Query 029386
Match_columns 194
No_of_seqs 160 out of 611
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 12:05:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029386.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029386hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3282 Uncharacterized conser 100.0 7.5E-52 1.6E-56 344.0 13.7 131 64-194 60-190 (190)
2 TIGR00283 arch_pth2 peptidyl-t 100.0 1.3E-47 2.8E-52 299.1 14.7 115 80-194 1-115 (115)
3 cd02430 PTH2 Peptidyl-tRNA hyd 100.0 6.6E-47 1.4E-51 295.1 14.6 115 80-194 1-115 (115)
4 PF01981 PTH2: Peptidyl-tRNA h 100.0 3.8E-47 8.2E-52 294.4 12.6 116 79-194 1-116 (116)
5 PRK04322 peptidyl-tRNA hydrola 100.0 1.4E-46 3E-51 292.5 14.0 113 82-194 1-113 (113)
6 cd02407 PTH2_family Peptidyl-t 100.0 3.4E-46 7.3E-51 290.9 14.8 115 80-194 1-115 (115)
7 COG1990 pth2 Peptidyl-tRNA hyd 100.0 1.4E-41 3E-46 266.6 10.8 118 77-194 3-122 (122)
8 cd02429 PTH2_like Peptidyl-tRN 100.0 3.9E-39 8.4E-44 252.0 13.1 109 80-194 1-116 (116)
9 KOG3305 Uncharacterized conser 99.8 6.7E-20 1.4E-24 140.4 4.2 112 77-194 1-119 (121)
10 PF09391 DUF2000: Protein of u 98.1 5.9E-06 1.3E-10 66.2 6.2 109 79-194 1-132 (133)
11 COG4954 Uncharacterized protei 88.1 0.66 1.4E-05 36.8 3.6 67 126-193 54-133 (135)
12 COG5336 Uncharacterized protei 70.4 2.1 4.5E-05 33.9 0.9 19 30-48 50-68 (116)
13 PF06295 DUF1043: Protein of u 65.6 3.1 6.7E-05 32.9 1.1 13 34-46 4-16 (128)
14 PF02426 MIase: Muconolactone 63.8 11 0.00023 28.6 3.6 86 82-182 1-90 (91)
15 TIGR00179 murB UDP-N-acetyleno 60.7 14 0.00029 32.8 4.3 37 122-158 6-42 (284)
16 PF06295 DUF1043: Protein of u 59.8 3.9 8.5E-05 32.3 0.7 17 31-47 5-21 (128)
17 cd02012 TPP_TK Thiamine pyroph 57.8 66 0.0014 27.6 8.0 44 117-160 181-225 (255)
18 PRK14652 UDP-N-acetylenolpyruv 56.2 19 0.00041 32.3 4.5 42 121-163 28-69 (302)
19 PRK11677 hypothetical protein; 56.2 4.6 0.0001 32.6 0.5 14 32-45 10-23 (134)
20 COG3959 Transketolase, N-termi 55.9 40 0.00086 30.0 6.3 43 118-160 196-239 (243)
21 COG1206 Gid NAD(FAD)-utilizing 53.3 21 0.00045 33.8 4.3 51 138-190 99-154 (439)
22 TIGR00942 2a6301s05 Monovalent 51.1 5.5 0.00012 32.0 0.2 24 23-46 4-27 (144)
23 PF00456 Transketolase_N: Tran 50.9 28 0.00062 31.8 4.8 42 119-160 198-241 (332)
24 COG1863 MnhE Multisubunit Na+/ 50.0 4.4 9.6E-05 33.5 -0.5 23 24-46 19-41 (158)
25 PF03672 UPF0154: Uncharacteri 49.8 7.6 0.00017 27.8 0.8 15 32-46 7-21 (64)
26 PRK12436 UDP-N-acetylenolpyruv 49.2 28 0.0006 31.3 4.4 39 123-162 31-69 (305)
27 PRK11677 hypothetical protein; 48.6 8.7 0.00019 31.1 1.0 15 33-47 7-21 (134)
28 PRK13906 murB UDP-N-acetylenol 48.6 27 0.00058 31.4 4.3 36 122-157 30-65 (307)
29 PRK13905 murB UDP-N-acetylenol 47.8 28 0.0006 30.9 4.2 42 121-163 23-64 (298)
30 PRK14649 UDP-N-acetylenolpyruv 46.2 30 0.00065 30.9 4.2 37 121-157 13-49 (295)
31 cd06557 KPHMT-like Ketopantoat 44.7 1.2E+02 0.0025 26.8 7.6 25 88-112 78-103 (254)
32 PF01565 FAD_binding_4: FAD bi 43.8 36 0.00078 25.8 3.8 36 130-166 2-37 (139)
33 PRK13903 murB UDP-N-acetylenol 43.7 38 0.00082 31.4 4.5 37 121-157 25-61 (363)
34 PF12687 DUF3801: Protein of u 43.6 2.1E+02 0.0044 24.4 9.2 54 119-176 23-76 (204)
35 PRK00046 murB UDP-N-acetylenol 43.0 34 0.00073 31.4 4.0 37 121-157 13-49 (334)
36 COG3105 Uncharacterized protei 40.3 17 0.00036 29.7 1.4 13 34-46 13-25 (138)
37 PTZ00222 60S ribosomal protein 39.9 26 0.00057 31.5 2.7 65 124-188 144-216 (263)
38 cd05008 SIS_GlmS_GlmD_1 SIS (S 39.7 70 0.0015 23.6 4.7 39 139-177 60-98 (126)
39 PRK14650 UDP-N-acetylenolpyruv 39.6 39 0.00085 30.6 3.9 37 121-157 25-61 (302)
40 TIGR00204 dxs 1-deoxy-D-xylulo 38.7 3.5E+02 0.0077 26.7 10.6 38 123-160 234-272 (617)
41 PRK08382 putative monovalent c 38.6 8.9 0.00019 32.9 -0.4 24 23-46 49-72 (201)
42 PF12072 DUF3552: Domain of un 38.5 15 0.00033 30.9 1.0 15 33-47 7-21 (201)
43 COG0021 TktA Transketolase [Ca 38.1 1E+02 0.0022 31.2 6.7 52 117-179 201-254 (663)
44 PRK14894 glycyl-tRNA synthetas 37.7 31 0.00066 34.0 3.0 43 134-176 469-516 (539)
45 PRK10132 hypothetical protein; 36.8 13 0.00029 28.9 0.3 23 18-47 83-105 (108)
46 PRK01844 hypothetical protein; 35.6 6.1 0.00013 29.0 -1.6 16 31-46 13-28 (72)
47 PF09413 DUF2007: Domain of un 35.4 72 0.0016 21.5 3.9 34 131-165 2-35 (67)
48 TIGR00580 mfd transcription-re 34.6 1.3E+02 0.0028 31.5 7.0 58 119-180 228-285 (926)
49 PRK14648 UDP-N-acetylenolpyruv 34.4 53 0.0011 30.6 3.9 37 121-157 22-58 (354)
50 PRK00311 panB 3-methyl-2-oxobu 34.3 2E+02 0.0043 25.6 7.4 24 88-111 81-105 (264)
51 cd05014 SIS_Kpsf KpsF-like pro 34.2 1.1E+02 0.0025 22.5 5.2 38 139-176 61-98 (128)
52 PF13373 DUF2407_C: DUF2407 C- 34.2 17 0.00036 29.5 0.5 15 32-46 92-106 (140)
53 PF12732 YtxH: YtxH-like prote 33.5 22 0.00047 25.1 1.0 16 32-47 5-20 (74)
54 cd04906 ACT_ThrD-I_1 First of 33.5 81 0.0018 22.5 4.1 32 126-157 39-71 (85)
55 PRK00523 hypothetical protein; 31.9 22 0.00047 26.1 0.8 15 32-46 15-29 (72)
56 PRK14653 UDP-N-acetylenolpyruv 31.6 53 0.0011 29.5 3.4 36 122-158 27-62 (297)
57 cd02193 PurL Formylglycinamide 31.2 98 0.0021 26.8 4.9 38 120-158 232-269 (272)
58 COG3856 Sbp Uncharacterized co 31.2 26 0.00057 27.5 1.2 19 33-51 5-23 (113)
59 PF14967 FAM70: FAM70 protein 30.5 42 0.00092 30.9 2.6 20 92-111 94-113 (327)
60 PRK12651 putative monovalent c 29.7 15 0.00032 29.9 -0.4 25 23-47 18-42 (158)
61 COG3763 Uncharacterized protei 29.6 8.8 0.00019 28.1 -1.6 25 22-46 4-28 (71)
62 cd01449 TST_Repeat_2 Thiosulfa 29.4 1.1E+02 0.0024 22.2 4.3 38 127-164 77-114 (118)
63 cd08346 PcpA_N_like N-terminal 29.3 89 0.0019 22.0 3.7 29 127-155 73-101 (126)
64 COG0812 MurB UDP-N-acetylmuram 29.3 72 0.0016 29.0 3.8 36 122-157 14-49 (291)
65 cd00861 ProRS_anticodon_short 29.3 1.4E+02 0.0031 20.7 4.8 50 124-177 28-77 (94)
66 cd07241 Glo_EDI_BRP_like_3 Thi 29.2 1E+02 0.0022 21.8 4.0 29 127-155 70-98 (125)
67 smart00450 RHOD Rhodanese Homo 28.8 1.2E+02 0.0027 20.3 4.2 45 121-165 49-93 (100)
68 cd04885 ACT_ThrD-I Tandem C-te 27.7 1E+02 0.0022 20.9 3.6 28 127-154 38-65 (68)
69 KOG1232 Proteins containing th 27.4 1.3E+02 0.0027 29.2 5.1 49 122-172 81-131 (511)
70 cd08362 BphC5-RrK37_N_like N-t 26.2 2.4E+02 0.0052 19.9 6.8 29 127-155 58-86 (120)
71 TIGR03266 methan_mark_1 putati 26.0 4.5E+02 0.0098 24.1 8.5 81 87-176 151-232 (376)
72 cd08347 PcpA_C_like C-terminal 26.0 3.1E+02 0.0066 21.6 6.6 67 127-193 65-139 (157)
73 PF02829 3H: 3H domain; Inter 25.5 91 0.002 23.8 3.2 28 126-153 69-96 (98)
74 PRK08965 putative monovalent c 25.4 20 0.00042 29.3 -0.5 25 23-47 22-46 (162)
75 cd02017 TPP_E1_EcPDC_like Thia 25.4 2.5E+02 0.0053 26.6 6.7 26 135-160 289-315 (386)
76 PRK12652 putative monovalent c 25.2 21 0.00046 33.0 -0.3 23 24-46 184-206 (357)
77 PRK12856 hypothetical protein; 25.1 1.2E+02 0.0027 23.3 4.0 42 138-179 59-100 (103)
78 PF08219 TOM13: Outer membrane 25.0 31 0.00066 25.6 0.5 10 31-40 43-52 (77)
79 PF09472 MtrF: Tetrahydrometha 24.9 40 0.00087 24.1 1.1 17 30-46 39-55 (64)
80 PTZ00299 homoserine kinase; Pr 24.8 2.9E+02 0.0062 25.3 6.9 87 78-178 169-273 (336)
81 PRK08383 putative monovalent c 24.7 21 0.00046 29.7 -0.4 21 27-47 26-46 (168)
82 TIGR03221 muco_delta muconolac 24.7 1E+02 0.0022 23.5 3.3 72 84-160 2-77 (90)
83 TIGR00441 gmhA phosphoheptose 24.5 2E+02 0.0043 22.7 5.2 38 139-176 93-130 (154)
84 PF05957 DUF883: Bacterial pro 24.4 46 0.001 24.4 1.4 22 19-47 71-92 (94)
85 cd07240 ED_TypeI_classII_N N-t 24.4 1.7E+02 0.0036 20.5 4.4 30 127-156 57-86 (117)
86 PRK13937 phosphoheptose isomer 24.4 1.7E+02 0.0037 23.9 4.9 41 138-178 119-159 (188)
87 cd00858 GlyRS_anticodon GlyRS 23.9 3E+02 0.0066 20.6 6.0 39 139-179 64-102 (121)
88 COG5304 Uncharacterized protei 23.7 95 0.0021 23.8 3.0 29 127-156 50-78 (92)
89 PF09527 ATPase_gene1: Putativ 23.7 33 0.00072 22.8 0.5 18 31-48 9-26 (55)
90 PRK12855 hypothetical protein; 23.6 1.5E+02 0.0031 22.9 4.1 42 138-179 59-100 (103)
91 COG1184 GCD2 Translation initi 23.3 1.9E+02 0.0042 26.4 5.4 34 128-161 146-179 (301)
92 cd00738 HGTP_anticodon HGTP an 23.3 2.5E+02 0.0055 19.2 6.1 54 122-179 26-79 (94)
93 cd07255 Glo_EDI_BRP_like_12 Th 23.1 1.4E+02 0.0031 21.3 3.8 30 126-155 63-92 (125)
94 cd09012 Glo_EDI_BRP_like_24 Th 23.0 1.3E+02 0.0027 21.9 3.6 26 129-154 70-95 (124)
95 TIGR03127 RuMP_HxlB 6-phospho 22.9 1.9E+02 0.004 23.0 4.8 38 139-176 86-123 (179)
96 PF15608 PELOTA_1: PELOTA RNA 22.9 1.8E+02 0.004 22.4 4.5 32 129-160 57-88 (100)
97 PF02624 YcaO: YcaO-like famil 22.7 4.8E+02 0.01 22.5 7.7 68 105-177 124-193 (332)
98 PRK07714 hypothetical protein; 22.4 2.5E+02 0.0053 20.9 5.1 41 118-158 24-66 (100)
99 cd07242 Glo_EDI_BRP_like_6 Thi 22.4 1.6E+02 0.0035 21.1 4.1 31 126-156 67-97 (128)
100 PF06983 3-dmu-9_3-mt: 3-demet 22.3 1.1E+02 0.0024 23.3 3.3 25 128-152 72-96 (116)
101 PRK06724 hypothetical protein; 22.0 1.4E+02 0.0031 22.7 3.8 29 127-155 63-91 (128)
102 PF04093 MreD: rod shape-deter 21.9 50 0.0011 25.7 1.3 19 33-51 51-69 (160)
103 PRK11183 D-lactate dehydrogena 21.3 3.8E+02 0.0082 26.7 7.3 44 126-171 36-79 (564)
104 PF00578 AhpC-TSA: AhpC/TSA fa 21.0 3.2E+02 0.007 19.5 6.5 42 119-163 51-92 (124)
105 PRK05601 DNA polymerase III su 21.0 95 0.0021 29.3 3.1 66 82-163 298-363 (377)
106 TIGR03426 shape_MreD rod shape 20.9 59 0.0013 25.4 1.5 17 34-50 49-65 (154)
107 PRK05298 excinuclease ABC subu 20.9 3.1E+02 0.0068 27.2 6.8 40 119-159 438-477 (652)
108 COG0083 ThrB Homoserine kinase 20.8 6.4E+02 0.014 23.0 8.8 94 76-180 157-263 (299)
109 cd08573 GDPD_GDE1 Glycerophosp 20.8 2.3E+02 0.005 24.4 5.3 40 116-160 217-256 (258)
110 PF10166 DUF2368: Uncharacteri 20.6 52 0.0011 26.5 1.1 25 28-52 73-97 (131)
111 PRK12754 transketolase; Review 20.5 2.9E+02 0.0063 27.7 6.5 44 117-160 199-244 (663)
112 COG0313 Predicted methyltransf 20.4 3.1E+02 0.0068 24.8 6.1 69 117-187 43-122 (275)
113 cd08361 PpCmtC_N N-terminal do 20.3 1.7E+02 0.0036 21.5 3.8 26 130-155 62-87 (124)
114 cd08360 MhqB_like_C C-terminal 20.3 1.7E+02 0.0038 21.7 4.0 31 126-156 61-91 (134)
115 cd00860 ThrRS_anticodon ThrRS 20.3 2.5E+02 0.0055 19.1 4.6 55 121-179 22-76 (91)
116 COG2061 ACT-domain-containing 20.2 2.6E+02 0.0056 23.7 5.1 46 130-179 51-96 (170)
117 PTZ00365 60S ribosomal protein 20.2 96 0.0021 28.0 2.8 52 125-176 145-201 (266)
118 PF13807 GNVR: G-rich domain o 20.1 60 0.0013 23.1 1.3 17 32-48 62-78 (82)
119 PRK10404 hypothetical protein; 20.1 62 0.0013 24.7 1.4 21 19-46 78-98 (101)
120 PF03129 HGTP_anticodon: Antic 20.0 66 0.0014 22.7 1.5 53 121-177 23-75 (94)
121 COG4575 ElaB Uncharacterized c 20.0 63 0.0014 25.2 1.4 22 19-47 81-102 (104)
No 1
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=7.5e-52 Score=344.04 Aligned_cols=131 Identities=53% Similarity=0.861 Sum_probs=125.3
Q ss_pred CCCcccccccCCCCCCeeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHHhCCCCeEEEecCCHHHHHH
Q 029386 64 RKPQEQVSVSSDGDQDLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNK 143 (194)
Q Consensus 64 ~~~~~~~~~~~~~~~~~kmVlVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~~~G~~KIVLk~~~e~eL~~ 143 (194)
++.+.++....+..+++|||||||+||+|++|||||||||||+++|.++++++|..+++|+++||+||||+|+|+++|.+
T Consensus 60 sk~~~e~~~l~~~~~~~KMvLVVR~DLkMgkGKIAAQc~HAalg~Y~~l~~~~p~ll~~We~~GQ~KIvvk~~~e~~l~~ 139 (190)
T KOG3282|consen 60 SKASSESEVLGDLKGNFKMVLVVRNDLKMGKGKIAAQCAHAALGVYKHLMQRDPELLRRWENCGQAKIVVKAESEEELME 139 (190)
T ss_pred ccchhhhhcccCcCCceEEEEEEeccCCCccchhHHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCceEEEEcCCHHHHHH
Confidence 34455566678888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCeEEEEcCCCCcccCCCeeEEEecCCCccchhhhcCCCCCC
Q 029386 144 LWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194 (194)
Q Consensus 144 L~~~A~~~glp~~~V~DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl 194 (194)
|++.|+..|+++++|+|||||||+|||.||++|||+|.+.||.||||||||
T Consensus 140 l~~~A~~~gl~t~~i~DAGrTQIa~gS~TVl~Igpg~~~~id~VTG~LKL~ 190 (190)
T KOG3282|consen 140 LQKDAKKLGLYTHLIQDAGRTQIAPGSRTVLGIGPGPVEVIDSVTGHLKLY 190 (190)
T ss_pred HHHHHHHcCCcEEEEEcCCccccCCCCeEEEEEcCccHHHHhhcCcceeeC
Confidence 999999999999999999999999999999999999999999999999997
No 2
>TIGR00283 arch_pth2 peptidyl-tRNA hydrolase. This model describes an archaeal/eukaryotic form of peptidyl-tRNA hydrolase. Most bacterial forms are described by TIGR00447.
