~~~~l~~-~Gi~~~~~~~~~~g~~~~~~~~~D-PDG~~iEi~~~~~~p~~p--~~~~~~~~~~~~~ 156 (194)
|+.||++.|.|+++..+...+ .|.++.... .+ ...++..+ .+|..|++.+....+... ......+.+.+.+
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~---~~--~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~d 75 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEE---GD--RVRLEEGGGGPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVPD 75 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeee---CC--EEEEEecCCCCCCEEEEEeCCCCCCCcccCCceEEEEEECCC
Confidence 578999999999999999976 598876432 11 12222222 358999998753222111 1112245666644
Q ss_pred ccchhhhhhhhhh
Q 029385 157 TVNCNFHQQQIQQ 169 (194)
Q Consensus 157 ~~~~~~~~~~~~~ 169 (194)
+-+++...++++.
T Consensus 76 ~~dvd~~~~~L~~ 88 (157)
T cd08347 76 DEELEAWKERLEA 88 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 5557778888774
No 114
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=91.64 E-value=2.1 Score=29.57 Aligned_cols=84 Identities=8% Similarity=0.061 Sum_probs=51.0
Q ss_pred ccEEEEeeCCHHHHHHHHHh-CCCeEEccceecCccceEEEEEeCCC---CCEEEEEecCCC-CcCcC-CCcchhhcccc
Q 029385 82 DNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPD---GSMIEICNCDVL-PVVPL-AGDAVRIRSCT 155 (194)
Q Consensus 82 ~~hiaf~v~dl~~~~~~l~~-~Gi~~~~~~~~~~g~~~~~~~~~DPD---G~~iEi~~~~~~-p~~p~-~~~~~~~~~~~ 155 (194)
..|+++.|.|+++..+...+ .|.+.........+ ....+++..++ +..+++...... +..+. .....+.+.+
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v- 78 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEG-KFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAV- 78 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCC-ceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEe-
Confidence 36999999999999999986 49987654322221 11334555554 578888764322 11111 1223455666
Q ss_pred cccchhhhhhhhhh
Q 029385 156 STVNCNFHQQQIQQ 169 (194)
Q Consensus 156 ~~~~~~~~~~~~~~ 169 (194)
-|++.+.+++..
T Consensus 79 --~did~~~~~l~~ 90 (121)
T cd07233 79 --DDVYAACERLEE 90 (121)
T ss_pred --CCHHHHHHHHHH
Confidence 467777777664
No 115
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=91.60 E-value=0.36 Score=36.77 Aligned_cols=84 Identities=13% Similarity=0.209 Sum_probs=41.5
Q ss_pred ccEEEEeeCCHHHHHHHH-HhCCCeEEccceecC-ccceEEEEEeCCCCCEEEEEecCCCCcC---c--C------CCcc
Q 029385 82 DNHISFQCENMAIVERRL-KEMKIDYVKSRVEEG-GINVDQLFFHDPDGSMIEICNCDVLPVV---P--L------AGDA 148 (194)
Q Consensus 82 ~~hiaf~v~dl~~~~~~l-~~~Gi~~~~~~~~~~-g~~~~~~~~~DPDG~~iEi~~~~~~p~~---p--~------~~~~ 148 (194)
+.|+.+.|+|+++..+++ +..|..+........ |-....++| +|| .|||....+.... + + ..+|
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f--~~~-YlEli~i~~~~~~~~~~~~~~~~~~~~~~g 77 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPF--GDG-YLELIAIDPEAPAPDRGRWFGLDRLAGGEG 77 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE---SSS-EEEEEEES-HHHSTGGGT-TTTHHHHT--E
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEee--CCc-eEEEEEeCCcccccccccceechhhcCCCC
Confidence 469999999999999999 888999886553332 333344444 678 9999995421111 0 0 1344
Q ss_pred hhhcccccccchhhhhhhhhh
Q 029385 149 VRIRSCTSTVNCNFHQQQIQQ 169 (194)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~ 169 (194)
...+.. ..-|.+...++++.
T Consensus 78 ~~~~~l-~t~d~~~~~~~l~~ 97 (175)
T PF13468_consen 78 LYGWAL-RTDDIEAVAARLRA 97 (175)
T ss_dssp EEEEEE-E-S-HHHHHHHHHT
T ss_pred eEEEEE-ecCCHHHHHHHHHh
Confidence 344444 44666666666664
No 116
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=91.16 E-value=1.6 Score=30.66 Aligned_cols=83 Identities=8% Similarity=0.031 Sum_probs=50.5
Q ss_pred CccEEEEeeCCHHHHHHHHHhC----CCeEEccceecCccceEEEEEeCCCCCEEEEEecCCCCc--CcC--CCcchhhc
Q 029385 81 KDNHISFQCENMAIVERRLKEM----KIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLPV--VPL--AGDAVRIR 152 (194)
Q Consensus 81 g~~hiaf~v~dl~~~~~~l~~~----Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~~~p~--~p~--~~~~~~~~ 152 (194)
++.|+.+.|.|+++..+...+. |.+..... .. ...|+...++..+++.+..+... +.. .....+.+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~---~~---~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~g~~hia~ 74 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEW---ED---GRSWRAGDGGTYLVLQQADGESAGRHDRRNPGLHHLAF 74 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEee---cc---CceEEecCCceEEEEEecccCCCcccccCCcCeeEEEE
Confidence 4689999999999999988765 88876533 11 22344335678899987654221 111 11123445
Q ss_pred ccccccchhhhhhhhhh
Q 029385 153 SCTSTVNCNFHQQQIQQ 169 (194)
Q Consensus 153 ~~~~~~~~~~~~~~~~~ 169 (194)
.+.+.-|++...+++..
T Consensus 75 ~v~~~~d~~~~~~~l~~ 91 (128)
T cd07242 75 RAPSREAVDELYARLAK 91 (128)
T ss_pred EcCCHHHHHHHHHHHHH
Confidence 55233467777777663
No 117
>PRK11478 putative lyase; Provisional
Probab=90.34 E-value=3 Score=29.21 Aligned_cols=85 Identities=12% Similarity=0.033 Sum_probs=48.7
Q ss_pred CccEEEEeeCCHHHHHHHHHh-CCCeEEccceecCccceEEEEEeCCCCCEEEEEecCCCCcCcC----CCcchhhcccc
Q 029385 81 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLPVVPL----AGDAVRIRSCT 155 (194)
Q Consensus 81 g~~hiaf~v~dl~~~~~~l~~-~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~~~p~~p~----~~~~~~~~~~~ 155 (194)
++.|+++.|+|+++..+...+ .|.++.......... .....+.-.++..+|+.+.......+- .....+.+.+
T Consensus 6 ~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~-~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~g~~hi~f~v- 83 (129)
T PRK11478 6 QVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARD-SWKGDLALNGQYVIELFSFPFPPERPSRPEACGLRHLAFSV- 83 (129)
T ss_pred eecEEEEEcCCHHHHHHHHHHHhCCEecccccccccc-cceeeEecCCCcEEEEEEecCCCCCCCCCCCCceeEEEEEe-
Confidence 578999999999999999875 698875432111100 011122224567899987533221111 1112344555
Q ss_pred cccchhhhhhhhhh
Q 029385 156 STVNCNFHQQQIQQ 169 (194)
Q Consensus 156 ~~~~~~~~~~~~~~ 169 (194)
-|++++.++++.
T Consensus 84 --~d~~~~~~~l~~ 95 (129)
T PRK11478 84 --DDIDAAVAHLES 95 (129)
T ss_pred --CCHHHHHHHHHH
Confidence 477777777764
No 118
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=90.02 E-value=2.6 Score=29.34 Aligned_cols=82 Identities=5% Similarity=0.054 Sum_probs=50.3
Q ss_pred CccEEEEeeCCHHHHHHHHHh-CCCeEEccceecCccceEEEEEeCCC-CCEEEEEecCCCCcCcC--CCcchhhccccc
Q 029385 81 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPD-GSMIEICNCDVLPVVPL--AGDAVRIRSCTS 156 (194)
Q Consensus 81 g~~hiaf~v~dl~~~~~~l~~-~Gi~~~~~~~~~~g~~~~~~~~~DPD-G~~iEi~~~~~~p~~p~--~~~~~~~~~~~~ 156 (194)
++.|+.+.|+|+++..+...+ .|..+.... + ..+++..++ +..+.+...+..+..+. .....+...+.+
T Consensus 2 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~---~----~~~~l~~~~~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v~~ 74 (125)
T cd07255 2 RIGAVTLRVADLERSLAFYQDVLGLEVLERT---D----STAVLGTGGKRPLLVLEEDPDAPPAPPGATGLYHFAILLPS 74 (125)
T ss_pred EEEEEEEEECCHHHHHHHHHhccCcEEEEcC---C----CEEEEecCCCeEEEEEEeCCCCCcccCCCCcEEEEEEECCC
Confidence 468999999999999999986 698887542 1 234555554 57788876543221111 111233344434
Q ss_pred ccchhhhhhhhhh
Q 029385 157 TVNCNFHQQQIQQ 169 (194)
Q Consensus 157 ~~~~~~~~~~~~~ 169 (194)
+-+++.+.+++..
T Consensus 75 ~~~v~~~~~~l~~ 87 (125)
T cd07255 75 RADLAAALRRLIE 87 (125)
T ss_pred HHHHHHHHHHHHH
Confidence 4567777776654
No 119
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=89.96 E-value=1.9 Score=29.69 Aligned_cols=90 Identities=9% Similarity=0.067 Sum_probs=53.4
Q ss_pred CccEEEEeeCCHHHHHHHHHh-CCCeEEccce-ecCccceEEEEEeCCCCCEEEEEecCCCCcCcCCC------cchhhc
Q 029385 81 KDNHISFQCENMAIVERRLKE-MKIDYVKSRV-EEGGINVDQLFFHDPDGSMIEICNCDVLPVVPLAG------DAVRIR 152 (194)
Q Consensus 81 g~~hiaf~v~dl~~~~~~l~~-~Gi~~~~~~~-~~~g~~~~~~~~~DPDG~~iEi~~~~~~p~~p~~~------~~~~~~ 152 (194)
+++|+++.|.|++++.+-..+ .|..+..... ...+......++...+ ..+++......+...... ...+..
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 79 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGE-GHIELFLNPSPPPRASGHSFPEHGGHHIAF 79 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTS-SCEEEEEEESSSSSSEEEHHHSHTSEEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccc-cceeeeeeccccccccccccccccceeEEE
Confidence 478999999999999998885 6999887664 2222233455555544 457776654322222211 112333
Q ss_pred ccccccchhhhhhhhhhCC
Q 029385 153 SCTSTVNCNFHQQQIQQEP 171 (194)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~ 171 (194)
-+-+.-|+....++++...
T Consensus 80 ~~~~~~dl~~~~~~l~~~g 98 (128)
T PF00903_consen 80 LAFDVDDLDAAYERLKAQG 98 (128)
T ss_dssp EESSHHHHHHHHHHHHHTT
T ss_pred EeccHHHHHHHHHHHhhcC
Confidence 3423356667777777543
No 120
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=89.84 E-value=2.7 Score=29.16 Aligned_cols=84 Identities=8% Similarity=0.007 Sum_probs=50.3
Q ss_pred ccEEEEeeCCHHHHHHHHHh-CCCeEEccceecCccceEEEEEeCCCCCEEEEEecCCCCcCc-----CCCcc--hhhcc
Q 029385 82 DNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLPVVP-----LAGDA--VRIRS 153 (194)
Q Consensus 82 ~~hiaf~v~dl~~~~~~l~~-~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~~~p~~p-----~~~~~--~~~~~ 153 (194)
+.|+++.|+|+++..+...+ .|..........++...+..++.. +|..++|.+........ -...+ .+.+.
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~~f~ 79 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGL-GNVQIELIEPLDDDSPIAKFLEKRGEGLHHIAFE 79 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEc-CCEEEEEEEECCCCCcHHHHHhcCCCceEEEEEE
Confidence 36999999999999999986 798876543221111223445554 78889998754311100 11122 24555
Q ss_pred cccccchhhhhhhhhh
Q 029385 154 CTSTVNCNFHQQQIQQ 169 (194)
Q Consensus 154 ~~~~~~~~~~~~~~~~ 169 (194)
+ -|++...++++.
T Consensus 80 v---~d~~~~~~~l~~ 92 (128)
T cd07249 80 V---DDIDAALARLKA 92 (128)
T ss_pred e---CCHHHHHHHHHH
Confidence 5 467777777664
No 121
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=88.14 E-value=4.9 Score=29.73 Aligned_cols=87 Identities=7% Similarity=0.001 Sum_probs=49.6
Q ss_pred CCCCccEEEEeeCCHHHHHHHHHh-CCCeEEccceec-C-ccceEEEEEe-CCCCCEEEEEecCCCCcCcCCCcchhhcc
Q 029385 78 INPKDNHISFQCENMAIVERRLKE-MKIDYVKSRVEE-G-GINVDQLFFH-DPDGSMIEICNCDVLPVVPLAGDAVRIRS 153 (194)
Q Consensus 78 ~~~g~~hiaf~v~dl~~~~~~l~~-~Gi~~~~~~~~~-~-g~~~~~~~~~-DPDG~~iEi~~~~~~p~~p~~~~~~~~~~ 153 (194)
...++.|+++.|+|+++..+...+ .|.++....... + +......|++ ++.+..+.+..... ......+.+.
T Consensus 6 ~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-----~~g~~Hiaf~ 80 (154)
T cd07237 6 GDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAEGPG-----PKRIHHLMLE 80 (154)
T ss_pred CCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEcCCC-----CceeEEEEEE
Confidence 345789999999999999999876 798865422111 0 1011333333 45566777654321 0112235566
Q ss_pred cccccchhhhhhhhhh
Q 029385 154 CTSTVNCNFHQQQIQQ 169 (194)
Q Consensus 154 ~~~~~~~~~~~~~~~~ 169 (194)
+.++-+++.+.++++.
T Consensus 81 V~d~~~l~~~~~~L~~ 96 (154)
T cd07237 81 VTSLDDVGRAYDRVRA 96 (154)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6344455566666653
No 122
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=88.12 E-value=4.5 Score=28.11 Aligned_cols=81 Identities=7% Similarity=0.004 Sum_probs=48.2
Q ss_pred ccEEEEeeCCHHHHHHHHHh----CCCeEEccceecCccceEEEEEeCC-CCCEEEEEecCCCCcCcCCCcchhhccccc
Q 029385 82 DNHISFQCENMAIVERRLKE----MKIDYVKSRVEEGGINVDQLFFHDP-DGSMIEICNCDVLPVVPLAGDAVRIRSCTS 156 (194)
Q Consensus 82 ~~hiaf~v~dl~~~~~~l~~----~Gi~~~~~~~~~~g~~~~~~~~~DP-DG~~iEi~~~~~~p~~p~~~~~~~~~~~~~ 156 (194)
+.|+.+.|.|+++..+..++ .|....... .+ ..+++..+ .+..+.++........+-.....+.+.+.+
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~---~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~hi~f~v~~ 74 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED---GP---GAVGYGKGGGGPDFWVTKPFDGEPATAGNGTHVAFAAPS 74 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec---CC---ceeEeccCCCCceEEEeccccCCCCCCCCceEEEEECCC
Confidence 36999999999999988887 588765432 11 23445555 467788876432211111122346677744
Q ss_pred ccchhhhhhhhh
Q 029385 157 TVNCNFHQQQIQ 168 (194)
Q Consensus 157 ~~~~~~~~~~~~ 168 (194)
+-+++...+++.
