Query 029389
Match_columns 194
No_of_seqs 256 out of 1340
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 12:08:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029389.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029389hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13639 zf-RING_2: Ring finge 99.6 1.4E-16 3E-21 99.8 2.9 44 142-185 1-44 (44)
2 KOG4628 Predicted E3 ubiquitin 99.5 8.6E-15 1.9E-19 127.5 4.0 49 142-190 230-279 (348)
3 PF12678 zf-rbx1: RING-H2 zinc 99.4 1.1E-13 2.4E-18 95.9 4.2 46 140-185 18-73 (73)
4 COG5243 HRD1 HRD ubiquitin lig 99.4 2.8E-13 6E-18 117.9 3.9 57 137-193 283-349 (491)
5 PHA02929 N1R/p28-like protein; 99.3 2.6E-12 5.5E-17 107.4 4.6 51 139-189 172-227 (238)
6 COG5540 RING-finger-containing 99.3 1.7E-12 3.6E-17 110.4 3.4 52 139-190 321-373 (374)
7 PF12861 zf-Apc11: Anaphase-pr 99.2 6.6E-12 1.4E-16 88.8 3.6 54 139-192 19-85 (85)
8 PF13923 zf-C3HC4_2: Zinc fing 99.1 2.7E-11 5.9E-16 73.8 3.0 39 144-184 1-39 (39)
9 PF13920 zf-C3HC4_3: Zinc fing 99.1 3.5E-11 7.7E-16 77.1 3.7 47 140-189 1-48 (50)
10 cd00162 RING RING-finger (Real 99.1 4.3E-11 9.2E-16 73.4 3.7 44 143-188 1-45 (45)
11 PLN03208 E3 ubiquitin-protein 99.1 1.2E-10 2.7E-15 94.1 4.1 50 139-191 16-81 (193)
12 KOG0823 Predicted E3 ubiquitin 99.1 9.2E-11 2E-15 96.6 3.3 52 138-192 44-98 (230)
13 KOG0317 Predicted E3 ubiquitin 99.1 1.1E-10 2.4E-15 98.8 3.6 54 136-192 234-287 (293)
14 KOG0320 Predicted E3 ubiquitin 99.0 2.3E-10 5.1E-15 90.8 5.1 53 138-191 128-180 (187)
15 COG5194 APC11 Component of SCF 99.0 3.4E-10 7.3E-15 78.6 2.5 52 141-192 20-84 (88)
16 PF15227 zf-C3HC4_4: zinc fing 99.0 5.8E-10 1.3E-14 69.2 3.3 38 144-184 1-42 (42)
17 PF14634 zf-RING_5: zinc-RING 99.0 4.8E-10 1E-14 70.1 3.0 44 143-186 1-44 (44)
18 PF00097 zf-C3HC4: Zinc finger 98.9 5.9E-10 1.3E-14 68.2 3.0 39 144-184 1-41 (41)
19 KOG0802 E3 ubiquitin ligase [P 98.9 4.9E-10 1.1E-14 104.0 2.3 51 138-188 288-340 (543)
20 PHA02926 zinc finger-like prot 98.9 1.5E-09 3.2E-14 89.2 3.2 52 139-190 168-231 (242)
21 smart00184 RING Ring finger. E 98.8 2.5E-09 5.5E-14 63.1 3.3 38 144-184 1-39 (39)
22 smart00504 Ubox Modified RING 98.8 4E-09 8.6E-14 70.1 4.3 48 142-192 2-49 (63)
23 KOG1493 Anaphase-promoting com 98.7 2.6E-09 5.6E-14 73.6 -0.2 54 139-192 18-84 (84)
24 TIGR00599 rad18 DNA repair pro 98.6 1.7E-08 3.6E-13 90.2 3.5 51 137-190 22-72 (397)
25 PF13445 zf-RING_UBOX: RING-ty 98.5 6.9E-08 1.5E-12 60.2 3.2 38 144-182 1-43 (43)
26 KOG2930 SCF ubiquitin ligase, 98.5 4.8E-08 1E-12 71.1 1.7 57 136-192 41-111 (114)
27 COG5574 PEX10 RING-finger-cont 98.5 7E-08 1.5E-12 81.1 2.4 51 139-192 213-265 (271)
28 KOG0828 Predicted E3 ubiquitin 98.5 5.9E-08 1.3E-12 87.6 1.8 52 139-190 569-635 (636)
29 smart00744 RINGv The RING-vari 98.4 1.9E-07 4E-12 59.8 3.2 42 143-185 1-49 (49)
30 PF11793 FANCL_C: FANCL C-term 98.3 7.1E-08 1.5E-12 66.3 -0.7 52 141-192 2-69 (70)
31 KOG2164 Predicted E3 ubiquitin 98.3 4.2E-07 9.2E-12 82.4 2.9 48 141-191 186-238 (513)
32 PF04564 U-box: U-box domain; 98.2 9.5E-07 2.1E-11 61.0 3.0 50 140-192 3-53 (73)
33 KOG0804 Cytoplasmic Zn-finger 98.2 7.8E-07 1.7E-11 79.6 2.5 52 136-189 170-222 (493)
34 KOG1734 Predicted RING-contain 98.2 3.5E-07 7.5E-12 77.2 0.3 53 138-190 221-282 (328)
35 KOG2177 Predicted E3 ubiquitin 98.2 6.1E-07 1.3E-11 74.3 1.6 47 137-186 9-55 (386)
36 KOG0287 Postreplication repair 98.0 2.6E-06 5.7E-11 74.0 1.6 48 139-189 21-68 (442)
37 COG5219 Uncharacterized conser 97.9 4.1E-06 8.8E-11 80.8 1.0 55 136-190 1464-1524(1525)
38 COG5432 RAD18 RING-finger-cont 97.8 1E-05 2.2E-10 69.2 2.3 47 139-188 23-69 (391)
39 KOG1039 Predicted E3 ubiquitin 97.8 1.1E-05 2.4E-10 71.0 1.9 52 139-190 159-222 (344)
40 KOG0825 PHD Zn-finger protein 97.7 2.1E-05 4.5E-10 74.7 2.8 50 139-188 121-170 (1134)
41 KOG0311 Predicted E3 ubiquitin 97.7 4.8E-06 1E-10 72.7 -1.6 53 136-190 38-91 (381)
42 PF14835 zf-RING_6: zf-RING of 97.7 8.2E-06 1.8E-10 54.8 -0.3 49 140-192 6-54 (65)
43 KOG4445 Uncharacterized conser 97.6 1.8E-05 3.9E-10 67.9 0.8 55 139-193 113-190 (368)
44 PF11789 zf-Nse: Zinc-finger o 97.5 6.3E-05 1.4E-09 49.6 1.9 43 139-183 9-53 (57)
45 KOG4265 Predicted E3 ubiquitin 97.5 9.9E-05 2.2E-09 64.6 3.4 48 139-189 288-336 (349)
46 KOG1941 Acetylcholine receptor 97.3 7.5E-05 1.6E-09 66.2 0.8 47 140-186 364-413 (518)
47 KOG0297 TNF receptor-associate 97.3 0.00012 2.7E-09 65.7 1.7 52 138-191 18-69 (391)
48 KOG0978 E3 ubiquitin ligase in 97.2 9.3E-05 2E-09 70.2 0.9 50 140-192 642-692 (698)
49 KOG1428 Inhibitor of type V ad 97.2 0.00028 6.1E-09 71.0 3.0 53 137-189 3482-3544(3738)
50 KOG4159 Predicted E3 ubiquitin 97.1 0.00028 6.1E-09 63.4 2.1 48 139-189 82-129 (398)
51 PF12906 RINGv: RING-variant d 96.9 0.00047 1E-08 43.6 1.7 40 144-184 1-47 (47)
52 COG5152 Uncharacterized conser 96.7 0.00058 1.3E-08 55.7 0.7 45 141-188 196-240 (259)
53 PF05883 Baculo_RING: Baculovi 96.6 0.00094 2E-08 51.2 1.2 36 140-175 25-66 (134)
54 KOG2660 Locus-specific chromos 96.5 0.00073 1.6E-08 58.7 0.1 49 138-188 12-60 (331)
55 KOG2879 Predicted E3 ubiquitin 96.4 0.0032 7E-08 53.6 3.7 52 136-189 234-287 (298)
56 KOG1785 Tyrosine kinase negati 96.4 0.0014 2.9E-08 58.6 1.3 48 142-192 370-419 (563)
57 PF14570 zf-RING_4: RING/Ubox 96.4 0.0026 5.7E-08 40.4 2.2 44 144-187 1-46 (48)
58 KOG1952 Transcription factor N 96.3 0.0035 7.6E-08 60.4 3.4 50 136-185 186-243 (950)
59 PHA02825 LAP/PHD finger-like p 96.2 0.0036 7.8E-08 49.3 2.8 50 137-190 4-60 (162)
60 KOG4172 Predicted E3 ubiquitin 96.2 0.0015 3.2E-08 42.6 0.4 46 141-189 7-54 (62)
61 PF10367 Vps39_2: Vacuolar sor 96.0 0.0029 6.4E-08 45.7 1.3 36 136-172 73-108 (109)
62 KOG3039 Uncharacterized conser 96.0 0.0069 1.5E-07 51.0 3.6 53 140-192 220-273 (303)
63 PHA02862 5L protein; Provision 95.9 0.0048 1E-07 47.9 2.0 48 141-190 2-54 (156)
64 KOG1813 Predicted E3 ubiquitin 95.8 0.0032 6.9E-08 54.1 0.8 45 141-188 241-285 (313)
65 KOG1002 Nucleotide excision re 95.8 0.0039 8.4E-08 57.6 1.4 55 136-193 531-590 (791)
66 KOG3970 Predicted E3 ubiquitin 95.7 0.0096 2.1E-07 49.6 3.1 52 138-190 47-106 (299)