Probab=100.00 E-value=1.3e-47 Score=299.15 Aligned_cols=115 Identities=38% Similarity=0.629 Sum_probs=112.7
Q ss_pred eeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEE
Q 029386 80 LKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVA 159 (194)
Q Consensus 80 ~kmVlVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V~ 159 (194)
+||||+||+||+||+||+||||||||+++|.++++.+++.+++|++.||+||||+++|++||++|.++|++.||++++|+
T Consensus 1 ~k~vlvVr~DL~M~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~G~~KVvlk~~~~~el~~l~~~a~~~~l~~~~v~ 80 (115)
T TIGR00283 1 MKMVIVIRDDLGMGKGKIAAQVCHAAIIGFLKSKRKNPSLRRKWLDEGQKKVVLKVNSLEELLEIYHKAESLGLVTGLIR 80 (115)
T ss_pred CeEEEEEeCCCCCChhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 69999999999999999999999999999998888889999999999999999999999999999999999999999999
Q ss_pred cCCCCcccCCCeeEEEecCCCccchhhhcCCCCCC
Q 029386 160 DAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194 (194)
Q Consensus 160 DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl 194 (194)
|||||||||||.|||||||+|++.||+||||||||
T Consensus 81 DAG~Tei~pgs~TvlaigP~~~~~id~itg~LkLl 115 (115)
T TIGR00283 81 DAGHTQIPPGTITAVGIGPDEDEKIDKITGDLKLL 115 (115)
T ss_pred cCCcceeCCCCcEEEEECCCCHHHHHHHhCCCccC
Confidence 99999999999999999999999999999999997
No 3
>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.
Probab=100.00 E-value=6.6e-47 Score=295.08 Aligned_cols=115 Identities=54% Similarity=0.878 Sum_probs=112.9
Q ss_pred eeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEE
Q 029386 80 LKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVA 159 (194)
Q Consensus 80 ~kmVlVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V~ 159 (194)
+|||||||+||+||+||+||||||||+++|..+++.+++.+++|++.||+||||+++|+++|.+|.++|++.||++++|+
T Consensus 1 ~K~vivVr~DL~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~G~~KiVl~~~~~~el~~l~~~a~~~~l~~~~v~ 80 (115)
T cd02430 1 YKMVLVVRNDLKMGKGKIAAQCAHAALGAYKKAMKSNPELLRAWEREGQKKIVLKVNSEEELLELKKKAKSLGLPTSLIQ 80 (115)
T ss_pred CEEEEEEeCCCCCCcchHHHHHHHHHHHHHHHHHhcCHHHHHHHHhcCCcEEEEecCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 69999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred cCCCCcccCCCeeEEEecCCCccchhhhcCCCCCC
Q 029386 160 DAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194 (194)
Q Consensus 160 DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl 194 (194)
|||||||||||.|||||||+|++.||+||||||||
T Consensus 81 DAG~Tev~~gt~T~laigP~~~~~i~~itg~LkL~ 115 (115)
T cd02430 81 DAGRTQIAPGTITVLGIGPAPEELIDKVTGHLKLL 115 (115)
T ss_pred eCCCcccCCCCceEEEeCCCCHHHHHHhhCCCcCC
Confidence 99999999999999999999999999999999997
No 4
>PF01981 PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR002833 Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation.; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 1RLK_A 1XTY_C 2ZV3_I 2D3K_A 1WN2_A 1Q7S_A 3ERJ_B 1RZW_A.
Probab=100.00 E-value=3.8e-47 Score=294.39 Aligned_cols=116 Identities=51% Similarity=0.863 Sum_probs=110.9
Q ss_pred CeeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEE
Q 029386 79 DLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVV 158 (194)
Q Consensus 79 ~~kmVlVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V 158 (194)
|+|||||||+||+||+||+||||||||+++|.++.+++++.++.|+.+||+||||+++|+++|++|.++|+..|||+++|
T Consensus 1 ~~k~vivVr~DL~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~g~~Kivlkv~~e~~L~~l~~~a~~~gl~~~~i 80 (116)
T PF01981_consen 1 ELKMVIVVRKDLKMSKGKIAAQCAHAAVAAYAKLHEDDPEWLREWENNGQKKIVLKVPSEEELLELAKKAKEAGLPHYLI 80 (116)
T ss_dssp SEEEEEEEESSSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT-SEEEE
T ss_pred CeEEEEEEECCCCCCcchHHHHHHHHHHHHHHHhhhcCHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHCCCCEEEE
Confidence 68999999999999999999999999999999988788899999999999999999999999999999999999999999
Q ss_pred EcCCCCcccCCCeeEEEecCCCccchhhhcCCCCCC
Q 029386 159 ADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194 (194)
Q Consensus 159 ~DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl 194 (194)
+|||||||||||.|||||||+|++.||+||||||||
T Consensus 81 ~Dag~Tei~pgs~TvlaigP~~~~~i~~it~~LkL~ 116 (116)
T PF01981_consen 81 RDAGRTEIPPGSVTVLAIGPAPKEEIDKITGHLKLL 116 (116)
T ss_dssp EETSSSSSSTTCEEEEEEEEEEHHHHHHHHTTSEB-
T ss_pred EECCCCcCCCCCeEEEEECcCCHHHHHHHhCcCcCC
Confidence 999999999999999999999999999999999997
No 5
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=100.00 E-value=1.4e-46 Score=292.46 Aligned_cols=113 Identities=45% Similarity=0.724 Sum_probs=111.0
Q ss_pred EEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcC
Q 029386 82 LALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADA 161 (194)
Q Consensus 82 mVlVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V~DA 161 (194)
||||||+||+||+||+||||||||+++|.++++++++.+++|+..||+||||+++|+++|++|.++|++.||++++|+||
T Consensus 1 ~vivVr~DL~M~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~v~DA 80 (113)
T PRK04322 1 QVIVVRTDLKMGKGKLAAQVAHAAVSAYEKADKSNREWLEEWLNEGQKKVVLKVNSEEELLELKEKAERLGLPTALIRDA 80 (113)
T ss_pred CEEEEeCCCCCCcchHHHHHHHHHHHHHHHHHhcCHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 89999999999999999999999999999888888999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCeeEEEecCCCccchhhhcCCCCCC
Q 029386 162 GRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194 (194)
Q Consensus 162 GrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl 194 (194)
|||||||||.|||||||+|++.||+||||||||
T Consensus 81 G~Tei~~gs~TvlaigP~~~~~i~~itg~LkLl 113 (113)
T PRK04322 81 GLTQLPPGTVTALGIGPAPEEKIDKITGDLKLL 113 (113)
T ss_pred CCcccCCCCcEEEEeCCCCHHHHHHhhCCCcCC
Confidence 999999999999999999999999999999997
No 6
>cd02407 PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes.
Probab=100.00 E-value=3.4e-46 Score=290.88 Aligned_cols=115 Identities=51% Similarity=0.815 Sum_probs=112.7
Q ss_pred eeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEE
Q 029386 80 LKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVA 159 (194)
Q Consensus 80 ~kmVlVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V~ 159 (194)
+|||||||+||+||+||+||||||||+++|.+++..++..++.|+.+||+||||+++|+++|++|.++|++.||++++|+
T Consensus 1 ~k~vivVr~dl~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~g~~KvVl~v~~~~~l~~l~~~a~~~gl~~~~v~ 80 (115)
T cd02407 1 YKMVIVVRNDLKMGKGKIAAQCAHAALAAYKKAMKDPPTLLRAWELEGQKKVVLKVPSEEELLELAKKAKELGLPHSLIQ 80 (115)
T ss_pred CEEEEEEECCCCCChhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHhCCCcEEEEECCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 69999999999999999999999999999999988888899999999999999999999999999999999999999999
Q ss_pred cCCCCcccCCCeeEEEecCCCccchhhhcCCCCCC
Q 029386 160 DAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194 (194)
Q Consensus 160 DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl 194 (194)
|||||||||||.|||||||+|++.||+||||||||
T Consensus 81 DAG~Tqi~~gt~TvlaigP~~~~~i~~itg~LkL~ 115 (115)
T cd02407 81 DAGRTQIPPGTPTVLAIGPAPKEKVDKVTGHLKLL 115 (115)
T ss_pred ECCCcccCCCCceEEEECCCCHHHHHHHcCcCcCC
Confidence 99999999999999999999999999999999997
No 7
>COG1990 pth2 Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-41 Score=266.61 Aligned_cols=118 Identities=43% Similarity=0.684 Sum_probs=113.7
Q ss_pred CCCeeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhC--HHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCC
Q 029386 77 DQDLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSD--RHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLP 154 (194)
Q Consensus 77 ~~~~kmVlVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~--~~~l~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp 154 (194)
..++||+|+||.||+|++||+|||||||++.++..+++.+ ++++++|++.||+||||+|++++||.++.++|+..|+|
T Consensus 3 ~~~~k~vIvVr~Dl~m~kGKiaaQvaHaa~~~~~~~~~~~~~~~~~~eWl~~Gq~Kivlkv~~~~eL~~~~~~A~~~gl~ 82 (122)
T COG1990 3 RGQYKMVIVVRDDLKMSKGKLAAQVAHAAVDAAKLAIKSTELDEWLDEWLREGQKKIVLKVGSLDELLELHQKAESLGLP 82 (122)
T ss_pred cccceeEEEEecccccccchHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHHHHHcCCh
Confidence 3579999999999999999999999999999999998766 47899999999999999999999999999999999999
Q ss_pred eEEEEcCCCCcccCCCeeEEEecCCCccchhhhcCCCCCC
Q 029386 155 TFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194 (194)
Q Consensus 155 ~~~V~DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl 194 (194)
+.+|+|||+|||||||.|||+|||+|.+.+|.|||+||||
T Consensus 83 ~~~i~DaG~TqippGt~T~L~iGP~~~~~iD~iTG~lkL~ 122 (122)
T COG1990 83 TALIRDAGRTQIPPGTITVLGIGPAPEEVIDKITGDLKLL 122 (122)
T ss_pred HHHHHhcCccccCCCCeEEEEECCCchhhhcccccccccC
Confidence 9999999999999999999999999999999999999997
No 8
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=100.00 E-value=3.9e-39 Score=252.04 Aligned_cols=109 Identities=22% Similarity=0.265 Sum_probs=101.2
Q ss_pred eeEEEEEeCCC----CCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHH---HhCCCCeEEEecCCHHHHHHHHHHHHHCC
Q 029386 80 LKLALVVRQDL----KMGSGKIASQCAHAATGMYAELMQSDRHLLRKW---EQCGQPKIVVTCKNQQEMNKLWEVAENTG 152 (194)
Q Consensus 80 ~kmVlVVR~DL----~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W---~~~G~~KIVLk~~~e~eL~~L~~~A~~~g 152 (194)
+.||||||+|| +|++||+||||||||+++|+. .+++++.+++| ..+||+||||+|+||+||.+|.++|++.|
T Consensus 1 ~vq~ivVR~DL~~~~~m~kGkiaAQ~aHAav~a~~~-~~~~~~~~~~~~~~~~~g~~KVVLkv~~e~eL~~L~~~a~~~g 79 (116)
T cd02429 1 LVQYVILRRDLQTKLSWPLGAVIAQACHAAVAVIHL-FRSDPDTKKYAYLSNLDNMHKVVLEVPDEAALKNLSSKLTENS 79 (116)
T ss_pred CEEEEEEeccccccCCCCccHHHHHHHHHHHHHHHH-HhhCchHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHcC
Confidence 47999999999 999999999999999999865 45678876666 23899999999999999999999999999
Q ss_pred CCeEEEEcCCCCcccCCCeeEEEecCCCccchhhhcCCCCCC
Q 029386 153 LPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194 (194)
Q Consensus 153 lp~~~V~DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl 194 (194)
|++++| ||+||||.|||||||+|++.||++|||||||
T Consensus 80 i~~~l~-----te~p~gt~T~LaigP~~~~~id~it~~LkLl 116 (116)
T cd02429 80 IKHKLW-----IEQPENIPTCIALKPYPKETVASYLKKLKLL 116 (116)
T ss_pred CCeEEE-----EEcCCCCceEEEeCCCCHHHHHHHhCCCcCC
Confidence 999997 8999999999999999999999999999997
No 9
>KOG3305 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=6.7e-20 Score=140.36 Aligned_cols=112 Identities=21% Similarity=0.261 Sum_probs=100.4
Q ss_pred CCCeeEEEEEeCCC----CCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHH---hCCCCeEEEecCCHHHHHHHHHHHH
Q 029386 77 DQDLKLALVVRQDL----KMGSGKIASQCAHAATGMYAELMQSDRHLLRKWE---QCGQPKIVVTCKNQQEMNKLWEVAE 149 (194)
Q Consensus 77 ~~~~kmVlVVR~DL----~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~---~~G~~KIVLk~~~e~eL~~L~~~A~ 149 (194)
++.+.||||+|+|| .|+.|.+++|.|||+.++.+. .+.++..+.+-. .+.|+||+|++++|..|..|.++.+
T Consensus 1 ~~~ivqyivlr~dl~~alswplgaviaq~chas~a~i~~-~~dd~~tl~y~dpq~id~mhkv~le~k~es~lm~lseklk 79 (121)
T KOG3305|consen 1 DDNIVQYIVLRRDLIDALSWPLGAVIAQGCHASAAAIHL-FKDDADTLAYCDPQDIDNMHKVTLEAKDESALMKLSEKLK 79 (121)
T ss_pred CCcceeEeeehHhhhhhccCchhHHHHhhhhHHHHHHHh-ccCCcchhhcCChhhhhhhhheeeeecChHHHHhHHHHHh
Confidence 36789999999998 689999999999999998864 456776664432 3789999999999999999999999
Q ss_pred HCCCCeEEEEcCCCCcccCCCeeEEEecCCCccchhhhcCCCCCC
Q 029386 150 NTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 194 (194)
Q Consensus 150 ~~glp~~~V~DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl 194 (194)
..+|.+.+|. |+|++..||||+.|+|++.+.++.+||||+
T Consensus 80 ~~~i~hklwi-----eqpeniptcia~kpy~k~~v~~f~k~lkl~ 119 (121)
T KOG3305|consen 80 EGEIKHKLWI-----EQPENIPTCIALKPYPKDQVHKFFKHLKLC 119 (121)
T ss_pred cCCchhhhhh-----cCccCCCceeecCCCcHHHHHHHHHHHHhh
Confidence 9999999998 899999999999999999999999999985
No 10
>PF09391 DUF2000: Protein of unknown function (DUF2000); InterPro: IPR018988 This is a family of proteins of unknown function. The structure of one of the proteins in this family has been shown to adopt an alpha beta fold. ; PDB: 2GAX_A.
