BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029389
(194 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LE94|RING3_ARATH E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana
GN=At3g02290 PE=2 SV=1
Length = 231
Score = 120 bits (301), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 110/230 (47%), Gaps = 37/230 (16%)
Query: 1 MGSLCCCFRVNDHEDSSLSNSNDNEGCRCPNCRLHTLLNKYTALFKKDETLAGPSDAHQG 60
MG + CFRV D ++ NS+ C C C H LN Y ++F++ ET + PS
Sbjct: 1 MGCVSSCFRVEDIDEYMNPNSSVYRNCPCIRCLAHNFLNLYISVFRRGETRSLPSSVQAT 60
Query: 61 AA----------LSTSNSSSSSPSSCNILPEIVTS--------------QLRTMRFDPQL 96
A+ LS + S+ P + P S ++ +R D
Sbjct: 61 ASITSSSSHDNFLSEAFRSTPRPLPYDADPRYFRSLVSRREKGSSHSHEEVEPLRSDSDA 120
Query: 97 LHKQLRYGD---STNCPERAEEDG----------RLTKLERLDLLLKSPLRKLGPEDEDV 143
+ G + N +++D R+ + ++ S + EDEDV
Sbjct: 121 DSESFGVGGCKWANNKSTLSDKDSKEEYSSKSSLRILRSRSKSIMADSENMYILSEDEDV 180
Query: 144 CPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVFDET 193
CPTCLEEYT ENPKIVT+C HH+HLSCIYEWMERS CPVC KVM F+ET
Sbjct: 181 CPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFNET 230
>sp|Q4TU14|RHF1A_ARATH E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana GN=RHF1A
PE=1 SV=1
Length = 371
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 34/50 (68%)
Query: 141 EDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVF 190
+D C CLE +TL++P VT C+H YHL CI EW +RS CP+C ++ V
Sbjct: 43 DDACSICLEPFTLQDPSTVTSCKHEYHLQCIIEWSQRSKECPICWQLFVL 92
>sp|Q9ZT42|RHF2A_ARATH E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana GN=RHF2A
PE=2 SV=1
Length = 375
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 141 EDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVFDETT 194
+D C CLE + +P +T C+H YHL CI EW +RS CP+C + + + T
Sbjct: 30 DDACSICLESFCESDPSTLTSCKHEYHLQCILEWCQRSSQCPMCWQSISLKDPT 83
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 144 CPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVFDETT 194
CP C E+YT+E C H +H SCI W+E TCPVC K + +++T
Sbjct: 229 CPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDST 279
>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1
SV=2
Length = 304
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 144 CPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVFDETT 194
CP C E+YT+E C H +H SCI W+E TCPVC K + +++T
Sbjct: 228 CPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDST 278
>sp|Q5XF85|ATL42_ARATH E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42
PE=1 SV=2
Length = 432
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 120 TKLERLDLLLKSPLRKLGPEDEDVCPTCLEEY-TLENPKIVTQCRHHYHLSCIYEWMERS 178
T +E L L S L+ G + C CL ++ ++E +++ +CRH +H+ CI +W+E+
Sbjct: 101 TAIESLPLFRFSALK--GSKQGLDCSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLEQH 158
Query: 179 PTCPVC 184
TCP+C
Sbjct: 159 ATCPLC 164
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 126 DLLLKSPLRKLGPEDE-DVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERS-PTCPV 183
D L K P+ K DE DVC CLEEY + + C H YH C+ W+ ++ TCPV
Sbjct: 221 DQLKKLPVHKFKKGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPV 280
Query: 184 CSKVMV 189
C + +V
Sbjct: 281 CKQKVV 286
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 119 LTKLERLDLLLKSPLRKLGPEDE-DVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMER 177
LTK E++D L +R G D C C+ EYT N C H YH+ CI W+
Sbjct: 548 LTK-EQIDNLA---MRSFGENDALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSE 603
