BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029389
(194 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 144 CPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVFDETT 194
CP C E+Y L C H +H SCI W+E+ +CPVC K + T
Sbjct: 18 CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA 68
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 140 DEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVC 184
E CP C EY + C H++H C+ W+++S TCPVC
Sbjct: 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVC 83
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 142 DVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCS 185
++C CLE++ + + C+H +H C+ +W+E CP+C+
Sbjct: 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCN 59
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 144 CPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVC 184
CP CLE+ + N + C H + CI W+ ++PTCP+C
Sbjct: 8 CPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLC 46
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVC 184
++ +C C+ ++ V C H +H C+ +W++ + TCP+C
Sbjct: 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPIC 66
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSK 186
E+E C C EY +E + C H + CI EWM+R CP+C K
Sbjct: 51 ENELQCIIC-SEYFIE--AVTLNCAHSFCSYCINEWMKRKIECPICRK 95
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSK 186
E+E C C EY +E + C H + CI EWM+R CP+C K
Sbjct: 51 ENELQCIIC-SEYFIE--AVTLNCAHSFCSYCINEWMKRKIECPICRK 95
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSK 186
E+E C C EY +E + C H + CI EWM+R CP+C K
Sbjct: 62 ENELQCIIC-SEYFIE--AVTLNCAHSFCSYCINEWMKRKIECPICRK 106
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 34.3 bits (77), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 144 CPTCLEEY-TLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189
C CL E E + + +C H +H C+ W+ TCP+C +V
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 138 PEDEDVCPTCLEEYT--LENPKIV--TQCRHHYHLSCIYEWMERSPTCPVCSK 186
P CP C++ Y+ ++N +++ T+C H + C+ + ++ + TCP C K
Sbjct: 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRK 64
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 138 PEDEDVCPTCLEEYT--LENPKIV--TQCRHHYHLSCIYEWMERSPTCPVCSK 186
P CP C++ Y+ ++N +++ T+C H + C+ + ++ + TCP C K
Sbjct: 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRK 59
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 144 CPTCLEEYT--LENPKIV--TQCRHHYHLSCIYEWMERSPTCPVCSK 186
CP C++ Y+ ++N +++ T+C H + C+ + ++ + TCP C K
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRK 56
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 144 CPTCLEEYT--LENPKIV--TQCRHHYHLSCIYEWMERSPTCPVCSK 186
CP C++ Y+ ++N +++ T+C H + C+ + ++ + TCP C K
Sbjct: 75 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRK 121
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 144 CPTCLEEYT--LENPKIV--TQCRHHYHLSCIYEWMERSPTCPVCSK 186
CP C++ Y+ ++N +++ T+C H + C+ + ++ + TCP C K
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRK 52
>pdb|2CSY|A Chain A, Solution Structure Of The Ring Domain Of The Zinc Finger
Protein 183-Like 1
Length = 81
Score = 30.4 bits (67), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 152 TLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSK 186
+NP +VT+CRH++ SC E +P C +C +
Sbjct: 24 AFQNP-VVTKCRHYFCESCALEHFRATPRCYICDQ 57
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 30.4 bits (67), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 142 DVCPTCLEEYTLENPKIVT-QCRHHYHLSCIYEWMERSPTCPVCSKVMVF 190
D C C E E+ +V +C H +H C+ W++++ CP+C + V
Sbjct: 27 DACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 141 EDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEW---MERSPTCPVC 184
E C CLE L+ P I+ +C H++ +CI W +ER CPVC
Sbjct: 15 EASCSVCLE--YLKEPVII-ECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 140 DEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189
DE+ C C++ ++ C H + CI +W +R CP+C M
Sbjct: 14 DEEECCICMDGRA----DLILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 137 GPEDEDVCPTCLEE-YTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCS 185
G CP CLE+ +T V C H H +C E ++ CP+CS
Sbjct: 1 GSSGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCS 50
>pdb|1Z95|A Chain A, Crystal Structure Of The Androgen Receptor Ligand-Binding
Domain W741l Mutant Complex With R-Bicalutamide
Length = 246
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 147 CLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189
EY + ++ +QC HLS + W++ +P +C K ++
Sbjct: 98 VFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALL 140
>pdb|2AX8|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain W741l Mutant In Complex With S-1
Length = 256
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 147 CLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189