Probab=98.13 E-value=5.9e-06 Score=66.22 Aligned_cols=109 Identities=25% Similarity=0.325 Sum_probs=75.2
Q ss_pred CeeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHH---------HHHH-hCCCCeEEEecCCHHHHHHHHHHH
Q 029386 79 DLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLL---------RKWE-QCGQPKIVVTCKNQQEMNKLWEVA 148 (194)
Q Consensus 79 ~~kmVlVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l---------~~W~-~~G~~KIVLk~~~e~eL~~L~~~A 148 (194)
+.|.|+||+.||. .|.++-=+||-+++.-... |+.+ ..|. ...++-+||+. |.++|.+|.++|
T Consensus 1 d~K~viVv~~~Lp--~g~~~NaaA~L~~~Lg~~~----p~l~G~~~~D~~g~~h~gi~~~PipIL~a-~~~~L~~l~~~a 73 (133)
T PF09391_consen 1 DTKCVIVVDEDLP--PGLAANAAAVLGLGLGAAH----PELVGEDYRDADGNAHPGISHIPIPILKA-NSEQLRELRQKA 73 (133)
T ss_dssp SEEEEEEEETTS---HHHHHHHHHHHHHHHHHH-----GGGB-S-EE-TTS-EE---BSS-EEEEEE--HHHHHHHHHHH
T ss_pred CcEEEEEECCCCh--HHHHHHHHHHHHHHHhccC----ccccCCcccCCCCCCCCCCCCcCeEEEEc-CHHHHHHHHHHH
Confidence 4799999999987 8899999999988866532 2221 1111 24689999999 679999999999
Q ss_pred HHCCCCeEEEEcCCC------------CcccCCCeeEEEec-CCCccchhhhcCCCCCC
Q 029386 149 ENTGLPTFVVADAGR------------TQVSAGSKTVLAIG-PGPKSLVDSVTGKQRLL 194 (194)
Q Consensus 149 ~~~glp~~~V~DAGr------------Tev~pgs~TvlAIG-P~p~~~Id~iTg~LKLl 194 (194)
.+.++.+....|..+ -+.++.....++|+ -+|+..|+++||+|+||
T Consensus 74 ~~~~i~~~~F~~~aq~~~~y~e~~~~~~~~~~~~l~y~Gi~L~G~kk~V~kltg~l~L~ 132 (133)
T PF09391_consen 74 LEREITVVDFTDEAQSTGHYEEYRAAVAATPEEDLEYVGIALFGPKKAVDKLTGSLPLL 132 (133)
T ss_dssp HHTT---EEEEGGGGG---HHHHHHHHTT--TTT--EEEEEEEEEHHHHHHHCTT-EE-
T ss_pred HHCCCeEEeChHHHhhCCCHHHHHHHHhcCChhhccEEEEEEECCHHHHHHHhcCCCCC
Confidence 999998888887765 23445667777776 68899999999999986
No 11
>COG4954 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.12 E-value=0.66 Score=36.84 Aligned_cols=67 Identities=22% Similarity=0.315 Sum_probs=52.2
Q ss_pred CCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcC--------C----CCcccCCCeeEEEec-CCCccchhhhcCCCC
Q 029386 126 CGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADA--------G----RTQVSAGSKTVLAIG-PGPKSLVDSVTGKQR 192 (194)
Q Consensus 126 ~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V~DA--------G----rTev~pgs~TvlAIG-P~p~~~Id~iTg~LK 192 (194)
+=|+.|||.. |++.|..+-..|-++++++.+-.+. - +.|..|.+.-|++|. -+.+..+|+||+.-|
T Consensus 54 siqpvivls~-dqetl~aihrraler~vttslyieemfstghdaanravfa~f~pd~akvvgialraekkivdkitkgar 132 (135)
T COG4954 54 SIQPVIVLSG-DQETLKAIHRRALERKVTTSLYIEEMFSTGHDAANRAVFAEFGPDSAKVVGIALRAEKKIVDKITKGAR 132 (135)
T ss_pred ccceEEEEeC-CHHHHHHHHHHHHhcCCCcceeHHHHHhccchHHHHHHHHhhCCCcceeeeeehhhhhHHHHHHccccc
Confidence 3478888754 6899999999999999998876532 1 256778888888775 567888999999876
Q ss_pred C
Q 029386 193 L 193 (194)
Q Consensus 193 L 193 (194)
+
T Consensus 133 m 133 (135)
T COG4954 133 M 133 (135)
T ss_pred c
Confidence 5
No 12
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.42 E-value=2.1 Score=33.94 Aligned_cols=19 Identities=42% Similarity=0.768 Sum_probs=17.1
Q ss_pred CCccchhhHHHHhhhhhhc
Q 029386 30 ENFIPGLVIGFIFGMLLDL 48 (194)
Q Consensus 30 ~~~~~g~~~g~~~g~~~~~ 48 (194)
..||.|+++|.++|+++|-
T Consensus 50 sefIsGilVGa~iG~llD~ 68 (116)
T COG5336 50 SEFISGILVGAGIGWLLDK 68 (116)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999984
No 13
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=65.60 E-value=3.1 Score=32.87 Aligned_cols=13 Identities=54% Similarity=1.104 Sum_probs=7.2
Q ss_pred chhhHHHHhhhhh
Q 029386 34 PGLVIGFIFGMLL 46 (194)
Q Consensus 34 ~g~~~g~~~g~~~ 46 (194)
.|+||||+||+++
T Consensus 4 i~lvvG~iiG~~~ 16 (128)
T PF06295_consen 4 IGLVVGLIIGFLI 16 (128)
T ss_pred HHHHHHHHHHHHH
Confidence 4556666666444
No 14
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=63.82 E-value=11 Score=28.63 Aligned_cols=86 Identities=16% Similarity=0.299 Sum_probs=49.1
Q ss_pred EEEEEeCCCCCChhhHHHHhhHH--HHHHHHHHhhhCHHHHHHHHhCCC--CeEEEecCCHHHHHHHHHHHHHCCCCeEE
Q 029386 82 LALVVRQDLKMGSGKIASQCAHA--ATGMYAELMQSDRHLLRKWEQCGQ--PKIVVTCKNQQEMNKLWEVAENTGLPTFV 157 (194)
Q Consensus 82 mVlVVR~DL~Ms~GKiAAQ~aHA--Av~a~~~~~~~~~~~l~~W~~~G~--~KIVLk~~~e~eL~~L~~~A~~~glp~~~ 157 (194)
|-+.|+.+...+.+--+++..-. .-.+|..-.++.-.+..-|+-.|+ .-.+..++|.+||.++.. ++|-+-
T Consensus 1 Mlflv~m~v~~P~~~~~~~~~~~~a~E~~~a~eLq~~G~~~~lWr~~G~~~n~~Ifdv~d~~eLh~lL~-----sLPL~p 75 (91)
T PF02426_consen 1 MLFLVRMTVNVPPDMPPEEVDRLKAREKARAQELQRQGKWRHLWRVVGRYANVSIFDVEDNDELHELLS-----SLPLFP 75 (91)
T ss_pred CeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeEEEEecCCcceEEEEECCCHHHHHHHHH-----hCCCcc
Confidence 45677777776655444443221 111221111223334556876554 345778999999999876 788887
Q ss_pred EEcCCCCcccCCCeeEEEecCCCcc
Q 029386 158 VADAGRTQVSAGSKTVLAIGPGPKS 182 (194)
Q Consensus 158 V~DAGrTev~pgs~TvlAIGP~p~~ 182 (194)
+.| ++|..+.+-|.+
T Consensus 76 ~m~----------i~VtpL~~Hps~ 90 (91)
T PF02426_consen 76 YMD----------IEVTPLARHPSD 90 (91)
T ss_pred cee----------eeEEecccCCCC
Confidence 764 455555555443
No 15
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=60.72 E-value=14 Score=32.82 Aligned_cols=37 Identities=11% Similarity=0.319 Sum_probs=32.5
Q ss_pred HHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEE
Q 029386 122 KWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVV 158 (194)
Q Consensus 122 ~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V 158 (194)
.|+-.|.++.++.+.+.+|+.++.+.|++.++|++++
T Consensus 6 t~~igg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vl 42 (284)
T TIGR00179 6 TYKIGGNARHIVCPESIEQLVNVLDNAKEEDQPLLIL 42 (284)
T ss_pred eeecCceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4556889999999999999999999999999997753
No 16
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=59.84 E-value=3.9 Score=32.31 Aligned_cols=17 Identities=41% Similarity=0.919 Sum_probs=14.9
Q ss_pred CccchhhHHHHhhhhhh
Q 029386 31 NFIPGLVIGFIFGMLLD 47 (194)
Q Consensus 31 ~~~~g~~~g~~~g~~~~ 47 (194)
.|+.|+||||+++.+..
T Consensus 5 ~lvvG~iiG~~~~r~~~ 21 (128)
T PF06295_consen 5 GLVVGLIIGFLIGRLTS 21 (128)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 48899999999998875
No 17
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=57.80 E-value=66 Score=27.57 Aligned_cols=44 Identities=30% Similarity=0.437 Sum_probs=32.1
Q ss_pred HHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHC-CCCeEEEEc
Q 029386 117 RHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENT-GLPTFVVAD 160 (194)
Q Consensus 117 ~~~l~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~-glp~~~V~D 160 (194)
.+..+.|+..|..-+.+...|.++|.+..++|.+. +-|++++++
T Consensus 181 ~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~~~ 225 (255)
T cd02012 181 EDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIAK 225 (255)
T ss_pred hhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 45567788889876554444999999988888765 668877763
No 18
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=56.16 E-value=19 Score=32.32 Aligned_cols=42 Identities=14% Similarity=0.285 Sum_probs=34.9
Q ss_pred HHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCC
Q 029386 121 RKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGR 163 (194)
Q Consensus 121 ~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V~DAGr 163 (194)
..|.-.|.+..++.+.|++++.++.+.|++.++|+++ +-.|.
T Consensus 28 tt~~igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~v-lGgGS 69 (302)
T PRK14652 28 TAVRVGGPADLLVRPADPDALSALLRAVRELGVPLSI-LGGGA 69 (302)
T ss_pred cEeecCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEE-EcCCc
Confidence 4567789999999999999999999999999998765 34443
No 19
>PRK11677 hypothetical protein; Provisional
Probab=56.15 E-value=4.6 Score=32.64 Aligned_cols=14 Identities=21% Similarity=0.517 Sum_probs=6.6
Q ss_pred ccchhhHHHHhhhh
Q 029386 32 FIPGLVIGFIFGML 45 (194)
Q Consensus 32 ~~~g~~~g~~~g~~ 45 (194)
|+.|+||||+++.+
T Consensus 10 livG~iiG~~~~R~ 23 (134)
T PRK11677 10 LVVGIIIGAVAMRF 23 (134)
T ss_pred HHHHHHHHHHHHhh
Confidence 44444444444443
No 20
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=55.87 E-value=40 Score=29.99 Aligned_cols=43 Identities=33% Similarity=0.482 Sum_probs=36.5
Q ss_pred HHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHH-CCCCeEEEEc
Q 029386 118 HLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAEN-TGLPTFVVAD 160 (194)
Q Consensus 118 ~~l~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~-~glp~~~V~D 160 (194)
++-..|+.-|...+-++..|.+++.+-.++++. .|-|+++|.|
T Consensus 196 pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~~~rP~~IIa~ 239 (243)
T COG3959 196 PLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGSKGRPTVIIAK 239 (243)
T ss_pred hhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhccCCCCeEEEEe
Confidence 456899999999998888999999997777766 4589999987
No 21
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=53.29 E-value=21 Score=33.84 Aligned_cols=51 Identities=25% Similarity=0.385 Sum_probs=35.7
Q ss_pred HHHHHH-HHHHHHHCCCCeEEEEcCCCCcccCCCeeEEEecCCCccc----hhhhcCC
Q 029386 138 QQEMNK-LWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSL----VDSVTGK 190 (194)
Q Consensus 138 e~eL~~-L~~~A~~~glp~~~V~DAGrTev~pgs~TvlAIGP~p~~~----Id~iTg~ 190 (194)
.+.+.+ +.++.+.+ |...|+.-..|++||.-+||||.||-.++. |..+||.
T Consensus 99 R~~Fs~~vT~~l~~h--pli~vireEvt~iP~dg~~vIATGPLTs~~La~~i~~ltG~ 154 (439)
T COG1206 99 RDGFSQAVTEKLENH--PLIEVIREEVTEIPPDGITVIATGPLTSDALAEKIKELTGE 154 (439)
T ss_pred HhHHHHHHHHHHhcC--CCEEEEccccccCCCCCcEEEecCCCCCHHHHHHHHHhhCC
Confidence 444444 55555544 556777778899999899999999987654 5555653
No 22
>TIGR00942 2a6301s05 Monovalent Cation (K+ or Na+):Proton Antiporter-3 (CPA3) subfamily.
Probab=51.06 E-value=5.5 Score=31.97 Aligned_cols=24 Identities=17% Similarity=0.425 Sum_probs=21.1
Q ss_pred eeeeccCCCccchhhHHHHhhhhh
Q 029386 23 LAVSFRPENFIPGLVIGFIFGMLL 46 (194)
Q Consensus 23 ~~~~~~~~~~~~g~~~g~~~g~~~ 46 (194)
|.++|.|.+|+-|+++|+++.++.
T Consensus 4 L~g~~s~~~l~~G~vv~l~v~~~~ 27 (144)
T TIGR00942 4 VTQSVTPGSIVLGLIFSTVLAWVT 27 (144)
T ss_pred EECCCCHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999766
No 23
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=50.94 E-value=28 Score=31.76 Aligned_cols=42 Identities=26% Similarity=0.388 Sum_probs=34.0
Q ss_pred HHHHHHhCCCCeEEE-ecCCHHHHHHHHHHHHHC-CCCeEEEEc
Q 029386 119 LLRKWEQCGQPKIVV-TCKNQQEMNKLWEVAENT-GLPTFVVAD 160 (194)
Q Consensus 119 ~l~~W~~~G~~KIVL-k~~~e~eL~~L~~~A~~~-glp~~~V~D 160 (194)
..++|+..|...+.+ ...|.+++.+..+.|+.. +-|+++|++
T Consensus 198 ~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~~~~kP~~Ii~~ 241 (332)
T PF00456_consen 198 IAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKASKGKPTVIIAR 241 (332)
T ss_dssp HHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHHSTSS-EEEEEE
T ss_pred HHHHHHHhhhhhcccccCcHHHHHHHHHHHHHhcCCCCceeecc
Confidence 467899999988887 778999999988888876 889999984
No 24
>COG1863 MnhE Multisubunit Na+/H+ antiporter, MnhE subunit [Inorganic ion transport and metabolism]
Probab=50.03 E-value=4.4 Score=33.52 Aligned_cols=23 Identities=43% Similarity=0.739 Sum_probs=20.4
Q ss_pred eeeccCCCccchhhHHHHhhhhh
Q 029386 24 AVSFRPENFIPGLVIGFIFGMLL 46 (194)
Q Consensus 24 ~~~~~~~~~~~g~~~g~~~g~~~ 46 (194)
++||++.+|+-|+++|+++.++.
T Consensus 19 ~~s~s~~~~i~G~ivg~iv~~~~ 41 (158)
T COG1863 19 TGSFSPANLILGFIVGAIVLLLL 41 (158)
T ss_pred hCcccHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999776
No 25
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=49.79 E-value=7.6 Score=27.80 Aligned_cols=15 Identities=40% Similarity=0.651 Sum_probs=9.2
Q ss_pred ccchhhHHHHhhhhh
Q 029386 32 FIPGLVIGFIFGMLL 46 (194)
Q Consensus 32 ~~~g~~~g~~~g~~~ 46 (194)
|+.|+++||+++.+|
T Consensus 7 li~G~~~Gff~ar~~ 21 (64)
T PF03672_consen 7 LIVGAVIGFFIARKY 21 (64)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666666666444
No 26
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=49.21 E-value=28 Score=31.27 Aligned_cols=39 Identities=18% Similarity=0.311 Sum_probs=32.5
Q ss_pred HHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCC
Q 029386 123 WEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAG 162 (194)
Q Consensus 123 W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V~DAG 162 (194)
|.-.|.+.+++.+.+++++.++.+.|++.++|+++ +-.|
T Consensus 31 ~~igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v-~GgG 69 (305)
T PRK12436 31 IKVGGKADVFVAPTNYDEIQEVIKYANKYNIPVTF-LGNG 69 (305)
T ss_pred cccCceEEEEEecCCHHHHHHHHHHHHHcCCCEEE-EcCC
Confidence 34578899999999999999999999999999765 3343
No 27
>PRK11677 hypothetical protein; Provisional
Probab=48.63 E-value=8.7 Score=31.06 Aligned_cols=15 Identities=40% Similarity=0.742 Sum_probs=13.2
Q ss_pred cchhhHHHHhhhhhh
Q 029386 33 IPGLVIGFIFGMLLD 47 (194)
Q Consensus 33 ~~g~~~g~~~g~~~~ 47 (194)
+.|+|||++||+++.