Query: 178 SPTCPVCSKVMV 189
+ TCP+C + ++
Sbjct: 604 NSTCPICRRAVL 615
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 126 DLLLKSPLRKLGPEDE-DVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERS-PTCPV 183
D L K P+ K DE DVC CLEEY + + C H YH C+ W+ ++ TCPV
Sbjct: 221 DQLKKLPVHKFKKGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPV 280
Query: 184 CSKVMV 189
C + +V
Sbjct: 281 CKQKVV 286
>sp|Q9M2S6|SDIR1_ARATH E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1
PE=1 SV=1
Length = 273
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%)
Query: 135 KLGPEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVC 184
K G EDE C CLE+ T+ C H +H CI W+ + TCPVC
Sbjct: 202 KKGTEDELTCSVCLEQVTVGEIVRTLPCLHQFHAGCIDPWLRQQGTCPVC 251
>sp|Q8GT75|NIP1_ARATH NEP1-interacting protein 1 OS=Arabidopsis thaliana GN=NIP1 PE=1
SV=2
Length = 236
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 74/182 (40%), Gaps = 29/182 (15%)
Query: 34 LHTLLNKYTALFKKDETLAG-----PSDAHQGAALSTSNSSSS--------SPSSC---- 76
+ TLL T ET +G A GA S SS S C
Sbjct: 53 VGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWKSNESRFGCLLYL 112
Query: 77 -NILPEIVTSQLRTMRFDPQLL---HKQLRYGDSTNCPERAEEDGRLTKLERLDLLLKSP 132
+++ +++ +L R P +L Q+ DST + D +K DL+ K P
Sbjct: 113 IDVIVSLISGRLVRERIGPAMLSAVQSQMGAVDSTFEELSSIFDTGGSKGLTGDLVDKIP 172
Query: 133 LRKL-------GPEDEDVCPTCLEEYTL-ENPKIVTQCRHHYHLSCIYEWMERSPTCPVC 184
K+ ++D C CL+++ L E + + C H +HL CI W+ R +CP+C
Sbjct: 173 KIKITGKNNLDASGNKDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLFRHGSCPMC 232
Query: 185 SK 186
+
Sbjct: 233 RR 234
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 119 LTKLERLDLLLKSPLRKLGPEDE-DVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMER 177
LTK E++D L +R G D C C+ EYT N C H YH+ CI W+
Sbjct: 524 LTK-EQIDNLA---MRSFGENDALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSE 579
Query: 178 SPTCPVCSKVMV 189
+ TCP+C + ++
Sbjct: 580 NSTCPICRRAVL 591
>sp|Q7TMV1|RN139_MOUSE E3 ubiquitin-protein ligase RNF139 OS=Mus musculus GN=Rnf139 PE=1
SV=1
Length = 668
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVC-SKVMVFDE 192
E +DVC C E+T +T C H++H C+ +W+ TCP+C KV + DE
Sbjct: 542 EIDDVCAICYHEFT--TSARITPCNHYFHALCLRKWLYIQDTCPMCHQKVYIEDE 594
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 126 DLLLKSPLRKLGPEDE-DVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERS-PTCPV 183
D L K P+ K DE DVC CL+EY + + C H YH C+ W+ ++ TCPV
Sbjct: 221 DQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPV 280
Query: 184 CSKVMV 189
C + +V
Sbjct: 281 CKQKVV 286
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 126 DLLLKSPLRKLGPEDE-DVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERS-PTCPV 183
D L K P+ K DE DVC CL+EY + + C H YH C+ W+ ++ TCPV
Sbjct: 221 DQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPV 280
Query: 184 CSKVMV 189
C + +V
Sbjct: 281 CKQKVV 286
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 126 DLLLKSPLRKLGPEDE-DVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERS-PTCPV 183
D L K P+ K DE DVC CL+EY + + C H YH C+ W+ ++ TCPV
Sbjct: 221 DQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPV 280
Query: 184 CSKVMV 189
C + +V
Sbjct: 281 CKQKVV 286
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 126 DLLLKSPLRKLGPEDE-DVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERS-PTCPV 183
D L K P+ K DE DVC CL+EY + + C H YH C+ W+ ++ TCPV