67 PHA03096 p28-like protein; Pro 95.6 0.0058 1.2E-07 52.7 1.7 47 142-188 179-236 (284)
68 KOG0801 Predicted E3 ubiquitin 95.5 0.0045 9.7E-08 49.0 0.6 33 136-168 172-204 (205)
69 PF08746 zf-RING-like: RING-li 95.2 0.0094 2E-07 36.9 1.1 41 144-184 1-43 (43)
70 KOG1814 Predicted E3 ubiquitin 95.0 0.015 3.3E-07 52.1 2.3 38 139-176 182-219 (445)
71 PF04641 Rtf2: Rtf2 RING-finge 95.0 0.034 7.4E-07 47.2 4.3 54 138-192 110-164 (260)
72 PF14447 Prok-RING_4: Prokaryo 94.8 0.017 3.7E-07 37.6 1.5 47 141-192 7-53 (55)
73 KOG1940 Zn-finger protein [Gen 94.3 0.023 5E-07 48.7 1.7 46 141-186 158-204 (276)
74 PF03854 zf-P11: P-11 zinc fin 94.2 0.021 4.5E-07 36.1 0.8 44 143-191 4-48 (50)
75 KOG0827 Predicted E3 ubiquitin 94.1 0.0033 7.1E-08 55.9 -4.0 50 141-190 196-246 (465)
76 KOG1571 Predicted E3 ubiquitin 94.0 0.041 8.9E-07 48.5 2.6 44 139-188 303-346 (355)
77 KOG3268 Predicted E3 ubiquitin 94.0 0.041 8.8E-07 44.4 2.4 56 137-192 161-231 (234)
78 COG5222 Uncharacterized conser 93.9 0.032 6.8E-07 48.4 1.7 48 142-191 275-324 (427)
79 KOG4692 Predicted E3 ubiquitin 93.8 0.04 8.7E-07 48.7 2.2 48 139-189 420-467 (489)
80 COG5236 Uncharacterized conser 93.8 0.066 1.4E-06 47.3 3.5 50 136-188 56-107 (493)
81 KOG4275 Predicted E3 ubiquitin 93.4 0.018 3.8E-07 49.7 -0.6 42 141-189 300-342 (350)
82 KOG0826 Predicted E3 ubiquitin 93.2 0.094 2E-06 45.9 3.6 50 139-190 298-347 (357)
83 COG5175 MOT2 Transcriptional r 92.6 0.092 2E-06 46.3 2.6 53 137-189 10-64 (480)
84 KOG0298 DEAD box-containing he 90.8 0.072 1.6E-06 53.8 0.1 45 140-186 1152-1196(1394)
85 KOG2114 Vacuolar assembly/sort 90.7 0.13 2.8E-06 50.1 1.6 42 141-187 840-881 (933)
86 KOG3002 Zn finger protein [Gen 90.5 0.17 3.7E-06 44.0 2.1 47 136-189 43-91 (299)
87 KOG2034 Vacuolar sorting prote 90.3 0.16 3.4E-06 49.6 1.8 39 136-175 812-850 (911)
88 KOG2817 Predicted E3 ubiquitin 90.1 0.3 6.6E-06 43.7 3.3 50 138-187 331-383 (394)
89 KOG1001 Helicase-like transcri 89.4 0.16 3.4E-06 48.9 1.1 44 142-189 455-500 (674)
90 KOG2932 E3 ubiquitin ligase in 88.8 0.16 3.4E-06 44.3 0.6 42 143-188 92-133 (389)
91 KOG1609 Protein involved in mR 88.5 0.28 6.1E-06 41.9 2.0 49 141-189 78-134 (323)
92 KOG3053 Uncharacterized conser 87.9 0.24 5.1E-06 42.1 1.1 51 137-188 16-81 (293)
93 COG5183 SSM4 Protein involved 87.8 0.32 6.9E-06 47.4 2.0 54 138-192 9-69 (1175)
94 PF07800 DUF1644: Protein of u 86.5 0.84 1.8E-05 36.1 3.4 37 140-176 1-47 (162)
95 PF14446 Prok-RING_1: Prokaryo 85.5 1 2.2E-05 29.3 2.8 45 140-188 4-51 (54)
96 KOG0309 Conserved WD40 repeat- 85.4 0.54 1.2E-05 45.5 2.1 28 156-183 1042-1069(1081)
97 PF10272 Tmpp129: Putative tra 85.0 0.53 1.1E-05 42.0 1.8 53 137-191 267-353 (358)
98 PF02891 zf-MIZ: MIZ/SP-RING z 84.1 1.4 3E-05 28.0 3.0 43 142-187 3-50 (50)
99 KOG0802 E3 ubiquitin ligase [P 82.7 0.64 1.4E-05 43.5 1.4 51 136-193 474-524 (543)
100 KOG1812 Predicted E3 ubiquitin 82.4 0.47 1E-05 42.7 0.4 38 140-177 145-183 (384)
101 KOG1100 Predicted E3 ubiquitin 80.0 1.1 2.5E-05 36.8 1.9 38 144-188 161-199 (207)
102 KOG3161 Predicted E3 ubiquitin 78.1 0.86 1.9E-05 43.5 0.6 40 141-182 11-51 (861)
103 KOG1815 Predicted E3 ubiquitin 74.5 1.8 4E-05 39.5 1.8 37 139-177 68-104 (444)
104 KOG3899 Uncharacterized conser 74.1 1.5 3.2E-05 38.1 1.0 30 161-190 324-366 (381)
105 KOG2066 Vacuolar assembly/sort 73.4 1.4 3.1E-05 42.8 0.7 46 138-184 781-830 (846)
106 KOG1829 Uncharacterized conser 71.6 1.4 3.1E-05 41.6 0.3 44 139-185 509-557 (580)
107 smart00249 PHD PHD zinc finger 71.4 2.2 4.7E-05 25.2 1.0 31 143-173 1-31 (47)
108 KOG4362 Transcriptional regula 71.3 1 2.2E-05 43.3 -0.7 46 140-188 20-68 (684)
109 KOG0825 PHD Zn-finger protein 69.5 3.3 7.2E-05 40.6 2.2 51 139-189 94-154 (1134)
110 KOG4718 Non-SMC (structural ma 69.2 2.5 5.3E-05 35.1 1.2 48 139-188 179-226 (235)
111 PF13901 DUF4206: Domain of un 69.1 3.7 7.9E-05 33.6 2.2 41 140-185 151-196 (202)
112 PF05290 Baculo_IE-1: Baculovi 67.5 3.7 8.1E-05 31.6 1.8 51 140-190 79-133 (140)
113 COG5109 Uncharacterized conser 62.9 7.1 0.00015 34.4 2.8 49 137-185 332-383 (396)
114 KOG0269 WD40 repeat-containing 58.1 8.1 0.00018 37.7 2.6 41 142-183 780-820 (839)
115 PF00628 PHD: PHD-finger; Int 56.4 4.4 9.6E-05 25.0 0.4 44 143-186 1-50 (51)
116 COG5220 TFB3 Cdk activating ki 55.0 6.1 0.00013 33.5 1.1 47 140-186 9-61 (314)
117 PF07191 zinc-ribbons_6: zinc- 54.9 0.98 2.1E-05 30.9 -3.0 40 142-189 2-41 (70)
118 KOG3005 GIY-YIG type nuclease 54.1 7.6 0.00016 33.3 1.5 48 141-188 182-242 (276)
119 PF07975 C1_4: TFIIH C1-like d 52.5 6.5 0.00014 25.2 0.7 42 144-185 2-50 (51)
120 KOG3113 Uncharacterized conser 50.9 16 0.00036 31.2 3.0 52 139-192 109-161 (293)
121 KOG3579 Predicted E3 ubiquitin 48.7 9.2 0.0002 33.2 1.2 48 139-189 266-328 (352)
122 PF04710 Pellino: Pellino; In 48.3 5.9 0.00013 35.8 0.0 47 139-188 275-338 (416)
123 PF14169 YdjO: Cold-inducible 47.2 9.8 0.00021 25.2 0.9 19 173-191 28-52 (59)
124 KOG2979 Protein involved in DN 46.7 9.3 0.0002 32.6 0.9 44 140-185 175-220 (262)
125 KOG1812 Predicted E3 ubiquitin 46.4 12 0.00026 33.7 1.6 44 141-184 306-351 (384)
126 PF07649 C1_3: C1-like domain; 46.2 13 0.00028 20.7 1.2 29 143-171 2-30 (30)
127 PF06844 DUF1244: Protein of u 45.9 14 0.0003 25.0 1.5 12 165-176 11-22 (68)
128 PF10571 UPF0547: Uncharacteri 44.1 12 0.00026 20.5 0.8 15 174-188 10-24 (26)
129 smart00132 LIM Zinc-binding do 43.4 25 0.00055 19.6 2.3 38 143-189 1-38 (39)
130 PF13717 zinc_ribbon_4: zinc-r 41.2 18 0.00038 21.2 1.3 26 142-167 3-36 (36)
131 PF14569 zf-UDP: Zinc-binding 39.4 32 0.0007 24.0 2.5 49 139-187 7-60 (80)
132 KOG2071 mRNA cleavage and poly 37.7 28 0.00061 33.0 2.7 37 139-175 511-557 (579)
133 KOG2068 MOT2 transcription fac 37.5 29 0.00064 30.6 2.6 50 141-190 249-299 (327)
134 PF01363 FYVE: FYVE zinc finge 37.3 15 0.00031 24.2 0.6 37 139-175 7-44 (69)
135 PF04423 Rad50_zn_hook: Rad50 37.3 11 0.00024 23.9 -0.0 10 180-189 22-31 (54)
136 KOG1729 FYVE finger containing 37.1 6 0.00013 34.3 -1.7 36 142-177 215-250 (288)
137 TIGR00622 ssl1 transcription f 36.8 40 0.00086 25.2 2.9 45 142-186 56-111 (112)