T Consensus 7 ~i~livG~iiG~~~~ 21 (134)
T PRK11677 7 LIGLVVGIIIGAVAM 21 (134)
T ss_pred HHHHHHHHHHHHHHH
Confidence 579999999998885
No 28
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=48.63 E-value=27 Score=31.41 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=31.6
Q ss_pred HHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEE
Q 029386 122 KWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFV 157 (194)
Q Consensus 122 ~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~ 157 (194)
.|.-.|.+..++.+.+++++.++.+.|++.++|+++
T Consensus 30 t~~iGG~A~~~v~p~~~edv~~~v~~a~~~~ip~~v 65 (307)
T PRK13906 30 YTKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTY 65 (307)
T ss_pred EcCcCceeEEEEEcCCHHHHHHHHHHHHHcCCCEEE
Confidence 445578899999999999999999999999999764
No 29
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=47.82 E-value=28 Score=30.88 Aligned_cols=42 Identities=12% Similarity=0.324 Sum_probs=34.7
Q ss_pred HHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCC
Q 029386 121 RKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGR 163 (194)
Q Consensus 121 ~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V~DAGr 163 (194)
..|.-.|.+..++...+++|+.++.+.|++.++|+.+ +-.|.
T Consensus 23 ~t~~igg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v-~GgGs 64 (298)
T PRK13905 23 TSFRVGGPADYLVEPADIEDLQEFLKLLKENNIPVTV-LGNGS 64 (298)
T ss_pred ceeecCceEeEEEeCCCHHHHHHHHHHHHHcCCCEEE-EeCCc
Confidence 4566788999999999999999999999999998665 44443
No 30
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=46.19 E-value=30 Score=30.88 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=32.6
Q ss_pred HHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEE
Q 029386 121 RKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFV 157 (194)
Q Consensus 121 ~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~ 157 (194)
..|.-.|.+...+.+.+.++|.++.+.+++.++|+.+
T Consensus 13 tt~~iGg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~v 49 (295)
T PRK14649 13 TSWRIGGPARYFVEPTTPDEAIAAAAWAEQRQLPLFW 49 (295)
T ss_pred cEeeeCceeeEEEEcCCHHHHHHHHHHHHHCCCCEEE
Confidence 3556789999999999999999999999999999775
No 31
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=44.75 E-value=1.2e+02 Score=26.83 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=19.0
Q ss_pred CCCC-CChhhHHHHhhHHHHHHHHHH
Q 029386 88 QDLK-MGSGKIASQCAHAATGMYAEL 112 (194)
Q Consensus 88 ~DL~-Ms~GKiAAQ~aHAAv~a~~~~ 112 (194)
-|++ ++-+.-..|+.+.+...|+++
T Consensus 78 aD~~fg~y~~~~~~av~~a~r~~~~a 103 (254)
T cd06557 78 ADMPFGSYQTSPEQALRNAARLMKEA 103 (254)
T ss_pred EeCCCCcccCCHHHHHHHHHHHHHHh
Confidence 6887 567777888888888877743
No 32
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=43.78 E-value=36 Score=25.77 Aligned_cols=36 Identities=25% Similarity=0.387 Sum_probs=29.1
Q ss_pred eEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCCcc
Q 029386 130 KIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQV 166 (194)
Q Consensus 130 KIVLk~~~e~eL~~L~~~A~~~glp~~~V~DAGrTev 166 (194)
..|+...+++|+.++.+.|.+.+++. .++-.|..-.
T Consensus 2 ~~vv~P~s~~ev~~~v~~a~~~~~~v-~~~g~G~~~~ 37 (139)
T PF01565_consen 2 AAVVRPKSVEEVQAIVKFANENGVPV-RVRGGGHSWT 37 (139)
T ss_dssp SEEEEESSHHHHHHHHHHHHHTTSEE-EEESSSTTSS
T ss_pred cEEEEeCCHHHHHHHHHHHHHcCCcE-EEEcCCCCcc
Confidence 56889999999999999999999864 4667776433
No 33
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=43.71 E-value=38 Score=31.44 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=32.8
Q ss_pred HHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEE
Q 029386 121 RKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFV 157 (194)
Q Consensus 121 ~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~ 157 (194)
..|.-.|.+..++.+.|++++.++.+.++..++|+.+
T Consensus 25 tt~~iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~v 61 (363)
T PRK13903 25 TTLRVGGPARRLVTCTSTEELVAAVRELDAAGEPLLV 61 (363)
T ss_pred cEeecCccceEEEEeCCHHHHHHHHHHHHHCCCCEEE
Confidence 4566789999999999999999999999999999775
No 34
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=43.61 E-value=2.1e+02 Score=24.39 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=41.1
Q ss_pred HHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCCcccCCCeeEEEe
Q 029386 119 LLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAI 176 (194)
Q Consensus 119 ~l~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V~DAGrTev~pgs~TvlAI 176 (194)
.+..-...|...-++.+++ +.|.++...|+..||.|+++.|-. -.||...|+.-
T Consensus 23 slk~L~k~g~~l~~i~i~~-~~lk~F~k~AkKyGV~yav~kdk~---~~~~~~~V~Fk 76 (204)
T PF12687_consen 23 SLKKLLKQGKGLKNIEITD-EDLKEFKKEAKKYGVDYAVKKDKS---TGPGKYDVFFK 76 (204)
T ss_pred eHHHHHhcCCCceEEecCH-hhHHHHHHHHHHcCCceEEeeccC---CCCCcEEEEEE
Confidence 4555556788788888985 689999999999999999999863 44565555544
No 35
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=42.99 E-value=34 Score=31.42 Aligned_cols=37 Identities=16% Similarity=0.331 Sum_probs=33.2
Q ss_pred HHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEE
Q 029386 121 RKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFV 157 (194)
Q Consensus 121 ~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~ 157 (194)
..|+-.|.+...+...|.++|.++.+.+++.++|+++
T Consensus 13 tt~riGG~A~~~~~p~~~~el~~~~~~~~~~~~p~~v 49 (334)
T PRK00046 13 NTFGIDARARHLVEAESEEQLLEALADARAAGLPVLV 49 (334)
T ss_pred ceeccCcEEeEEEeeCCHHHHHHHHHHHHHcCCCEEE
Confidence 4567789999999999999999999999999999875
No 36
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.30 E-value=17 Score=29.69 Aligned_cols=13 Identities=54% Similarity=1.020 Sum_probs=9.4
Q ss_pred chhhHHHHhhhhh
Q 029386 34 PGLVIGFIFGMLL 46 (194)
Q Consensus 34 ~g~~~g~~~g~~~ 46 (194)
-|||||++||++.
T Consensus 13 igLvvGi~IG~li 25 (138)
T COG3105 13 IGLVVGIIIGALI 25 (138)
T ss_pred HHHHHHHHHHHHH
Confidence 4788888888544
No 37
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=39.95 E-value=26 Score=31.47 Aligned_cols=65 Identities=18% Similarity=0.279 Sum_probs=42.0
Q ss_pred HhCCCCeEEEecCCHHHHH--H-HHHHHHHCCCCeEEEEcCCCCcccCC--CeeEEEe---cCCCccchhhhc
Q 029386 124 EQCGQPKIVVTCKNQQEMN--K-LWEVAENTGLPTFVVADAGRTQVSAG--SKTVLAI---GPGPKSLVDSVT 188 (194)
Q Consensus 124 ~~~G~~KIVLk~~~e~eL~--~-L~~~A~~~glp~~~V~DAGrTev~pg--s~TvlAI---GP~p~~~Id~iT 188 (194)
.+.+..+.|+-..|-++.+ . |...+++.+||++.|-+.-+=-..-| +.||+|| |+.....++.++
T Consensus 144 IekkKAkLVIIA~DVsPie~vk~LpaLCrk~~VPY~iVktKaeLG~AIGkKtravVAItD~g~ed~~~l~~lv 216 (263)
T PTZ00222 144 IEKKQARMVVIANNVDPVELVLWMPNLCRANKIPYAIVKDMARLGDAIGRKTATCVAITDVNAEDEAALKNLI 216 (263)
T ss_pred HHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHHHHHHCCCCCeEEEEeeCCcccHHHHHHHH
Confidence 3568888898888854443 3 77889999999998875421000112 4677775 666666666554
No 38
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=39.67 E-value=70 Score=23.59 Aligned_cols=39 Identities=13% Similarity=0.193 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHCCCCeEEEEcCCCCcccCCCeeEEEec
Q 029386 139 QEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIG 177 (194)
Q Consensus 139 ~eL~~L~~~A~~~glp~~~V~DAGrTev~pgs~TvlAIG 177 (194)
.++.+..+.|++.|.++..|.+...+.+..-+--++-+.
T Consensus 60 ~e~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~ 98 (126)
T cd05008 60 ADTLAALRLAKEKGAKTVAITNVVGSTLAREADYVLYLR 98 (126)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEec
Confidence 578899999999999999999987777766555566663
No 39
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=39.62 E-value=39 Score=30.63 Aligned_cols=37 Identities=16% Similarity=0.355 Sum_probs=32.7
Q ss_pred HHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEE
Q 029386 121 RKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFV 157 (194)
Q Consensus 121 ~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~ 157 (194)
..|.-.|.+...+...|.++|.++.+.++..++|+++
T Consensus 25 tt~~iGG~A~~~~~p~~~~eL~~~l~~~~~~~~p~~v 61 (302)
T PRK14650 25 TTYKIGGISKLFLTPKTIKDAEHIFKAAIEEKIKIFI 61 (302)
T ss_pred ceeeeCcEEEEEEecCCHHHHHHHHHHHHHcCCCEEE
Confidence 4566789999999999999999999999999999775
No 40
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=38.68 E-value=3.5e+02 Score=26.67 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=31.1
Q ss_pred HHhCCCCeE-EEecCCHHHHHHHHHHHHHCCCCeEEEEc
Q 029386 123 WEQCGQPKI-VVTCKNQQEMNKLWEVAENTGLPTFVVAD 160 (194)
Q Consensus 123 W~~~G~~KI-VLk~~~e~eL~~L~~~A~~~glp~~~V~D 160 (194)
|+.-|..-+ .+-..|.++|.+..+.++..+=|+.+++.
T Consensus 234 f~~~G~~~~~~vDGhd~~~l~~al~~ak~~~~P~~i~~~ 272 (617)
T TIGR00204 234 FEELGFNYIGPVDGHDLLELIETLKNAKKLKGPVFLHIQ 272 (617)
T ss_pred HHHcCCcEEcccCCCCHHHHHHHHHHHhcCCCCEEEEEE
Confidence 888999777 67888999999998888865448888773
No 41
>PRK08382 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=38.63 E-value=8.9 Score=32.89 Aligned_cols=24 Identities=17% Similarity=0.409 Sum_probs=21.0
Q ss_pred eeeeccCCCccchhhHHHHhhhhh
Q 029386 23 LAVSFRPENFIPGLVIGFIFGMLL 46 (194)
Q Consensus 23 ~~~~~~~~~~~~g~~~g~~~g~~~ 46 (194)
|+++|.+.+|+-|+++|++++++.
T Consensus 49 Lsg~~s~~~l~lG~i~~~~v~~l~ 72 (201)
T PRK08382 49 ISGDLSPRGLILGALTTLIIASYM 72 (201)
T ss_pred HhCCcCHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999766
No 42
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=38.48 E-value=15 Score=30.86 Aligned_cols=15 Identities=33% Similarity=0.642 Sum_probs=12.1
Q ss_pred cchhhHHHHhhhhhh
Q 029386 33 IPGLVIGFIFGMLLD 47 (194)
Q Consensus 33 ~~g~~~g~~~g~~~~ 47 (194)
+-|++|||++||++.
T Consensus 7 i~~~~vG~~~G~~~~ 21 (201)
T PF12072_consen 7 IVALIVGIGIGYLVR 21 (201)
T ss_pred HHHHHHHHHHHHHHH
Confidence 457889999998884
No 43
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=38.15 E-value=1e+02 Score=31.18 Aligned_cols=52 Identities=25% Similarity=0.451 Sum_probs=42.2
Q ss_pred HHHHHHHHhCCCCeE-EEecCCHHHHHHHHHHHHH-CCCCeEEEEcCCCCcccCCCeeEEEecCC
Q 029386 117 RHLLRKWEQCGQPKI-VVTCKNQQEMNKLWEVAEN-TGLPTFVVADAGRTQVSAGSKTVLAIGPG 179 (194)
Q Consensus 117 ~~~l~~W~~~G~~KI-VLk~~~e~eL~~L~~~A~~-~glp~~~V~DAGrTev~pgs~TvlAIGP~ 179 (194)
.+..++++..|...+ +....|.+++.+..++|+. ..-|+.+++ .|+|+.|--
T Consensus 201 ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~~~dkPtlI~~-----------kTiIG~Gsp 254 (663)
T COG0021 201 EDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKASTDKPTLIIV-----------KTIIGKGSP 254 (663)
T ss_pred hhHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCCeEEEE-----------EeeeecCCC
Confidence 456788999999988 7777889999999999987 557888887 688888743
No 44
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=37.68 E-value=31 Score=33.96 Aligned_cols=43 Identities=23% Similarity=0.397 Sum_probs=33.7
Q ss_pred ecCCHHHHHHHHHHHHHCCCCeEEEEc-----CCCCcccCCCeeEEEe
Q 029386 134 TCKNQQEMNKLWEVAENTGLPTFVVAD-----AGRTQVSAGSKTVLAI 176 (194)
Q Consensus 134 k~~~e~eL~~L~~~A~~~glp~~~V~D-----AGrTev~pgs~TvlAI 176 (194)
.+++.+.+-.=+..+...|+|+++++| .|-.|+..||+||---
T Consensus 469 ~~DdsesIGKKyRraDeiGiPy~ITVD~~Tl~dGdkE~e~gTVTVR~R 516 (539)
T PRK14894 469 VYDDTGAIGKLYRRQDEIGTPFCITVDFDTIGQGKDPALAGTVTVRDR 516 (539)
T ss_pred EEcCCCCHhHHHHhhhccCCCEEEEEeccccccccchhhcCeEEEEEe
Confidence 344445788888889999999999997 4556788899998654
No 45
>PRK10132 hypothetical protein; Provisional
Probab=36.83 E-value=13 Score=28.86 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=17.3
Q ss_pred hcccceeeeccCCCccchhhHHHHhhhhhh
Q 029386 18 QEKVSLAVSFRPENFIPGLVIGFIFGMLLD 47 (194)
Q Consensus 18 ~~~~~~~~~~~~~~~~~g~~~g~~~g~~~~ 47 (194)
.+.||-++.+ +..+||++|+++.
T Consensus 83 ~~~Pw~svgi-------aagvG~llG~Ll~ 105 (108)
T PRK10132 83 RERPWCSVGT-------AAAVGIFIGALLS 105 (108)
T ss_pred HhCcHHHHHH-------HHHHHHHHHHHHh
Confidence 3568988875 6778999998763
No 46
>PRK01844 hypothetical protein; Provisional
Probab=35.59 E-value=6.1 Score=28.95 Aligned_cols=16 Identities=19% Similarity=0.598 Sum_probs=9.4
Q ss_pred CccchhhHHHHhhhhh
Q 029386 31 NFIPGLVIGFIFGMLL 46 (194)
Q Consensus 31 ~~~~g~~~g~~~g~~~ 46 (194)
.++.|+++||+++.++
T Consensus 13 ~li~G~~~Gff~ark~ 28 (72)
T PRK01844 13 ALVAGVALGFFIARKY 28 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556666666666443
No 47
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=35.42 E-value=72 Score=21.50 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=19.5
Q ss_pred EEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCCc
Q 029386 131 IVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQ 165 (194)
Q Consensus 131 IVLk~~~e~eL~~L~~~A~~~glp~~~V~DAGrTe 165 (194)
-+.++.|.-+..-+...+++.||++++ .|.+...