Sbjct: 221 DQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPV 280
Query: 184 CSKVMV 189
C + +V
Sbjct: 281 CKQKVV 286
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 119 LTKLERLDLLLKSPLRKLGPEDE-DVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMER 177
LTK E++D L R G D C C+ EYT N C H YH+ CI W+
Sbjct: 546 LTK-EQIDNL---STRNFGENDALKTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSE 601
Query: 178 SPTCPVCSKVMVF 190
+ TCP+C + ++
Sbjct: 602 NSTCPICRRAVLV 614
>sp|Q7KRW1|TRC8_DROME Protein TRC8 homolog OS=Drosophila melanogaster GN=Trc8 PE=1 SV=1
Length = 809
Score = 47.0 bits (110), Expect = 8e-05, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 141 EDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVFDE 192
+DVC C +E + + KI T+CRH +H C+ +W+ CP+C ++M++ +
Sbjct: 618 DDVCAICYQE--MYSAKI-TRCRHFFHGVCLRKWLYVQDRCPLCHEIMMYTD 666
>sp|O43085|DSC1_SCHPO DSC E3 ubiquitin ligase complex subunit 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=dsc1 PE=1 SV=2
Length = 695
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 14/59 (23%)
Query: 140 DEDVCPTCLEEYTLE------NPK--------IVTQCRHHYHLSCIYEWMERSPTCPVC 184
D +VCP C++ L NP ++T C H YH C+ +WME CPVC
Sbjct: 630 DANVCPICMQPIELVSTGSTLNPASMMVRRNYMLTPCHHLYHRQCLLQWMETRSICPVC 688
>sp|Q5RBT7|RN139_PONAB E3 ubiquitin-protein ligase RNF139 OS=Pongo abelii GN=RNF139 PE=2
SV=1
Length = 664
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVC-SKVMVFDE 192
E DVC C E+T +T C H++H C+ +W+ TCP+C KV + D+
Sbjct: 542 EINDVCAICYHEFT--TSARITPCNHYFHALCLRKWLYIQDTCPMCHQKVYIEDD 594
>sp|Q8WU17|RN139_HUMAN E3 ubiquitin-protein ligase RNF139 OS=Homo sapiens GN=RNF139 PE=1
SV=1
Length = 664
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVC-SKVMVFDE 192
E DVC C E+T +T C H++H C+ +W+ TCP+C KV + D+
Sbjct: 542 EINDVCAICYHEFT--TSARITPCNHYFHALCLRKWLYIQDTCPMCHQKVYIEDD 594
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 119 LTKLERLDLLLKSPLRKLGPEDE-DVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMER 177
LTK E++D L R G D C C+ EYT N C H YH+ CI W+
Sbjct: 563 LTK-EQIDNLS---TRNFGENDALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSE 618
Query: 178 SPTCPVCSKVMVF 190
+ TCP+C + ++
Sbjct: 619 NSTCPICRRAVLV 631
>sp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana
GN=ATL12 PE=3 SV=1
Length = 390
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 122 LERLDLLLKSPLRKLGPEDEDVCPTCLEEYT-LENPKIVTQCRHHYHLSCIYEWMERSPT 180
+E L S L+ L E C CL ++ +E +++ +CRH +H+ CI +W+E+ T
Sbjct: 104 IESLPFFRFSALKGLKQGLE--CSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHAT 161
Query: 181 CPVC 184
CP+C
Sbjct: 162 CPLC 165
>sp|Q8GT74|NIP2_ARATH NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1
SV=1
Length = 241
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 71/180 (39%), Gaps = 29/180 (16%)
Query: 36 TLLNKYTALFKKDETLAG-----PSDAHQGAALSTSNSSSS--------SPSSC-----N 77
TLL T ET +G A GA S SS S C +
Sbjct: 60 TLLGALTGALIGQETESGFIRGAAIGAISGAVFSIEVFESSLDLWKSDESGFGCFLYLID 119
Query: 78 ILPEIVTSQLRTMRFDPQLL---HKQLRYGDSTNCPERAEEDGRLTKLERLDLLLKSPLR 134
++ +++ +L R P +L Q+ D+ + D +K DL+ K P
Sbjct: 120 VIVSLLSGRLVRERIGPAMLSAVQSQMGAVDTAFDDHTSLFDTGGSKGLTGDLVEKIPKM 179
Query: 135 KL-------GPEDEDVCPTCLEEYTL-ENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSK 186
+ E+ D C CL+++ L E + + C H +HL CI W+ R +CP+C +
Sbjct: 180 TITGNNNTDASENTDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLLRHGSCPMCRR 239