T Consensus 75 ~~~v~~~~~~~~ 86 (123)
T cd07262 75 REAVDAFHAAAL 86 (123)
T ss_pred HHHHHHHHHHHH
Confidence 445666666644
No 123
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=88.00 E-value=5.5 Score=26.97 Aligned_cols=80 Identities=8% Similarity=0.081 Sum_probs=47.8
Q ss_pred EEEEeeCCHHHHHHHHHh-CCCeEEccceecCccceEEEEEeCCCC--CEEEEEecCCCCc---CcCCCcchhhcccccc
Q 029385 84 HISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPDG--SMIEICNCDVLPV---VPLAGDAVRIRSCTST 157 (194)
Q Consensus 84 hiaf~v~dl~~~~~~l~~-~Gi~~~~~~~~~~g~~~~~~~~~DPDG--~~iEi~~~~~~p~---~p~~~~~~~~~~~~~~ 157 (194)
|+++.|.|+++..+..++ .|.++........+ ...+.+.++++ ..+++......+. .+-.....+.+.+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v--- 75 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGGG--FRWVTVAPPGSPETSLVLAPPANPAAMSGLQPGGTPGLVLAT--- 75 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCCC--cEEEEEeCCCCCeeEEEEeCCCCccccccccCCCceEEEEEe---
Confidence 799999999999999986 89987754321122 24556666654 4566554332210 1111222455555
Q ss_pred cchhhhhhhhh
Q 029385 158 VNCNFHQQQIQ 168 (194)
Q Consensus 158 ~~~~~~~~~~~ 168 (194)
-|++...+++.
T Consensus 76 ~di~~~~~~l~ 86 (119)
T cd07263 76 DDIDATYEELK 86 (119)
T ss_pred hHHHHHHHHHH
Confidence 46777777765
No 124
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=87.69 E-value=2.8 Score=27.88 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=35.2
Q ss_pred CHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEecC
Q 029385 91 NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 137 (194)
Q Consensus 91 dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~ 137 (194)
+.+++.+.+.+.|..+..-..+..+ .+.+...|.||+.+||.-.+
T Consensus 30 ~~~~~~~~l~~~G~~v~~ve~~~~g--~yev~~~~~dG~~~ev~vD~ 74 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREVEFDDDG--CYEVEARDKDGKKVEVYVDP 74 (83)
T ss_pred CHHHHHHHHHhcCCceEEEEEcCCC--EEEEEEEECCCCEEEEEEcC
Confidence 7899999999999966654432333 37889999999999998653
No 125
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=87.21 E-value=5.6 Score=26.09 Aligned_cols=79 Identities=9% Similarity=0.124 Sum_probs=49.8
Q ss_pred EEEEeeCCHHHHHHHHHh-CCCeEEccceecCccceEEEEEeCCCCCEEEEEecCCCCcC-cCCCcchhhcccccccchh
Q 029385 84 HISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLPVV-PLAGDAVRIRSCTSTVNCN 161 (194)
Q Consensus 84 hiaf~v~dl~~~~~~l~~-~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~~~p~~-p~~~~~~~~~~~~~~~~~~ 161 (194)
|+.+.|.|++++.+.+.+ .|.+....... . .....++.++ +..++|....+.... .-.....+.+.+ -|++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~-~--~~~~~~~~~~-~~~i~l~~~~~~~~~~~~~~~~~~~~~v---~~~~ 73 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN-G--GAEFAVLGLG-GTRLELFEGDEPAPAPSGGGGVHLAFEV---DDVD 73 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc-C--CEEEEEEecC-CceEEEecCCCCCCcccCCCeeEEEEEC---CCHH
Confidence 789999999999999997 89887764421 1 1255566665 889999986543221 111112334444 4556
Q ss_pred hhhhhhhh
Q 029385 162 FHQQQIQQ 169 (194)
Q Consensus 162 ~~~~~~~~ 169 (194)
.+.+++..
T Consensus 74 ~~~~~l~~ 81 (112)
T cd06587 74 AAYERLKA 81 (112)
T ss_pred HHHHHHHH
Confidence 67777653
No 126
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=86.68 E-value=3.5 Score=32.00 Aligned_cols=86 Identities=12% Similarity=0.004 Sum_probs=54.3
Q ss_pred CccEEEEeeC--CHHHHHHHHHh-CCCeEEccceecC-ccceEEEEEeCCCC-CEEEEEecCCC--C--cC---cC---C
Q 029385 81 KDNHISFQCE--NMAIVERRLKE-MKIDYVKSRVEEG-GINVDQLFFHDPDG-SMIEICNCDVL--P--VV---PL---A 145 (194)
Q Consensus 81 g~~hiaf~v~--dl~~~~~~l~~-~Gi~~~~~~~~~~-g~~~~~~~~~DPDG-~~iEi~~~~~~--p--~~---p~---~ 145 (194)
++.|+++.|+ |++++.+...+ .|.+......... ..+.+...+..|+| ..++|.+.... + .. .. .
T Consensus 3 ~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~~~~~s~~~~fl~~~~G~ 82 (191)
T cd07250 3 RIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPASGKRKSQIQEFLEYYGGA 82 (191)
T ss_pred eeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCCCCCccHHHHHHHHhCCC
Confidence 5789999999 99999999865 7988665332111 12346777888865 56788765431 1 00 01 1
Q ss_pred Ccchhhcccccccchhhhhhhhhh
Q 029385 146 GDAVRIRSCTSTVNCNFHQQQIQQ 169 (194)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
+...+.+.| -|+....++++.
T Consensus 83 Gv~HIAf~v---dDI~~~~~~L~~ 103 (191)
T cd07250 83 GVQHIALAT---DDIFATVAALRA 103 (191)
T ss_pred ceeEEEEEC---CCHHHHHHHHHH
Confidence 122466777 577777777664
No 127
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=86.24 E-value=6.9 Score=28.06 Aligned_cols=81 Identities=7% Similarity=-0.022 Sum_probs=47.6
Q ss_pred ccEEEEeeCCHHHHHHHHHh-CCCeEEccceecCccceEEEEEeCCCCCEEEEEecCCCCc--C---cCCCcc--hhhcc
Q 029385 82 DNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLPV--V---PLAGDA--VRIRS 153 (194)
Q Consensus 82 ~~hiaf~v~dl~~~~~~l~~-~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~~~p~--~---p~~~~~--~~~~~ 153 (194)
+.|+++.|+|+++..+..++ .|.++...... .+ ....++. .++..+++....+... . .....+ .+.+.
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~-~~--~~~~~~~-~g~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia~~ 76 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGS-ED--KASYLLR-QGDINFVLNSPLNSFAPVADFLEKHGDGVCDVAFR 76 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCC-Cc--eEEEEEE-cCCEEEEEecCCCCCCchHHHHHhcCCceEEEEEE
Confidence 36999999999999999998 89987654311 11 1333343 3445566654322111 0 011122 34566
Q ss_pred cccccchhhhhhhhhh
Q 029385 154 CTSTVNCNFHQQQIQQ 169 (194)
Q Consensus 154 ~~~~~~~~~~~~~~~~ 169 (194)
+ -|+++..+++..
T Consensus 77 V---~Dvda~~~~l~~ 89 (136)
T cd08342 77 V---DDAAAAYERAVA 89 (136)
T ss_pred e---CCHHHHHHHHHH
Confidence 6 578888888763
No 128
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=85.59 E-value=11 Score=29.15 Aligned_cols=88 Identities=9% Similarity=-0.049 Sum_probs=53.1
Q ss_pred CCCCCccEEEEeeCCHHHHHHHHH-hCCCeEEccceecCccceEEEEEeC-------------------CCCCEEEEEec
Q 029385 77 NINPKDNHISFQCENMAIVERRLK-EMKIDYVKSRVEEGGINVDQLFFHD-------------------PDGSMIEICNC 136 (194)
Q Consensus 77 ~~~~g~~hiaf~v~dl~~~~~~l~-~~Gi~~~~~~~~~~g~~~~~~~~~D-------------------PDG~~iEi~~~ 136 (194)
..+-.++|++|.|.|+++..+..+ -.|.++........+ . ..++|.. ..+..|||.+.
T Consensus 23 ~~~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~-~-~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~ 100 (185)
T PLN03042 23 TKGYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEM-K-FSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHN 100 (185)
T ss_pred CCCcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCC-c-eEEEEEecCCcccCCcchhhcccccccCCCEEEEEEc
Confidence 445578999999999999999887 579987665322221 1 3344432 13569999874
Q ss_pred CCCCcCc----C-------CCcchhhcccccccchhhhhhhhhh
Q 029385 137 DVLPVVP----L-------AGDAVRIRSCTSTVNCNFHQQQIQQ 169 (194)
Q Consensus 137 ~~~p~~p----~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
......| + .+...+...+ -|++...++++.
T Consensus 101 ~~~~~~p~~~~~~~~~~~~~G~~Hlaf~V---~Dvd~~~~~L~~ 141 (185)
T PLN03042 101 WGTESDPEFKGYHNGNSDPRGFGHIGITV---DDVYKACERFEK 141 (185)
T ss_pred CCCcccccccccccCCCCCCCccEEEEEc---CCHHHHHHHHHH
Confidence 3211101 1 1223355566 467777777664
No 129
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=84.95 E-value=5.9 Score=27.19 Aligned_cols=75 Identities=7% Similarity=0.055 Sum_probs=44.0
Q ss_pred CccEEEEeeCCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCC-EEEEEecCCCCcCcCCCcchhhcccccccc
Q 029385 81 KDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGS-MIEICNCDVLPVVPLAGDAVRIRSCTSTVN 159 (194)
Q Consensus 81 g~~hiaf~v~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~-~iEi~~~~~~p~~p~~~~~~~~~~~~~~~~ 159 (194)
++.|+++.|.|++++.+.....|..+.... + ...++.+..+. .+.+.... ...+ ..+.+.+ ..-|
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~~lG~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~-~~~d 67 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYEAFGLDVREEG---D----GLELRTAGNDHRWARLLEGA---RKRL---AYLSFGI-FEDD 67 (112)
T ss_pred ceeEEEEecCCHHHHHHHHHHhCCcEEeec---C----ceEEEecCCCceEEEeecCC---CCce---eeEEEEe-Ehhh
Confidence 568999999999999999988898775422 1 11122222233 33343321 1111 1223444 4468
Q ss_pred hhhhhhhhhh
Q 029385 160 CNFHQQQIQQ 169 (194)
Q Consensus 160 ~~~~~~~~~~ 169 (194)
++.+.++++.
T Consensus 68 ~~~~~~~l~~ 77 (112)
T cd08344 68 FAAFARHLEA 77 (112)
T ss_pred HHHHHHHHHH
Confidence 8888888775
No 130
>PRK11700 hypothetical protein; Provisional
Probab=84.74 E-value=12 Score=29.19 Aligned_cols=75 Identities=17% Similarity=0.138 Sum_probs=48.5
Q ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEe-------CCcEEEEeecCCCCCCCCCCCCCCCCccE
Q 029385 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFN-------YGMGIHLLKSEEPDNLPKAGKNINPKDNH 84 (194)
Q Consensus 12 ~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~-------~g~~~~l~~~~~~~~~~~~~~~~~~g~~h 84 (194)
-.++||++.|++.+.+.+|-+..+-.-..-....-.+.-..++. .+..+..++...|.... ....|.-|
T Consensus 38 ~~~DHialR~n~~~tAe~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~w~I~cvELP~P~~k~----Yp~eGWEH 113 (187)
T PRK11700 38 LEADHIALRCNQNETAERWRQGFLQCGELLSENIINGRPICLFELDQPLQVGHWSIDCVELPYPGEKR----YPHEGWEH 113 (187)
T ss_pred ccCcEEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCCCC----CCCCCceE
Confidence 35789999999999999999886655332221111112222222 24567788877765422 44679999
Q ss_pred EEEeeC
Q 029385 85 ISFQCE 90 (194)
Q Consensus 85 iaf~v~ 90 (194)
|-|.++
T Consensus 114 IElVlp 119 (187)
T PRK11700 114 IELVLP 119 (187)
T ss_pred EEEEec
Confidence 999998
No 131
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=84.37 E-value=7.4 Score=27.75 Aligned_cols=84 Identities=15% Similarity=0.061 Sum_probs=48.1
Q ss_pred CccEEEEeeCCHHHHHHHHHh-CCCeEEccceecCccceEEEEEeCCCCCEEEEEecCCCCcCcCCCcchhhcccccccc
Q 029385 81 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLPVVPLAGDAVRIRSCTSTVN 159 (194)
Q Consensus 81 g~~hiaf~v~dl~~~~~~l~~-~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~~~p~~p~~~~~~~~~~~~~~~~ 159 (194)
++.|+++.|+|+++..+...+ .|..................++. -.|..+++.+... +..+ ....+.+.+ +.-+
T Consensus 4 ~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~~-~~~~--~~~Hiaf~v-~~~~ 78 (131)
T cd08364 4 GLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFL-IGGLWIAIMEGDS-LQER--TYNHIAFKI-SDSD 78 (131)
T ss_pred cEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEE-cCCeEEEEecCCC-CCCC--CceEEEEEc-CHHH
Confidence 678999999999999999876 79865443211100000111222 2357788875432 2111 112355666 3347
Q ss_pred hhhhhhhhhh
Q 029385 160 CNFHQQQIQQ 169 (194)
Q Consensus 160 ~~~~~~~~~~ 169 (194)
++.+.++++.
T Consensus 79 ld~~~~~l~~ 88 (131)
T cd08364 79 VDEYTERIKA 88 (131)
T ss_pred HHHHHHHHHH
Confidence 8888887763
No 132
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=84.35 E-value=15 Score=27.51 Aligned_cols=73 Identities=14% Similarity=0.139 Sum_probs=47.4
Q ss_pred eeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEe-------CCcEEEEeecCCCCCCCCCCCCCCCCccEEE
Q 029385 14 LNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFN-------YGMGIHLLKSEEPDNLPKAGKNINPKDNHIS 86 (194)
Q Consensus 14 i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~-------~g~~~~l~~~~~~~~~~~~~~~~~~g~~hia 86 (194)
++||+|.|++.+.+.+|-+..+..-..-....-...-..++. .+..+..++...|.... ....|.-||-
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~~~I~cvELP~P~~k~----Yp~eGWEHIE 77 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENEINGRPIALIKLEKPLQFAGWSISIVELPFPKDKK----YPQEGWEHIE 77 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCCCC----CCCCCceEEE
Confidence 689999999999999999887765332221111112222222 24567788877665422 4467999999
Q ss_pred EeeC
Q 029385 87 FQCE 90 (194)
Q Consensus 87 f~v~ 90 (194)
|.++
T Consensus 78 ~Vlp 81 (149)
T cd07268 78 IVIP 81 (149)
T ss_pred EEec
Confidence 9998
No 133
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=84.28 E-value=9 Score=27.03 Aligned_cols=83 Identities=8% Similarity=0.028 Sum_probs=48.3
Q ss_pred CccEEEEeeCCHHHHHHHHHh-CCCeEEccceecCccceEEEEEeCC--CCCEEEEEecCCCCc-CcCCCcchhhccccc
Q 029385 81 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDP--DGSMIEICNCDVLPV-VPLAGDAVRIRSCTS 156 (194)
Q Consensus 81 g~~hiaf~v~dl~~~~~~l~~-~Gi~~~~~~~~~~g~~~~~~~~~DP--DG~~iEi~~~~~~p~-~p~~~~~~~~~~~~~ 156 (194)
++.|+.+.|+|+++..+...+ .|..+.... .+. ...|+..+ .+..+.+........ .+-.....+.+.+.+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~---~~~--~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~ 75 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRG---PLG--GLVFLSRDPDEHHQIALITGRPAAPPPGPAGLNHIAFEVDS 75 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeec---cCC--cEEEEEecCCCceEEEEEecCCCCCCCCCCCceEEEEEeCC
Confidence 357999999999999999986 798876432 111 33455543 356788876543211 111122235566634
Q ss_pred ccchhhhhhhhh
Q 029385 157 TVNCNFHQQQIQ 168 (194)
Q Consensus 157 ~~~~~~~~~~~~ 168 (194)
+-++..+.+++.
T Consensus 76 ~~~v~~~~~~l~ 87 (134)
T cd08348 76 LDDLRDLYERLR 87 (134)
T ss_pred HHHHHHHHHHHH
Confidence 334455666655
No 134
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=83.53 E-value=10 Score=26.29 Aligned_cols=83 Identities=6% Similarity=0.042 Sum_probs=48.3
Q ss_pred ccEEEEeeCCHHHHHHHHH-hCCCeEEccceecCccceEEEEEeCCCCCEEEEEecCCC--CcC---cCCCcc--hhhcc
Q 029385 82 DNHISFQCENMAIVERRLK-EMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVL--PVV---PLAGDA--VRIRS 153 (194)
Q Consensus 82 ~~hiaf~v~dl~~~~~~l~-~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~~~--p~~---p~~~~~--~~~~~ 153 (194)
+.|+++.|.|++++.+..+ -.|.+...... ..... ..+++..+++..++|...... +.. +....+ .+.+.