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v-~~~~~~~ 35 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFV-KNEHMSG 35 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE---S----S
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEE-ECCccch
Confidence 456888888888899999999998764 6655433
No 48
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=34.55 E-value=1.3e+02 Score=31.47 Aligned_cols=58 Identities=17% Similarity=0.320 Sum_probs=40.1
Q ss_pred HHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCCcccCCCeeEEEecCCC
Q 029386 119 LLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGP 180 (194)
Q Consensus 119 ~l~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V~DAGrTev~pgs~TvlAIGP~p 180 (194)
.+..|...|. +|++-|.++.+...+.+..++.+++...+-+.+ .++++. ..+.+||-.
T Consensus 228 ~~~~~~~~~~-~vii~~~s~~~~~~l~~~l~~~~~~~~~~~~~~--~~~~~~-~~~~~~~l~ 285 (926)
T TIGR00580 228 ELFRWLKAGF-KITVAAESESQAERLKSLLAEHDIAAQVIDESC--IIIPAV-RYVMIGALS 285 (926)
T ss_pred HHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHCCCCceecCchh--ccCCCe-EEEEEecCC
Confidence 4678887764 688889999999999999999999766552222 334443 445555543
No 49
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=34.44 E-value=53 Score=30.59 Aligned_cols=37 Identities=14% Similarity=0.210 Sum_probs=33.0
Q ss_pred HHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEE
Q 029386 121 RKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFV 157 (194)
Q Consensus 121 ~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~ 157 (194)
..|.-.|.+...+...+.++|.++.+.++..++|+++
T Consensus 22 tT~rIGG~A~~~~~p~s~~el~~~l~~~~~~~~p~~i 58 (354)
T PRK14648 22 CSFRIGGAAQFWAEPRSCTQLRALIEEAQRARIPLSL 58 (354)
T ss_pred ceeeeCcEEEEEEeeCCHHHHHHHHHHHHHcCCCEEE
Confidence 4566789999999999999999999999999999775
No 50
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=34.32 E-value=2e+02 Score=25.58 Aligned_cols=24 Identities=17% Similarity=0.105 Sum_probs=15.9
Q ss_pred CCCC-CChhhHHHHhhHHHHHHHHH
Q 029386 88 QDLK-MGSGKIASQCAHAATGMYAE 111 (194)
Q Consensus 88 ~DL~-Ms~GKiAAQ~aHAAv~a~~~ 111 (194)
-|++ ++-+.-..++.+-+...|++
T Consensus 81 aD~pfg~y~~~~~~av~~a~r~~~~ 105 (264)
T PRK00311 81 ADMPFGSYQASPEQALRNAGRLMKE 105 (264)
T ss_pred EeCCCCCccCCHHHHHHHHHHHHHH
Confidence 6777 45666667777777766654
No 51
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=34.22 E-value=1.1e+02 Score=22.48 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHCCCCeEEEEcCCCCcccCCCeeEEEe
Q 029386 139 QEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAI 176 (194)
Q Consensus 139 ~eL~~L~~~A~~~glp~~~V~DAGrTev~pgs~TvlAI 176 (194)
.++.++.+.|+++|+++..|.+...+++....-.++-+
T Consensus 61 ~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~ 98 (128)
T cd05014 61 DELLNLLPHLKRRGAPIIAITGNPNSTLAKLSDVVLDL 98 (128)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCCchhhhCCEEEEC
Confidence 67888999999999999999998888888776666665
No 52
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=34.17 E-value=17 Score=29.49 Aligned_cols=15 Identities=47% Similarity=1.045 Sum_probs=10.8
Q ss_pred ccchhhHHHHhhhhh
Q 029386 32 FIPGLVIGFIFGMLL 46 (194)
Q Consensus 32 ~~~g~~~g~~~g~~~ 46 (194)
|+-|+++||++|++-
T Consensus 92 lL~G~liGff~g~~~ 106 (140)
T PF13373_consen 92 LLWGLLIGFFFGLFS 106 (140)
T ss_pred HHHHHHHHHHHHHHh
Confidence 566888888888543
No 53
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=33.51 E-value=22 Score=25.11 Aligned_cols=16 Identities=31% Similarity=0.648 Sum_probs=9.1
Q ss_pred ccchhhHHHHhhhhhh
Q 029386 32 FIPGLVIGFIFGMLLD 47 (194)
Q Consensus 32 ~~~g~~~g~~~g~~~~ 47 (194)
|+.|.++|.++|+++.
T Consensus 5 ~l~Ga~~Ga~~glL~a 20 (74)
T PF12732_consen 5 FLAGAAAGAAAGLLFA 20 (74)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 4455555556666664
No 54
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.46 E-value=81 Score=22.50 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=25.2
Q ss_pred CCCCeEEEecCC-HHHHHHHHHHHHHCCCCeEE
Q 029386 126 CGQPKIVVTCKN-QQEMNKLWEVAENTGLPTFV 157 (194)
Q Consensus 126 ~G~~KIVLk~~~-e~eL~~L~~~A~~~glp~~~ 157 (194)
.+.-.+++++++ .+++.++.+..++.|..+..
T Consensus 39 ~~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~ 71 (85)
T cd04906 39 DAHIFVGVSVANGAEELAELLEDLKSAGYEVVD 71 (85)
T ss_pred eeEEEEEEEeCCcHHHHHHHHHHHHHCCCCeEE
Confidence 344556679999 99999999999999975443
No 55
>PRK00523 hypothetical protein; Provisional
Probab=31.85 E-value=22 Score=26.11 Aligned_cols=15 Identities=27% Similarity=0.578 Sum_probs=8.7
Q ss_pred ccchhhHHHHhhhhh
Q 029386 32 FIPGLVIGFIFGMLL 46 (194)
Q Consensus 32 ~~~g~~~g~~~g~~~ 46 (194)
++.|+++||+++.+|
T Consensus 15 li~G~~~Gffiark~ 29 (72)
T PRK00523 15 LIVGGIIGYFVSKKM 29 (72)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666666666443
No 56
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=31.64 E-value=53 Score=29.55 Aligned_cols=36 Identities=6% Similarity=0.159 Sum_probs=31.4
Q ss_pred HHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEE
Q 029386 122 KWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVV 158 (194)
Q Consensus 122 ~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V 158 (194)
.|+-.|.+..++...|.++|.++.+.++. ++|++++
T Consensus 27 t~~iGG~A~~~v~p~s~eel~~~~~~~~~-~~p~~vl 62 (297)
T PRK14653 27 SFKIGGPVPLFAIPNSTNGFIETINLLKE-GIEVKIL 62 (297)
T ss_pred EeeeCcEEEEEEecCCHHHHHHHHHHHhc-CCCEEEE
Confidence 45678999999999999999999998988 9997763
No 57
>cd02193 PurL Formylglycinamide ribonucleotide amidotransferase (FGAR-AT) catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=31.24 E-value=98 Score=26.78 Aligned_cols=38 Identities=13% Similarity=0.006 Sum_probs=29.4
Q ss_pred HHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEE
Q 029386 120 LRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVV 158 (194)
Q Consensus 120 l~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V 158 (194)
++.|...++...++.++. ++..++.+.+++.||++++|
T Consensus 232 ~~~~~ses~~~~l~~v~~-~~~~~~~~~~~~~gi~~~~I 269 (272)
T cd02193 232 LEIALFESQERGVIQVRA-EDRDAVEEAQYGLADCVHVL 269 (272)
T ss_pred HHHHHhhhccCeEEEECH-HHHHHHHHHHhccCCCeEEe
Confidence 456767777788888875 45677888888999998776
No 58
>COG3856 Sbp Uncharacterized conserved protein (small basic protein) [Function unknown]
Probab=31.22 E-value=26 Score=27.48 Aligned_cols=19 Identities=37% Similarity=0.926 Sum_probs=15.5
Q ss_pred cchhhHHHHhhhhhhcCCC
Q 029386 33 IPGLVIGFIFGMLLDLSKP 51 (194)
Q Consensus 33 ~~g~~~g~~~g~~~~~~~~ 51 (194)
+.||+||+++|+..+..-+
T Consensus 5 i~gL~iGI~lGlv~n~~vP 23 (113)
T COG3856 5 IAGLLIGIVLGLVFNPGVP 23 (113)
T ss_pred HHHHHHHHHHhhhcCCCCc
Confidence 4699999999999987433
No 59
>PF14967 FAM70: FAM70 protein
Probab=30.54 E-value=42 Score=30.92 Aligned_cols=20 Identities=25% Similarity=0.587 Sum_probs=16.7
Q ss_pred CChhhHHHHhhHHHHHHHHH
Q 029386 92 MGSGKIASQCAHAATGMYAE 111 (194)
Q Consensus 92 Ms~GKiAAQ~aHAAv~a~~~ 111 (194)
.|.|-+||-||--.-+.+..
T Consensus 94 iSfGvVaAFcCaIVDGVfaa 113 (327)
T PF14967_consen 94 ISFGVVAAFCCAIVDGVFAA 113 (327)
T ss_pred EecchHHHHHHHHHHHHhhh
Confidence 58999999999888887754
No 60
>PRK12651 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=29.65 E-value=15 Score=29.85 Aligned_cols=25 Identities=36% Similarity=0.620 Sum_probs=21.1
Q ss_pred eeeeccCCCccchhhHHHHhhhhhh
Q 029386 23 LAVSFRPENFIPGLVIGFIFGMLLD 47 (194)
Q Consensus 23 ~~~~~~~~~~~~g~~~g~~~g~~~~ 47 (194)
|++++.|.+++-|+++|+++.++..
T Consensus 18 L~g~~~~~~l~~G~~v~~~v~~~~~ 42 (158)
T PRK12651 18 LTGSFSLGNFIIGFILGLFVLFLFR 42 (158)
T ss_pred HhCCcCHHHHHHHHHHHHHHHHHHh
Confidence 3577999999999999999997664
No 61
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.64 E-value=8.8 Score=28.06 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=13.4
Q ss_pred ceeeeccCCCccchhhHHHHhhhhh
Q 029386 22 SLAVSFRPENFIPGLVIGFIFGMLL 46 (194)
Q Consensus 22 ~~~~~~~~~~~~~g~~~g~~~g~~~ 46 (194)
||+.-+-+-.++.|+++||++...+
T Consensus 4 ~lail~ivl~ll~G~~~G~fiark~ 28 (71)
T COG3763 4 WLAILLIVLALLAGLIGGFFIARKQ 28 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445566666666665443
No 62
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=29.38 E-value=1.1e+02 Score=22.18 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=27.5
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCC
Q 029386 127 GQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRT 164 (194)
Q Consensus 127 G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V~DAGrT 164 (194)
..++||+-|.+-..-..+...++..|.+.+.+.|.|.+
T Consensus 77 ~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 114 (118)
T cd01449 77 PDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWS 114 (118)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHH
Confidence 46788888988555555667778889876677777653
No 63
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=29.33 E-value=89 Score=22.05 Aligned_cols=29 Identities=14% Similarity=0.274 Sum_probs=25.0
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHHCCCCe
Q 029386 127 GQPKIVVTCKNQQEMNKLWEVAENTGLPT 155 (194)
Q Consensus 127 G~~KIVLk~~~e~eL~~L~~~A~~~glp~ 155 (194)
+..-+.+.++|.+++.++.+++++.|++.
T Consensus 73 ~~~hi~f~v~~~~~~~~~~~~~~~~g~~~ 101 (126)
T cd08346 73 QIHHIAFSVPSEASLDAWRERLRAAGVPV 101 (126)
T ss_pred cEEEEEEEcCCHHHHHHHHHHHHHcCCcc
Confidence 44578999999989999999999999864
No 64
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=29.28 E-value=72 Score=28.97 Aligned_cols=36 Identities=17% Similarity=0.398 Sum_probs=32.0
Q ss_pred HHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEE
Q 029386 122 KWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFV 157 (194)
Q Consensus 122 ~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~ 157 (194)
.|+-.|.+++.+.+.|.++|.++.+.++..++|+.+
T Consensus 14 tfriGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~i 49 (291)
T COG0812 14 TFRIGGPAEVLVEPRDIEELKAALKYAKAEDLPVLI 49 (291)
T ss_pred eEecCcceeEEEecCCHHHHHHHHHhhhhcCCCEEE
Confidence 456689999999999999999999999999999765
No 65
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=29.27 E-value=1.4e+02 Score=20.68 Aligned_cols=50 Identities=14% Similarity=0.225 Sum_probs=34.7
Q ss_pred HhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCCcccCCCeeEEEec
Q 029386 124 EQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIG 177 (194)
Q Consensus 124 ~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V~DAGrTev~pgs~TvlAIG 177 (194)
+..|.+. .+-..+ ..+..-.+.|...|+|+++|.. ..|+..|++++--..
T Consensus 28 r~~g~~v-~~d~~~-~~l~k~i~~a~~~g~~~~iiiG--~~e~~~~~v~vk~~~ 77 (94)
T cd00861 28 QAAGVDV-LLDDRN-ERPGVKFADADLIGIPYRIVVG--KKSAAEGIVEIKVRK 77 (94)
T ss_pred HHCCCEE-EEECCC-CCcccchhHHHhcCCCEEEEEC--CchhhCCEEEEEECC
Confidence 3456533 443333 4777788889999999999984 567888888876553
No 66
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=29.18 E-value=1e+02 Score=21.82 Aligned_cols=29 Identities=14% Similarity=0.255 Sum_probs=25.2
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHHCCCCe
Q 029386 127 GQPKIVVTCKNQQEMNKLWEVAENTGLPT 155 (194)
Q Consensus 127 G~~KIVLk~~~e~eL~~L~~~A~~~glp~ 155 (194)
|..-+.+.+.|.+++.++.+++++.|++.
T Consensus 70 g~~hi~f~v~~~~~v~~~~~~l~~~g~~~ 98 (125)
T cd07241 70 GWAHLAFSVGSKEAVDELTERLRADGYLI 98 (125)
T ss_pred ceEEEEEECCCHHHHHHHHHHHHHCCCEE
Confidence 55679999999999999999999999753
No 67
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=28.85 E-value=1.2e+02 Score=20.30 Aligned_cols=45 Identities=16% Similarity=0.252 Sum_probs=32.5
Q ss_pred HHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCCc
Q 029386 121 RKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQ 165 (194)
Q Consensus 121 ~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V~DAGrTe 165 (194)
..+......+||+-|.+...-..+...++..|...+.+.+.|..+
T Consensus 49 ~~~~~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~~ 93 (100)
T smart00450 49 KRLGLDKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYKE 93 (100)
T ss_pred HHcCCCCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHHH
Confidence 344445567888899876666677777888898867777877643
No 68
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.67 E-value=1e+02 Score=20.87 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=23.2
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHHCCCC
Q 029386 127 GQPKIVVTCKNQQEMNKLWEVAENTGLP 154 (194)
Q Consensus 127 G~~KIVLk~~~e~eL~~L~~~A~~~glp 154 (194)
..-.+.+++++.+++.++.+..++.|..
T Consensus 38 ~~v~v~ie~~~~~~~~~i~~~L~~~G~~ 65 (68)
T cd04885 38 ARVLVGIQVPDREDLAELKERLEALGYP 65 (68)
T ss_pred eEEEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 4455678999999999999999999953
No 69
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=27.39 E-value=1.3e+02 Score=29.17 Aligned_cols=49 Identities=29% Similarity=0.476 Sum_probs=39.0
Q ss_pred HHH--hCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCCcccCCCee
Q 029386 122 KWE--QCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKT 172 (194)
Q Consensus 122 ~W~--~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V~DAGrTev~pgs~T 172 (194)
.|. ..|+.|.||+-++-+|..+|.+-+.++.| .+|=-.|.|-.-.||+-
T Consensus 81 dwm~kyrG~sklvL~Pkst~eVS~ILkYCn~~kL--AVVPQGGNTgLVGgSVP 131 (511)
T KOG1232|consen 81 DWMKKYRGQSKLVLKPKSTEEVSAILKYCNDRKL--AVVPQGGNTGLVGGSVP 131 (511)
T ss_pred HHHHhccCCceEEecCCCHHHHHHHHHhhccccE--EEecCCCCcccccCccc
Confidence 454 35999999999999999999998887775 56677777777777653
No 70
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=26.18 E-value=2.4e+02 Score=19.89 Aligned_cols=29 Identities=7% Similarity=0.092 Sum_probs=25.0
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHHCCCCe
Q 029386 127 GQPKIVVTCKNQQEMNKLWEVAENTGLPT 155 (194)
Q Consensus 127 G~~KIVLk~~~e~eL~~L~~~A~~~glp~ 155 (194)
+..-+.+.+.+.+++.++.++++..|+..
T Consensus 58 ~~~~~~~~v~~~~~l~~~~~~l~~~G~~~ 86 (120)
T cd08362 58 RLDVVSFSVASRADVDALARQVAARGGTV 86 (120)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCce
Confidence 45678999999999999999999999753
No 71
>TIGR03266 methan_mark_1 putative methanogenesis marker protein 1. Members of this protein family represent a distinct clade among the larger set of proteins that belong to families TIGR00702 and pfam02624. Proteins from this clade are found in genome sequence if and only if the species sequenced is one of the methanogens. All methanogens belong to the archaea; some but not all of those sequenced are hyperthermophiles. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006).