EY + ++ +QC HLS + W++ +P +C K ++
Sbjct: 106 VFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALL 148
>pdb|2AX6|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain T877a Mutant In Complex With Hydroxyflutamide
pdb|2AX7|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain T877a Mutant In Complex With S-1
Length = 256
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 147 CLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189
EY + ++ +QC HLS + W++ +P +C K ++
Sbjct: 106 VFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALL 148
>pdb|3L3X|A Chain A, Crystal Structure Of Dht-Bound Androgen Receptor In
Complex With The First Motif Of Steroid Receptor
Coactivator 3
pdb|3L3Z|A Chain A, Crystal Structure Of Dht-Bound Androgen Receptor In
Complex With The Third Motif Of Steroid Receptor
Coactivator 3
Length = 250
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 147 CLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189
EY + ++ +QC HLS + W++ +P +C K ++
Sbjct: 101 VFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALL 143
>pdb|2OZ7|A Chain A, Crystal Structure Of The Human Androgen Receptor T877a
Mutant Ligand- Binding Domain With Cyproterone Acetate
Length = 249
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 147 CLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189
EY + ++ +QC HLS + W++ +P +C K ++
Sbjct: 99 VFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALL 141
>pdb|2AX9|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With R-3
pdb|2AXA|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With S-1
pdb|2YLO|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|2YLP|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|2YLQ|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|3ZQT|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|4HLW|A Chain A, Targeting The Binding Function 3 (bf3) Site Of The Human
Androgen Receptor Through Virtual Screening. 2.
Development Of 2-((2- Phenoxyethyl)
Thio)-1h-benzoimidazole Derivatives
Length = 256
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 147 CLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189
EY + ++ +QC HLS + W++ +P +C K ++
Sbjct: 106 VFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALL 148
>pdb|1T5Z|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain (Lbd) With Dht And A Peptide Derived From Its
Physiological Coactivator Ara70
pdb|1T63|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain With Dht And A Peptide Derived From Its
Physiological Coactivator Grip1 Nr Box3
pdb|1T65|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain With Dht And A Peptide Derived Form Its
Physiological Coactivator Grip1 Nr Box 2 Bound In A Non-
Helical Conformation
pdb|2PIO|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIP|L Chain L, Androgen Receptor Lbd With Small Molecule
pdb|2PIQ|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIR|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIT|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIU|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIV|A Chain A, Androgen Receptor With Small Molecule
pdb|2PIW|A Chain A, Androgen Receptor With Small Molecule
pdb|2PIX|A Chain A, Ar Lbd With Small Molecule
pdb|2PKL|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2QPY|A Chain A, Ar Lbd With Small Molecule
Length = 251
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 147 CLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189
EY + ++ +QC HLS + W++ +P +C K ++
Sbjct: 101 VFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALL 143
>pdb|3RLL|A Chain A, Crystal Structure Of The T877a Androgen Receptor Ligand
Binding Domain In Complex With
(S)-N-(4-Cyano-3-(Trifluoromethyl)phenyl)-3-(4-
Cyanonaphthalen-1-Yloxy)-2-Hydroxy-2-Methylpropanamide
Length = 247
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 147 CLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189
EY + ++ +QC HLS + W++ +P +C K ++
Sbjct: 99 VFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALL 141
>pdb|2HVC|A Chain A, The Crystal Structure Of Ligand-Binding Domain (Lbd) Of
Human Androgen Receptor In Complex With A Selective
Modulator Lgd2226
Length = 250
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 147 CLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189
EY + ++ +QC HLS + W++ +P +C K ++
Sbjct: 101 VFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALL 143
>pdb|1I38|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain T877a Mutant Complex With
Dihydrotestosterone
pdb|1XNN|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain T877a Mutant Complex With (3a-Alpha-,4-
Alpha
7-Alpha-,7a-Alpha-)-3a,4,7,7a-Tetrahydro-2-(4-Nitro-
1-Naphthalenyl)-4,7-Ethano-1h-Isoindole-1,3(2h)-Dione