T Consensus 2 i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~-~~~~~-~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~~i~~~ 79 (128)
T TIGR03081 2 IDHVGIAVPDLEEAAKLYEDVLGAHVSHIEE-VPEQG-VKVVFIALGNTKVELLEPLGEDSPIAKFLEKNGGGIHHIAIE 79 (128)
T ss_pred CCEEEEEeCCHHHHHHHHHHHhCCCCcccee-CCCCC-cEEEEEecCCEEEEEEecCCCCChHHHHHhcCCCceEEEEEE
Confidence 5799999999999999998 46988654321 11111 233444345678998864221 111 111112 34455
Q ss_pred cccccchhhhhhhhhh
Q 029385 154 CTSTVNCNFHQQQIQQ 169 (194)
Q Consensus 154 ~~~~~~~~~~~~~~~~ 169 (194)
+ -|++...++++.
T Consensus 80 v---~di~~~~~~l~~ 92 (128)
T TIGR03081 80 V---DDIEAALETLKE 92 (128)
T ss_pred c---CCHHHHHHHHHH
Confidence 5 477777777664
No 135
>PLN02367 lactoylglutathione lyase
Probab=83.21 E-value=7.3 Score=31.49 Aligned_cols=54 Identities=17% Similarity=0.341 Sum_probs=37.1
Q ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcc-eEEEEe-CCcEEEEeecC
Q 029385 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFD-GAWLFN-YGMGIHLLKSE 66 (194)
Q Consensus 12 ~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~-~~~~~~-~g~~~~l~~~~ 66 (194)
.+++|++|.|.|++++.+..++ .|.++...+...... ..|+.. .|.-+++++..
T Consensus 168 ~G~~HIaf~VdDVdaa~erL~a-~Gv~~v~~P~~g~~~riaFIkDPDGn~IEL~e~~ 223 (233)
T PLN02367 168 RGFGHIGITVDDVYKACERFEE-LGVEFVKKPNDGKMKGIAFIKDPDGYWIEIFDLK 223 (233)
T ss_pred CCceEEEEEcCCHHHHHHHHHH-CCCEEEeCCccCCceEEEEEECCCCCEEEEEecc
Confidence 4799999999999999999987 999988655422211 123322 34566776654
No 136
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=82.24 E-value=8.7 Score=29.92 Aligned_cols=75 Identities=19% Similarity=0.123 Sum_probs=42.5
Q ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEE-------EeCCcEEEEeecCCCCCCCCCCCCCCCCccE
Q 029385 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWL-------FNYGMGIHLLKSEEPDNLPKAGKNINPKDNH 84 (194)
Q Consensus 12 ~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~-------~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~h 84 (194)
-.++||++.|++.+.+.+|-+..+..-..-....-.+.-.++ ...+..+.+++.+.|.... ....|.-|
T Consensus 33 ~~~DHialRvn~~~~A~~~~~~l~~~G~llSen~INGRPI~l~~L~qPL~~~~~~I~~vELP~P~~K~----Yp~eGWEH 108 (185)
T PF06185_consen 33 YEIDHIALRVNSNETAERWKQALLQCGELLSENMINGRPICLFKLNQPLQFGGWSIDCVELPYPKDKR----YPQEGWEH 108 (185)
T ss_dssp -EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEE---SS------SS-EEEE
T ss_pred cCCcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCCeeEEEEEcCCchhcCCeeEEEEEeCCCCCCC----CCCCCceE
Confidence 357999999999999999999887764333221111111222 2235568888887665422 44679999
Q ss_pred EEEeeC
Q 029385 85 ISFQCE 90 (194)
Q Consensus 85 iaf~v~ 90 (194)
|-|.++
T Consensus 109 IE~Vip 114 (185)
T PF06185_consen 109 IEFVIP 114 (185)
T ss_dssp EEEE--
T ss_pred EEEEec
Confidence 999998
No 137
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=81.67 E-value=11 Score=26.01 Aligned_cols=83 Identities=8% Similarity=0.049 Sum_probs=46.5
Q ss_pred ccEEEEeeCCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEecCC----CCcCc--CCCcchhhcccc
Q 029385 82 DNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDV----LPVVP--LAGDAVRIRSCT 155 (194)
Q Consensus 82 ~~hiaf~v~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~~----~p~~p--~~~~~~~~~~~~ 155 (194)
+.|+++.|+|+++..+.....|.++.... ... ....+..++|..+.+..... .+..+ ......+...|-
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~LGf~~~~~~---~~~--~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRRLGFDFPEEA---DDE--PHVEAVLPGGVRLAWDTVESIRSFTPGWTPTGGHRIALAFLCE 75 (122)
T ss_pred CceEEEEeccHHHHHHHHHHhCceecCCc---CCC--CcEEEEeCCCEEEEEEcccceeeecCCCCCCCCCcEEEEEEcC
Confidence 36899999999999999988898764322 111 22334445566665543211 11121 111122334452
Q ss_pred cccchhhhhhhhhh
Q 029385 156 STVNCNFHQQQIQQ 169 (194)
Q Consensus 156 ~~~~~~~~~~~~~~ 169 (194)
+.-|++.+.++++.
T Consensus 76 ~~~dvd~~~~~l~~ 89 (122)
T cd07235 76 TPAEVDALYAELVG 89 (122)
T ss_pred CHHHHHHHHHHHHH
Confidence 33478888888764
No 138
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=81.10 E-value=18 Score=26.15 Aligned_cols=73 Identities=11% Similarity=0.042 Sum_probs=43.6
Q ss_pred CccEEEEeeCCHHHHHHHHH-hCCCeEEccceecCc---------cceEE-EEEe---CCCCCEEEEEecCCCCcCcCCC
Q 029385 81 KDNHISFQCENMAIVERRLK-EMKIDYVKSRVEEGG---------INVDQ-LFFH---DPDGSMIEICNCDVLPVVPLAG 146 (194)
Q Consensus 81 g~~hiaf~v~dl~~~~~~l~-~~Gi~~~~~~~~~~g---------~~~~~-~~~~---DPDG~~iEi~~~~~~p~~p~~~ 146 (194)
...|+++.|.|+++..+-.. ..|.+.........+ .+... +++. +..+..+|+.........+...
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g~ 81 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELGN 81 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCCC
Confidence 46799999999999999996 479987653311110 01122 2232 3467789999644333234432
Q ss_pred cchhhccc
Q 029385 147 DAVRIRSC 154 (194)
Q Consensus 147 ~~~~~~~~ 154 (194)
+.+.++.
T Consensus 82 -~~~hlav 88 (127)
T cd08358 82 -DFLGITI 88 (127)
T ss_pred -CEEEEEE
Confidence 4455555
No 139
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=80.49 E-value=12 Score=26.89 Aligned_cols=80 Identities=14% Similarity=0.152 Sum_probs=48.5
Q ss_pred CccEEEEeeCCHHHHHHHHH-hCCCeEEccceecCccceEEEEEeCCCCCEEEEEecCCCCcCcC-CCcchhhccccccc
Q 029385 81 KDNHISFQCENMAIVERRLK-EMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLPVVPL-AGDAVRIRSCTSTV 158 (194)
Q Consensus 81 g~~hiaf~v~dl~~~~~~l~-~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~~~p~~p~-~~~~~~~~~~~~~~ 158 (194)
++.|+++.|+|+++..+... ..|.++.... + ...++.- +|..+.+...+..+.... ..-..+.+.+ ..-
T Consensus 4 ~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~----~---~~~~~~~-~g~~l~l~~~~~~~~~~~~~~~~hiaf~v-~~~ 74 (139)
T PRK04101 4 GINHICFSVSNLEKSIEFYEKVLGAKLLVKG----R---KTAYFDL-NGLWIALNEEKDIPRNEIHQSYTHIAFSI-EEE 74 (139)
T ss_pred cEEEEEEEecCHHHHHHHHHhccCCEEEeec----C---eeEEEec-CCeEEEeeccCCCCCccCCCCeeEEEEEe-cHH
Confidence 57899999999999999987 4788765321 1 2344443 567777754432222111 1112345555 445
Q ss_pred chhhhhhhhhh
Q 029385 159 NCNFHQQQIQQ 169 (194)
Q Consensus 159 ~~~~~~~~~~~ 169 (194)
|++.+.+++.+
T Consensus 75 dv~~~~~~l~~ 85 (139)
T PRK04101 75 DFDHWYQRLKE 85 (139)
T ss_pred HHHHHHHHHHH
Confidence 78888777664
No 140
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=79.45 E-value=11 Score=28.74 Aligned_cols=32 Identities=9% Similarity=0.218 Sum_probs=28.2
Q ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCC
Q 029385 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPG 44 (194)
Q Consensus 12 ~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~ 44 (194)
++.+||.|.|+|+.++..-+++ +|.+...+..
T Consensus 114 rGfgHIci~V~di~sac~~lke-kGV~f~Kk~~ 145 (170)
T KOG2944|consen 114 RGFGHICIEVDDINSACERLKE-KGVRFKKKLK 145 (170)
T ss_pred CccceEEEEeCCHHHHHHHHHH-hCceeeecCC
Confidence 6889999999999999999987 9999666654
No 141
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=79.40 E-value=16 Score=27.33 Aligned_cols=29 Identities=3% Similarity=0.155 Sum_probs=24.7
Q ss_pred CccEEEEeeCCHHHHHHHHH-hCCCeEEcc
Q 029385 81 KDNHISFQCENMAIVERRLK-EMKIDYVKS 109 (194)
Q Consensus 81 g~~hiaf~v~dl~~~~~~l~-~~Gi~~~~~ 109 (194)
++.|++|.|+|+++..+... -.|.++...
T Consensus 6 ~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~ 35 (166)
T cd09014 6 RLDHVNLLASDVDANRDFMEEVLGFRLREQ 35 (166)
T ss_pred eeeeEEEEcCCHHHHHHHHHHccCCEEEEE
Confidence 57899999999999999997 479887543
No 142
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.23 E-value=5.3 Score=26.08 Aligned_cols=40 Identities=18% Similarity=0.300 Sum_probs=32.4
Q ss_pred HHHHHHHHHhCCCeEEccceec-CccceEEEEEeCCCCCEE
Q 029385 92 MAIVERRLKEMKIDYVKSRVEE-GGINVDQLFFHDPDGSMI 131 (194)
Q Consensus 92 l~~~~~~l~~~Gi~~~~~~~~~-~g~~~~~~~~~DPDG~~i 131 (194)
+.++.+-+.+.|+.+..+.+.. ++.....||+.|.+|+.+
T Consensus 15 L~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl 55 (72)
T cd04895 15 LLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKL 55 (72)
T ss_pred HHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCC
Confidence 6778889999999999887654 344569999999999866
No 143
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=78.50 E-value=14 Score=25.88 Aligned_cols=75 Identities=9% Similarity=0.141 Sum_probs=47.6
Q ss_pred CccEEEEeeCCHHHHHHHHHh-CCCeEEccceecCccceEEEEEe-CCCCCEEEEEecCCCCcCcCCCcchhhccccccc
Q 029385 81 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFH-DPDGSMIEICNCDVLPVVPLAGDAVRIRSCTSTV 158 (194)
Q Consensus 81 g~~hiaf~v~dl~~~~~~l~~-~Gi~~~~~~~~~~g~~~~~~~~~-DPDG~~iEi~~~~~~p~~p~~~~~~~~~~~~~~~ 158 (194)
++.|+++.|.|++++.+...+ .|.+..... . ...|+. +.++..+.+.... + ....+...+.++-
T Consensus 6 ~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~---~----~~~~l~~~~~~~~i~l~~~~--~-----~~~~iaf~v~~~~ 71 (124)
T cd08361 6 DIAYVRLGTRDLAGATRFATDILGLQVAERT---A----KATYFRSDARDHTLVYIEGD--P-----AEQASGFELRDDD 71 (124)
T ss_pred EeeEEEEeeCCHHHHHHHHHhccCceeccCC---C----CeEEEEcCCccEEEEEEeCC--C-----ceEEEEEEECCHH
Confidence 567999999999999999986 598865432 1 123443 4456666665322 1 1123455564556
Q ss_pred chhhhhhhhhh
Q 029385 159 NCNFHQQQIQQ 169 (194)
Q Consensus 159 ~~~~~~~~~~~ 169 (194)
|++...+++++
T Consensus 72 dv~~~~~~l~~ 82 (124)
T cd08361 72 ALESAATELEQ 82 (124)
T ss_pred HHHHHHHHHHH
Confidence 78888888765
No 144
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=77.58 E-value=15 Score=25.00 Aligned_cols=81 Identities=10% Similarity=0.076 Sum_probs=45.9
Q ss_pred CccEEEEeeCCHHHHHHHHHh-CCCeEEccceecCccceEEEEEeCCCCCEEEEEecCCC--C--cCcCCCcchhhcccc
Q 029385 81 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVL--P--VVPLAGDAVRIRSCT 155 (194)
Q Consensus 81 g~~hiaf~v~dl~~~~~~l~~-~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~~~--p--~~p~~~~~~~~~~~~ 155 (194)
++.|+.+.|+|+++..+..++ .|......... .+ ...+.- ++..+++...... + ..+......+...+.
T Consensus 3 ~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~-~~----~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~hi~~~~~ 76 (125)
T cd07253 3 RIDHVVLTVADIEATLDFYTRVLGMEVVRFGEE-VG----RKALRF-GSQKINLHPVGGEFEPAAGSPGPGSDDLCLITE 76 (125)
T ss_pred ccceEEEEecCHHHHHHHHHHHhCceeeccccc-CC----ceEEEe-CCEEEEEecCCCccCcCccCCCCCCceEEEEec
Confidence 578999999999999999987 79887654311 11 122222 2367888764321 1 111111123334441
Q ss_pred cccchhhhhhhhhh
Q 029385 156 STVNCNFHQQQIQQ 169 (194)
Q Consensus 156 ~~~~~~~~~~~~~~ 169 (194)
+ +++.+.++++.
T Consensus 77 ~--~~~~~~~~l~~ 88 (125)
T cd07253 77 P--PIDELVAHLEA 88 (125)
T ss_pred c--cHHHHHHHHHH
Confidence 1 26677777664
No 145
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=77.37 E-value=20 Score=24.89 Aligned_cols=77 Identities=5% Similarity=0.028 Sum_probs=45.2
Q ss_pred CccEEEEeeCCHHHHHHHHHh-CCCeEEccceecCccceEEEEEeCC-CCCEEEEEecCCCCcCcCCCcchhhccccccc
Q 029385 81 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDP-DGSMIEICNCDVLPVVPLAGDAVRIRSCTSTV 158 (194)
Q Consensus 81 g~~hiaf~v~dl~~~~~~l~~-~Gi~~~~~~~~~~g~~~~~~~~~DP-DG~~iEi~~~~~~p~~p~~~~~~~~~~~~~~~ 158 (194)
++.|+++.|.|+++..+..++ .|.+..... .+ ...|+..+ .+..+.+...+. .....+.+.+.++-
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~---~~---~~~~~~~~~~~~~~~l~~~~~------~~~~~~~f~v~~~~ 69 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRP---ED---GALYLRMDDRAWRIAVHPGEA------DDLAYAGWEVADEA 69 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCC---CC---CeEEEEccCCceEEEEEeCCC------CceeEEEEEECCHH
Confidence 567999999999999999976 698765432 11 23445443 344555543221 11123444553444
Q ss_pred chhhhhhhhhh
Q 029385 159 NCNFHQQQIQQ 169 (194)
Q Consensus 159 ~~~~~~~~~~~ 169 (194)
|+....+++..