>sp|Q08109|HRD1_YEAST ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRD1 PE=1
SV=1
Length = 551
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 13/64 (20%)
Query: 140 DEDVCPTCLEEYTLENPKIVTQ-----------CRHHYHLSCIYEWMERSPTCPVCSKVM 188
D+++C C++E + +P T C H HLSC+ WMERS TCP+C ++
Sbjct: 345 DDNICIICMDEL-IHSPNQQTWKNKNKKPKRLPCGHILHLSCLKNWMERSQTCPIC-RLP 402
Query: 189 VFDE 192
VFDE
Sbjct: 403 VFDE 406
>sp|P0CH03|AT21C_ARATH Putative RING-H2 finger protein ATL21C OS=Arabidopsis thaliana
GN=ATL21C PE=3 SV=1
Length = 366
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 70 SSSPSSCNILPEIVTSQLR-TMRFDPQLLHKQLRYGDSTNCPERAEEDGRLTKLERLDLL 128
S S + + P + +L + RFD + + R + + ++++L
Sbjct: 248 SLSAVTVFVFPTCIAIRLYDSERFDSAIAAATVMQQPREVMARRGLDQSTIETFKKMEL- 306
Query: 129 LKSPLRKLGPEDEDVCPTCLEEY-TLENPKIVTQCRHHYHLSCIYEWMERSPTCPVC 184
R+L + VCP CL EY + E + + +C H +H+ CI W++ +CP+C
Sbjct: 307 --GESRRLSGTNGIVCPICLSEYASKETVRFIPECDHCFHVECIDVWLKIHGSCPLC 361
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1
Length = 312
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 144 CPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVM 188
CP C E+YT+ C H +H CI W+E+ TCPVC K +
Sbjct: 228 CPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272
>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1
Length = 313
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 144 CPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVFDETT 194
CP C E+Y L C H +H SCI W+E+ +CPVC K + T
Sbjct: 231 CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA 281
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 144 CPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVM 188
CP C E+YT+ C H +H CI W+E+ TCPVC K +
Sbjct: 227 CPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 271
>sp|Q9C7E9|ATL20_ARATH RING-H2 finger protein ATL20 OS=Arabidopsis thaliana GN=ATL20 PE=2
SV=2
Length = 299
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 134 RKLGPEDEDVCPTCLEEY-TLENPKIVTQCRHHYHLSCIYEWMERSPTCPVC 184
R+L + +CP CL EY + E + + +C H +H+ CI EW++ +CPVC
Sbjct: 243 RRLPGTNGIICPICLSEYASKETVRCMPECDHCFHVQCIDEWLKIHSSCPVC 294
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 119 LTKLERLDLLLKSPLRKLGPEDE-DVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMER 177
LTK E++D L R G D C C+ EYT N C H YH+ CI W+
Sbjct: 681 LTK-EQIDNLS---TRNYGENDALKTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSE 736
Query: 178 SPTCPVCSKVMVF 190
+ TCP+C + ++
Sbjct: 737 NSTCPICRRAVLV 749
>sp|Q9ULK6|RN150_HUMAN RING finger protein 150 OS=Homo sapiens GN=RNF150 PE=2 SV=2
Length = 438
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%)
Query: 99 KQLRYGDSTNCPERAEEDGRLTKLERLDLLLKSPLRKLGPEDEDVCPTCLEEYTLENPKI 158
++ RY ++ + +R D + +L + K D D C C+E Y +
Sbjct: 233 QRFRYANARDRNQRRLGDAAKKAISKLQIRTIKKGDKETESDFDNCAVCIEGYKPNDVVR 292
Query: 159 VTQCRHHYHLSCIYEWMERSPTCPVC 184
+ CRH +H SC+ W+ TCP+C
Sbjct: 293 ILPCRHLFHKSCVDPWLLDHRTCPMC 318
>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1
Length = 667
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 119 LTKLERLDLLLKSPLRKLGPEDE--DVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWME 176
LTK E++D L + G + E VC C+ +Y N C H +H+ CI W+
Sbjct: 588 LTK-EQIDNLSTRSYEQDGVDSELGKVCSVCISDYVAGNKLRQLPCLHEFHIHCIDRWLS 646
Query: 177 RSPTCPVCSK-VMVFDETT 194
+ TCPVC + V+ F T+
Sbjct: 647 ENCTCPVCRRPVLEFGATS 665
>sp|Q803I8|SYVN1_DANRE E3 ubiquitin-protein ligase synoviolin OS=Danio rerio GN=syvn1 PE=2