138 PF13719 zinc_ribbon_5: zinc-r 36.6 23 0.00051 20.7 1.3 26 142-167 3-36 (37)
139 cd00350 rubredoxin_like Rubred 36.1 28 0.00061 19.8 1.6 10 177-186 16-25 (33)
140 KOG2807 RNA polymerase II tran 34.9 37 0.00081 30.1 2.8 47 140-186 329-375 (378)
141 KOG1074 Transcriptional repres 32.7 30 0.00064 34.4 2.0 17 136-152 600-616 (958)
142 PRK11827 hypothetical protein; 32.5 16 0.00034 24.2 0.1 19 173-191 3-21 (60)
143 KOG3842 Adaptor protein Pellin 32.5 50 0.0011 29.3 3.2 52 139-190 339-415 (429)
144 PF06906 DUF1272: Protein of u 32.3 86 0.0019 20.5 3.5 46 142-190 6-53 (57)
145 KOG3039 Uncharacterized conser 32.1 35 0.00076 29.2 2.1 37 137-176 39-75 (303)
146 PF00412 LIM: LIM domain; Int 31.8 38 0.00082 21.0 1.9 37 144-189 1-37 (58)
147 smart00064 FYVE Protein presen 31.2 23 0.0005 23.2 0.8 36 141-176 10-46 (68)
148 KOG3799 Rab3 effector RIM1 and 30.7 12 0.00027 28.9 -0.7 52 136-187 60-116 (169)
149 PF14353 CpXC: CpXC protein 30.7 57 0.0012 24.2 3.0 46 142-190 2-50 (128)
150 PF13832 zf-HC5HC2H_2: PHD-zin 30.2 27 0.00058 25.1 1.0 33 140-174 54-88 (110)
151 PF03119 DNA_ligase_ZBD: NAD-d 29.0 18 0.0004 20.0 -0.0 11 180-190 1-11 (28)
152 cd00065 FYVE FYVE domain; Zinc 28.6 42 0.00091 20.9 1.7 35 142-176 3-38 (57)
153 smart00734 ZnF_Rad18 Rad18-lik 28.5 27 0.00059 18.9 0.6 9 180-188 3-11 (26)
154 PF02318 FYVE_2: FYVE-type zin 28.5 34 0.00074 25.3 1.4 46 140-186 53-102 (118)
155 PLN02189 cellulose synthase 26.7 55 0.0012 33.4 2.8 49 140-188 33-86 (1040)
156 PRK01343 zinc-binding protein; 26.1 45 0.00098 21.9 1.4 11 179-189 10-20 (57)
157 PF14311 DUF4379: Domain of un 25.3 46 0.00099 21.0 1.4 23 161-184 33-55 (55)
158 COG5627 MMS21 DNA repair prote 24.3 34 0.00073 29.0 0.7 47 141-189 189-239 (275)
159 PF13771 zf-HC5HC2H: PHD-like 23.8 48 0.001 22.7 1.4 33 141-173 36-68 (90)
160 smart00647 IBR In Between Ring 23.3 23 0.00049 22.5 -0.4 19 156-174 39-58 (64)
161 PF10497 zf-4CXXC_R1: Zinc-fin 23.0 1.1E+02 0.0024 22.4 3.2 24 163-186 37-69 (105)
162 KOG0801 Predicted E3 ubiquitin 22.9 37 0.00081 27.2 0.7 16 178-193 138-153 (205)
163 PRK00418 DNA gyrase inhibitor; 22.7 53 0.0011 21.9 1.3 13 178-190 6-18 (62)
164 COG4068 Uncharacterized protei 21.9 53 0.0011 21.8 1.1 16 178-193 8-23 (64)
165 PF02444 HEV_ORF1: Hepatitis E 21.6 87 0.0019 22.9 2.3 19 26-44 16-34 (114)
166 PLN02436 cellulose synthase A 20.5 83 0.0018 32.2 2.7 49 140-188 35-88 (1094)
167 PLN02638 cellulose synthase A 20.5 92 0.002 31.9 3.0 49 140-188 16-69 (1079)
168 COG3492 Uncharacterized protei 20.2 54 0.0012 23.7 1.0 12 165-176 42-53 (104)
No 1
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.63 E-value=1.4e-16 Score=99.79 Aligned_cols=44 Identities=45% Similarity=1.086 Sum_probs=40.3
Q ss_pred cccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCccc
Q 029389 142 DVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCS 185 (194)
Q Consensus 142 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR 185 (194)
++|+||+++|..++.++.++|+|.||.+||.+|++++.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 47999999999888999999999999999999999999999997
No 2
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=8.6e-15 Score=127.54 Aligned_cols=49 Identities=33% Similarity=0.918 Sum_probs=44.4
Q ss_pred cccccccccccCCCCeEEecCCCeecHHHHHHHHHcC-CCCCcccccccC
Q 029389 142 DVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERS-PTCPVCSKVMVF 190 (194)
Q Consensus 142 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~-~tCPvCR~~v~~ 190 (194)
++|+||||+|..|+++++|||+|.||..||+.||.+. ..||+||+++..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 4999999999999999999999999999999999666 559999987654
No 3
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.43 E-value=1.1e-13 Score=95.94 Aligned_cols=46 Identities=35% Similarity=0.925 Sum_probs=37.1
Q ss_pred CCcccccccccccC----------CCCeEEecCCCeecHHHHHHHHHcCCCCCccc
Q 029389 140 DEDVCPTCLEEYTL----------ENPKIVTQCRHHYHLSCIYEWMERSPTCPVCS 185 (194)
Q Consensus 140 ~~~~C~ICle~~~~----------~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR 185 (194)
.++.|+||++.|.. +..+.+.+|+|.||..||.+||+++.+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 34569999999942 23455668999999999999999999999998
No 4
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.8e-13 Score=117.88 Aligned_cols=57 Identities=30% Similarity=0.859 Sum_probs=48.8
Q ss_pred CCCCCccccccccc-ccCC---------CCeEEecCCCeecHHHHHHHHHcCCCCCcccccccCCCC
Q 029389 137 GPEDEDVCPTCLEE-YTLE---------NPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVFDET 193 (194)
Q Consensus 137 ~~~~~~~C~ICle~-~~~~---------~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~~~~ 193 (194)
...++..|.||+|+ |..+ ...+.|||||+||.+|++.|++|+++||+||.++++|++
T Consensus 283 l~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ifd~~ 349 (491)
T COG5243 283 LTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIFDQS 349 (491)
T ss_pred hcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccccccC
Confidence 35677899999999 4433 245679999999999999999999999999999999875
No 5
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.29 E-value=2.6e-12 Score=107.43 Aligned_cols=51 Identities=27% Similarity=0.766 Sum_probs=42.2
Q ss_pred CCCcccccccccccCCCC-----eEEecCCCeecHHHHHHHHHcCCCCCccccccc
Q 029389 139 EDEDVCPTCLEEYTLENP-----KIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~-----~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
..+.+|+||++.+..... .++++|+|.||..||.+|++++.+||+||..+.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 346799999999875331 345689999999999999999999999998764
No 6
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.7e-12 Score=110.44 Aligned_cols=52 Identities=25% Similarity=0.737 Sum_probs=47.2
Q ss_pred CCCcccccccccccCCCCeEEecCCCeecHHHHHHHHH-cCCCCCcccccccC
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWME-RSPTCPVCSKVMVF 190 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~-~~~tCPvCR~~v~~ 190 (194)
....+|+|||+.|..++..++|||.|.||..||.+||. -+..||+||.+++.