T Consensus 70 dl~~~~~~l~~ 80 (120)
T cd07252 70 ALDALAARLRA 80 (120)
T ss_pred HHHHHHHHHHH
Confidence 67677776653
No 146
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=76.55 E-value=21 Score=24.18 Aligned_cols=79 Identities=6% Similarity=0.024 Sum_probs=46.6
Q ss_pred cEEEEeeCCHHHHHHHHHh-CCCeEEccceecCccceEEEEEeCCCCCEEEEEecCCCCcCcCCCcchhhcccccccchh
Q 029385 83 NHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLPVVPLAGDAVRIRSCTSTVNCN 161 (194)
Q Consensus 83 ~hiaf~v~dl~~~~~~l~~-~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~~~p~~p~~~~~~~~~~~~~~~~~~ 161 (194)
.|+++.|.|+++..+...+ .|.++..... ..+ ....+...++..+.++...... .+......+...+ -|++
T Consensus 2 ~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~v---~di~ 73 (114)
T cd07247 2 VWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGG---DYAVFSTGGGAVGGLMKAPEPA-AGSPPGWLVYFAV---DDVD 73 (114)
T ss_pred EEEEeeCCCHHHHHHHHHhccCceeeeccC-CCC---ceEEEEeCCccEEEEecCCCCC-CCCCCeEEEEEEe---CCHH
Confidence 6999999999999999986 5988765432 111 3344554444556666543221 1112222344555 5677
Q ss_pred hhhhhhhh
Q 029385 162 FHQQQIQQ 169 (194)
Q Consensus 162 ~~~~~~~~ 169 (194)
...+++..
T Consensus 74 ~~~~~l~~ 81 (114)
T cd07247 74 AAAARVEA 81 (114)
T ss_pred HHHHHHHH
Confidence 77776553
No 147
>PRK10291 glyoxalase I; Provisional
Probab=75.56 E-value=20 Score=25.15 Aligned_cols=54 Identities=19% Similarity=0.242 Sum_probs=35.3
Q ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcce---EEEEe-CCcEEEEeecC
Q 029385 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDG---AWLFN-YGMGIHLLKSE 66 (194)
Q Consensus 12 ~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~---~~~~~-~g~~~~l~~~~ 66 (194)
.+++|++|.|.|++++.+-.++ .|.++........... .++.. .|..+++++..
T Consensus 64 ~~~~hlaf~V~d~~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~ 121 (129)
T PRK10291 64 TAYGHIALSVDNAAEACEKIRQ-NGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEK 121 (129)
T ss_pred CCeeEEEEEeCCHHHHHHHHHH-cCCccccCCcccCCCceEEEEEECCCCCEEEEEEcc
Confidence 3688999999999999999976 8988765432111121 22222 35667777654
No 148
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=75.31 E-value=12 Score=26.74 Aligned_cols=33 Identities=9% Similarity=0.187 Sum_probs=26.2
Q ss_pred cceeeeEEEEcCCHHHHHHHHHHc--cCCeEeeeC
Q 029385 11 LKSLNHISLVCRSVEASLDFYQNV--LGFFPIRRP 43 (194)
Q Consensus 11 i~~i~hv~l~v~Dle~s~~FY~~v--LG~~~~~~~ 43 (194)
..+++|+++.|.|+++..++++.+ .|.++....
T Consensus 60 ~~g~~hiaf~v~d~~~~~~~~~~l~~~G~~~~~~~ 94 (134)
T cd08360 60 MAGFHHAAFEVGDIDEVMLGGNHMLRAGYQTGWGP 94 (134)
T ss_pred CCcceEEEEEeCCHHHHHHHHHHHHHcCCccccCC
Confidence 367899999999999999877776 677665433
No 149
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=74.81 E-value=17 Score=25.14 Aligned_cols=78 Identities=9% Similarity=0.044 Sum_probs=45.6
Q ss_pred CccEEEEeeCCHHHHHHHHHh-CCCeEEccceecCccceEEEEEeCCCCCEEEEEecCCCCcCcCCCcchhhcccccccc
Q 029385 81 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLPVVPLAGDAVRIRSCTSTVN 159 (194)
Q Consensus 81 g~~hiaf~v~dl~~~~~~l~~-~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~~~p~~p~~~~~~~~~~~~~~~~ 159 (194)
++.|+.+.|.|++++.+...+ .|.+..... ++ ..++.- +|..+.+......+ +......+...+ ..-|
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~---~~----~~~~~~-~~~~~~l~~~~~~~--~~~~~~hi~f~v-~~~d 69 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRW---DK----GAYLEA-GDLWLCLSVDANVG--PAKDYTHYAFSV-SEED 69 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEec---CC----ceEEec-CCEEEEEecCCCCC--CCCCeeeEEEEe-CHHH
Confidence 468999999999999999885 798765432 11 123332 34444553322211 111222344455 3347
Q ss_pred hhhhhhhhhh
Q 029385 160 CNFHQQQIQQ 169 (194)
Q Consensus 160 ~~~~~~~~~~ 169 (194)
++.+.++++.
T Consensus 70 l~~~~~~l~~ 79 (121)
T cd07244 70 FASLKEKLRQ 79 (121)
T ss_pred HHHHHHHHHH
Confidence 8888888775
No 150
>PRK06724 hypothetical protein; Provisional
Probab=74.06 E-value=24 Score=25.22 Aligned_cols=76 Identities=11% Similarity=0.086 Sum_probs=41.6
Q ss_pred CCccEEEEeeCCHHHHHHHHHh----CCCeEEccceecCccceEEEEEeCCCCCEEEEEecCCCCcCcCCCcchhhcccc
Q 029385 80 PKDNHISFQCENMAIVERRLKE----MKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLPVVPLAGDAVRIRSCT 155 (194)
Q Consensus 80 ~g~~hiaf~v~dl~~~~~~l~~----~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~~~p~~p~~~~~~~~~~~~ 155 (194)
.++.||++.|.|+++..+...+ .|.+.........+ ...+++..+++. .+ +..+...+.+.+.
T Consensus 6 ~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~~~~g--~~~l~l~~~~~~---------~~--~~~g~~h~af~v~ 72 (128)
T PRK06724 6 AGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEVAYSTG--ESEIYFKEVDEE---------IV--RTLGPRHICYQAI 72 (128)
T ss_pred cccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeEeeeCC--CeeEEEecCCcc---------cc--CCCCceeEEEecC
Confidence 4689999999999998776665 45554321101011 123344433321 01 1112234556655
Q ss_pred cccchhhhhhhhh
Q 029385 156 STVNCNFHQQQIQ 168 (194)
Q Consensus 156 ~~~~~~~~~~~~~ 168 (194)
++-+++++.+++.
T Consensus 73 ~~~dvd~~~~~l~ 85 (128)
T PRK06724 73 NRKVVDEVAEFLS 85 (128)
T ss_pred ChHHHHHHHHHHH
Confidence 7778888888775
No 151
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=74.05 E-value=19 Score=24.81 Aligned_cols=77 Identities=10% Similarity=0.154 Sum_probs=46.1
Q ss_pred CccEEEEeeCCHHHHHHHHHh-CCCeEEccceecCccceEEEEEeC---CCCCEEEEEecCCCCcCcCCCcchhhccccc
Q 029385 81 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHD---PDGSMIEICNCDVLPVVPLAGDAVRIRSCTS 156 (194)
Q Consensus 81 g~~hiaf~v~dl~~~~~~l~~-~Gi~~~~~~~~~~g~~~~~~~~~D---PDG~~iEi~~~~~~p~~p~~~~~~~~~~~~~ 156 (194)
++.|+++.|.|+++..+...+ .|.++.... +. ...|+.- .++..+.+... +.+ ....+.+.+.+
T Consensus 4 ~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~---~~---~~~~~~~~~~~~~~~~~l~~~-~~~-----~~~hiaf~v~~ 71 (122)
T cd07265 4 RPGHVQLRVLDLEEAIKHYREVLGLDEVGRD---DQ---GRVYLKAWDEFDHHSIVLREA-DTA-----GLDFMGFKVLD 71 (122)
T ss_pred eEeEEEEEeCCHHHHHHHHHhccCCEeeeec---CC---ceEEEEccCCCcccEEEeccC-CCC-----CeeEEEEEeCC
Confidence 678999999999999999975 798876432 11 1234442 23445555321 111 12234455534
Q ss_pred ccchhhhhhhhhh
Q 029385 157 TVNCNFHQQQIQQ 169 (194)
Q Consensus 157 ~~~~~~~~~~~~~ 169 (194)
+-|++...++++.
T Consensus 72 ~~dv~~~~~~l~~ 84 (122)
T cd07265 72 DADLEKLEARLQA 84 (122)
T ss_pred HHHHHHHHHHHHH
Confidence 4577777777764
No 152
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=73.48 E-value=26 Score=25.97 Aligned_cols=28 Identities=4% Similarity=0.156 Sum_probs=24.2
Q ss_pred CccEEEEeeCCHHHHHHHHHh-CCCeEEc
Q 029385 81 KDNHISFQCENMAIVERRLKE-MKIDYVK 108 (194)
Q Consensus 81 g~~hiaf~v~dl~~~~~~l~~-~Gi~~~~ 108 (194)
++.|+++.|.|+++..+...+ .|.++..
T Consensus 3 ~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~ 31 (161)
T cd07256 3 RLDHFNLRVPDVDAGLAYYRDELGFRVSE 31 (161)
T ss_pred eEEEEEEecCCHHHHHHHHHhccCCEEEE
Confidence 578999999999999999886 7987653
No 153
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.46 E-value=17 Score=23.90 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=31.7
Q ss_pred HHHHHHHHHhCCCeEEccceecCc-cceEEEEEeCCCCCEE
Q 029385 92 MAIVERRLKEMKIDYVKSRVEEGG-INVDQLFFHDPDGSMI 131 (194)
Q Consensus 92 l~~~~~~l~~~Gi~~~~~~~~~~g-~~~~~~~~~DPDG~~i 131 (194)
+.++...|.++|+.+..+.....| .....||+.|.+|..+
T Consensus 15 L~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl 55 (75)
T cd04897 15 LFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTL 55 (75)
T ss_pred HHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCcc
Confidence 667788899999999887765443 3568999999999854
No 154
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=71.04 E-value=33 Score=24.09 Aligned_cols=52 Identities=12% Similarity=0.177 Sum_probs=33.4
Q ss_pred cEEEEeeCCHHHHHHHHHh-CCCeEEccceecCccceEEEEEeCC-CCCEEEEEec
Q 029385 83 NHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDP-DGSMIEICNC 136 (194)
Q Consensus 83 ~hiaf~v~dl~~~~~~l~~-~Gi~~~~~~~~~~g~~~~~~~~~DP-DG~~iEi~~~ 136 (194)
.||++.|.|+++..+...+ .|..+...... ++. ....|+... .+..++++..
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~-~~~-~~~~~~~~~~~~~~l~~~~~ 54 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGD-PGV-DAAAFLRCDEDHHDLALFPG 54 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEcc-CCc-eeEEEEEcCCCcceEEEEcC
Confidence 4899999999999998876 79887643211 111 134455543 3456777653
No 155
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=69.96 E-value=34 Score=23.72 Aligned_cols=77 Identities=13% Similarity=0.102 Sum_probs=47.5
Q ss_pred CCccEEEEeeCCHHHHHHHHHh-CCCeEEccceecCccceEEEEEeCCCCCEEEEEecCCCCcCcCCCcchhhccccccc
Q 029385 80 PKDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLPVVPLAGDAVRIRSCTSTV 158 (194)
Q Consensus 80 ~g~~hiaf~v~dl~~~~~~l~~-~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~~~p~~p~~~~~~~~~~~~~~~ 158 (194)
.+..|+++.|.|+++..+...+ .|.+..... + ...++...+|..+++...+. + .+ ...+.... ..-
T Consensus 3 ~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~----~---~~~~~~~~~~~~l~~~~~~~-~-~~---~~h~a~~v-~~~ 69 (123)
T cd08351 3 VTLNHTIVPARDREASAEFYAEILGLPWAKPF----G---PFAVVKLDNGVSLDFAQPDG-E-IP---PQHYAFLV-SEE 69 (123)
T ss_pred ceEeEEEEEcCCHHHHHHHHHHhcCCEeeecc----C---CEEEEEcCCCcEEEEecCCC-C-CC---cceEEEEe-CHH
Confidence 3568999999999999998874 598776421 1 22334445677787765321 1 11 12233334 335
Q ss_pred chhhhhhhhhh
Q 029385 159 NCNFHQQQIQQ 169 (194)
Q Consensus 159 ~~~~~~~~~~~ 169 (194)
|++.+.+++..
T Consensus 70 dl~~~~~~l~~ 80 (123)
T cd08351 70 EFDRIFARIRE 80 (123)
T ss_pred HHHHHHHHHHH
Confidence 67888888775
No 156
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=69.46 E-value=34 Score=23.54 Aligned_cols=76 Identities=7% Similarity=0.090 Sum_probs=46.9
Q ss_pred CccEEEEeeCCHHHHHHHHHh-CCCeEEccceecCccceEEEEEeC-C--CCCEEEEEecCCCCcCcCCCcchhhccccc
Q 029385 81 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHD-P--DGSMIEICNCDVLPVVPLAGDAVRIRSCTS 156 (194)
Q Consensus 81 g~~hiaf~v~dl~~~~~~l~~-~Gi~~~~~~~~~~g~~~~~~~~~D-P--DG~~iEi~~~~~~p~~p~~~~~~~~~~~~~ 156 (194)
++.|+++.|+|++++.+...+ .|.++.... + ...|+.- . ....+++.... . .....+.+...+
T Consensus 6 ~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~---~----~~~~l~~~~~~~~~~~~l~~~~---~---~~~~h~af~v~~ 72 (121)
T cd09013 6 HLAHVELLTPKPEESLWFFTDVLGLEETGRE---G----QSVYLRAWGDYEHHSLKLTESP---E---AGLGHIAWRASS 72 (121)
T ss_pred EeeEEEEEeCCHHHHHHHHHhCcCCEEEeec---C----CeEEEEeccCCCccEEEEeeCC---C---CceEEEEEEcCC
Confidence 678999999999999999986 498766432 1 2345542 2 34556664321 1 122234455545
Q ss_pred ccchhhhhhhhhh
Q 029385 157 TVNCNFHQQQIQQ 169 (194)
Q Consensus 157 ~~~~~~~~~~~~~ 169 (194)
+-+++...++++.
T Consensus 73 ~~~v~~~~~~l~~ 85 (121)
T cd09013 73 PEALERRVAALEA 85 (121)
T ss_pred HHHHHHHHHHHHH
Confidence 5677777777664
No 157
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=67.84 E-value=35 Score=23.16 Aligned_cols=76 Identities=9% Similarity=0.100 Sum_probs=45.2
Q ss_pred CccEEEEeeCCHHHHHHHHHh-CCCeEEccceecCccceEEEEEeCCCC--CEEEEEecCCCCcCcCCCcchhhcccccc
Q 029385 81 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPDG--SMIEICNCDVLPVVPLAGDAVRIRSCTST 157 (194)
Q Consensus 81 g~~hiaf~v~dl~~~~~~l~~-~Gi~~~~~~~~~~g~~~~~~~~~DPDG--~~iEi~~~~~~p~~p~~~~~~~~~~~~~~ 157 (194)
++.|+.|.|.|+++..+...+ .|.+..... . ...++...+. ..+.+... +.+ ....+.+.|.+.
T Consensus 3 ~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~v~~~ 69 (120)
T cd08362 3 ALRGVGLGVPDLAAAAAFYREVWGLSVVAED---D----GIVYLRATGSEHHILRLRRS-DRN-----RLDVVSFSVASR 69 (120)
T ss_pred eeeEEEEecCCHHHHHHHHHhCcCcEEEEec---C----CEEEEECCCCccEEEEeccC-CCC-----CCceEEEEeCCH
Confidence 678999999999999998886 688765322 1 2345554432 23333211 111 112355666444
Q ss_pred cchhhhhhhhhh
Q 029385 158 VNCNFHQQQIQQ 169 (194)
Q Consensus 158 ~~~~~~~~~~~~ 169 (194)
-+++.+.+++..
T Consensus 70 ~~l~~~~~~l~~ 81 (120)
T cd08362 70 ADVDALARQVAA 81 (120)
T ss_pred HHHHHHHHHHHH
Confidence 577777777664
No 158
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=67.83 E-value=27 Score=24.82 Aligned_cols=79 Identities=10% Similarity=0.122 Sum_probs=47.1
Q ss_pred ccEEEEeeCCHHHHHHHHHh-CCCeEEccceecCccceEEEEEeCCCCCEEEEEecCCCCcCcC-CCcchhhcccccccc
Q 029385 82 DNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLPVVPL-AGDAVRIRSCTSTVN 159 (194)
Q Consensus 82 ~~hiaf~v~dl~~~~~~l~~-~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~~~p~~p~-~~~~~~~~~~~~~~~ 159 (194)
++|+++.|+|+++..+...+ .|.++.... . ...|+.- .|..+++...+..+.... .....+.+.+ +.-|
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~---~----~~~~~~~-~~~~l~l~~~~~~~~~~~~~~~~hiaf~v-~~~d 71 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLG---E----KTAYFTI-GGTWLALNEEPDIPRNEIRQSYTHIAFTI-EDSE 71 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccC---C----ccceEee-CceEEEEEccCCCCcCCcCccceEEEEEe-cHHH
Confidence 46999999999999999886 588765421 1 1223433 467777765443222111 1112355555 2236
Q ss_pred hhhhhhhhhh
Q 029385 160 CNFHQQQIQQ 169 (194)
Q Consensus 160 ~~~~~~~~~~ 169 (194)
++.+.++++.