Length = 260
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 147 CLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189
EY + ++ +QC HLS + W++ +P +C K ++
Sbjct: 110 VFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALL 152
>pdb|1GS4|A Chain A, Structural Basis For The Glucocorticoid Response In A
Mutant Human Androgen Receptor (Arccr) Derived From An
Androgen-Independent Prostate Cancer
Length = 248
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 147 CLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189
EY + ++ +QC HLS + W++ +P +C K ++
Sbjct: 100 VFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALL 142
>pdb|1I37|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain Complex With Dihydrotestosterone
pdb|2IHQ|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domian Complex With An N-Aryl-
Hydroxybicyclohydantoin
pdb|2NW4|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain Complex With Bms-564929
pdb|3G0W|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain Complex With An N-Aryl-Oxazolidin 2-Imine
Inhibitor
Length = 260
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 147 CLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189
EY + ++ +QC HLS + W++ +P +C K ++
Sbjct: 110 VFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALL 152
>pdb|1XJ7|A Chain A, Complex Androgen Receptor Lbd And Rac3 Peptide
pdb|2Q7I|A Chain A, The Wild Type Androgen Receptor Ligand Binding Domain
Bound With Testosterone And An Ar 20-30 Peptide
pdb|2Q7J|A Chain A, The Wild Type Androgen Receptor Ligand Binding Domain
Bound With Testosterone And A Tif2 Box 3 Coactivator
Peptide 740-753
Length = 257
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 147 CLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189
EY + ++ +QC HLS + W++ +P +C K ++
Sbjct: 107 VFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALL 149
>pdb|1XOW|A Chain A, Crystal Structure Of The Human Androgen Receptor Ligand
Binding Domain Bound With An Androgen Receptor Nh2-
Terminal Peptide, Ar20-30, And R1881
pdb|1XQ3|A Chain A, Crystal Structure Of The Human Androgen Receptor Ligand
Binding Domain Bound With R1881
pdb|2AO6|A Chain A, Crystal Structure Of The Human Androgen Receptor Ligand
Binding Domain Bound With Tif2(Iii) 740-753 Peptide And
R1881
pdb|3B5R|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm C-31
pdb|3B65|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-24
pdb|3B66|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-21
pdb|3B67|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm C-23
pdb|3B68|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-4
pdb|2YHD|A Chain A, Human Androgen Receptor In Complex With Af2 Small Molecule
Inhibitor
pdb|3V4A|A Chain A, Structure Of Ar Lbd With Activator Peptide And Sarm
Inhibitor 2
Length = 249
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 147 CLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189
EY + ++ +QC HLS + W++ +P +C K ++
Sbjct: 99 VFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALL 141
>pdb|1T73|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxff Motif
pdb|1T74|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Wxxlf Motif
pdb|1T76|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Wxxvw Motif
pdb|1T79|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxlw Motif
pdb|1T7F|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Lxxll Motif
pdb|1T7M|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxyf Motif
pdb|1T7R|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxlf Motif
pdb|1T7T|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With 5-Alpha Dihydrotestosterone
Length = 269
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 147 CLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189
EY + ++ +QC HLS + W++ +P +C K ++
Sbjct: 119 VFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALL 161
>pdb|2Z4J|A Chain A, Crystal Structure Of Ar Lbd With Shp Peptide Nr Box 2
Length = 248
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 147 CLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189
EY + ++ +QC HLS + W++ +P +C K ++
Sbjct: 99 VFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALL 141
>pdb|3RLJ|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-22
Length = 247
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 147 CLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189
EY + ++ +QC HLS + W++ +P +C K ++
Sbjct: 99 VFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALL 141
>pdb|1E3G|A Chain A, Human Androgen Receptor Ligand Binding In Complex With The
Ligand Metribolone (R1881)
Length = 263
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 147 CLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189