Probab=25.96 E-value=4.5e+02 Score=24.15 Aligned_cols=81 Identities=22% Similarity=0.237 Sum_probs=44.0
Q ss_pred eCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHH-hCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCCc
Q 029386 87 RQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWE-QCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQ 165 (194)
Q Consensus 87 R~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~-~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V~DAGrTe 165 (194)
...=|+..|....+ |.+.+..+..++|--. ..|. ....++|-+...| ..+.++.++.++.|+.. .+.|.-.
T Consensus 151 ~~SnGlAaGnt~eE---AilhgL~EvIERDA~~-l~w~~~~~~~~id~~~~d-~~~~~l~~~~~~~g~~v-~l~d~t~-- 222 (376)
T TIGR03266 151 SNTNGLASGNVLEE---AIFHGLLEVIERDAWS-LAEASRNLGPEINVTAEN-GYLYELLEKFKDAGVDV-KLRDLTS-- 222 (376)
T ss_pred ecCCccCCCCCHHH---HHHHHHHHHHHhhHHH-HHHHhccCCCcccCCCCC-HHHHHHHHHHHhcCCEE-EEEeCcC--
Confidence 34445555555443 3444444555444333 3454 4455666664444 56888888888889754 4456521
Q ss_pred ccCCCeeEEEe
Q 029386 166 VSAGSKTVLAI 176 (194)
Q Consensus 166 v~pgs~TvlAI 176 (194)
.-|-.|+.|+
T Consensus 223 -d~giP~v~a~ 232 (376)
T TIGR03266 223 -DTGIPTVAAV 232 (376)
T ss_pred -CCCCcEEEEE
Confidence 2244455554
No 72
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=25.95 E-value=3.1e+02 Score=21.55 Aligned_cols=67 Identities=19% Similarity=0.265 Sum_probs=40.7
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCC-----CcccCCCeeEEEe-cCC--CccchhhhcCCCCC
Q 029386 127 GQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGR-----TQVSAGSKTVLAI-GPG--PKSLVDSVTGKQRL 193 (194)
Q Consensus 127 G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V~DAGr-----Tev~pgs~TvlAI-GP~--p~~~Id~iTg~LKL 193 (194)
+..-+.+.++|.+++.++.+.+++.|+...-..|.+. .+=|.|...-+.. .|. -.+..+++-.+|||
T Consensus 65 ~l~Hiaf~v~d~~dvd~~~~~L~~~Gv~~~~~~~~~~~~s~yf~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~ 139 (157)
T cd08347 65 TVHHVAFRVPDDEELEAWKERLEALGLPVSGIVDRFYFKSLYFREPGGILFEIATDGPGFTVDEPLEELGERLKL 139 (157)
T ss_pred ceEEEEEECCCHHHHHHHHHHHHHCCCCcccccccccEEEEEEECCCCcEEEEEECCCCccccCChhHcCCccCC
Confidence 4557889999999999999999999986432222221 1123444333333 232 24456666667765
No 73
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=25.47 E-value=91 Score=23.78 Aligned_cols=28 Identities=14% Similarity=0.344 Sum_probs=24.4
Q ss_pred CCCCeEEEecCCHHHHHHHHHHHHHCCC
Q 029386 126 CGQPKIVVTCKNQQEMNKLWEVAENTGL 153 (194)
Q Consensus 126 ~G~~KIVLk~~~e~eL~~L~~~A~~~gl 153 (194)
+|-+-=.+.++|++.|.++.+++++.|+
T Consensus 69 ~GvH~HtI~a~~~e~l~~I~~~L~~~G~ 96 (98)
T PF02829_consen 69 GGVHYHTIEAPDEEDLDKIEEALKKKGF 96 (98)
T ss_dssp GGEEEEEEEESSHHHHHHHHHHHHHTT-
T ss_pred CCEeeEEEEECCHHHHHHHHHHHHHCCC
Confidence 5677778899999999999999999985
No 74
>PRK08965 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=25.41 E-value=20 Score=29.31 Aligned_cols=25 Identities=36% Similarity=0.655 Sum_probs=21.2
Q ss_pred eeeeccCCCccchhhHHHHhhhhhh
Q 029386 23 LAVSFRPENFIPGLVIGFIFGMLLD 47 (194)
Q Consensus 23 ~~~~~~~~~~~~g~~~g~~~g~~~~ 47 (194)
|++++.+.+++-|+++|+++.+++.
T Consensus 22 L~g~~~~~~l~~G~~~~~~v~~~~~ 46 (162)
T PRK08965 22 LNGSFSLGNLLLGLLLGLLIPLLLA 46 (162)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4567999999999999999997774
No 75
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=25.40 E-value=2.5e+02 Score=26.60 Aligned_cols=26 Identities=19% Similarity=0.380 Sum_probs=20.5
Q ss_pred cCCHHHHHHHHHHHHH-CCCCeEEEEc
Q 029386 135 CKNQQEMNKLWEVAEN-TGLPTFVVAD 160 (194)
Q Consensus 135 ~~~e~eL~~L~~~A~~-~glp~~~V~D 160 (194)
..|.++|.+..++++. .+-|+++|..
T Consensus 289 GhD~~~i~~A~~~a~~~~~kPt~Iia~ 315 (386)
T cd02017 289 GHDPRKVYAAYKKAVEHKGKPTVILAK 315 (386)
T ss_pred CCCHHHHHHHHHHHHhCCCCCeEEEEe
Confidence 6788888888877774 5779999983
No 76
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=25.23 E-value=21 Score=32.98 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=20.7
Q ss_pred eeeccCCCccchhhHHHHhhhhh
Q 029386 24 AVSFRPENFIPGLVIGFIFGMLL 46 (194)
Q Consensus 24 ~~~~~~~~~~~g~~~g~~~g~~~ 46 (194)
+++|.+.+|+-|+++|+++.+++
T Consensus 184 sg~~s~~~l~~G~v~~~~v~~~~ 206 (357)
T PRK12652 184 GDPLYWFDLLTGAVTALIVAVLL 206 (357)
T ss_pred cCcCCHHHHHHHHHHHHHHHHHh
Confidence 67899999999999999998776
No 77
>PRK12856 hypothetical protein; Provisional
Probab=25.07 E-value=1.2e+02 Score=23.32 Aligned_cols=42 Identities=24% Similarity=0.293 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHCCCCeEEEEcCCCCcccCCCeeEEEecCC
Q 029386 138 QQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPG 179 (194)
Q Consensus 138 e~eL~~L~~~A~~~glp~~~V~DAGrTev~pgs~TvlAIGP~ 179 (194)
++.+.++.++|++.|=+..+=.+=.-+++..|..-|+|.|.+
T Consensus 59 ~~A~~rm~~~A~~lGAnAVvgvr~d~~~~~~~~~~V~ayGTA 100 (103)
T PRK12856 59 DIAMDEMKELAKQKGANAIVGVDVDYEVVRDGMLMVAVSGTA 100 (103)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEhhHhcCcEEEEEEEeeE
Confidence 467888999999999777765555556666677778887764
No 78
>PF08219 TOM13: Outer membrane protein TOM13; InterPro: IPR013262 The TOM13 family of proteins are mitochondrial outer membrane proteins that mediate the assembly of beta-barrel proteins [].; GO: 0005741 mitochondrial outer membrane
Probab=24.98 E-value=31 Score=25.64 Aligned_cols=10 Identities=50% Similarity=1.218 Sum_probs=8.6
Q ss_pred CccchhhHHH
Q 029386 31 NFIPGLVIGF 40 (194)
Q Consensus 31 ~~~~g~~~g~ 40 (194)
-|+-|||+||
T Consensus 43 PFiNG~MLGF 52 (77)
T PF08219_consen 43 PFINGMMLGF 52 (77)
T ss_pred hhhhhhhHhH
Confidence 3889999998
No 79
>PF09472 MtrF: Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF); InterPro: IPR013347 Many archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This domain is mostly found in MtrF, where it covers the entire length of the protein. This polypeptide is one of eight subunits of the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase complex found in methanogenic archaea. This is a membrane-associated enzyme complex that uses methyl-transfer reactions to drive a sodium-ion pump []. MtrF itself is involved in the transfer of the methyl group from N5-methyltetrahydromethanopterin to coenzyme M. Subsequently, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the C-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016020 membrane
Probab=24.90 E-value=40 Score=24.08 Aligned_cols=17 Identities=41% Similarity=0.860 Sum_probs=11.9
Q ss_pred CCccchhhHHHHhhhhh
Q 029386 30 ENFIPGLVIGFIFGMLL 46 (194)
Q Consensus 30 ~~~~~g~~~g~~~g~~~ 46 (194)
.+.+.|+++||++.+.+
T Consensus 39 ~~~~~GfaiG~~~AlvL 55 (64)
T PF09472_consen 39 ATGIKGFAIGFLFALVL 55 (64)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 45677888888877554
No 80
>PTZ00299 homoserine kinase; Provisional
Probab=24.78 E-value=2.9e+02 Score=25.27 Aligned_cols=87 Identities=16% Similarity=0.127 Sum_probs=50.6
Q ss_pred CCeeEEEEEeCCCCC---------------ChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHHh--CCCCeEE-EecCCHH
Q 029386 78 QDLKLALVVRQDLKM---------------GSGKIASQCAHAATGMYAELMQSDRHLLRKWEQ--CGQPKIV-VTCKNQQ 139 (194)
Q Consensus 78 ~~~kmVlVVR~DL~M---------------s~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~~--~G~~KIV-Lk~~~e~ 139 (194)
+++..|+++ +|..+ +......+.+|+++. ...+...+.+.++ +.. -.++..+ -..+
T Consensus 169 ~~~~~vv~i-P~~~~~~sT~~aR~vLP~~v~~~dav~n~~~~~~l-v~al~~~d~~ll~-~~~D~lhep~R~~~liP--- 242 (336)
T PTZ00299 169 PNLSVVLFV-PHNKMKANTHVTRNLIPTSVSLEDAVFNISRTSIL-VLALSTGDLRMLK-SCSDKLHEQQRSDALFP--- 242 (336)
T ss_pred CCeEEEEEE-CCCCccccHHHHHhhCcccCcHHHHHHhhhHHHHH-HHHHHhCCHHHHH-hchhcccCcccccccCc---
Confidence 356666665 67654 455666677776643 2233344555552 221 2334433 1233
Q ss_pred HHHHHHHHHHHCCCCeEEEEcCCCCcccCCCeeEEEecC
Q 029386 140 EMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGP 178 (194)
Q Consensus 140 eL~~L~~~A~~~glp~~~V~DAGrTev~pgs~TvlAIGP 178 (194)
++.++.+.+.+.|--.+.+--|| .||+|+-+
T Consensus 243 ~~~~v~~~~~~~Ga~g~~lSGSG--------PTv~al~~ 273 (336)
T PTZ00299 243 HFRPCVKAAREAGAHYAFLSGAG--------PSVCALVG 273 (336)
T ss_pred cHHHHHHHHHHCCCeEEEEEchh--------hhheEEec
Confidence 56777788888887777788777 58888865
No 81
>PRK08383 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=24.74 E-value=21 Score=29.67 Aligned_cols=21 Identities=33% Similarity=0.673 Sum_probs=18.6
Q ss_pred ccCCCccchhhHHHHhhhhhh
Q 029386 27 FRPENFIPGLVIGFIFGMLLD 47 (194)
Q Consensus 27 ~~~~~~~~g~~~g~~~g~~~~ 47 (194)
+.+++++-|+++|++++++..
T Consensus 26 ~s~~~l~~Gll~~~~v~~l~~ 46 (168)
T PRK08383 26 WSPEELIAGLIFAAIVGYATR 46 (168)
T ss_pred CCHHHHHHHHHHHHHHHHHHh
Confidence 789999999999999997774
No 82
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=24.71 E-value=1e+02 Score=23.45 Aligned_cols=72 Identities=25% Similarity=0.412 Sum_probs=40.5
Q ss_pred EEEeCCCCCChhhHHHHhhH--HHHHHHHHHhhhCHHHHHHHHhCCCCe--EEEecCCHHHHHHHHHHHHHCCCCeEEEE
Q 029386 84 LVVRQDLKMGSGKIASQCAH--AATGMYAELMQSDRHLLRKWEQCGQPK--IVVTCKNQQEMNKLWEVAENTGLPTFVVA 159 (194)
Q Consensus 84 lVVR~DL~Ms~GKiAAQ~aH--AAv~a~~~~~~~~~~~l~~W~~~G~~K--IVLk~~~e~eL~~L~~~A~~~glp~~~V~ 159 (194)
+.|+.|.+.+.+--++++.- |.-.+|..-.++.-.+..-|+-.|+.. -+..++|.+||.+|.. ++|-+-+.
T Consensus 2 flV~m~V~~P~~~~~~~~~~i~a~Eka~a~eLq~~Gk~~~lWRv~G~~~n~sifdv~s~~eLh~iL~-----sLPL~p~m 76 (90)
T TIGR03221 2 FHVRMDVNLPVDMPAEKAAAIKAREKAYAQELQREGKWRHLWRVAGEYANYSIFDVESNDELHTLLS-----GLPLFPYM 76 (90)
T ss_pred eEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHhCCceEEEEEecCCceeEEEEEcCCHHHHHHHHH-----hCCCCcce
Confidence 34566665544433333322 222233222223334555677666443 4568899999999886 78888776
Q ss_pred c
Q 029386 160 D 160 (194)
Q Consensus 160 D 160 (194)
|
T Consensus 77 ~ 77 (90)
T TIGR03221 77 D 77 (90)
T ss_pred E
Confidence 4
No 83
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=24.54 E-value=2e+02 Score=22.67 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHCCCCeEEEEcCCCCcccCCCeeEEEe
Q 029386 139 QEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAI 176 (194)
Q Consensus 139 ~eL~~L~~~A~~~glp~~~V~DAGrTev~pgs~TvlAI 176 (194)
+++.++.+.|++.|+++..|.+...+.+..-.-.++-+
T Consensus 93 ~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~ad~~l~~ 130 (154)
T TIGR00441 93 KNVLKAIEAAKDKGMKTITLAGKDGGKMAGLADIELRV 130 (154)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEe
Confidence 78889999999999999999987776666544444544
No 84
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=24.38 E-value=46 Score=24.36 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=14.3
Q ss_pred cccceeeeccCCCccchhhHHHHhhhhhh
Q 029386 19 EKVSLAVSFRPENFIPGLVIGFIFGMLLD 47 (194)
Q Consensus 19 ~~~~~~~~~~~~~~~~g~~~g~~~g~~~~ 47 (194)
+.||-++. -++.+||++|+++.
T Consensus 71 e~P~~svg-------iAagvG~llG~Ll~ 92 (94)
T PF05957_consen 71 ENPWQSVG-------IAAGVGFLLGLLLR 92 (94)
T ss_pred HChHHHHH-------HHHHHHHHHHHHHh
Confidence 45776643 35678888887763
No 85
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=24.36 E-value=1.7e+02 Score=20.50 Aligned_cols=30 Identities=13% Similarity=0.217 Sum_probs=25.4
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHHCCCCeE
Q 029386 127 GQPKIVVTCKNQQEMNKLWEVAENTGLPTF 156 (194)
Q Consensus 127 G~~KIVLk~~~e~eL~~L~~~A~~~glp~~ 156 (194)
+...+.+.+.+.+++.++.+.+++.|+...
T Consensus 57 ~~~h~~~~v~~~~~v~~~~~~l~~~g~~~~ 86 (117)
T cd07240 57 GVDALGFEVASEEDLEALAAHLEAAGVAPE 86 (117)
T ss_pred CceeEEEEcCCHHHHHHHHHHHHHcCCceE
Confidence 556789999999999999999999997643
No 86
>PRK13937 phosphoheptose isomerase; Provisional
Probab=24.35 E-value=1.7e+02 Score=23.93 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHCCCCeEEEEcCCCCcccCCCeeEEEecC
Q 029386 138 QQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGP 178 (194)
Q Consensus 138 e~eL~~L~~~A~~~glp~~~V~DAGrTev~pgs~TvlAIGP 178 (194)
-.++.++.+.|++.|+++..|.+...+.+..-.-.+|-+..