T Consensus 72 ld~~~~~l~~ 81 (131)
T cd08363 72 FDAFYTRLKE 81 (131)
T ss_pred HHHHHHHHHH
Confidence 8888888774
No 159
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=67.66 E-value=2.2 Score=25.20 Aligned_cols=30 Identities=10% Similarity=0.257 Sum_probs=23.9
Q ss_pred CCcccceeeeEEEEcCCHHHHHHHHHHccC
Q 029385 7 NPLCLKSLNHISLVCRSVEASLDFYQNVLG 36 (194)
Q Consensus 7 ~~~~i~~i~hv~l~v~Dle~s~~FY~~vLG 36 (194)
+-..+..++-.+++++++++..+||.+.|-
T Consensus 5 ~y~gigp~De~giP~~~vd~~kDWYktMFk 34 (47)
T PF02208_consen 5 HYEGIGPVDESGIPLSNVDRPKDWYKTMFK 34 (47)
T ss_pred cCCCcCccccCCCccccccchhHHHHHHHH
Confidence 334566677788899999999999998764
No 160
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=66.44 E-value=37 Score=22.84 Aligned_cols=76 Identities=5% Similarity=0.071 Sum_probs=46.1
Q ss_pred CccEEEEeeCCHHHHHHHHHh-CCCeEEccceecCccceEEEEEeCC-C-CCEEEEEecCCCCcCcCCCcchhhcccccc
Q 029385 81 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDP-D-GSMIEICNCDVLPVVPLAGDAVRIRSCTST 157 (194)
Q Consensus 81 g~~hiaf~v~dl~~~~~~l~~-~Gi~~~~~~~~~~g~~~~~~~~~DP-D-G~~iEi~~~~~~p~~p~~~~~~~~~~~~~~ 157 (194)
++.|+.|.|.|+++..+...+ .|.++.... + ...|+..+ + ...+.+..... .....+...+.+.
T Consensus 2 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~------~~~~h~~~~v~~~ 68 (117)
T cd07240 2 RIAYAELEVPDLERALEFYTDVLGLTVLDRD---A----GSVYLRCSEDDHHSLVLTEGDE------PGVDALGFEVASE 68 (117)
T ss_pred ceeEEEEecCCHHHHHHHHHhccCcEEEeec---C----CeEEEecCCCCcEEEEEEeCCC------CCceeEEEEcCCH
Confidence 468999999999999999997 799877533 1 23566655 3 33444443211 1122344555233
Q ss_pred cchhhhhhhhhh
Q 029385 158 VNCNFHQQQIQQ 169 (194)
Q Consensus 158 ~~~~~~~~~~~~ 169 (194)
-+++...+++..
T Consensus 69 ~~v~~~~~~l~~ 80 (117)
T cd07240 69 EDLEALAAHLEA 80 (117)
T ss_pred HHHHHHHHHHHH
Confidence 366667666654
No 161
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=57.19 E-value=17 Score=24.93 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=24.2
Q ss_pred CccEEEEeeCCHHHHHHHHHhCCCeEEc
Q 029385 81 KDNHISFQCENMAIVERRLKEMKIDYVK 108 (194)
Q Consensus 81 g~~hiaf~v~dl~~~~~~l~~~Gi~~~~ 108 (194)
++.|+.+.|+|++++.+...+.|.+...
T Consensus 3 ~l~hv~l~v~Dl~~s~~FY~~lGl~~~~ 30 (113)
T cd07267 3 DIAHVRFEHPDLDKAERFLTDFGLEVAA 30 (113)
T ss_pred EEEEEEEccCCHHHHHHHHHHcCCEEEE
Confidence 5679999999999999999888987654
No 162
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=57.16 E-value=45 Score=24.42 Aligned_cols=28 Identities=7% Similarity=0.068 Sum_probs=23.4
Q ss_pred ccEEEEeeCCHHHHHHHHH-hCCCeEEcc
Q 029385 82 DNHISFQCENMAIVERRLK-EMKIDYVKS 109 (194)
Q Consensus 82 ~~hiaf~v~dl~~~~~~l~-~~Gi~~~~~ 109 (194)
+.|+++.|+|+++..+..+ ..|.++...
T Consensus 2 i~Hv~l~V~Dle~a~~FY~~~LG~~~~~~ 30 (153)
T cd07257 2 LGHVVLEVPDFAASFDWYTETFGLKPSDV 30 (153)
T ss_pred ccEEEEecCCHHHHHHHHHHhcCCeEEee
Confidence 5799999999999999886 579887643
No 163
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=55.78 E-value=42 Score=24.32 Aligned_cols=29 Identities=14% Similarity=0.237 Sum_probs=24.6
Q ss_pred CccEEEEeeCCHHHHHHHHHh-CCCeEEcc
Q 029385 81 KDNHISFQCENMAIVERRLKE-MKIDYVKS 109 (194)
Q Consensus 81 g~~hiaf~v~dl~~~~~~l~~-~Gi~~~~~ 109 (194)
++.|+++.|.|+++..+..++ .|..+...
T Consensus 6 ~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~ 35 (143)
T cd07243 6 RLDHCLLTGEDIAETTRFFTDVLDFYLAER 35 (143)
T ss_pred eeCEEEEecCCHHHHHHHHHHhcCCEEEEE
Confidence 578999999999999999876 79886543
No 164
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=55.49 E-value=27 Score=25.29 Aligned_cols=85 Identities=12% Similarity=0.173 Sum_probs=51.2
Q ss_pred eeeEEEEcCCHHHHHHHHHHccCCeEeeeCC----CCCcceEE------EEeCCcEEEEeecCCCCCCCCCCCCCCCCcc
Q 029385 14 LNHISLVCRSVEASLDFYQNVLGFFPIRRPG----SFDFDGAW------LFNYGMGIHLLKSEEPDNLPKAGKNINPKDN 83 (194)
Q Consensus 14 i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~----~~~~~~~~------~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~ 83 (194)
++-+.+.|.+.+.+..-.++ -||.+....- ..+.++.. +-..+.++..+...-... .-.
T Consensus 42 FGIiRmvV~~~d~A~~~Lee-~gF~Vr~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek----------~KA 110 (142)
T COG4747 42 FGIIRMVVDRPDEAHSVLEE-AGFTVRETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK----------QKA 110 (142)
T ss_pred cceEEEEcCChHHHHHHHHH-CCcEEEeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC----------ceE
Confidence 45688899999999998887 7887654310 00111110 011223333332221111 112
Q ss_pred EEEEeeCCHHHHHHHHHhCCCeEEcc
Q 029385 84 HISFQCENMAIVERRLKEMKIDYVKS 109 (194)
Q Consensus 84 hiaf~v~dl~~~~~~l~~~Gi~~~~~ 109 (194)
-+-++|+|+++..+.|+++|+++...
T Consensus 111 lli~r~ed~d~~~~aLed~gi~~~~~ 136 (142)
T COG4747 111 LLIVRVEDIDRAIKALEDAGIKLIGM 136 (142)
T ss_pred EEEEEhhHHHHHHHHHHHcCCeecCh
Confidence 37889999999999999999998754
No 165
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=55.08 E-value=65 Score=21.93 Aligned_cols=76 Identities=11% Similarity=0.158 Sum_probs=45.3
Q ss_pred CccEEEEeeCCHHHHHHHHHh-CCCeEEccceecCccceEEEEEeCC---CCCEEEEEecCCCCcCcCCCcchhhccccc
Q 029385 81 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDP---DGSMIEICNCDVLPVVPLAGDAVRIRSCTS 156 (194)
Q Consensus 81 g~~hiaf~v~dl~~~~~~l~~-~Gi~~~~~~~~~~g~~~~~~~~~DP---DG~~iEi~~~~~~p~~p~~~~~~~~~~~~~ 156 (194)
++.|+.+.|+|+++..+...+ .|.++.... . ...|++.. ....+.+... +. ...+.+...+.+
T Consensus 4 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~---~~---~~~~hi~~~v~~ 70 (121)
T cd07266 4 RLGHVELRVTDLEKSREFYVDVLGLVETEED---D----DRIYLRGLEEFIHHSLVLTKA---PV---AGLGHIAFRVRS 70 (121)
T ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEeccC---C----CeEEEEecCCCceEEEEEeeC---CC---CceeEEEEECCC
Confidence 578999999999999999986 798876532 1 23344432 2233333322 11 122334444534
Q ss_pred ccchhhhhhhhhh
Q 029385 157 TVNCNFHQQQIQQ 169 (194)
Q Consensus 157 ~~~~~~~~~~~~~ 169 (194)
.-|++.+.++++.
T Consensus 71 ~~dv~~~~~~l~~ 83 (121)
T cd07266 71 EEDLDKAEAFFQE 83 (121)
T ss_pred HHHHHHHHHHHHH
Confidence 4677777777664
No 166
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=54.45 E-value=26 Score=21.18 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=22.5
Q ss_pred CccEEEEeeCCHHHHHHHHHhCCCeE
Q 029385 81 KDNHISFQCENMAIVERRLKEMKIDY 106 (194)
Q Consensus 81 g~~hiaf~v~dl~~~~~~l~~~Gi~~ 106 (194)
+...+.|.+++.+.+.+.|+++|+.+
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 44578999999999999999999865
No 167
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=54.05 E-value=62 Score=22.29 Aligned_cols=82 Identities=7% Similarity=0.086 Sum_probs=45.3
Q ss_pred cEEEEeeCCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEecCCC------CcC-cC-CCcchhhccc
Q 029385 83 NHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVL------PVV-PL-AGDAVRIRSC 154 (194)
Q Consensus 83 ~hiaf~v~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~~~------p~~-p~-~~~~~~~~~~ 154 (194)
.++++.|+|+++..+-.+..|.+..... .... . .++.-.++..+.+...... +.. +- .....+...+
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~lGf~~~~~~-~~~~---~-~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~f~v 76 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTALGFEFNPQF-SDEK---A-ACMVISDNIFVMLLTEDFFQTFTPKPIADTKKSTEVLISLSA 76 (124)
T ss_pred EEEEeecCCHHHHHHHHHHCCCEEcccc-CCCC---e-EEEEECCceEEEEEcHHHHhhccCCCcccCCCCCeEEEEEeC
Confidence 4689999999999999988888765321 1111 1 2222235667777653211 100 11 1112344556
Q ss_pred ccccchhhhhhhhhh
Q 029385 155 TSTVNCNFHQQQIQQ 169 (194)
Q Consensus 155 ~~~~~~~~~~~~~~~ 169 (194)
.++-+++.+.+++..
T Consensus 77 ~~~~~vd~~~~~l~~ 91 (124)
T cd09012 77 DSREEVDELVEKALA 91 (124)
T ss_pred CCHHHHHHHHHHHHH
Confidence 344467777777653
No 168
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=53.52 E-value=33 Score=28.82 Aligned_cols=30 Identities=23% Similarity=0.137 Sum_probs=22.9
Q ss_pred CCCCccEEEEee------CCHHHHHHHHHhCCCeEE
Q 029385 78 INPKDNHISFQC------ENMAIVERRLKEMKIDYV 107 (194)
Q Consensus 78 ~~~g~~hiaf~v------~dl~~~~~~l~~~Gi~~~ 107 (194)
.+...||+.+.| .||+++.+.|+++|++..
T Consensus 181 ~G~~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 181 HGYHINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp HTCS-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred cccccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 356889999999 999999999999999987
No 169
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=52.55 E-value=29 Score=24.57 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEE
Q 029385 90 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIE 132 (194)
Q Consensus 90 ~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iE 132 (194)
.|++.+.+.|++.|+++.... -+|...+.++|.-.+|..+-
T Consensus 64 rNv~~a~~~L~~~gi~I~a~d--vGG~~~R~v~f~~~tG~v~v 104 (114)
T PF03975_consen 64 RNVEAARELLAEEGIPIVAED--VGGNFGRKVRFDPATGEVWV 104 (114)
T ss_dssp HHHHHHHHHHHHTT--EEEEE--E-SSS-EEEEEETTTTEEEE
T ss_pred HHHHHHHHHHHHCCCcEEEee--CCCCCCcEEEEEcCCCEEEE
Confidence 389999999999999998743 35556688888877776653
No 170
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.36 E-value=47 Score=26.75 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHccCCeEeeeC
Q 029385 23 SVEASLDFYQNVLGFFPIRRP 43 (194)
Q Consensus 23 Dle~s~~FY~~vLG~~~~~~~ 43 (194)
|.++++.||.+.||+++..-.
T Consensus 146 ~~~e~a~wy~dyLGleie~~h 166 (246)
T KOG4657|consen 146 DIHEAASWYNDYLGLEIEAGH 166 (246)
T ss_pred ccHHHHHHHHHhcCceeeecc
Confidence 677889999999999987754
No 171
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=47.50 E-value=30 Score=22.94 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=26.9
Q ss_pred cceeeeEEEEcCCHHHHHHHHHHccCCeEeeeC
Q 029385 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRP 43 (194)
Q Consensus 11 i~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~ 43 (194)
-.+..|+.+.|.|+++..+...+ +|.++...+
T Consensus 54 ~~~~~~~~~~v~dv~~~~~~l~~-~G~~~~~~~ 85 (108)
T PF12681_consen 54 PGGGFHLCFEVEDVDALYERLKE-LGAEIVTEP 85 (108)
T ss_dssp SSSEEEEEEEESHHHHHHHHHHH-TTSEEEEEE
T ss_pred CCceeEEEEEEcCHHHHHHHHHH-CCCeEeeCC
Confidence 44667999999999999999987 899877654
No 172
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=43.42 E-value=47 Score=25.15 Aligned_cols=40 Identities=23% Similarity=0.455 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEE
Q 029385 90 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMI 131 (194)
Q Consensus 90 ~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~i 131 (194)
.|++.+.+.|++.|+++.... -+|...+.++|.--+|..+
T Consensus 105 rNi~~a~~~L~~~gI~i~a~d--vGG~~gR~i~f~~~tG~v~ 144 (159)
T PRK13495 105 RNVEAVKKHLKDFGIKLVAED--TGGNRARSIEYNIETGKLL 144 (159)
T ss_pred HHHHHHHHHHHHcCCcEEEEe--CCCCCCcEEEEECCCCEEE
Confidence 399999999999999998743 3555568888877777664
No 173
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.51 E-value=92 Score=20.06 Aligned_cols=38 Identities=21% Similarity=0.314 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCCeEEcccee--cCccceEEEEEeCCCCC
Q 029385 92 MAIVERRLKEMKIDYVKSRVE--EGGINVDQLFFHDPDGS 129 (194)
Q Consensus 92 l~~~~~~l~~~Gi~~~~~~~~--~~g~~~~~~~~~DPDG~ 129 (194)
+..+...+.+.|+.+...... .++.....||+.|++|.