EY + ++ +QC HLS + W++ +P +C K ++
Sbjct: 113 VFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALL 155
>pdb|2Q7K|A Chain A, The Androgen Receptor Prostate Cancer Mutant H874y Ligand
Binding Domain Bound With Testosterone And An Ar 20-30
Peptide
pdb|2Q7L|A Chain A, The Androgen Receptor Prostate Cancer Mutant H874y Ligand
Binding Domain Bound With Testosterone And A Tif2 Box3
Coactivator Peptide 740-753
Length = 257
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 147 CLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189
EY + ++ +QC HLS + W++ +P +C K ++
Sbjct: 107 VFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALL 149
>pdb|2AM9|A Chain A, Crystal Structure Of Human Androgen Receptor Ligand
Binding Domain In Complex With Testosterone
pdb|2AMA|A Chain A, Crystal Structure Of Human Androgen Receptor Ligand
Binding Domain In Complex With Dihydrotestosterone
pdb|2AMB|A Chain A, Crystal Structure Of Human Androgen Receptor Ligand
Binding Domain In Complex With Tetrahydrogestrinone
pdb|2PNU|A Chain A, Crystal Structure Of Human Androgen Receptor
Ligand-Binding Domain In Complex With Em-5744
pdb|3V49|A Chain A, Structure Of Ar Lbd With Activator Peptide And Sarm
Inhibitor 1
Length = 266
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 147 CLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189
EY + ++ +QC HLS + W++ +P +C K ++
Sbjct: 116 VFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALL 158
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 144 CPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVC 184
C C E + + I+ QC H+Y CI +++ CP C
Sbjct: 25 CGICFEYFNIA--MIIPQCSHNYCSLCIRKFLSYKTQCPTC 63
>pdb|2K7R|A Chain A, N-Terminal Domain Of The Bacillus Subtilis
Helicase-Loading Protein Dnai
Length = 106
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCS 185
+D+DV + + EN +++ Q L+ +YE++E+S C CS
Sbjct: 30 KDQDV-----QAFLKENEEVIDQKMIEKSLNKLYEYIEQSKNCSYCS 71
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 144 CPTCLEEYTLEN--PKIVTQCRHHYHLSCIYEWMERSPT---CPVCSKVMVFDETT 194
CP C+E +T E PK++ C H C+ + + S CP CSK+ T
Sbjct: 18 CPICMESFTEEQLRPKLL-HCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLT 72
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 162 CRHHYHLSCIYEWMERSPTCPVCSKVMVFDE 192
C H +H CI W++ CP+ ++ F +
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPLDNREWEFQK 114
>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human
Cellular Modulator Of Immune Recognition Protein
Length = 80
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 138 PEDEDVCPTCLEEYTLENPKIV----TQCRHHYHLSCIYEWMERSPT--CPVCSKVMVFD 191
P +D+C C E E+P I T H H +C+ +W++ S T C +C + +
Sbjct: 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 162 CRHHYHLSCIYEWMERSPTCPVCSKVMVFDE 192
C H +H CI W++ CP+ ++ F +
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPLDNREWEFQK 103
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 162 CRHHYHLSCIYEWMERSPTCPVC 184
C H +H C+ +W+ + CP+C
Sbjct: 35 CMHLFHQVCVDQWLITNKKCPIC 57
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 162 CRHHYHLSCIYEWMERSPTCPVCSKVMVFDE 192
C H +H CI W++ CP+ ++ F +
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPLDNREWEFQK 103
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 162 CRHHYHLSCIYEWMERSPTCPVCSKVMVFDE 192
C H +H CI W++ CP+ ++ F +
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPLDNREWEFQK 105
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 162 CRHHYHLSCIYEWMERSPTCPVCSKVMVFDE 192
C H +H CI W++ CP+ ++ F +
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPLDNREWEFQK 95
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 159 VTQCRHHYHLSCIYEWMERSPTCPVC 184
+ +C H + +CI ++E S CP+C
Sbjct: 31 IIECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 159 VTQCRHHYHLSCIYEWMERSPTCPVC 184
+ +C H + +CI ++E S CP+C
Sbjct: 27 IIECLHSFCKTCIVRYLETSKYCPIC 52
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 162 CRHHYHLSCIYEWMERSPTCPVCSKVMVFDE 192
C H +H CI W++ CP+ ++ F +
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPLDNREWEFQK 97
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 159 VTQCRHHYHLSCIYEWMERSPTCPVC 184
+ +C H + +CI ++E S CP+C
Sbjct: 31 IIECLHSFCKTCIVRYLETSKYCPIC 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.459
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,781,029
Number of Sequences: 62578
Number of extensions: 139579
Number of successful extensions: 274
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 220
Number of HSP's gapped (non-prelim): 59
length of query: 194
length of database: 14,973,337
effective HSP length: 94
effective length of query: 100
effective length of database: 9,091,005
effective search space: 909100500
effective search space used: 909100500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)