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 44589999999999888899999999999999999997 67889999999874
No 7
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.23 E-value=6.6e-12 Score=88.78 Aligned_cols=54 Identities=30% Similarity=0.874 Sum_probs=43.9
Q ss_pred CCCcccccccccccC----------CCCeEEecCCCeecHHHHHHHHHc---CCCCCcccccccCCC
Q 029389 139 EDEDVCPTCLEEYTL----------ENPKIVTQCRHHYHLSCIYEWMER---SPTCPVCSKVMVFDE 192 (194)
Q Consensus 139 ~~~~~C~ICle~~~~----------~~~~~~l~C~H~FH~~CI~~Wl~~---~~tCPvCR~~v~~~~ 192 (194)
.+++.|.||...|.. +-+++.-.|+|.||..||.+||+. +..||+||+++.++|
T Consensus 19 ~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k~ 85 (85)
T PF12861_consen 19 ANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFKE 85 (85)
T ss_pred CCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeeeCC
Confidence 347899999999973 224555689999999999999964 468999999998875
No 8
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.15 E-value=2.7e-11 Score=73.81 Aligned_cols=39 Identities=46% Similarity=1.238 Sum_probs=33.7
Q ss_pred cccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcc
Q 029389 144 CPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVC 184 (194)
Q Consensus 144 C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvC 184 (194)
|+||++.+. ++.+.++|||.|+..||.+|++.+..||+|
T Consensus 1 C~iC~~~~~--~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR--DPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-S--SEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCccc--CcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 899999987 466789999999999999999988999998
No 9
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.15 E-value=3.5e-11 Score=77.13 Aligned_cols=47 Identities=23% Similarity=0.752 Sum_probs=39.9
Q ss_pred CCcccccccccccCCCCeEEecCCCe-ecHHHHHHHHHcCCCCCccccccc
Q 029389 140 DEDVCPTCLEEYTLENPKIVTQCRHH-YHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 140 ~~~~C~ICle~~~~~~~~~~l~C~H~-FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
++..|.||++... ..+.++|+|. |+..|+..|++++..||+||+++.
T Consensus 1 ~~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPR---DVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBS---SEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CcCCCccCCccCC---ceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 3568999999875 5788899999 999999999999999999999874
No 10
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.14 E-value=4.3e-11 Score=73.36 Aligned_cols=44 Identities=39% Similarity=1.054 Sum_probs=37.7
Q ss_pred ccccccccccCCCCeEEecCCCeecHHHHHHHHHc-CCCCCcccccc
Q 029389 143 VCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMER-SPTCPVCSKVM 188 (194)
Q Consensus 143 ~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~-~~tCPvCR~~v 188 (194)
+|+||++.+. +....++|+|.||..||..|++. +..||+||+.+
T Consensus 1 ~C~iC~~~~~--~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 5999999983 56666679999999999999987 77899999864
No 11
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.06 E-value=1.2e-10 Score=94.11 Aligned_cols=50 Identities=30% Similarity=0.720 Sum_probs=40.7
Q ss_pred CCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHc----------------CCCCCcccccccCC
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMER----------------SPTCPVCSKVMVFD 191 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~----------------~~tCPvCR~~v~~~ 191 (194)
.++.+|+||++.+. ..++++|+|.||..||.+|+.. ...||+||..+...
T Consensus 16 ~~~~~CpICld~~~---dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 16 GGDFDCNICLDQVR---DPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred CCccCCccCCCcCC---CcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 45689999999986 4466899999999999999852 24799999988543
No 12
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=9.2e-11 Score=96.60 Aligned_cols=52 Identities=31% Similarity=0.747 Sum_probs=42.8
Q ss_pred CCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHc---CCCCCcccccccCCC
Q 029389 138 PEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMER---SPTCPVCSKVMVFDE 192 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~---~~tCPvCR~~v~~~~ 192 (194)
.....+|.||||.-+ ..+++.|||.||+.||++||+. ++.|||||..|..++
T Consensus 44 ~~~~FdCNICLd~ak---dPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~ 98 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAK---DPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDT 98 (230)
T ss_pred CCCceeeeeeccccC---CCEEeecccceehHHHHHHHhhcCCCeeCCccccccccce
Confidence 456789999999865 5567889999999999999964 456999999886654
No 13
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.1e-10 Score=98.81 Aligned_cols=54 Identities=31% Similarity=0.705 Sum_probs=46.1
Q ss_pred CCCCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccccccCCC
Q 029389 136 LGPEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVFDE 192 (194)
Q Consensus 136 ~~~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~~~ 192 (194)
...+....|.||||... ....+||||+||..||.+|...+..||+||..+...+
T Consensus 234 ~i~~a~~kC~LCLe~~~---~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 234 SIPEATRKCSLCLENRS---NPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred cCCCCCCceEEEecCCC---CCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 44566789999999875 5677999999999999999999999999999876543
No 14
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.3e-10 Score=90.81 Aligned_cols=53 Identities=28% Similarity=0.720 Sum_probs=44.0
Q ss_pred CCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccccccCC
Q 029389 138 PEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVFD 191 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~~ 191 (194)
.+....|+|||+.|....+ ..++|||+||..||+..++....||+|++.+-.+
T Consensus 128 ~~~~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred cccccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 3456899999999984322 4589999999999999999999999999876543
No 15
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.96 E-value=3.4e-10 Score=78.61 Aligned_cols=52 Identities=29% Similarity=0.757 Sum_probs=41.6
Q ss_pred CcccccccccccC-----------CC--CeEEecCCCeecHHHHHHHHHcCCCCCcccccccCCC
Q 029389 141 EDVCPTCLEEYTL-----------EN--PKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVFDE 192 (194)
Q Consensus 141 ~~~C~ICle~~~~-----------~~--~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~~~ 192 (194)
-+.|+||...|.. ++ ++..-.|+|.||..||++||..+..||++|+.+++.+
T Consensus 20 id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~~ 84 (88)
T COG5194 20 IDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLAD 84 (88)
T ss_pred cchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEec
Confidence 4678888776642 22 4455579999999999999999999999999988765
No 16
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.96 E-value=5.8e-10 Score=69.18 Aligned_cols=38 Identities=29% Similarity=0.852 Sum_probs=29.3