T Consensus 14 fa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~ 53 (76)
T cd04927 14 LHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL 53 (76)
T ss_pred HHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC
Confidence 667778889999999987654 34555688888888776
No 174
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.21 E-value=60 Score=20.07 Aligned_cols=28 Identities=11% Similarity=0.197 Sum_probs=21.6
Q ss_pred ccEEEEeeC--CHHHHHHHHHhCCCeEEcc
Q 029385 82 DNHISFQCE--NMAIVERRLKEMKIDYVKS 109 (194)
Q Consensus 82 ~~hiaf~v~--dl~~~~~~l~~~Gi~~~~~ 109 (194)
...+.|.++ +.+.+.+.|++.|+++..+
T Consensus 42 ~~~v~i~v~~~~~~~~~~~L~~~G~~v~~~ 71 (72)
T cd04883 42 NKILVFRVQTMNPRPIIEDLRRAGYEVLWP 71 (72)
T ss_pred eEEEEEEEecCCHHHHHHHHHHCCCeeeCC
Confidence 334666665 8889999999999988764
No 175
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=41.80 E-value=52 Score=24.98 Aligned_cols=40 Identities=28% Similarity=0.467 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEE
Q 029385 90 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMI 131 (194)
Q Consensus 90 ~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~i 131 (194)
.|++.+.+.|++.|+++.... -+|...+.++|.--+|..+
T Consensus 112 rNv~~a~~~L~~~gI~i~a~d--vGG~~gR~i~f~~~tG~v~ 151 (162)
T PRK13490 112 RNGKAVKKKLKELSIPILAED--IGGNKGRTMIFDTSDGKVY 151 (162)
T ss_pred HHHHHHHHHHHHcCCcEEEEE--CCCCCCcEEEEECCCCEEE
Confidence 399999999999999988743 3555568888877777654
No 176
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=40.98 E-value=85 Score=21.19 Aligned_cols=27 Identities=11% Similarity=0.105 Sum_probs=23.0
Q ss_pred eEEEEcCCHHHHHHHHHHccCCeEeeeC
Q 029385 16 HISLVCRSVEASLDFYQNVLGFFPIRRP 43 (194)
Q Consensus 16 hv~l~v~Dle~s~~FY~~vLG~~~~~~~ 43 (194)
|+.+.|.|+++..+...+ .|.++....
T Consensus 69 ~~~~~v~did~~~~~l~~-~G~~~~~~~ 95 (119)
T cd08359 69 ILNFEVDDVDAEYERLKA-EGLPIVLPL 95 (119)
T ss_pred EEEEEECCHHHHHHHHHh-cCCCeeecc
Confidence 899999999999999987 788766543
No 177
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=40.92 E-value=54 Score=25.03 Aligned_cols=41 Identities=10% Similarity=0.085 Sum_probs=31.3
Q ss_pred eCCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEE
Q 029385 89 CENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMI 131 (194)
Q Consensus 89 v~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~i 131 (194)
-.|++.+.+.|++.|+++.... .+|...+.++|.--+|..+
T Consensus 114 ~rNi~~a~~~L~~~gi~i~a~D--vGG~~gR~i~f~~~tG~v~ 154 (167)
T PRK13498 114 DKNIHAALALAEQNGLHLKAQD--LGSTGHRSIIFDLWNGNVW 154 (167)
T ss_pred HHHHHHHHHHHHHCCCcEEEEe--CCCCCCcEEEEECCCCEEE
Confidence 3499999999999999998743 3555558888877777654
No 178
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=40.19 E-value=45 Score=24.23 Aligned_cols=34 Identities=6% Similarity=0.138 Sum_probs=23.7
Q ss_pred ccceeeeEEEEcCCHHHHHHHHHHc--cCCeEeeeC
Q 029385 10 CLKSLNHISLVCRSVEASLDFYQNV--LGFFPIRRP 43 (194)
Q Consensus 10 ~i~~i~hv~l~v~Dle~s~~FY~~v--LG~~~~~~~ 43 (194)
.-.+++|+++.|.|.+...++++.+ .|.++...+
T Consensus 53 ~~~gl~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p 88 (141)
T cd07258 53 SSSHFHHVNFMVTDIDDIGKALYRIKAHDVKVVFGP 88 (141)
T ss_pred CCCceEEEEEECCCHHHHHHHHHHHHHCCCcEEeCC
Confidence 3468999999999887665555553 677665443
No 179
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.65 E-value=1.6e+02 Score=22.07 Aligned_cols=94 Identities=16% Similarity=0.123 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHccCCeEee---eCC-C-CCc-ceE----EEEeCCcEEEEeecCCCCCCCCCCCCCCCCccEEEEeeC-
Q 029385 22 RSVEASLDFYQNVLGFFPIR---RPG-S-FDF-DGA----WLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCE- 90 (194)
Q Consensus 22 ~Dle~s~~FY~~vLG~~~~~---~~~-~-~~~-~~~----~~~~~g~~~~l~~~~~~~~~~~~~~~~~~g~~hiaf~v~- 90 (194)
.+.+++.+||.++|-=.-+. +.+ . .+. .+. -+...|.....+......+.+. ..-++|.+.
T Consensus 14 ~~AeeA~~fY~s~FpdS~i~~i~r~p~~~~~g~~G~Vl~a~F~l~g~~f~~ld~g~~~~f~f--------neA~S~~v~~ 85 (151)
T COG3865 14 GNAEEAMNFYLSTFPDSKIIGITRYPEGEPGGKEGKVLVAEFTLNGQSFMALDGGPNTSFKF--------NEAFSFQVAC 85 (151)
T ss_pred CcHHHHHHHHHHhCCcceeeeeeecCCCCCCCCCccEEEEEEEECCeEEEEEcCCCCcCCCc--------CccEEEEEEc
Confidence 78999999999988632222 111 0 100 111 1122233333333221111111 112566654
Q ss_pred ----CHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEE
Q 029385 91 ----NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEIC 134 (194)
Q Consensus 91 ----dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~ 134 (194)
.+|++...|.+.|-+. . ...|+.|--|.-|.|.
T Consensus 86 ~~q~E~Drlwnal~~~g~e~-------~----~cgW~kDKfGVSWQi~ 122 (151)
T COG3865 86 DDQEEIDRLWNALSDNGGEA-------E----ACGWLKDKFGVSWQIV 122 (151)
T ss_pred CCHHHHHHHHHHHhccCcch-------h----cceeEecccCcEEEEc
Confidence 5888888888887521 1 4569999999999997
No 180
>COG3102 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.46 E-value=1.8e+02 Score=22.47 Aligned_cols=77 Identities=13% Similarity=0.097 Sum_probs=44.1
Q ss_pred ccceeeeEEEEcCCHHHHHHHHHHccCCeEeeeCCCCCcceEEEEeC-------CcEEEEeecCCCCCCCCCCCCCCCCc
Q 029385 10 CLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAWLFNY-------GMGIHLLKSEEPDNLPKAGKNINPKD 82 (194)
Q Consensus 10 ~i~~i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~~~-------g~~~~l~~~~~~~~~~~~~~~~~~g~ 82 (194)
.-..++|++|.|.+..-+..|-...+-.-..-...-....-.+++.. +-.+.+++...|.... ..-.|.
T Consensus 36 t~~~~DHIaLRvh~~qtAk~wr~~~lqcG~~lS~n~iNGRpI~li~l~~Pl~v~~w~id~iELP~P~~K~----YP~egW 111 (185)
T COG3102 36 TQYTADHIALRVHQEQTAKRWRRGLLQCGELLSENLINGRPICLIKLHQPLQVAHWQIDIIELPYPKNKR----YPHEGW 111 (185)
T ss_pred cccccceeEEEeCcHHHHHHHHHHHHHHHHHhhhhhcCCceEEEEEcCCcceecceEEEEEEccCCcCCC----CCCcCc
Confidence 34568999999998877777655433321111100011122333322 2456777777665522 445789
Q ss_pred cEEEEeeC
Q 029385 83 NHISFQCE 90 (194)
Q Consensus 83 ~hiaf~v~ 90 (194)
-||-|..+
T Consensus 112 EHIEiVlP 119 (185)
T COG3102 112 EHIEIVLP 119 (185)
T ss_pred eeEEEEcC
Confidence 99999998
No 181
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=39.35 E-value=61 Score=24.48 Aligned_cols=40 Identities=25% Similarity=0.322 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEE
Q 029385 90 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMI 131 (194)
Q Consensus 90 ~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~i 131 (194)
.|++.+.+.|++.|+++.... -+|...+.++|.--+|..+
T Consensus 107 rNi~~a~~~L~~~gi~i~a~d--vGG~~gR~i~f~~~tG~v~ 146 (157)
T PRK13488 107 RNIESAKETLKKLGIRIVAED--VGGDYGRTVKFDLKTGKVI 146 (157)
T ss_pred HHHHHHHHHHHHCCCcEEEEE--cCCCCCcEEEEECCCCEEE
Confidence 499999999999999998743 3555558888877777653
No 182
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=39.32 E-value=61 Score=24.70 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEE
Q 029385 90 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMI 131 (194)
Q Consensus 90 ~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~i 131 (194)
.|++.+.+.|++.||++.... -+|...+.++|..-+|..+
T Consensus 114 rNv~~a~~~L~~~gI~i~a~D--vGG~~gR~i~f~~~tG~v~ 153 (163)
T PRK13494 114 ENSEFAVNTLNKYGIPILAKD--FDQSKSRKIFVFPENFKVI 153 (163)
T ss_pred HHHHHHHHHHHHcCCcEEEEe--CCCCCCcEEEEECCCCEEE
Confidence 399999999999999998743 3555568888877777654
No 183
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=37.87 E-value=67 Score=25.00 Aligned_cols=40 Identities=25% Similarity=0.273 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEE
Q 029385 90 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMI 131 (194)
Q Consensus 90 ~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~i 131 (194)
.|++.+.+.|++.||++.... .+|...+.++|..-+|..+
T Consensus 112 rNi~~a~~~L~~~gI~i~a~D--vGG~~gR~v~f~~~tG~v~ 151 (184)
T PRK13497 112 QNAAFAMQFLRDEGIPVVGSS--TGGEHGRKLEYWPVSGRAR 151 (184)
T ss_pred HHHHHHHHHHHHcCCcEEEEe--CCCCCCcEEEEECCCCeEE
Confidence 399999999999999998743 3555568888888777763
No 184
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional
Probab=36.93 E-value=67 Score=25.34 Aligned_cols=42 Identities=21% Similarity=0.340 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEE
Q 029385 90 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEI 133 (194)
Q Consensus 90 ~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi 133 (194)
.|++.+.+.|++.||++.... -+|...+.++|.--+|..+--
T Consensus 115 rNie~a~~~L~~~GI~ivaeD--vGG~~gRkI~f~~~tG~v~vk 156 (199)
T PRK13491 115 ANAAFARRYLRDEGIRCTAHS--LGGNRARRIRFWPKTGRVQQM 156 (199)
T ss_pred HHHHHHHHHHHHcCCcEEEEe--CCCCCCcEEEEECCCCEEEEE
Confidence 389999999999999998743 355556888888888877543
No 185
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=36.63 E-value=1.4e+02 Score=20.35 Aligned_cols=73 Identities=4% Similarity=-0.009 Sum_probs=44.2
Q ss_pred EEEeeCCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEecCCCCcCcCCCcchhhcccccccchhhhh
Q 029385 85 ISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLPVVPLAGDAVRIRSCTSTVNCNFHQ 164 (194)
Q Consensus 85 iaf~v~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~ 164 (194)
..+.|.|+++..+-..+.|.+..... .. ...++. .+|..++++..+.. .|......+...+ -|++...
T Consensus 6 ~~l~v~Dl~~s~~FY~~lG~~~~~~~---~~---~~~~~~-~~~~~l~l~~~~~~--~~~~~~~~~~~~v---~dvd~~~ 73 (120)
T cd08350 6 PNLPSRDLDATEAFYARLGFSVGYRQ---AA---GYMILR-RGDLELHFFAHPDL--DPATSPFGCCLRL---PDVAALH 73 (120)
T ss_pred ceeEcCCHHHHHHHHHHcCCEEEecC---CC---CEEEEE-cCCEEEEEEecCcC--CCCCCcceEEEEe---CCHHHHH
Confidence 57889999999998877998876433 11 123344 34567888765422 1221122233444 5788888
Q ss_pred hhhhh
Q 029385 165 QQIQQ 169 (194)
Q Consensus 165 ~~~~~ 169 (194)
+++..
T Consensus 74 ~~l~~ 78 (120)
T cd08350 74 AEFRA 78 (120)
T ss_pred HHHHH
Confidence 88764
No 186
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=35.84 E-value=68 Score=23.25 Aligned_cols=50 Identities=14% Similarity=0.170 Sum_probs=32.9
Q ss_pred CCccEEEEeeCCHHHHHHHHHh-CCCeEEccceecCccceEEEEEeCC-CCCEEEEEe
Q 029385 80 PKDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDP-DGSMIEICN 135 (194)
Q Consensus 80 ~g~~hiaf~v~dl~~~~~~l~~-~Gi~~~~~~~~~~g~~~~~~~~~DP-DG~~iEi~~ 135 (194)
.++.|+.+.|+|+++..+..++ .|.++.... .. ...|+.-. .+..+.+..
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~---~~---~~~~l~~~~~~~~~~l~~ 54 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWL---GD---QMAFLRCNSDHHSIAIAR 54 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEee---CC---eEEEEECCCCcceEEEcc
Confidence 4678999999999999999864 688765321 11 23455443 345566643
No 187
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=35.60 E-value=69 Score=25.53 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=30.8
Q ss_pred CHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEE
Q 029385 91 NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIE 132 (194)
Q Consensus 91 dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iE 132 (194)
|++.+.+.|++.||++.... -+|...+.++|..-+|..+-
T Consensus 140 Ni~~a~~~L~~~gI~Iva~D--vGG~~gRki~f~~~tG~v~v 179 (213)
T PRK13493 140 NVEFVLEYAKREKLNVVAQD--LGGAQPRKLLFDPQTGQAWV 179 (213)
T ss_pred HHHHHHHHHHHcCCcEEEEe--CCCCCCcEEEEECCCCEEEE
Confidence 89999999999999998743 35555688888776765543
No 188
>COG5301 Phage-related tail fibre protein [General function prediction only]
Probab=35.59 E-value=40 Score=30.22 Aligned_cols=37 Identities=24% Similarity=0.444 Sum_probs=30.8
Q ss_pred eecCccceEEEEEeCCCCCEEEEEecCCCCcCcCCCcc
Q 029385 111 VEEGGINVDQLFFHDPDGSMIEICNCDVLPVVPLAGDA 148 (194)
Q Consensus 111 ~~~~g~~~~~~~~~DPDG~~iEi~~~~~~p~~p~~~~~ 148 (194)
.+.+||..|.+-+.|.||-+|-+-.|++ .+.|...+|
T Consensus 81 etvGGwwiREvGlfDadG~liavgncPe-SYKpqm~eG 117 (587)
T COG5301 81 ETVGGWWIREVGLFDADGKLIAVGNCPE-SYKPQMEEG 117 (587)
T ss_pred ccccceEEEEeeeecCCCCEEEEccCCc-cccccccCC
Confidence 3558888999999999999999999976 666766665
No 189
>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional
Probab=34.39 E-value=78 Score=25.00 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEE
Q 029385 90 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMI 131 (194)
Q Consensus 90 ~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~i 131 (194)
.|++.+.+.|++.||++.... -+|...+.++|..-+|..+
T Consensus 127 rNi~~a~~~L~~~gI~iva~D--vGG~~gR~v~f~~~tG~v~ 166 (201)
T PRK13487 127 RNAEFVRDYLQTERIPIVAED--LLDIYPRKVYFFPTTGKVL 166 (201)
T ss_pred HHHHHHHHHHHHcCCcEEEEE--CCCCCCcEEEEECCCCEEE
Confidence 399999999999999998743 3555568888877777653
No 190
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.05 E-value=69 Score=21.09 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=22.2
Q ss_pred cEEEEeeCC----HHHHHHHHHhCCCeEEc
Q 029385 83 NHISFQCEN----MAIVERRLKEMKIDYVK 108 (194)
Q Consensus 83 ~hiaf~v~d----l~~~~~~l~~~Gi~~~~ 108 (194)
..+.++|++ ++.+.+.|++.|+.+..