T Consensus 119 t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~~~~ 159 (188)
T PRK13937 119 SPNVLAALEKARELGMKTIGLTGRDGGKMKELCDHLLIVPS 159 (188)
T ss_pred cHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeCC
Confidence 37888999999999999999998777777665656666643
No 87
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=23.94 E-value=3e+02 Score=20.63 Aligned_cols=39 Identities=15% Similarity=0.245 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHCCCCeEEEEcCCCCcccCCCeeEEEecCC
Q 029386 139 QEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPG 179 (194)
Q Consensus 139 ~eL~~L~~~A~~~glp~~~V~DAGrTev~pgs~TvlAIGP~ 179 (194)
..+....+.|+..|+|+.+|.. -.|+..|++++--....
T Consensus 64 ~sl~kqlk~A~k~g~~~~iiiG--~~e~~~~~v~lk~l~~~ 102 (121)
T cd00858 64 GSIGRRYARQDEIGTPFCVTVD--FDTLEDGTVTIRERDSM 102 (121)
T ss_pred CCHHHHHHHhHhcCCCEEEEEC--cCchhCCEEEEEECCCC
Confidence 5788888889999999999985 44777887777655433
No 88
>COG5304 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.69 E-value=95 Score=23.76 Aligned_cols=29 Identities=17% Similarity=0.318 Sum_probs=24.1
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHHCCCCeE
Q 029386 127 GQPKIVVTCKNQQEMNKLWEVAENTGLPTF 156 (194)
Q Consensus 127 G~~KIVLk~~~e~eL~~L~~~A~~~glp~~ 156 (194)
--+.|.++++ +..|+.+..+|-..|+|+-
T Consensus 50 kd~riniRls-s~dLeaIK~kaSa~GlpYQ 78 (92)
T COG5304 50 KDTRINIRLS-SSDLEAIKQKASAEGLPYQ 78 (92)
T ss_pred ccceeeEecC-HHHHHHHHHHHhhcCCcHH
Confidence 3467888997 5789999999999999963
No 89
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=23.68 E-value=33 Score=22.75 Aligned_cols=18 Identities=28% Similarity=0.678 Sum_probs=14.0
Q ss_pred CccchhhHHHHhhhhhhc
Q 029386 31 NFIPGLVIGFIFGMLLDL 48 (194)
Q Consensus 31 ~~~~g~~~g~~~g~~~~~ 48 (194)
+|..++++|+++|+++|-
T Consensus 9 ~~~~~i~~g~~~G~~lD~ 26 (55)
T PF09527_consen 9 TMAAPILVGFFLGYWLDK 26 (55)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355678889999999884
No 90
>PRK12855 hypothetical protein; Provisional
Probab=23.56 E-value=1.5e+02 Score=22.95 Aligned_cols=42 Identities=19% Similarity=0.193 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHCCCCeEEEEcCCCCcccCCCeeEEEecCC
Q 029386 138 QQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPG 179 (194)
Q Consensus 138 e~eL~~L~~~A~~~glp~~~V~DAGrTev~pgs~TvlAIGP~ 179 (194)
++.+.++.++|++.|=+..+=.+=.-+++..|..-|+|.|.+
T Consensus 59 ~~A~~rm~~~A~~lGAnAVVgvr~d~~~i~~~~~~V~ayGTA 100 (103)
T PRK12855 59 DIAMEEMKTLARQKNANAIVGIDVDYEVVREGMLMVAVSGTA 100 (103)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEhhHhcCcEEEEEEEeeE
Confidence 467888999999999777665555556666677777787754
No 91
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=23.34 E-value=1.9e+02 Score=26.44 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=26.8
Q ss_pred CCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcC
Q 029386 128 QPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADA 161 (194)
Q Consensus 128 ~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V~DA 161 (194)
++.+|++....-|=....+.+++.||++++|.|+
T Consensus 146 ~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~Ds 179 (301)
T COG1184 146 FKVIVTESRPRGEGRIMAKELRQSGIPVTVIVDS 179 (301)
T ss_pred eEEEEEcCCCcchHHHHHHHHHHcCCceEEEech
Confidence 4666766666666677888888999999999997
No 92
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=23.31 E-value=2.5e+02 Score=19.16 Aligned_cols=54 Identities=20% Similarity=0.331 Sum_probs=35.7
Q ss_pred HHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCCcccCCCeeEEEecCC
Q 029386 122 KWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPG 179 (194)
Q Consensus 122 ~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V~DAGrTev~pgs~TvlAIGP~ 179 (194)
.++..|. .+.+... ...+....+.|+..|+++.+|.+. +++..+++++--....
T Consensus 26 ~Lr~~g~-~v~~~~~-~~~~~k~~~~a~~~g~~~~iiig~--~e~~~~~v~i~~~~~~ 79 (94)
T cd00738 26 ALLANGI-RVLYDDR-ERKIGKKFREADLRGVPFAVVVGE--DELENGKVTVKSRDTG 79 (94)
T ss_pred HHHHCCC-EEEecCC-CcCHhHHHHHHHhCCCCEEEEECC--ChhhCCEEEEEECCCC
Confidence 3444554 3333232 267888888899999999999863 5677777776655443
No 93
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=23.07 E-value=1.4e+02 Score=21.27 Aligned_cols=30 Identities=10% Similarity=0.199 Sum_probs=25.0
Q ss_pred CCCCeEEEecCCHHHHHHHHHHHHHCCCCe
Q 029386 126 CGQPKIVVTCKNQQEMNKLWEVAENTGLPT 155 (194)
Q Consensus 126 ~G~~KIVLk~~~e~eL~~L~~~A~~~glp~ 155 (194)
.|..-+.+.+++.+++.++.+++++.|+..
T Consensus 63 ~~~~hi~f~v~~~~~v~~~~~~l~~~g~~~ 92 (125)
T cd07255 63 TGLYHFAILLPSRADLAAALRRLIELGIPL 92 (125)
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHcCCce
Confidence 345567899999999999999999999854
No 94
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=22.99 E-value=1.3e+02 Score=21.86 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=22.7
Q ss_pred CeEEEecCCHHHHHHHHHHHHHCCCC
Q 029386 129 PKIVVTCKNQQEMNKLWEVAENTGLP 154 (194)
Q Consensus 129 ~KIVLk~~~e~eL~~L~~~A~~~glp 154 (194)
.-+.+.|++.+++.++.+++++.|+.
T Consensus 70 ~~l~f~v~~~~~vd~~~~~l~~~G~~ 95 (124)
T cd09012 70 VLISLSADSREEVDELVEKALAAGGK 95 (124)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHCCCc
Confidence 35789999999999999999999964
No 95
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=22.90 E-value=1.9e+02 Score=23.02 Aligned_cols=38 Identities=11% Similarity=0.172 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHCCCCeEEEEcCCCCcccCCCeeEEEe
Q 029386 139 QEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAI 176 (194)
Q Consensus 139 ~eL~~L~~~A~~~glp~~~V~DAGrTev~pgs~TvlAI 176 (194)
.++.++.+.|++.|+++..|.|.....+..-+-.++.+
T Consensus 86 ~~~i~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~ 123 (179)
T TIGR03127 86 ESLVTVAKKAKEIGATVAAITTNPESTLGKLADVVVEI 123 (179)
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEe
Confidence 67888999999999999999998877777666566665
No 96
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=22.85 E-value=1.8e+02 Score=22.44 Aligned_cols=32 Identities=28% Similarity=0.417 Sum_probs=25.9
Q ss_pred CeEEEecCCHHHHHHHHHHHHHCCCCeEEEEc
Q 029386 129 PKIVVTCKNQQEMNKLWEVAENTGLPTFVVAD 160 (194)
Q Consensus 129 ~KIVLk~~~e~eL~~L~~~A~~~glp~~~V~D 160 (194)
-||.|+-.+..++.-|...|++.|+|....-|
T Consensus 57 ~~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~d 88 (100)
T PF15608_consen 57 WKVLVRDPDDPDLAHLLLLAEEKGVPVEVYPD 88 (100)
T ss_pred CEEEECCCCCccHHHHHHHHHHcCCcEEEeCC
Confidence 47777877778899999999999998776544
No 97
>PF02624 YcaO: YcaO-like family; InterPro: IPR003776 This domain comprises the whole of a protein in Methanocaldococcus jannaschii (Methanococcus jannaschii) and Methanobacterium thermoautotrophicum, all but the N-terminal 60 residues from a protein of Mycobacterium tuberculosis, and all but the C-terminal 180 residues from a protein in Haemophilus influenzae and Escherichia coli, among proteins from published complete genomes.
Probab=22.67 E-value=4.8e+02 Score=22.53 Aligned_cols=68 Identities=21% Similarity=0.198 Sum_probs=37.4
Q ss_pred HHHHHHHHhhhCHHHHHHHHhC-CCCeE-EEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCCcccCCCeeEEEec
Q 029386 105 ATGMYAELMQSDRHLLRKWEQC-GQPKI-VVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIG 177 (194)
Q Consensus 105 Av~a~~~~~~~~~~~l~~W~~~-G~~KI-VLk~~~e~eL~~L~~~A~~~glp~~~V~DAGrTev~pgs~TvlAIG 177 (194)
.+.+..++.+++ .....|... ..++| .+......++.+..+.++..|+. ..+.|.-. .-|..|++|+.
T Consensus 124 ~~~al~E~iERd-a~~~~w~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-v~l~dit~---~~~vpv~~a~~ 193 (332)
T PF02624_consen 124 ILHALLEVIERD-AFSLWWYNRLPPPRIDDVLDPTLPELLERLERLREAGLE-VRLFDITN---DFGVPVVAAVL 193 (332)
T ss_pred HHHHHHHHHHHH-HHHHHHHhcCCCCeEecccCcCCHHHHHHHHHhhcCceE-EEEEECCC---CCCceEEEEEE
Confidence 333444555433 234456543 34555 34444556777777777778854 44556531 34667777776
No 98
>PRK07714 hypothetical protein; Provisional
Probab=22.45 E-value=2.5e+02 Score=20.87 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=31.2
Q ss_pred HHHHHHHhCCCCeEEEecCCHH--HHHHHHHHHHHCCCCeEEE
Q 029386 118 HLLRKWEQCGQPKIVVTCKNQQ--EMNKLWEVAENTGLPTFVV 158 (194)
Q Consensus 118 ~~l~~W~~~G~~KIVLk~~~e~--eL~~L~~~A~~~glp~~~V 158 (194)
+.+..|...|..+.|+-..|-. ...++...|+..++|++.+
T Consensus 24 ~~v~~al~~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~ 66 (100)
T PRK07714 24 ELVLKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMRKV 66 (100)
T ss_pred HHHHHHHHhCCceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEe
Confidence 3456777778899999888753 4566888888899998755
No 99
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=22.39 E-value=1.6e+02 Score=21.12 Aligned_cols=31 Identities=10% Similarity=0.270 Sum_probs=25.5
Q ss_pred CCCCeEEEecCCHHHHHHHHHHHHHCCCCeE
Q 029386 126 CGQPKIVVTCKNQQEMNKLWEVAENTGLPTF 156 (194)
Q Consensus 126 ~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~ 156 (194)
.|..-+.+.++|.+++.++.+++++.|++..
T Consensus 67 ~g~~hia~~v~~~~d~~~~~~~l~~~g~~~~ 97 (128)
T cd07242 67 PGLHHLAFRAPSREAVDELYARLAKRGAEIL 97 (128)
T ss_pred cCeeEEEEEcCCHHHHHHHHHHHHHcCCeEe
Confidence 3556689999999999999999999997433
No 100
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=22.32 E-value=1.1e+02 Score=23.33 Aligned_cols=25 Identities=12% Similarity=0.606 Sum_probs=22.2
Q ss_pred CCeEEEecCCHHHHHHHHHHHHHCC
Q 029386 128 QPKIVVTCKNQQEMNKLWEVAENTG 152 (194)
Q Consensus 128 ~~KIVLk~~~e~eL~~L~~~A~~~g 152 (194)
.-.++|.++|++|+.++.+++.+.|
T Consensus 72 ~~sl~i~~~~~ee~~~~f~~Ls~gG 96 (116)
T PF06983_consen 72 NISLCIECDDEEEIDRIFDKLSEGG 96 (116)
T ss_dssp TEEEEEEESSHHHHHHHHHHHHTTT
T ss_pred cEEEEEEcCCHHHHHHHHHHHHcCC
Confidence 3578899999999999999998876
No 101
>PRK06724 hypothetical protein; Provisional
Probab=22.04 E-value=1.4e+02 Score=22.69 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=24.9
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHHCCCCe
Q 029386 127 GQPKIVVTCKNQQEMNKLWEVAENTGLPT 155 (194)
Q Consensus 127 G~~KIVLk~~~e~eL~~L~~~A~~~glp~ 155 (194)
|..-+.+++.+.+++.++.+.+++.|+++
T Consensus 63 g~~h~af~v~~~~dvd~~~~~l~~~G~~~ 91 (128)
T PRK06724 63 GPRHICYQAINRKVVDEVAEFLSSTKIKI 91 (128)
T ss_pred CceeEEEecCChHHHHHHHHHHHHCCCEE
Confidence 55678899999999999999999999753
No 102
>PF04093 MreD: rod shape-determining protein MreD; InterPro: IPR007227 The MreD (murein formation D) protein is involved in bacterial cell shape determination. Most rod-shaped bacteria depend on MreB and RodA to achieve either a rod shape or some other non-spherical morphology such as coil or stalk formation. MreD is encoded in an operon with MreB, and often with RodA and PBP-2 as well. It is highly hydrophobic (therefore somewhat low-complexity) and highly divergent, and therefore cannot always be identified on the basis of sequence similarity.; GO: 0008360 regulation of cell shape, 0016021 integral to membrane
Probab=21.88 E-value=50 Score=25.73 Aligned_cols=19 Identities=42% Similarity=0.719 Sum_probs=15.8
Q ss_pred cchhhHHHHhhhhhhcCCC
Q 029386 33 IPGLVIGFIFGMLLDLSKP 51 (194)
Q Consensus 33 ~~g~~~g~~~g~~~~~~~~ 51 (194)
..|+++||++|+.+|+-.+
T Consensus 51 ~~g~~~~~~~GLl~D~~~~ 69 (160)
T PF04093_consen 51 RAGLWLGFIIGLLQDIYYG 69 (160)
T ss_pred hhHHHHHHHHHHHHHHHCC
Confidence 4689999999999998443
No 103
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=21.31 E-value=3.8e+02 Score=26.73 Aligned_cols=44 Identities=18% Similarity=0.176 Sum_probs=35.2
Q ss_pred CCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCCcccCCCe
Q 029386 126 CGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSK 171 (194)
Q Consensus 126 ~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V~DAGrTev~pgs~ 171 (194)
.+.+..||...+++|..++.+.|.+.++|. |--+|.|-+..|+.
T Consensus 36 ~g~P~AVV~P~SteEVa~IVklC~e~~vPV--IPRGgGTGLtGGAv 79 (564)
T PRK11183 36 QGDALAVVFPGTLLELWRVLQACVAADKII--IMQAANTGLTGGST 79 (564)
T ss_pred CCCCCEEEecCCHHHHHHHHHHHHHcCCeE--EEeCCCcccccCcc
Confidence 467899999999999999999999999875 45566676655543
No 104
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=20.98 E-value=3.2e+02 Score=19.51 Aligned_cols=42 Identities=26% Similarity=0.461 Sum_probs=29.3
Q ss_pred HHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCC
Q 029386 119 LLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGR 163 (194)
Q Consensus 119 ~l~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V~DAGr 163 (194)
....+...|..-+.+..++.+++.+ -.++.++++.++.|.+.
T Consensus 51 ~~~~~~~~~~~vi~is~d~~~~~~~---~~~~~~~~~~~~~D~~~ 92 (124)
T PF00578_consen 51 LYKKYKDKGVQVIGISTDDPEEIKQ---FLEEYGLPFPVLSDPDG 92 (124)
T ss_dssp HHHHHHTTTEEEEEEESSSHHHHHH---HHHHHTCSSEEEEETTS
T ss_pred HhhhhccceEEeeecccccccchhh---hhhhhccccccccCcch
Confidence 3456666677777887777665544 44456788999999765
No 105
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=20.97 E-value=95 Score=29.29 Aligned_cols=66 Identities=21% Similarity=0.395 Sum_probs=46.2
Q ss_pred EEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcC
Q 029386 82 LALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADA 161 (194)
Q Consensus 82 mVlVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V~DA 161 (194)
|-+||-.|..|....++.++.+|-+.-..++ ..+.-+|| |++...+.-=.-.|...||| ++.|+
T Consensus 298 m~v~~~~e~~~~~d~li~~~~~agL~y~~~~-------------~r~tslvv-~n~~~~~~gk~~~a~~~gip--l~~d~ 361 (377)
T PRK05601 298 MEVVVAPEITMDPDIIIQAIVRAGLAYSEKL-------------TRQTSVVV-CNQTRDLDGKAMHAQRKGIP--LLSDV 361 (377)
T ss_pred cEEEEeCCccCCHHHHHHHHHHccchhhhcc-------------ccceeEEE-eCCCCCccchhhhhhhcCCC--ccCHH
Confidence 7899999999999999999999988744433 23344443 66655555444567778887 44565
Q ss_pred CC
Q 029386 162 GR 163 (194)
Q Consensus 162 Gr 163 (194)
-|
T Consensus 362 ~f 363 (377)
T PRK05601 362 AF 363 (377)
T ss_pred HH
Confidence 44
No 106
>TIGR03426 shape_MreD rod shape-determining protein MreD. Members of this protein family are the MreD protein of bacterial cell shape determination. Most rod-shaped bacteria depend on MreB and RodA to achieve either a rod shape or some other non-spherical morphology such as coil or stalk formation. MreD is encoded in an operon with MreB, and often with RodA and PBP-2 as well. It is highly hydrophobic (therefore somewhat low-complexity) and highly divergent, and therefore sometimes tricky to discover by homology, but this model finds most examples.