Q ss_pred cccccccccCCCCeEEecCCCeecHHHHHHHHHcC----CCCCcc
Q 029389 144 CPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERS----PTCPVC 184 (194)
Q Consensus 144 C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~----~tCPvC 184 (194)
|+||++.|. ..+.|+|||.|+..||..|++.. ..||+|
T Consensus 1 CpiC~~~~~---~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK---DPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S---SEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC---CccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999997 66779999999999999999543 369987
No 17
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.96 E-value=4.8e-10 Score=70.07 Aligned_cols=44 Identities=32% Similarity=0.781 Sum_probs=39.3
Q ss_pred ccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccc
Q 029389 143 VCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSK 186 (194)
Q Consensus 143 ~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~ 186 (194)
.|+||++.|..+....+++|||+|+..||..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999966677888999999999999999967778999985
No 18
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.95 E-value=5.9e-10 Score=68.24 Aligned_cols=39 Identities=41% Similarity=1.187 Sum_probs=33.7
Q ss_pred cccccccccCCCCeEEecCCCeecHHHHHHHHH--cCCCCCcc
Q 029389 144 CPTCLEEYTLENPKIVTQCRHHYHLSCIYEWME--RSPTCPVC 184 (194)
Q Consensus 144 C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~--~~~tCPvC 184 (194)
|+||++.+. +...+++|+|.|+..||.+|++ ....||+|
T Consensus 1 C~iC~~~~~--~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFE--DPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCS--SEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCcccc--CCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999987 3445899999999999999998 55679998
No 19
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=4.9e-10 Score=103.99 Aligned_cols=51 Identities=35% Similarity=0.828 Sum_probs=43.9
Q ss_pred CCCCcccccccccccCCCC--eEEecCCCeecHHHHHHHHHcCCCCCcccccc
Q 029389 138 PEDEDVCPTCLEEYTLENP--KIVTQCRHHYHLSCIYEWMERSPTCPVCSKVM 188 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~--~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v 188 (194)
...+..|+||+|++..+.. ..+++|+|+||..|+..|+++.++||.||..+
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 3457899999999985433 67799999999999999999999999999844
No 20
>PHA02926 zinc finger-like protein; Provisional
Probab=98.86 E-value=1.5e-09 Score=89.20 Aligned_cols=52 Identities=23% Similarity=0.626 Sum_probs=39.2
Q ss_pred CCCcccccccccccCC-----C-CeEEecCCCeecHHHHHHHHHcC------CCCCcccccccC
Q 029389 139 EDEDVCPTCLEEYTLE-----N-PKIVTQCRHHYHLSCIYEWMERS------PTCPVCSKVMVF 190 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~-----~-~~~~l~C~H~FH~~CI~~Wl~~~------~tCPvCR~~v~~ 190 (194)
..+.+|+||||..... . -.+..+|+|.||..||..|.+.+ .+||+||..+.+
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 4468999999987432 1 12445899999999999999653 459999987653
No 21
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.85 E-value=2.5e-09 Score=63.12 Aligned_cols=38 Identities=45% Similarity=1.174 Sum_probs=33.1
Q ss_pred cccccccccCCCCeEEecCCCeecHHHHHHHHH-cCCCCCcc
Q 029389 144 CPTCLEEYTLENPKIVTQCRHHYHLSCIYEWME-RSPTCPVC 184 (194)
Q Consensus 144 C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~-~~~tCPvC 184 (194)
|+||++.. .....++|+|.||..||..|++ .+..||+|
T Consensus 1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 78999983 4677789999999999999997 66779987
No 22
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.84 E-value=4e-09 Score=70.10 Aligned_cols=48 Identities=23% Similarity=0.522 Sum_probs=41.4
Q ss_pred cccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccccccCCC
Q 029389 142 DVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVFDE 192 (194)
Q Consensus 142 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~~~ 192 (194)
..|+||++.+. ++ .+++|||.|+..||.+|++.+.+||+|++.+..++
T Consensus 2 ~~Cpi~~~~~~--~P-v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~ 49 (63)
T smart00504 2 FLCPISLEVMK--DP-VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHED 49 (63)
T ss_pred cCCcCCCCcCC--CC-EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhh
Confidence 57999999987 34 66899999999999999988899999999875543
No 23
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=2.6e-09 Score=73.63 Aligned_cols=54 Identities=26% Similarity=0.771 Sum_probs=41.3
Q ss_pred CCCcccccccccccC---------C-CCeEEecCCCeecHHHHHHHHHc---CCCCCcccccccCCC
Q 029389 139 EDEDVCPTCLEEYTL---------E-NPKIVTQCRHHYHLSCIYEWMER---SPTCPVCSKVMVFDE 192 (194)
Q Consensus 139 ~~~~~C~ICle~~~~---------~-~~~~~l~C~H~FH~~CI~~Wl~~---~~tCPvCR~~v~~~~ 192 (194)
..+.+|.||.-.|.. + -++++-.|.|.||..||.+|+.. ...||+||+.+.+.|
T Consensus 18 ~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~~e 84 (84)
T KOG1493|consen 18 APDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQFKE 84 (84)
T ss_pred CCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEecC
Confidence 344599999999873 1 23444479999999999999954 346999999988764
No 24
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.65 E-value=1.7e-08 Score=90.16 Aligned_cols=51 Identities=22% Similarity=0.548 Sum_probs=43.2
Q ss_pred CCCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccccccC
Q 029389 137 GPEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVF 190 (194)
Q Consensus 137 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~ 190 (194)
..+....|+||++.|. ..++++|+|.||..||..|+.....||+||..+..
T Consensus 22 ~Le~~l~C~IC~d~~~---~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 22 PLDTSLRCHICKDFFD---VPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccccCCCcCchhhh---CccCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 3456789999999996 33568999999999999999888899999987653
No 25
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.55 E-value=6.9e-08 Score=60.16 Aligned_cols=38 Identities=37% Similarity=0.912 Sum_probs=23.3
Q ss_pred ccccccccc-CCCCeEEecCCCeecHHHHHHHHHcC----CCCC
Q 029389 144 CPTCLEEYT-LENPKIVTQCRHHYHLSCIYEWMERS----PTCP 182 (194)
Q Consensus 144 C~ICle~~~-~~~~~~~l~C~H~FH~~CI~~Wl~~~----~tCP 182 (194)
|+||+| |. .++..++|+|||.|+.+||.+|++.+ ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 75 46678889999999999999999743 3576
No 26
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=4.8e-08 Score=71.10 Aligned_cols=57 Identities=26% Similarity=0.534 Sum_probs=44.7
Q ss_pred CCCCCCcccccccccccC--------------CCCeEEecCCCeecHHHHHHHHHcCCCCCcccccccCCC
Q 029389 136 LGPEDEDVCPTCLEEYTL--------------ENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVFDE 192 (194)
Q Consensus 136 ~~~~~~~~C~ICle~~~~--------------~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~~~ 192 (194)
.....-+.|+||..-+.+ +-.+..-.|+|.||..||.+||+.+..||+|.++.++..