T Consensus 42 v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~ 71 (85)
T cd04906 42 IFVGVSVANGAEELAELLEDLKSAGYEVVD 71 (85)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHCCCCeEE
Confidence 457788888 99999999999998765
No 191
>PF13225 DUF4033: Domain of unknown function (DUF4033)
Probab=33.33 E-value=60 Score=22.01 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=23.1
Q ss_pred HHHHHHHccCCeEeeeCCCCCcceEEEEe
Q 029385 27 SLDFYQNVLGFFPIRRPGSFDFDGAWLFN 55 (194)
Q Consensus 27 s~~FY~~vLG~~~~~~~~~~~~~~~~~~~ 55 (194)
+.+|+++-||+.+.-.+...++...+.++
T Consensus 49 tQ~Ff~~~~Glpl~M~PNfed~SC~~~FG 77 (86)
T PF13225_consen 49 TQTFFKEEFGLPLTMEPNFEDFSCQMIFG 77 (86)
T ss_pred hHHHHHhccCCceEecCCCcCcEEEEEcC
Confidence 56899999999999988776666666554
No 192
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.72 E-value=1.3e+02 Score=18.92 Aligned_cols=39 Identities=23% Similarity=0.483 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCeEEccceec--CccceEEEEEeCCCCCE
Q 029385 92 MAIVERRLKEMKIDYVKSRVEE--GGINVDQLFFHDPDGSM 130 (194)
Q Consensus 92 l~~~~~~l~~~Gi~~~~~~~~~--~g~~~~~~~~~DPDG~~ 130 (194)
+..+..-+..+|+.+....... ++.....||+.|++|..
T Consensus 15 l~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~ 55 (73)
T cd04900 15 FARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEP 55 (73)
T ss_pred HHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCC
Confidence 5667778889999998866432 34455777888887764
No 193
>COG1871 CheD Chemotaxis protein; stimulates methylation of MCP proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=32.65 E-value=91 Score=23.77 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEE
Q 029385 90 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIE 132 (194)
Q Consensus 90 ~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iE 132 (194)
.|.+.+.+.|++.||++.... .+|...|.++|..-+|.++-
T Consensus 114 rNv~~~~~~L~~~~IpilaeD--~Gg~~gR~i~F~p~tG~v~v 154 (164)
T COG1871 114 RNVEFAKEFLKDEGIPILAED--TGGDSGRTIEFNPSTGRVRV 154 (164)
T ss_pred HHHHHHHHHHHHcCCcEEEhh--hCCCCCcEEEEecCCCcEEE
Confidence 489999999999999998744 24444588888877777653
No 194
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=31.88 E-value=1.6e+02 Score=19.71 Aligned_cols=80 Identities=6% Similarity=0.042 Sum_probs=46.0
Q ss_pred cEEEEeeCCHHHHHHHHH-hCCCeEEccceecCccceEEEEEeCCCCCEEEEEecCCCC-------cCcCCCcchhhccc
Q 029385 83 NHISFQCENMAIVERRLK-EMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLP-------VVPLAGDAVRIRSC 154 (194)
Q Consensus 83 ~hiaf~v~dl~~~~~~l~-~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~~~p-------~~p~~~~~~~~~~~ 154 (194)
.|+++.|.|+++..+..+ ..|.++.... .+ ...++.-.++..+.+....... ..+......+....
T Consensus 2 ~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~---~~---~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 75 (122)
T cd08354 2 LETALYVDDLEAAEAFYEDVLGLELMLKE---DR---RLAFFWVGGRGMLLLFDPGATSTPGGEIPPHGGSGPGHFAFAI 75 (122)
T ss_pred eEEEEEeCCHHHHHHHHHhccCCEEeecC---CC---ceEEEEcCCCcEEEEEecCCcccccCCCCCCCCCCccEEEEEc
Confidence 478999999999999997 5698876531 12 2345555555667666543211 01111112233333
Q ss_pred ccccchhhhhhhhhh
Q 029385 155 TSTVNCNFHQQQIQQ 169 (194)
Q Consensus 155 ~~~~~~~~~~~~~~~ 169 (194)
.+ -|++.+.+++..
T Consensus 76 ~~-~dl~~~~~~l~~ 89 (122)
T cd08354 76 PA-EELAEWEAHLEA 89 (122)
T ss_pred CH-HHHHHHHHHHHh
Confidence 12 467788888764
No 195
>PRK13489 chemoreceptor glutamine deamidase CheD; Provisional
Probab=31.14 E-value=92 Score=25.22 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=30.9
Q ss_pred CHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEE
Q 029385 91 NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIE 132 (194)
Q Consensus 91 dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iE 132 (194)
|++.+.+.|++.||++.... -+|...+.++|..-+|..+-
T Consensus 126 Nieaa~~~L~~~gI~IvaeD--vGG~~gRkV~f~~~TG~v~V 165 (233)
T PRK13489 126 NADFVRRYLALERIRITAED--LQGVHPRKVAFMPRTGRAMV 165 (233)
T ss_pred HHHHHHHHHHHcCCcEEEEe--CCCCCCcEEEEECCCCEEEE
Confidence 89999999999999998743 35555588888777776543
No 196
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=30.82 E-value=1.6e+02 Score=19.51 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=24.8
Q ss_pred eeeEEEEcCCHHHHHHHHHHccCCeEeeeCC
Q 029385 14 LNHISLVCRSVEASLDFYQNVLGFFPIRRPG 44 (194)
Q Consensus 14 i~hv~l~v~Dle~s~~FY~~vLG~~~~~~~~ 44 (194)
..|+.+.|.|++++.+-+.+ .|.++...+.
T Consensus 58 ~~~i~~~v~d~~~~~~~l~~-~G~~~~~~~~ 87 (112)
T cd07238 58 VPDLSIEVDDVDAALARAVA-AGFAIVYGPT 87 (112)
T ss_pred CCEEEEEeCCHHHHHHHHHh-cCCeEecCCc
Confidence 45999999999999998876 8988776543
No 197
>PRK03467 hypothetical protein; Provisional
Probab=30.33 E-value=1.8e+02 Score=21.73 Aligned_cols=49 Identities=8% Similarity=0.088 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEecCC
Q 029385 90 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDV 138 (194)
Q Consensus 90 ~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~~ 138 (194)
+++..+.+.|+++-+-..-.....+.+..-.||..|+++..+-+.+.+.
T Consensus 5 ~~~~~I~~fl~~~hvltLa~~~~~~~w~A~cFY~fd~~~~~l~~~S~~~ 53 (144)
T PRK03467 5 DTLTAISRWLAKQHVVTLCVGQEGELWCANCFYVFDAQKVAFYLLTEEK 53 (144)
T ss_pred hHHHHHHHHHHhCcEEEEEEEcCCCcceEEEEEEEcCCCeEEEEEcCCC
Confidence 4577788888888766554333334455578888999999999998764
No 198
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=29.19 E-value=1.8e+02 Score=19.55 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=23.2
Q ss_pred eeEEEEcCCHHHHHHHHHHccCCeEeeeC
Q 029385 15 NHISLVCRSVEASLDFYQNVLGFFPIRRP 43 (194)
Q Consensus 15 ~hv~l~v~Dle~s~~FY~~vLG~~~~~~~ 43 (194)
.|+.|.|.|++++.+...+ .|.++....
T Consensus 73 ~~~~~~v~di~~~~~~l~~-~G~~~~~~~ 100 (125)
T cd07264 73 FEIAFVTDDVAAAFARAVE-AGAVLVSEP 100 (125)
T ss_pred EEEEEEcCCHHHHHHHHHH-cCCEeccCC
Confidence 4799999999999998876 788876554
No 199
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=29.17 E-value=2.2e+02 Score=20.41 Aligned_cols=89 Identities=9% Similarity=-0.009 Sum_probs=48.4
Q ss_pred CCCCCccEEEEeeCCHHHHHHHHHh-CCCeEEccceecCccceEEEEEeCCC---CCEEEEEecCCCCcCc-CCCcchhh
Q 029385 77 NINPKDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPD---GSMIEICNCDVLPVVP-LAGDAVRI 151 (194)
Q Consensus 77 ~~~~g~~hiaf~v~dl~~~~~~l~~-~Gi~~~~~~~~~~g~~~~~~~~~DPD---G~~iEi~~~~~~p~~p-~~~~~~~~ 151 (194)
....++.|+++.|.|+++..+...+ .|.++........+ .....++.-.+ ...+++.........+ -.....+.
T Consensus 13 ~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~hi~ 91 (150)
T TIGR00068 13 TKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEM-KFSLAFLGYGDETSAAVIELTHNWGTEKYDLGNGFGHIA 91 (150)
T ss_pred cCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCC-ceEEEEecCCCCCCccEEEEeecCCCCcccCCCceeEEE
Confidence 4556889999999999999999985 79887543211111 11222332122 2456665432111111 11112344
Q ss_pred cccccccchhhhhhhhhh
Q 029385 152 RSCTSTVNCNFHQQQIQQ 169 (194)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~ 169 (194)
+.+ -|++.+.+++..
T Consensus 92 f~v---~dld~~~~~l~~ 106 (150)
T TIGR00068 92 IGV---DDVYKACERVRA 106 (150)
T ss_pred Eec---CCHHHHHHHHHH
Confidence 555 467777777653
No 200
>PHA02754 hypothetical protein; Provisional
Probab=28.83 E-value=1.5e+02 Score=18.52 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCCCeEEcccee-cCccceEEEEEeCCCCCEEEEEec
Q 029385 92 MAIVERRLKEMKIDYVKSRVE-EGGINVDQLFFHDPDGSMIEICNC 136 (194)
Q Consensus 92 l~~~~~~l~~~Gi~~~~~~~~-~~g~~~~~~~~~DPDG~~iEi~~~ 136 (194)
+.++.+.|.++|+-+.+-... ..| .-+.+.-.||..||+.+.
T Consensus 20 MRelkD~LSe~GiYi~RIkai~~SG---dkIVVi~aD~I~i~ls~T 62 (67)
T PHA02754 20 MRELKDILSEAGIYIDRIKAITTSG---DKIVVITADAIKIELSET 62 (67)
T ss_pred HHHHHHHHhhCceEEEEEEEEEecC---CEEEEEEcceEEEEEEee
Confidence 455667788899887765432 233 445666779999998864
No 201
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.81 E-value=1.6e+02 Score=19.28 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCCeEEcccee--cCcc-ceEEEEEeCCCCCE
Q 029385 92 MAIVERRLKEMKIDYVKSRVE--EGGI-NVDQLFFHDPDGSM 130 (194)
Q Consensus 92 l~~~~~~l~~~Gi~~~~~~~~--~~g~-~~~~~~~~DPDG~~ 130 (194)
+.++.+-+.+.|+.+...... ..|. ....||+ |.+|..
T Consensus 14 L~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~k 54 (75)
T cd04896 14 LYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKK 54 (75)
T ss_pred HHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCc
Confidence 667778889999999988766 5444 4467777 877764
No 202
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=27.69 E-value=70 Score=24.23 Aligned_cols=17 Identities=35% Similarity=0.698 Sum_probs=14.3
Q ss_pred EEEEEeCCCCCEEEEEe
Q 029385 119 DQLFFHDPDGSMIEICN 135 (194)
Q Consensus 119 ~~~~~~DPDG~~iEi~~ 135 (194)
..+|+.||+|.+..++.
T Consensus 156 ~~~~Lidp~G~i~~~y~ 172 (174)
T PF02630_consen 156 AFIYLIDPDGRIRAIYN 172 (174)
T ss_dssp SEEEEE-TTSEEEEEEC
T ss_pred cEEEEEcCCCcEEEEEc
Confidence 58999999999999885
No 203
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=27.24 E-value=1.2e+02 Score=23.07 Aligned_cols=38 Identities=16% Similarity=0.381 Sum_probs=25.7
Q ss_pred EEEeeCCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCC
Q 029385 85 ISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDG 128 (194)
Q Consensus 85 iaf~v~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG 128 (194)
+=|.+.|++.+.++|.+.|........ ..-.||..|++
T Consensus 6 ~K~~v~d~~~~~~~L~~~g~~~~~~~~------q~D~Yfd~p~~ 43 (174)
T TIGR00318 6 VKAKIPDKEKVVEKLKNKGFKFIKKEF------QHDIYFSNPCR 43 (174)
T ss_pred EEEEcCCHHHHHHHHHhcCcccccccc------eEEEeecCCCc
Confidence 346678999999999999866443221 24556666653
No 204
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=26.68 E-value=1.2e+02 Score=19.94 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=16.3
Q ss_pred EEcCCHHHHHHHHHHccCCeEeee
Q 029385 19 LVCRSVEASLDFYQNVLGFFPIRR 42 (194)
Q Consensus 19 l~v~Dle~s~~FY~~vLG~~~~~~ 42 (194)
....+=..+.++|++ |||+.+..
T Consensus 60 ~v~~~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 60 YVDADNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp EEETT-HHHHHHHHH-CT-EEEEE
T ss_pred EEECCCHHHHHHHHH-cCCEEEEE
Confidence 344577789999987 99998864
No 205
>PRK11700 hypothetical protein; Provisional
Probab=26.49 E-value=3.2e+02 Score=21.39 Aligned_cols=79 Identities=9% Similarity=0.113 Sum_probs=46.9
Q ss_pred CccEEEEeeCC---HHHHHHHHHhCCCeEEccceecCccceEEEEEeC---C---CCCEEEEEecCC-----CCcCcCCC
Q 029385 81 KDNHISFQCEN---MAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHD---P---DGSMIEICNCDV-----LPVVPLAG 146 (194)
Q Consensus 81 g~~hiaf~v~d---l~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~D---P---DG~~iEi~~~~~-----~p~~p~~~ 146 (194)
...|||++|.+ .++|.+.+.+.|-.+..... .| |-+++.+ | .|..|++++=+- .|...|..
T Consensus 39 ~~DHialR~n~~~tAe~w~~~l~~~G~llSen~I--NG---RPI~l~~L~qPl~~~~w~I~cvELP~P~~k~Yp~eGWEH 113 (187)
T PRK11700 39 EADHIALRCNQNETAERWRQGFLQCGELLSENII--NG---RPICLFELDQPLQVGHWSIDCVELPYPGEKRYPHEGWEH 113 (187)
T ss_pred cCcEEEEeeCCHHHHHHHHHHHHHhchhhhcccc--CC---eeEEEEEcCCCceeCCcEEEEEEeCCCCCCCCCCCCceE
Confidence 45799999995 55667778888876654332 23 4444444 4 588888888321 24444432
Q ss_pred cchhhcccccccchhhhhhh
Q 029385 147 DAVRIRSCTSTVNCNFHQQQ 166 (194)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~ 166 (194)
. .+++++ .+-.+....+.
T Consensus 114 I-ElVlp~-~~~t~~~~~~a 131 (187)
T PRK11700 114 I-ELVLPG-DPETLDARALA 131 (187)
T ss_pred E-EEEecC-CcchHHHHHHH
Confidence 2 356677 55555444333
No 206
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=26.45 E-value=2.2e+02 Score=20.45 Aligned_cols=55 Identities=13% Similarity=0.196 Sum_probs=33.2
Q ss_pred CccEEEEeeCCHHHHHHHHHhCCCeEE--ccce----ecCcc-------------ceEEEEEeCCCCCEEEEEe
Q 029385 81 KDNHISFQCENMAIVERRLKEMKIDYV--KSRV----EEGGI-------------NVDQLFFHDPDGSMIEICN 135 (194)
Q Consensus 81 g~~hiaf~v~dl~~~~~~l~~~Gi~~~--~~~~----~~~g~-------------~~~~~~~~DPDG~~iEi~~ 135 (194)
+..-+++.+++.+++.+.+++.|+.+. .... ..-+. .....|+.||+|.++..+.
T Consensus 64 ~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~ 137 (154)
T PRK09437 64 GVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFD 137 (154)
T ss_pred CCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEc
Confidence 455577777777777777777666432 2110 00010 1145699999999999974
No 207
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=25.40 E-value=2.1e+02 Score=22.51 Aligned_cols=56 Identities=20% Similarity=0.284 Sum_probs=33.8
Q ss_pred CccEEEEeeCC---HHHHHHHHHhC-CCe-----EEccc-----------eecCccceEEEEEeCCCCCEEEEEec
Q 029385 81 KDNHISFQCEN---MAIVERRLKEM-KID-----YVKSR-----------VEEGGINVDQLFFHDPDGSMIEICNC 136 (194)
Q Consensus 81 g~~hiaf~v~d---l~~~~~~l~~~-Gi~-----~~~~~-----------~~~~g~~~~~~~~~DPDG~~iEi~~~ 136 (194)
+..-|++.+|+ --+|.+..++. |+. +...+ .+..|...|..|+.||+|.+=-+...