Probab=20.92 E-value=59 Score=25.40 Aligned_cols=17 Identities=29% Similarity=0.640 Sum_probs=14.7
Q ss_pred chhhHHHHhhhhhhcCC
Q 029386 34 PGLVIGFIFGMLLDLSK 50 (194)
Q Consensus 34 ~g~~~g~~~g~~~~~~~ 50 (194)
.|+..||++|+.+|+-.
T Consensus 49 ~~~~~~f~~Gll~D~~~ 65 (154)
T TIGR03426 49 VGIGTAFVLGLLQDVLS 65 (154)
T ss_pred cchHHHHHHHHHHHHhc
Confidence 48999999999999843
No 107
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=20.89 E-value=3.1e+02 Score=27.17 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=31.8
Q ss_pred HHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEE
Q 029386 119 LLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVA 159 (194)
Q Consensus 119 ~l~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V~ 159 (194)
.+..|...|. ++++-|++.+....|.+.....|+++..+.
T Consensus 438 ~L~~~~~~g~-~viIf~~t~~~ae~L~~~L~~~gi~~~~~h 477 (652)
T PRK05298 438 EIRKRVAKGE-RVLVTTLTKRMAEDLTDYLKELGIKVRYLH 477 (652)
T ss_pred HHHHHHhCCC-EEEEEeCCHHHHHHHHHHHhhcceeEEEEE
Confidence 4567877665 566679999999999999999999877664
No 108
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=20.84 E-value=6.4e+02 Score=22.95 Aligned_cols=94 Identities=23% Similarity=0.195 Sum_probs=59.6
Q ss_pred CCCCeeEEEEEeCCCC-------------CChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHHhCCCCeEEEecCCHHHHH
Q 029386 76 GDQDLKLALVVRQDLK-------------MGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMN 142 (194)
Q Consensus 76 ~~~~~kmVlVVR~DL~-------------Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~~~G~~KIVLk~~~e~eL~ 142 (194)
.+++++.++++. +.. .+....+.+.+|+|+....-. +.++++++.-.++..+--- +.+=...+.
T Consensus 157 ~~~~~~~v~~iP-~~e~sT~~aR~vLP~~~~~~daV~n~s~~a~lv~al~-~~~~~l~~~~~~D~ihepy-R~~L~P~~~ 233 (299)
T COG0083 157 FPSDLKLVVVIP-NFEVSTAEARKVLPKSYSRKDAVFNLSRAALLVAALL-EGDPELLRAMMKDVIHEPY-RAKLVPGYA 233 (299)
T ss_pred CCcceEEEEEeC-CccccHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHhccccchhh-hhhhCccHH
Confidence 457888888887 543 357889999999999877544 4456655544332211100 111123456
Q ss_pred HHHHHHHHCCCCeEEEEcCCCCcccCCCeeEEEecCCC
Q 029386 143 KLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGP 180 (194)
Q Consensus 143 ~L~~~A~~~glp~~~V~DAGrTev~pgs~TvlAIGP~p 180 (194)
++.+.|.+.|---..|--|| .|++++-+..
T Consensus 234 ~v~~~a~~~gA~g~~lSGAG--------PTi~al~~~~ 263 (299)
T COG0083 234 EVREAALEAGALGATLSGAG--------PTVFALADES 263 (299)
T ss_pred HHHHHHhhCCceEEEEecCC--------CeEEEEeccc
Confidence 66777888887667777777 6888886653
No 109
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=20.77 E-value=2.3e+02 Score=24.36 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=31.6
Q ss_pred CHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEc
Q 029386 116 DRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVAD 160 (194)
Q Consensus 116 ~~~~l~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V~D 160 (194)
+++.++.|...|.+..+=.|++.++|..+.+. .|+. +|.|
T Consensus 217 ~~~~v~~~~~~G~~v~vWTVn~~~~~~~l~~~---~GVd--iiTD 256 (258)
T cd08573 217 SSAYVRYWRARGIRVIAWTVNTPTEKQYFAKT---LNVP--YITD 256 (258)
T ss_pred CHHHHHHHHHCCCEEEEEecCCHHHHHHHHHH---hCCC--eecC
Confidence 56788899889999999999999998876651 4876 5655
No 110
>PF10166 DUF2368: Uncharacterised conserved protein (DUF2368); InterPro: IPR019319 This family is conserved from nematodes to humans. The function is not known.
Probab=20.64 E-value=52 Score=26.48 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=22.1
Q ss_pred cCCCccchhhHHHHhhhhhhcCCCC
Q 029386 28 RPENFIPGLVIGFIFGMLLDLSKPG 52 (194)
Q Consensus 28 ~~~~~~~g~~~g~~~g~~~~~~~~~ 52 (194)
+|.-++|=+-++|++||-||+.++.
T Consensus 73 ~~~~l~PlvPL~fv~~Yq~D~ayG~ 97 (131)
T PF10166_consen 73 NPLFLIPLVPLTFVLGYQYDMAYGT 97 (131)
T ss_pred CcchhhhHHHHHHHHHHHHHHHhhH
Confidence 5788889999999999999997775
No 111
>PRK12754 transketolase; Reviewed
Probab=20.46 E-value=2.9e+02 Score=27.74 Aligned_cols=44 Identities=16% Similarity=0.270 Sum_probs=35.3
Q ss_pred HHHHHHHHhCCCCeEE-EecCCHHHHHHHHHHHHH-CCCCeEEEEc
Q 029386 117 RHLLRKWEQCGQPKIV-VTCKNQQEMNKLWEVAEN-TGLPTFVVAD 160 (194)
Q Consensus 117 ~~~l~~W~~~G~~KIV-Lk~~~e~eL~~L~~~A~~-~glp~~~V~D 160 (194)
++..++|+..|+..+. +-..|.+++.+..++|+. .+-|+.+++.
T Consensus 199 ~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~~~~~Pt~I~~~ 244 (663)
T PRK12754 199 DDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARAVTDKPSLLMCK 244 (663)
T ss_pred ccHHHHHHhcCCeEEeeECCCCHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 4567899999999886 788899999888877765 4679999884
No 112
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=20.40 E-value=3.1e+02 Score=24.82 Aligned_cols=69 Identities=28% Similarity=0.387 Sum_probs=43.0
Q ss_pred HHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCCccc-CC----------CeeEEEecCCCccchh
Q 029386 117 RHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVS-AG----------SKTVLAIGPGPKSLVD 185 (194)
Q Consensus 117 ~~~l~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V~DAGrTev~-pg----------s~TvlAIGP~p~~~Id 185 (194)
..++..|.-. .+-+...-.|+++........-..|-...+|.|||-.-|. || -+.|..| |+|.+.+-
T Consensus 43 ~~LL~~~~I~-~~~is~h~hne~~~~~~li~~l~~g~~valVSDAG~P~ISDPG~~LV~~a~~~gi~V~~l-PG~sA~~t 120 (275)
T COG0313 43 RKLLSHLGIK-TPLISYHEHNEKEKLPKLIPLLKKGKSVALVSDAGTPLISDPGYELVRAAREAGIRVVPL-PGPSALIT 120 (275)
T ss_pred HHHHHHhCCC-CceecccCCcHHHHHHHHHHHHhcCCeEEEEecCCCCcccCccHHHHHHHHHcCCcEEec-CCccHHHH
Confidence 4456666532 2344444456666665444444556578999999986665 66 3577777 88877665
Q ss_pred hh
Q 029386 186 SV 187 (194)
Q Consensus 186 ~i 187 (194)
.+
T Consensus 121 AL 122 (275)
T COG0313 121 AL 122 (275)
T ss_pred HH
Confidence 44
No 113
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=20.29 E-value=1.7e+02 Score=21.54 Aligned_cols=26 Identities=8% Similarity=0.029 Sum_probs=22.6
Q ss_pred eEEEecCCHHHHHHHHHHHHHCCCCe
Q 029386 130 KIVVTCKNQQEMNKLWEVAENTGLPT 155 (194)
Q Consensus 130 KIVLk~~~e~eL~~L~~~A~~~glp~ 155 (194)
.+.++++|.+++.++.+++++.|++.
T Consensus 62 ~iaf~v~~~~dv~~~~~~l~~~G~~~ 87 (124)
T cd08361 62 ASGFELRDDDALESAATELEQYGHEV 87 (124)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCce
Confidence 47889999999999999999999764
No 114
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=20.27 E-value=1.7e+02 Score=21.71 Aligned_cols=31 Identities=13% Similarity=-0.041 Sum_probs=26.4
Q ss_pred CCCCeEEEecCCHHHHHHHHHHHHHCCCCeE
Q 029386 126 CGQPKIVVTCKNQQEMNKLWEVAENTGLPTF 156 (194)
Q Consensus 126 ~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~ 156 (194)
.|..-+.+.++|.+++.++.+.+++.|++..
T Consensus 61 ~g~~hiaf~v~d~~~~~~~~~~l~~~G~~~~ 91 (134)
T cd08360 61 AGFHHAAFEVGDIDEVMLGGNHMLRAGYQTG 91 (134)
T ss_pred CcceEEEEEeCCHHHHHHHHHHHHHcCCccc
Confidence 4566799999999999999999999998743
No 115
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=20.25 E-value=2.5e+02 Score=19.07 Aligned_cols=55 Identities=22% Similarity=0.319 Sum_probs=35.9
Q ss_pred HHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCCcccCCCeeEEEecCC
Q 029386 121 RKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPG 179 (194)
Q Consensus 121 ~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V~DAGrTev~pgs~TvlAIGP~ 179 (194)
...+..|... .+-..+ ..+....+.|+..|+|+.++.+ ..+...|++++--...+
T Consensus 22 ~~Lr~~g~~v-~~d~~~-~~~~~~~~~a~~~g~~~~iiig--~~e~~~~~v~lk~~~~~ 76 (91)
T cd00860 22 KKLSDAGIRV-EVDLRN-EKLGKKIREAQLQKIPYILVVG--DKEVETGTVSVRTRDGG 76 (91)
T ss_pred HHHHHCCCEE-EEECCC-CCHHHHHHHHHHcCCCEEEEEC--cchhhCCEEEEEECCCC
Confidence 3344456533 332333 5677778889999999999985 34667777777665444
No 116
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=20.23 E-value=2.6e+02 Score=23.65 Aligned_cols=46 Identities=20% Similarity=0.240 Sum_probs=32.6
Q ss_pred eEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCCcccCCCeeEEEecCC
Q 029386 130 KIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPG 179 (194)
Q Consensus 130 KIVLk~~~e~eL~~L~~~A~~~glp~~~V~DAGrTev~pgs~TvlAIGP~ 179 (194)
.|+++.++++...++.+..++.|+...-+-.++.++ +.+|+-||--
T Consensus 51 ~i~~~~d~~~~~~~i~~~~e~~Gi~I~~~dg~~~~~----~~~vvLIGhi 96 (170)
T COG2061 51 QIVFEGDREDKDAKIIRLLEEEGIIIIRFDGARLRE----KTDVVLIGHI 96 (170)
T ss_pred EEEEEecccHHHHHHHHHHHhCCcEEEEecCcCcce----eEeEEEEEee
Confidence 367888888888898888889997655543444443 5677777753
No 117
>PTZ00365 60S ribosomal protein L7Ae-like; Provisional
Probab=20.15 E-value=96 Score=27.98 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=35.0
Q ss_pred hCCCCeEEEecCCHHHHH--H-HHHHHHHCCCCeEEEEcCCCCcccCC--CeeEEEe
Q 029386 125 QCGQPKIVVTCKNQQEMN--K-LWEVAENTGLPTFVVADAGRTQVSAG--SKTVLAI 176 (194)
Q Consensus 125 ~~G~~KIVLk~~~e~eL~--~-L~~~A~~~glp~~~V~DAGrTev~pg--s~TvlAI 176 (194)
+.+..+.||-+.|.+... . |-..++..|||++.+-+..+=-..=| +.||+||
T Consensus 145 ekkKAkLVIIA~DVsP~t~kk~LP~LC~k~~VPY~iv~sK~eLG~AIGkktraVVAI 201 (266)
T PTZ00365 145 EYKKAKLVVIAHDVDPIELVCFLPALCRKKEVPYCIIKGKSRLGKLVHQKTAAVVAI 201 (266)
T ss_pred HhCCccEEEEeCCCCHHHHHHHHHHHHhccCCCEEEECCHHHHHHHhCCCCceEEEe
Confidence 468889999898865544 4 34889999999998875421001123 5788887
No 118
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=20.10 E-value=60 Score=23.14 Aligned_cols=17 Identities=35% Similarity=0.733 Sum_probs=11.7
Q ss_pred ccchhhHHHHhhhhhhc
Q 029386 32 FIPGLVIGFIFGMLLDL 48 (194)
Q Consensus 32 ~~~g~~~g~~~g~~~~~ 48 (194)
..-|+++|+++|+.+-+
T Consensus 62 l~l~~~~Gl~lgi~~~~ 78 (82)
T PF13807_consen 62 LALGLFLGLILGIGLAF 78 (82)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34577788888876654
No 119
>PRK10404 hypothetical protein; Provisional
Probab=20.08 E-value=62 Score=24.75 Aligned_cols=21 Identities=33% Similarity=0.697 Sum_probs=15.4
Q ss_pred cccceeeeccCCCccchhhHHHHhhhhh
Q 029386 19 EKVSLAVSFRPENFIPGLVIGFIFGMLL 46 (194)
Q Consensus 19 ~~~~~~~~~~~~~~~~g~~~g~~~g~~~ 46 (194)
+.||=++.+ +..+||++|+++
T Consensus 78 e~Pw~avGi-------aagvGlllG~Ll 98 (101)
T PRK10404 78 EKPWQGIGV-------GAAVGLVLGLLL 98 (101)
T ss_pred hCcHHHHHH-------HHHHHHHHHHHH
Confidence 458877664 667888888775
No 120
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=20.04 E-value=66 Score=22.67 Aligned_cols=53 Identities=17% Similarity=0.334 Sum_probs=36.7
Q ss_pred HHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCCcccCCCeeEEEec
Q 029386 121 RKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIG 177 (194)
Q Consensus 121 ~~W~~~G~~KIVLk~~~e~eL~~L~~~A~~~glp~~~V~DAGrTev~pgs~TvlAIG 177 (194)
..-+..|.+ +.+.. +...+.+-...|...|+|+.+|.. -.|+..|++++--..
T Consensus 23 ~~L~~~gi~-v~~d~-~~~~~~k~~~~a~~~g~p~~iiiG--~~e~~~~~v~vk~~~ 75 (94)
T PF03129_consen 23 NKLRKAGIR-VELDD-SDKSLGKQIKYADKLGIPFIIIIG--EKELENGTVTVKDRD 75 (94)
T ss_dssp HHHHHTTSE-EEEES-SSSTHHHHHHHHHHTTESEEEEEE--HHHHHTTEEEEEETT
T ss_pred HHHHHCCCE-EEEEC-CCCchhHHHHHHhhcCCeEEEEEC--chhHhCCEEEEEECC
Confidence 333455643 34444 346788888889999999999984 457777888877653
No 121
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=20.01 E-value=63 Score=25.25 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=16.1
Q ss_pred cccceeeeccCCCccchhhHHHHhhhhhh
Q 029386 19 EKVSLAVSFRPENFIPGLVIGFIFGMLLD 47 (194)
Q Consensus 19 ~~~~~~~~~~~~~~~~g~~~g~~~g~~~~ 47 (194)
+.||-++.. |..|||++|+++.
T Consensus 81 e~PWq~VGv-------aAaVGlllGlLls 102 (104)
T COG4575 81 ENPWQGVGV-------AAAVGLLLGLLLS 102 (104)
T ss_pred cCCchHHHH-------HHHHHHHHHHHHh
Confidence 557877654 6778888888874
Done!