T Consensus 41 aWDi~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~~qr 111 (114)
T KOG2930|consen 41 AWDIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWVFQR 111 (114)
T ss_pred eeeeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcceeEee
Confidence 445567899999865531 123445579999999999999999999999999988754
No 27
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=7e-08 Score=81.08 Aligned_cols=51 Identities=29% Similarity=0.642 Sum_probs=42.7
Q ss_pred CCCcccccccccccCCCCeEEecCCCeecHHHHHH-HHHcCCC-CCcccccccCCC
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYE-WMERSPT-CPVCSKVMVFDE 192 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~-Wl~~~~t-CPvCR~~v~~~~ 192 (194)
+.+..|+||++... ....++|||+||..||.. |-.++.. ||+||+.+..++
T Consensus 213 ~~d~kC~lC~e~~~---~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 213 LADYKCFLCLEEPE---VPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccccceeeeecccC---CcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 56789999999875 667799999999999999 8866665 999998776543
No 28
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=5.9e-08 Score=87.56 Aligned_cols=52 Identities=27% Similarity=0.725 Sum_probs=41.5
Q ss_pred CCCcccccccccccC---CC-----------CeEEecCCCeecHHHHHHHHH-cCCCCCcccccccC
Q 029389 139 EDEDVCPTCLEEYTL---EN-----------PKIVTQCRHHYHLSCIYEWME-RSPTCPVCSKVMVF 190 (194)
Q Consensus 139 ~~~~~C~ICle~~~~---~~-----------~~~~l~C~H~FH~~CI~~Wl~-~~~tCPvCR~~v~~ 190 (194)
+....|+|||..+.- +. ....+||.|+||..|+.+||. .+-.||+||..++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 456789999988752 11 234579999999999999998 66799999998863
No 29
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.44 E-value=1.9e-07 Score=59.79 Aligned_cols=42 Identities=31% Similarity=0.887 Sum_probs=32.5
Q ss_pred ccccccccccCCCCeEEecCC-----CeecHHHHHHHHHc--CCCCCccc
Q 029389 143 VCPTCLEEYTLENPKIVTQCR-----HHYHLSCIYEWMER--SPTCPVCS 185 (194)
Q Consensus 143 ~C~ICle~~~~~~~~~~l~C~-----H~FH~~CI~~Wl~~--~~tCPvCR 185 (194)
.|.||++... ++...+.||. |.+|..||.+|+.. +.+||+|+
T Consensus 1 ~CrIC~~~~~-~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGD-EGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCC-CCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899999333 4455678885 89999999999954 45899995
No 30
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.33 E-value=7.1e-08 Score=66.25 Aligned_cols=52 Identities=29% Similarity=0.634 Sum_probs=25.1
Q ss_pred Cccccccccccc-CCCC-eEEe---cCCCeecHHHHHHHHHc---C--------CCCCcccccccCCC
Q 029389 141 EDVCPTCLEEYT-LENP-KIVT---QCRHHYHLSCIYEWMER---S--------PTCPVCSKVMVFDE 192 (194)
Q Consensus 141 ~~~C~ICle~~~-~~~~-~~~l---~C~H~FH~~CI~~Wl~~---~--------~tCPvCR~~v~~~~ 192 (194)
+..|.||.+.+. .+.. ..+- .|+..||..||.+||+. . .+||.|+++|....
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~~ 69 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWSF 69 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGGG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEec
Confidence 468999999876 3222 2222 68999999999999953 1 25999999887653
No 31
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=4.2e-07 Score=82.44 Aligned_cols=48 Identities=29% Similarity=0.752 Sum_probs=38.5
Q ss_pred CcccccccccccCCCCeEEecCCCeecHHHHHHHHHcC-----CCCCcccccccCC
Q 029389 141 EDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERS-----PTCPVCSKVMVFD 191 (194)
Q Consensus 141 ~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~-----~tCPvCR~~v~~~ 191 (194)
+..|||||+... ....+.|||+||..||.+.|+.. ..||+||..+-..
T Consensus 186 ~~~CPICL~~~~---~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k 238 (513)
T KOG2164|consen 186 DMQCPICLEPPS---VPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK 238 (513)
T ss_pred CCcCCcccCCCC---cccccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence 789999999875 34456699999999999988654 4799999876543
No 32
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.23 E-value=9.5e-07 Score=60.96 Aligned_cols=50 Identities=26% Similarity=0.442 Sum_probs=38.4
Q ss_pred CCcccccccccccCCCCeEEecCCCeecHHHHHHHHHc-CCCCCcccccccCCC
Q 029389 140 DEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMER-SPTCPVCSKVMVFDE 192 (194)
Q Consensus 140 ~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~-~~tCPvCR~~v~~~~ 192 (194)
++..|+|+.+.+. ..+++++||.|.+.+|..|++. ..+||++++.+..++
T Consensus 3 ~~f~CpIt~~lM~---dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~ 53 (73)
T PF04564_consen 3 DEFLCPITGELMR---DPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESD 53 (73)
T ss_dssp GGGB-TTTSSB-S---SEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGG
T ss_pred cccCCcCcCcHhh---CceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCccc
Confidence 4578999999997 5567899999999999999987 889999998876543
No 33
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.19 E-value=7.8e-07 Score=79.61 Aligned_cols=52 Identities=33% Similarity=0.822 Sum_probs=41.7
Q ss_pred CCCCCCcccccccccccCCC-CeEEecCCCeecHHHHHHHHHcCCCCCccccccc
Q 029389 136 LGPEDEDVCPTCLEEYTLEN-PKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 136 ~~~~~~~~C~ICle~~~~~~-~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
....+..+|+||||-++... .++.+.|.|.||..|+..|...+ |||||....
T Consensus 170 ~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~s--cpvcR~~q~ 222 (493)
T KOG0804|consen 170 TGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDSS--CPVCRYCQS 222 (493)
T ss_pred CCcccCCCcchhHhhcCccccceeeeecccccchHHHhhcccCc--ChhhhhhcC
Confidence 45567889999999998643 34556799999999999997654 999997554
No 34
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=3.5e-07 Score=77.19 Aligned_cols=53 Identities=25% Similarity=0.641 Sum_probs=43.3
Q ss_pred CCCCcccccccccccCCC-------CeEEecCCCeecHHHHHHHH--HcCCCCCcccccccC
Q 029389 138 PEDEDVCPTCLEEYTLEN-------PKIVTQCRHHYHLSCIYEWM--ERSPTCPVCSKVMVF 190 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~-------~~~~l~C~H~FH~~CI~~Wl--~~~~tCPvCR~~v~~ 190 (194)
..++..|+||-..+.... ..-.|.|+|.||..||..|- -.+++||.|++.+..
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 356779999998887533 45578999999999999998 567899999987754
No 35
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=6.1e-07 Score=74.26 Aligned_cols=47 Identities=32% Similarity=0.785 Sum_probs=40.4
Q ss_pred CCCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccc
Q 029389 137 GPEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSK 186 (194)
Q Consensus 137 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~ 186 (194)
...++..|+||++.|.. + .+++|+|.|+..||..|+.....||.||.
T Consensus 9 ~~~~~~~C~iC~~~~~~--p-~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFRE--P-VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred hccccccChhhHHHhhc--C-ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 34577899999999984 3 88999999999999999986668999994
No 36
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.98 E-value=2.6e-06 Score=74.04 Aligned_cols=48 Identities=27% Similarity=0.744 Sum_probs=42.4
Q ss_pred CCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCccccccc
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
+.-..|.||.|-|. ...++||+|.||.-||...|..+..||.|+.++-
T Consensus 21 D~lLRC~IC~eyf~---ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~ 68 (442)
T KOG0287|consen 21 DDLLRCGICFEYFN---IPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVT 68 (442)
T ss_pred HHHHHHhHHHHHhc---CceeccccchHHHHHHHHHhccCCCCCceecccc
Confidence 44578999999996 6778899999999999999999999999987653
No 37
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.88 E-value=4.1e-06 Score=80.78 Aligned_cols=55 Identities=22% Similarity=0.773 Sum_probs=41.0
Q ss_pred CCCCCCcccccccccccC-CC---CeEEecCCCeecHHHHHHHHHc--CCCCCcccccccC
Q 029389 136 LGPEDEDVCPTCLEEYTL-EN---PKIVTQCRHHYHLSCIYEWMER--SPTCPVCSKVMVF 190 (194)
Q Consensus 136 ~~~~~~~~C~ICle~~~~-~~---~~~~l~C~H~FH~~CI~~Wl~~--~~tCPvCR~~v~~ 190 (194)
.....-.+|+||...+.. +. .++...|.|.||..||++|++. +.+||+||.++.+
T Consensus 1464 ~~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1464 EKFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred hhcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 344556789999987762 11 1233459999999999999965 4689999998875
No 38
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.81 E-value=1e-05 Score=69.17 Aligned_cols=47 Identities=26% Similarity=0.521 Sum_probs=41.4
Q ss_pred CCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccccc
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVM 188 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v 188 (194)
+.-..|-||-+-|. ....++|||.||.-||...|..+.-||+||.+.