T Consensus 67 g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~ 142 (194)
T COG0450 67 GVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILVN 142 (194)
T ss_pred CCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEEe
Confidence 45568888884 45566665544 432 11111 12344467999999999987666544
No 208
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=25.13 E-value=2.2e+02 Score=19.13 Aligned_cols=26 Identities=8% Similarity=0.234 Sum_probs=21.3
Q ss_pred cEEEEeeCCHHHHHHHHHhC-CCeEEc
Q 029385 83 NHISFQCENMAIVERRLKEM-KIDYVK 108 (194)
Q Consensus 83 ~hiaf~v~dl~~~~~~l~~~-Gi~~~~ 108 (194)
.|+.+.|+|+++..+...+. |.+...
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~ 29 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTK 29 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEec
Confidence 59999999999999988754 877654
No 209
>COG5397 Uncharacterized conserved protein [Function unknown]
Probab=24.82 E-value=66 Score=26.89 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=36.6
Q ss_pred ccEEEEeeC-CHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEec
Q 029385 82 DNHISFQCE-NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 136 (194)
Q Consensus 82 ~~hiaf~v~-dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~ 136 (194)
..-|+..|+ ++..+++.|++..-.+...++..+.. +..-|..++|+.+|+.+.
T Consensus 158 d~aiS~evdDsl~~il~lLr~~D~sFrpvPh~~d~a--k~~~fqn~~~y~VefLTt 211 (349)
T COG5397 158 DYAISREVDDSLPPILDLLRSVDPSFRPVPHRSDPA--KSSAFQNRDGYRVEFLTT 211 (349)
T ss_pred hhhhhHHhcccccHHHHHHhccCcccccCCccCCCc--cceeeecCCCeEEEEecc
Confidence 345777777 68888888887665555444322222 566679999999999973
No 210
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=24.40 E-value=3.1e+02 Score=20.60 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=33.1
Q ss_pred ccEEEEeeCC---HHHHHHHHHhCCCeEEccceecCccceEEEEEeC---C---CCCEEEEEec
Q 029385 82 DNHISFQCEN---MAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHD---P---DGSMIEICNC 136 (194)
Q Consensus 82 ~~hiaf~v~d---l~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~D---P---DG~~iEi~~~ 136 (194)
..|||++|.+ .++|.+.+.+.|-.+..... .| |-+++.+ | .|..|++++=
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~I--NG---RPI~l~~L~qPl~~~~~~I~cvEL 60 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENEI--NG---RPIALIKLEKPLQFAGWSISIVEL 60 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhcccc--CC---eeEEEEEcCCCceeCCcEEEEEEe
Confidence 4699999995 45666777788866654332 23 4444444 4 5888888873
No 211
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=23.42 E-value=2.1e+02 Score=18.34 Aligned_cols=37 Identities=19% Similarity=0.390 Sum_probs=27.4
Q ss_pred CHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEE
Q 029385 91 NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEIC 134 (194)
Q Consensus 91 dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~ 134 (194)
..-++.+.|+..|+...... | ....|..|||..+-|-
T Consensus 8 ~~ke~ik~Le~~Gf~~vrqk----G---SH~q~kHp~~~~vtVP 44 (66)
T COG1724 8 KAKEVIKALEKDGFQLVRQK----G---SHRQYKHPDGGRVTVP 44 (66)
T ss_pred CHHHHHHHHHhCCcEEEEee----c---ceeEEEcCCCCEEEec
Confidence 34578899999999888644 2 4567888888887664
No 212
>PRK06704 RNA polymerase factor sigma-70; Validated
Probab=23.08 E-value=71 Score=25.58 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=32.8
Q ss_pred CccEEEEeeCCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEE
Q 029385 81 KDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEIC 134 (194)
Q Consensus 81 g~~hiaf~v~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~ 134 (194)
...-.+|+-.|-+.+.+.+ .||.+...+.. .+...|+..||||+-.=+|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 226 (228)
T PRK06704 178 EVVVTSIREERPELLTKLL--PTIDFTKLPSK---QPVLLFNVKQPSSYSCMLC 226 (228)
T ss_pred HHHHHHHHhcCHHHHHHHh--ccceeeecccc---cceEEEEeeCCCccchhhc
Confidence 3344567777888888866 67777764422 1347899999999875443
No 213
>PF08094 Toxin_24: Conotoxin TVIIA/GS family; InterPro: IPR012629 This family consists of conotoxins isolated from the venom of cone snail Conus tulipa and Conus geographus. Conotoxin TVIIA, isolated from Conus tulipa displays little sequence homology with other well-characterised pharmacological classes of peptides, but displays similarity with conotoxin GS, a peptide from Conus geographus. Both these peptides block skeletal muscle sodium channels and also share several biochemical features and represent a distinct subgroup of the four-loop conotoxins [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1AG7_A 1EYO_A.
Probab=22.80 E-value=32 Score=18.34 Aligned_cols=8 Identities=50% Similarity=1.016 Sum_probs=4.7
Q ss_pred CCCCCccc
Q 029385 173 INPQSCLS 180 (194)
Q Consensus 173 ~~~~~~~~ 180 (194)
=|||.|.+
T Consensus 22 gnpqkci~ 29 (33)
T PF08094_consen 22 GNPQKCIG 29 (33)
T ss_dssp SSS-CEEE
T ss_pred CCccccee
Confidence 37788865
No 214
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=22.67 E-value=1.1e+02 Score=15.06 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=8.8
Q ss_pred EEEEeCCCCCEEE
Q 029385 120 QLFFHDPDGSMIE 132 (194)
Q Consensus 120 ~~~~~DPDG~~iE 132 (194)
...+.|++|++|-
T Consensus 8 ~~i~~D~~G~lWi 20 (24)
T PF07494_consen 8 YSIYEDSDGNLWI 20 (24)
T ss_dssp EEEEE-TTSCEEE
T ss_pred EEEEEcCCcCEEE
Confidence 4577899998873
No 215
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=22.66 E-value=1.7e+02 Score=17.83 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=19.4
Q ss_pred EEEEeeCCHHHHHHHHHhCCCeEE
Q 029385 84 HISFQCENMAIVERRLKEMKIDYV 107 (194)
Q Consensus 84 hiaf~v~dl~~~~~~l~~~Gi~~~ 107 (194)
.+-+.++|.+++.+.|++.|+++.
T Consensus 42 ~~rl~~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 42 ILRLIVSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred EEEEEECCHHHHHHHHHHCCCEEE
Confidence 356666899899999999998753
No 216
>PRK10234 DNA-binding transcriptional activator GutM; Provisional
Probab=22.48 E-value=1.3e+02 Score=21.58 Aligned_cols=51 Identities=10% Similarity=-0.095 Sum_probs=34.1
Q ss_pred EeeCCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEecC
Q 029385 87 FQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 137 (194)
Q Consensus 87 f~v~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~ 137 (194)
|++.+....++.|...|-.-.+........+.-.+...|.+|.++|-....
T Consensus 22 ~Qik~Fn~~~~~L~~~G~V~iGr~~grf~~g~IvllaiD~~~~I~d~~~M~ 72 (118)
T PRK10234 22 WQISRFNRAFDTLCQQGRVGVGRSSGRFKPRVVVALALDEQQRVVDTLFMK 72 (118)
T ss_pred HHHHHHHHHHHHHHhcCceEEecccCccCCCeEEEEEECCCCcEEeeEEEc
Confidence 344567788889998885433332222233557788999999999987654
No 217
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=22.39 E-value=3.5e+02 Score=20.45 Aligned_cols=55 Identities=11% Similarity=0.041 Sum_probs=39.4
Q ss_pred CCccEEEEeeCCHHHHHHHHHhCCCeEEccce-------------ecC------ccceEEEEEeCCCCCEEEEE
Q 029385 80 PKDNHISFQCENMAIVERRLKEMKIDYVKSRV-------------EEG------GINVDQLFFHDPDGSMIEIC 134 (194)
Q Consensus 80 ~g~~hiaf~v~dl~~~~~~l~~~Gi~~~~~~~-------------~~~------g~~~~~~~~~DPDG~~iEi~ 134 (194)
.+...+++.+++.....+...+.|+++.-... +.. ....|.-|+.|+||.+..+.
T Consensus 63 ~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~ 136 (157)
T COG1225 63 LGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW 136 (157)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe
Confidence 36678999999998888888888877442110 000 01348899999999999988
No 218
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=22.32 E-value=1.4e+02 Score=20.10 Aligned_cols=31 Identities=13% Similarity=0.165 Sum_probs=23.1
Q ss_pred CCccEEEEeeC---CHHHHHHHHHhCCCeEEccc
Q 029385 80 PKDNHISFQCE---NMAIVERRLKEMKIDYVKSR 110 (194)
Q Consensus 80 ~g~~hiaf~v~---dl~~~~~~l~~~Gi~~~~~~ 110 (194)
.+...++|+|+ +++++.++|++.|+++....
T Consensus 49 ~a~vlvgi~v~~~~~~~~l~~~L~~~gy~~~dls 82 (91)
T PF00585_consen 49 FARVLVGIEVPDAEDLEELIERLKALGYPYEDLS 82 (91)
T ss_dssp CSEEEEEEE-SSTHHHHHHHHHHTSSS-EEECTT
T ss_pred eeeEEEEEEeCCHHHHHHHHHHHHHcCCCeEECC
Confidence 45667899998 47889999999999887643
No 219
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=22.20 E-value=1.1e+02 Score=18.02 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=14.4
Q ss_pred eEEEEEeCCCCCEEEEEe
Q 029385 118 VDQLFFHDPDGSMIEICN 135 (194)
Q Consensus 118 ~~~~~~~DPDG~~iEi~~ 135 (194)
.-...+.||||..+.|.-
T Consensus 28 ~GsY~y~~pdG~~~~V~Y 45 (52)
T PF00379_consen 28 RGSYSYIDPDGQTRTVTY 45 (52)
T ss_pred EEEEEEECCCCCEEEEEE
Confidence 356788999999988864
No 220
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=21.83 E-value=1.5e+02 Score=18.82 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=20.4
Q ss_pred cEEEEee--CCHHHHHHHHHhCCCeEEc
Q 029385 83 NHISFQC--ENMAIVERRLKEMKIDYVK 108 (194)
Q Consensus 83 ~hiaf~v--~dl~~~~~~l~~~Gi~~~~ 108 (194)
+-+++.+ +|.+.+.+.|+++|+.+..
T Consensus 41 CG~al~~~~~d~~~i~~~l~~~~i~~~~ 68 (73)
T PF11823_consen 41 CGLALRFEPEDLEKIKEILEENGIEYEG 68 (73)
T ss_pred CCEEEEEChhhHHHHHHHHHHCCCCeeE
Confidence 4456655 4999999999999988764
No 221
>COG1218 CysQ 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase [Inorganic ion transport and metabolism]
Probab=21.76 E-value=1.1e+02 Score=25.37 Aligned_cols=34 Identities=29% Similarity=0.537 Sum_probs=20.2
Q ss_pred HHHHHhC--CCeEEcccee----cCccceEEEEEeCC-CCC
Q 029385 96 ERRLKEM--KIDYVKSRVE----EGGINVDQLFFHDP-DGS 129 (194)
Q Consensus 96 ~~~l~~~--Gi~~~~~~~~----~~g~~~~~~~~~DP-DG~ 129 (194)
++.|++. +++++.+... ........+|+.|| ||.
T Consensus 55 ~~~L~a~~P~ipvv~EE~~~~~~~~~~~~~rfWLiDPLDGT 95 (276)
T COG1218 55 LEGLRALFPDIPVVSEEEEAIDWEERLHWDRFWLVDPLDGT 95 (276)
T ss_pred HHHHHHhCCCCCEEEeccccCCCCCcccCceEEEECCCcCc
Confidence 4566655 4766654422 11123478999999 875
No 222
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=21.26 E-value=1.4e+02 Score=21.08 Aligned_cols=50 Identities=16% Similarity=0.068 Sum_probs=33.3
Q ss_pred eeCCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEecC
Q 029385 88 QCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 137 (194)
Q Consensus 88 ~v~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~~~ 137 (194)
+..+..+.+++|...|-.-.+.....-..+.-.+...|++|.+++-....
T Consensus 22 Qik~f~~~~~~l~~~G~V~iG~~~g~f~~g~Ivlla~D~~~~I~~~~~M~ 71 (109)
T PF06923_consen 22 QIKNFNKAYKELRKKGRVGIGRSKGRFRPGVIVLLAVDEDGRIVDAEIMK 71 (109)
T ss_pred HHHHHHHHHHHHHhCCcEEEeeecCcccCCeEEEEEECCCCcEEEEEEEe
Confidence 44467788889998884433322222223557788899999999887654
No 223
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=21.19 E-value=2.9e+02 Score=19.01 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCC--EEEEEe
Q 029385 90 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGS--MIEICN 135 (194)
Q Consensus 90 ~dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~--~iEi~~ 135 (194)
.+.+.+.++|+..+|-........++.....++..+..|. ++|+.-
T Consensus 36 ~~~~~i~~~L~~~nI~~iA~~~~~~~~~~~y~s~~~~~~~~fL~El~~ 83 (114)
T PF09066_consen 36 PSPDAIEEKLQANNIFTIASGKVDNGQKFFYFSAKTTNGIWFLVELTI 83 (114)
T ss_dssp --HHHHHHHHHCTT-EEEEEEECTT-EEEEEEEEEBTTS-EEEEEEEE
T ss_pred CcHHHHHHHHHHCCEEEEecCCCCccccEEEEEEEcCCCcEEEEEEEE
Confidence 3899999999999999876543333332233344455543 344443
No 224
>PRK03094 hypothetical protein; Provisional
Probab=20.91 E-value=2.7e+02 Score=18.59 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=34.9
Q ss_pred eeC-CHHHHHHHHHhCCCeEEccceecCccceEEEEEeCCCCCEEEEEe
Q 029385 88 QCE-NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 135 (194)
Q Consensus 88 ~v~-dl~~~~~~l~~~Gi~~~~~~~~~~g~~~~~~~~~DPDG~~iEi~~ 135 (194)
.|+ +|..+.+.|++.|.++..-..+........+.+..-|.|+.-+-.
T Consensus 5 aVE~~Ls~i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG~d~n~mgi~d 53 (80)
T PRK03094 5 GVEQSLTDVQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQDSNVMGIAD 53 (80)
T ss_pred EeecCcHHHHHHHHHCCCEEEecCcccccCCcCEEEEeCCCcceecccc
Confidence 455 788999999999999986543222223478888888888888754
No 225
>PF12142 PPO1_DWL: Polyphenol oxidase middle domain; InterPro: IPR022739 This domain is found in bacteria and eukaryotes and is approximately 50 amino acids in length. It is found in association with PF00264 from PFAM and PF12143 from PFAM. Most members are annotated as being polyphenol oxidases, and many are from plants or plastids. There is a conserved DWL sequence motif. ; GO: 0004097 catechol oxidase activity, 0055114 oxidation-reduction process; PDB: 1BT3_A 1BUG_B 1BT1_B 1BT2_B 2P3X_A.
Probab=20.87 E-value=1.2e+02 Score=18.65 Aligned_cols=19 Identities=21% Similarity=0.520 Sum_probs=13.4
Q ss_pred EEEEEeCCCCCEEEEEecC
Q 029385 119 DQLFFHDPDGSMIEICNCD 137 (194)
Q Consensus 119 ~~~~~~DPDG~~iEi~~~~ 137 (194)
..|.|.|.+|+.+.+.-..
T Consensus 10 s~F~FYDen~~lVrv~vrD 28 (54)
T PF12142_consen 10 SSFLFYDENGQLVRVKVRD 28 (54)
T ss_dssp -EEEEE-TTS-EEEEEGGG
T ss_pred CeeEEECCCCCEEEEEhhh
Confidence 4678999999999998654
No 226
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.30 E-value=1.4e+02 Score=18.47 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=20.5
Q ss_pred CccEEEEeeC---CHHHHHHHHHhCCCeEE
Q 029385 81 KDNHISFQCE---NMAIVERRLKEMKIDYV 107 (194)
Q Consensus 81 g~~hiaf~v~---dl~~~~~~l~~~Gi~~~ 107 (194)
...++.+.+. .++++.+.|++.|+.+.
T Consensus 38 ~~v~v~ie~~~~~~~~~i~~~L~~~G~~~~ 67 (68)
T cd04885 38 ARVLVGIQVPDREDLAELKERLEALGYPYV 67 (68)
T ss_pred eEEEEEEEeCCHHHHHHHHHHHHHcCCCcc
Confidence 3456777776 68888999999998653
Done!