SV=2
Length = 625
Score = 43.9 bits (102), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 138 PED----EDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVC 184
PED ++VC C EE K+ C H +H SC+ W +R TCP C
Sbjct: 281 PEDLQATDNVCIICREEMVTGAKKL--PCNHIFHSSCLRSWFQRQQTCPTC 329
>sp|A8Y4B2|HRD1_CAEBR E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae
GN=sel-11 PE=3 SV=2
Length = 622
Score = 43.9 bits (102), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 144 CPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVC 184
C C EE T+E+ C H +H C+ W +R TCP C
Sbjct: 292 CIICREEMTVESSPKRLPCSHVFHAHCLRSWFQRQQTCPTC 332
>sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1
Length = 312
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 144 CPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVM 188
CP C E+YT+ C H +H CI W+E+ TCPVC K +
Sbjct: 228 CPVCKEDYTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272
>sp|Q9FGJ6|ATL79_ARATH RING-H2 finger protein ATL79 OS=Arabidopsis thaliana GN=ATL79 PE=2
SV=1
Length = 166
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 127 LLLKSPLRKLGPEDEDVCPTCLEEYTL-ENPKIVTQCRHHYHLSCIYEWMERSPTCPVCS 185
L+ S L G E E C CL E+ E+ +++ +C+H +H+ CI++W+ +CP C
Sbjct: 92 LVYSSDLELAGAEAE--CAICLSEFEQGESIQVLEKCQHGFHVKCIHKWLSTRSSCPTC- 148
Query: 186 KVMVFDE 192
+ +F +
Sbjct: 149 RTSIFSQ 155
>sp|Q5DTZ6|RN150_MOUSE RING finger protein 150 OS=Mus musculus GN=Rnf150 PE=2 SV=2
Length = 437
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%)
Query: 99 KQLRYGDSTNCPERAEEDGRLTKLERLDLLLKSPLRKLGPEDEDVCPTCLEEYTLENPKI 158
++ RY ++ + +R D + +L + K D D C C+E Y +
Sbjct: 232 QRFRYANARDRNQRRLGDAAKKAISKLQVRTIRKGDKETESDFDNCAVCIEGYKPNDVVR 291
Query: 159 VTQCRHHYHLSCIYEWMERSPTCPVC 184
+ CRH +H SC+ W+ TCP+C
Sbjct: 292 ILPCRHLFHKSCVDPWLLDHRTCPMC 317
>sp|Q5RF74|RN128_PONAB E3 ubiquitin-protein ligase RNF128 OS=Pongo abelii GN=RNF128 PE=2
SV=1
Length = 428
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 99 KQLRYGDSTNCPERAEEDGRLTKLERLDL-LLKSPLRKLGPEDEDVCPTCLEEYTLENPK 157
++LR + + +R + + RL L LK R++GP D D C C+E Y +
Sbjct: 232 RRLRNARAQSRKQRQLKADAKKAIGRLQLRTLKQGDREIGP-DGDSCAVCIELYKPNDLV 290
Query: 158 IVTQCRHHYHLSCIYEWMERSPTCPVC 184
+ C H +H +C+ W+ TCP+C
Sbjct: 291 RILTCNHIFHKTCVDPWLLEHRTCPMC 317
>sp|Q6NKR1|ATL28_ARATH RING-H2 finger protein ATL28 OS=Arabidopsis thaliana GN=ATL28 PE=2
SV=1
Length = 254
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 144 CPTCLEEYTLENP-KIVTQCRHHYHLSCIYEWMERSPTCPVC 184
C CL E++ E+ +++T CRH +H +CI W E TCPVC
Sbjct: 103 CAICLSEFSDEDTVRLITVCRHPFHSNCIDLWFELHKTCPVC 144
>sp|Q0IJ20|RN145_XENTR RING finger protein 145 OS=Xenopus tropicalis GN=rnf145 PE=2 SV=1
Length = 695
Score = 43.5 bits (101), Expect = 9e-04, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 119 LTKLERLDLLLKSPLRKLGPEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERS 178
+ K++ L + K L + D+C C ++ N ++T C H +H C+ +W+
Sbjct: 516 VNKIKSLPVATKEQLE----QHNDICSICYQDM---NSAVITPCSHFFHPGCLKKWLYVQ 568
Query: 179 PTCPVC 184
TCP+C
Sbjct: 569 ETCPLC 574
>sp|Q9FKX5|NIPL1_ARATH NEP1-interacting protein-like 1 OS=Arabidopsis thaliana GN=ATL27
PE=2 SV=1
Length = 221
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 75/178 (42%), Gaps = 30/178 (16%)
Query: 36 TLLNKYTALFKKDETLAG-----PSDAHQGAALSTSNSSSS--------SPSSC-----N 77
TLL T ET +G A GA S SS S C +
Sbjct: 45 TLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLLLWQSDESGIGCLLYLID 104
Query: 78 ILPEIVTSQLRTMRFDPQLL---HKQL-----RYGDSTNCPERAEEDGRLTKLERLDLLL 129
++ +++ +L R P +L Q+ ++ D T+ + A G LT + L+ +
Sbjct: 105 VIASLLSGRLVRERIGPAMLSAVQSQMGAVESQFQDHTDIFDTAISKG-LTG-DSLNRIP 162
Query: 130 KSPLRKLGPEDEDVCPTCLEEYTL-ENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSK 186
K + PE C CL+++ + E + + C H +HL CI +W+ R +CP+C +
Sbjct: 163 KVRITDTSPEIVS-CSVCLQDFQVGETVRSLPHCHHMFHLPCIDKWLRRHASCPLCRR 219
>sp|Q9LM69|ATL80_ARATH RING-H2 finger protein ATL80 OS=Arabidopsis thaliana GN=ATL80 PE=1
SV=1
Length = 197
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 138 PEDEDV--CPTCLEEYTLENP-KIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVF 190
PE E C CL E++ + +++ QC H +H++CI W+ +CP C +++V
Sbjct: 103 PESEKFAECAICLAEFSAGDELRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVV 158
>sp|Q5BIY5|RN145_XENLA RING finger protein 145 OS=Xenopus laevis GN=rnf145 PE=2 SV=1
Length = 695
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVC 184
+ D+C C ++ N ++T C H +H C+ +W+ TCP+C
Sbjct: 532 QHNDICSICYQDM---NSAVITPCSHFFHPGCLKKWLYVQETCPLC 574
>sp|Q96MT1|RN145_HUMAN RING finger protein 145 OS=Homo sapiens GN=RNF145 PE=2 SV=2
Length = 663
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 119 LTKLERLDLLLKSPLRKLGPEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERS 178
+ K++ L + K L K D+C C ++ ++T C H +H C+ +W+
Sbjct: 516 VNKIKSLPIATKEQLEK----HNDICAICYQDM---KSAVITPCSHFFHAGCLKKWLYVQ 568
Query: 179 PTCPVC 184
TCP+C
Sbjct: 569 ETCPLC 574
>sp|Q9SKK8|ATL22_ARATH RING-H2 finger protein ATL22 OS=Arabidopsis thaliana GN=ATL22 PE=2
SV=2
Length = 377
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 140 DEDVCPTCLEEY-TLENPKIVTQCRHHYHLSCIYEWMERSPTCPVC 184
++ VCP CL EY T E + + +C H +H CI W++ +CPVC
Sbjct: 323 NDVVCPICLSEYATKETVRCLPECEHCFHTECIDAWLKLHSSCPVC 368
>sp|P0CH01|AT21A_ARATH Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana
GN=ATL21A PE=3 SV=1
Length = 372
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 137 GPEDEDVCPTCLEEY-TLENPKIVTQCRHHYHLSCIYEWMERSPTCPVC 184
G D+ VCP CL EY + E + + +C H +H CI W++ +CP+C
Sbjct: 313 GNNDDIVCPICLSEYASKETVRCIPECDHCFHSECIDVWLKIHGSCPLC 361
>sp|Q9FHG8|ATL50_ARATH Putative RING-H2 finger protein ATL50 OS=Arabidopsis thaliana
GN=ATL50 PE=3 SV=1
Length = 210
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 144 CPTCLEEYTLENP-KIVTQCRHHYHLSCIYEWMERSPTCPVC 184
C CL E+T E+ +++ +C H +H+ CI W+ + TCP+C
Sbjct: 122 CAVCLREFTAEDELRLLPKCSHAFHVECIDTWLLTNSTCPLC 163
>sp|Q63364|PJA2_RAT E3 ubiquitin-protein ligase Praja-2 OS=Rattus norvegicus GN=Pja2
PE=2 SV=1
Length = 707
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 141 EDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSK 186
E CP C EY ++ C H +H C+ W+++S TCPVC +
Sbjct: 630 EQCCPICCSEYIKDDIATELPCHHFFHKPCVSIWLQKSGTCPVCRR 675
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,109,797
Number of Sequences: 539616
Number of extensions: 3044891
Number of successful extensions: 10259
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 182
Number of HSP's that attempted gapping in prelim test: 9800
Number of HSP's gapped (non-prelim): 617
length of query: 194
length of database: 191,569,459
effective HSP length: 111
effective length of query: 83
effective length of database: 131,672,083
effective search space: 10928782889
effective search space used: 10928782889
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)