T Consensus 23 Ds~lrC~IC~~~i~---ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~ 69 (391)
T COG5432 23 DSMLRCRICDCRIS---IPCETTCGHTFCSLCIRRHLGTQPFCPVCREDP 69 (391)
T ss_pred hhHHHhhhhhheee---cceecccccchhHHHHHHHhcCCCCCccccccH
Confidence 34568999999986 667789999999999999999999999999864
No 39
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=1.1e-05 Score=71.00 Aligned_cols=52 Identities=31% Similarity=0.765 Sum_probs=39.7
Q ss_pred CCCcccccccccccCCC-----CeEEecCCCeecHHHHHHHH--Hc-----CCCCCcccccccC
Q 029389 139 EDEDVCPTCLEEYTLEN-----PKIVTQCRHHYHLSCIYEWM--ER-----SPTCPVCSKVMVF 190 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~-----~~~~l~C~H~FH~~CI~~Wl--~~-----~~tCPvCR~~v~~ 190 (194)
..+.+|.||||...... -.+..+|.|.|+..||..|- .+ ++.||.||....+
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 45789999999987433 22335699999999999999 44 4689999976443
No 40
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.71 E-value=2.1e-05 Score=74.75 Aligned_cols=50 Identities=24% Similarity=0.521 Sum_probs=43.8
Q ss_pred CCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccccc
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVM 188 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v 188 (194)
.....|+|||..+..+......+|+|.||..||..|-+...+||+||.++
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF 170 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEF 170 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhh
Confidence 45678999999998766666678999999999999999999999999864
No 41
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=4.8e-06 Score=72.69 Aligned_cols=53 Identities=25% Similarity=0.637 Sum_probs=42.0
Q ss_pred CCCCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHH-cCCCCCcccccccC
Q 029389 136 LGPEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWME-RSPTCPVCSKVMVF 190 (194)
Q Consensus 136 ~~~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~-~~~tCPvCR~~v~~ 190 (194)
.....+..|+|||+.++ ....+..|.|.||.+||..-|+ .+++||.||+.+.-
T Consensus 38 ~~~~~~v~c~icl~llk--~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 38 AMFDIQVICPICLSLLK--KTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVS 91 (381)
T ss_pred HHhhhhhccHHHHHHHH--hhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccc
Confidence 34456789999999997 3444456999999999999995 56789999997653
No 42
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.67 E-value=8.2e-06 Score=54.77 Aligned_cols=49 Identities=24% Similarity=0.644 Sum_probs=24.8
Q ss_pred CCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccccccCCC
Q 029389 140 DEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVFDE 192 (194)
Q Consensus 140 ~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~~~ 192 (194)
+...|++|.+-+. +++.+..|.|+|+..||..-+. ..||+|+.+.-.+|
T Consensus 6 ~lLrCs~C~~~l~--~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD 54 (65)
T PF14835_consen 6 ELLRCSICFDILK--EPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQD 54 (65)
T ss_dssp HTTS-SSS-S--S--S-B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS
T ss_pred HhcCCcHHHHHhc--CCceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHH
Confidence 3467999999986 5666778999999999988554 34999998764443
No 43
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.60 E-value=1.8e-05 Score=67.87 Aligned_cols=55 Identities=25% Similarity=0.673 Sum_probs=45.6
Q ss_pred CCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHc-----------------------CCCCCcccccccCCCC
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMER-----------------------SPTCPVCSKVMVFDET 193 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~-----------------------~~tCPvCR~~v~~~~~ 193 (194)
.....|.|||--|..+....+++|-|.||..|+.++|.. ...||+||..+..++.
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~ 190 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEEN 190 (368)
T ss_pred CCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccccc
Confidence 345689999999998888999999999999999887731 2369999998877653
No 44
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.48 E-value=6.3e-05 Score=49.59 Aligned_cols=43 Identities=28% Similarity=0.685 Sum_probs=30.1
Q ss_pred CCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHc--CCCCCc
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMER--SPTCPV 183 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~--~~tCPv 183 (194)
.....|||.+..|. ++++...|+|.|-.+.|.+||++ ...||+
T Consensus 9 ~~~~~CPiT~~~~~--~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFE--DPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-S--SEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhh--CCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 34578999999997 78888899999999999999943 456998
No 45
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=9.9e-05 Score=64.64 Aligned_cols=48 Identities=27% Similarity=0.630 Sum_probs=40.0
Q ss_pred CCCcccccccccccCCCCeEEecCCC-eecHHHHHHHHHcCCCCCccccccc
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQCRH-HYHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~C~H-~FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
+...+|.|||.+-. ...+|||.| --|..|.+.-.-+.+.||+||+.+.
T Consensus 288 ~~gkeCVIClse~r---dt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 288 ESGKECVICLSESR---DTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred cCCCeeEEEecCCc---ceEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 34678999999865 678899999 5789999987767788999999763
No 46
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.29 E-value=7.5e-05 Score=66.21 Aligned_cols=47 Identities=34% Similarity=0.709 Sum_probs=38.9
Q ss_pred CCcccccccccccCC-CCeEEecCCCeecHHHHHHHHHcC--CCCCcccc
Q 029389 140 DEDVCPTCLEEYTLE-NPKIVTQCRHHYHLSCIYEWMERS--PTCPVCSK 186 (194)
Q Consensus 140 ~~~~C~ICle~~~~~-~~~~~l~C~H~FH~~CI~~Wl~~~--~tCPvCR~ 186 (194)
-+.-|..|-|.+... +....|||.|+||..|+++.|+++ .+||.||+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 456899999998763 355678999999999999999665 47999994
No 47
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.26 E-value=0.00012 Score=65.65 Aligned_cols=52 Identities=25% Similarity=0.721 Sum_probs=44.0
Q ss_pred CCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccccccCC
Q 029389 138 PEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVFD 191 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~~ 191 (194)
.+++..|+||...+. ++...+.|+|.|+..||..|+..+..||.|+..+...
T Consensus 18 ~~~~l~C~~C~~vl~--~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 18 LDENLLCPICMSVLR--DPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQA 69 (391)
T ss_pred CcccccCcccccccc--CCCCCCCCCCcccccccchhhccCcCCcccccccchh
Confidence 466789999999987 4555478999999999999999999999998876544
No 48
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=9.3e-05 Score=70.18 Aligned_cols=50 Identities=20% Similarity=0.596 Sum_probs=41.4
Q ss_pred CCcccccccccccCCCCeEEecCCCeecHHHHHHHH-HcCCCCCcccccccCCC
Q 029389 140 DEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWM-ERSPTCPVCSKVMVFDE 192 (194)
Q Consensus 140 ~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl-~~~~tCPvCR~~v~~~~ 192 (194)
+-..|++|-.-++ ..+++.|+|.||..||..-+ .|...||.|...+-..|
T Consensus 642 ~~LkCs~Cn~R~K---d~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 642 ELLKCSVCNTRWK---DAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND 692 (698)
T ss_pred hceeCCCccCchh---hHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 4568999997775 56678899999999999999 56778999998876554
No 49
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.15 E-value=0.00028 Score=71.01 Aligned_cols=53 Identities=28% Similarity=0.720 Sum_probs=43.9
Q ss_pred CCCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcC----------CCCCccccccc
Q 029389 137 GPEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERS----------PTCPVCSKVMV 189 (194)
Q Consensus 137 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~----------~tCPvCR~~v~ 189 (194)
..+.++.|.||+.+--...+.+.|.|+|+||+.|...-|+++ -.||+|+.++.
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 345678999999887767788999999999999999888654 26999998764
No 50
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.00028 Score=63.37 Aligned_cols=48 Identities=29% Similarity=0.745 Sum_probs=42.4
Q ss_pred CCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCccccccc
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
..+..|.||+..+- +.++++|||.|+..||.+-|.++..||.||.+++
T Consensus 82 ~sef~c~vc~~~l~---~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~ 129 (398)
T KOG4159|consen 82 RSEFECCVCSRALY---PPVVTPCGHSFCLECLDRSLDQETECPLCRDELV 129 (398)
T ss_pred cchhhhhhhHhhcC---CCccccccccccHHHHHHHhccCCCCcccccccc
Confidence 56789999998876 5677799999999999999998899999998875
No 51
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.94 E-value=0.00047 Score=43.60 Aligned_cols=40 Identities=30% Similarity=0.884 Sum_probs=27.3
Q ss_pred cccccccccCCCCeEEecCC-----CeecHHHHHHHHH--cCCCCCcc
Q 029389 144 CPTCLEEYTLENPKIVTQCR-----HHYHLSCIYEWME--RSPTCPVC 184 (194)
Q Consensus 144 C~ICle~~~~~~~~~~l~C~-----H~FH~~CI~~Wl~--~~~tCPvC 184 (194)
|-||++.-..++ ..+.||. -..|..||.+|+. .+.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 679999977555 4557764 3789999999995 45679887
No 52
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.66 E-value=0.00058 Score=55.67 Aligned_cols=45 Identities=27% Similarity=0.682 Sum_probs=40.0
Q ss_pred CcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccccc
Q 029389 141 EDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVM 188 (194)
Q Consensus 141 ~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v 188 (194)
...|.||-++|. ..+++.|||.||..|...-++....|-+|.+..
T Consensus 196 PF~C~iCKkdy~---spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 196 PFLCGICKKDYE---SPVVTECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred ceeehhchhhcc---chhhhhcchhHHHHHHHHHhccCCcceecchhh
Confidence 468999999997 567789999999999999999999999998764
No 53
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.57 E-value=0.00094 Score=51.24 Aligned_cols=36 Identities=11% Similarity=0.316 Sum_probs=29.7
Q ss_pred CCcccccccccccCCCCeEEecCC------CeecHHHHHHHH
Q 029389 140 DEDVCPTCLEEYTLENPKIVTQCR------HHYHLSCIYEWM 175 (194)
Q Consensus 140 ~~~~C~ICle~~~~~~~~~~l~C~------H~FH~~CI~~Wl 175 (194)
-..+|.||++.+...+.++.+.|+ |.||.+|+.+|-
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 367899999999974566666674 999999999994
No 54
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.47 E-value=0.00073 Score=58.72 Aligned_cols=49 Identities=29% Similarity=0.654 Sum_probs=41.2
Q ss_pred CCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccccc
Q 029389 138 PEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVM 188 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v 188 (194)
.....+|.+|---|- +...+..|-|.||..||...|+.+..||.|...+
T Consensus 12 ~n~~itC~LC~GYli--DATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~i 60 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLI--DATTITECLHTFCKSCIVKYLEESKYCPTCDIVI 60 (331)
T ss_pred cccceehhhccceee--cchhHHHHHHHHHHHHHHHHHHHhccCCccceec
Confidence 345678999988876 4566678999999999999999999999997654
No 55
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.0032 Score=53.62 Aligned_cols=52 Identities=31% Similarity=0.598 Sum_probs=42.3
Q ss_pred CCCCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHH--cCCCCCccccccc
Q 029389 136 LGPEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWME--RSPTCPVCSKVMV 189 (194)
Q Consensus 136 ~~~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~--~~~tCPvCR~~v~ 189 (194)
.....+.+|++|-+.=. .+....+|+|+||.-||..-+. .+.+||.|...++
T Consensus 234 s~~t~~~~C~~Cg~~Pt--iP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 234 STGTSDTECPVCGEPPT--IPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccccCCceeeccCCCCC--CCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 44466789999998754 6777788999999999998775 4578999988765
No 56
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.39 E-value=0.0014 Score=58.60 Aligned_cols=48 Identities=27% Similarity=0.664 Sum_probs=38.8
Q ss_pred cccccccccccCCCCeEEecCCCeecHHHHHHHHHc--CCCCCcccccccCCC
Q 029389 142 DVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMER--SPTCPVCSKVMVFDE 192 (194)
Q Consensus 142 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~--~~tCPvCR~~v~~~~ 192 (194)
..|.||-|.- +.+++-||||..|..|+..|-.. .++||.||-++.-.+
T Consensus 370 eLCKICaend---KdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 370 ELCKICAEND---KDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHHhhccC---CCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 4699999873 46666799999999999999833 578999999876544
No 57
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.38 E-value=0.0026 Score=40.39 Aligned_cols=44 Identities=25% Similarity=0.579 Sum_probs=22.5
Q ss_pred cccccccccCCCCe-EEecCCCeecHHHHHHHHH-cCCCCCccccc
Q 029389 144 CPTCLEEYTLENPK-IVTQCRHHYHLSCIYEWME-RSPTCPVCSKV 187 (194)
Q Consensus 144 C~ICle~~~~~~~~-~~l~C~H~FH~~CI~~Wl~-~~~tCPvCR~~ 187 (194)
|++|.+++...+.. .--+|++.+++.|...-++ ....||-||++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence 78999999543332 2235789999999888775 47789999986
No 58
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=96.26 E-value=0.0035 Score=60.43 Aligned_cols=50 Identities=30% Similarity=0.675 Sum_probs=37.5
Q ss_pred CCCCCCcccccccccccCCCCe-EEecCCCeecHHHHHHHHHcC-------CCCCccc
Q 029389 136 LGPEDEDVCPTCLEEYTLENPK-IVTQCRHHYHLSCIYEWMERS-------PTCPVCS 185 (194)
Q Consensus 136 ~~~~~~~~C~ICle~~~~~~~~-~~l~C~H~FH~~CI~~Wl~~~-------~tCPvCR 185 (194)
....+..+|.||.+.+.....+ .-..|=|+||+.||..|-+.. -.||.|+
T Consensus 186 ~l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cq 243 (950)
T KOG1952|consen 186 QLSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQ 243 (950)
T ss_pred HHhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCccc
Confidence 4456778999999999864432 223478999999999998542 1599998
No 59
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=96.23 E-value=0.0036 Score=49.33 Aligned_cols=50 Identities=22% Similarity=0.653 Sum_probs=36.2
Q ss_pred CCCCCcccccccccccCCCCeEEecCC--C---eecHHHHHHHHHc--CCCCCcccccccC
Q 029389 137 GPEDEDVCPTCLEEYTLENPKIVTQCR--H---HYHLSCIYEWMER--SPTCPVCSKVMVF 190 (194)
Q Consensus 137 ~~~~~~~C~ICle~~~~~~~~~~l~C~--H---~FH~~CI~~Wl~~--~~tCPvCR~~v~~ 190 (194)
.+..+..|-||.++-.. ..-||. . .-|.+|+.+|+.. ..+|++|+++...
T Consensus 4 ~s~~~~~CRIC~~~~~~----~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 4 VSLMDKCCWICKDEYDV----VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred cCCCCCeeEecCCCCCC----ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 34567899999988532 224664 3 5699999999954 4579999987654
No 60
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.0015 Score=42.56 Aligned_cols=46 Identities=22% Similarity=0.555 Sum_probs=32.8
Q ss_pred CcccccccccccCCCCeEEecCCCe-ecHHHHHHHH-HcCCCCCccccccc
Q 029389 141 EDVCPTCLEEYTLENPKIVTQCRHH-YHLSCIYEWM-ERSPTCPVCSKVMV 189 (194)
Q Consensus 141 ~~~C~ICle~~~~~~~~~~l~C~H~-FH~~CI~~Wl-~~~~tCPvCR~~v~ 189 (194)
.++|.||+|.-. ..++.-|||. .+.+|-.+-+ ..+..||+||+++.
T Consensus 7 ~dECTICye~pv---dsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPV---DSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcc---hHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 378999998632 2233469994 6777765554 47889999998763
No 61
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.02 E-value=0.0029 Score=45.74 Aligned_cols=36 Identities=25% Similarity=0.441 Sum_probs=29.4
Q ss_pred CCCCCCcccccccccccCCCCeEEecCCCeecHHHHH
Q 029389 136 LGPEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIY 172 (194)
Q Consensus 136 ~~~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~ 172 (194)
....++..|++|-..+.. ....+.||||.||..|+.
T Consensus 73 v~i~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 73 VVITESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred EEECCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 344567789999999975 567778999999999975
No 62
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.02 E-value=0.0069 Score=50.98 Aligned_cols=53 Identities=19% Similarity=0.317 Sum_probs=47.2
Q ss_pred CCcccccccccccCCCCeEEe-cCCCeecHHHHHHHHHcCCCCCcccccccCCC
Q 029389 140 DEDVCPTCLEEYTLENPKIVT-QCRHHYHLSCIYEWMERSPTCPVCSKVMVFDE 192 (194)
Q Consensus 140 ~~~~C~ICle~~~~~~~~~~l-~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~~~ 192 (194)
....|+||.+.+....+..+| +|||+|..+|+...++.-..||+|.+++..+|
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd 273 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD 273 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence 567999999999987787777 69999999999999999999999999887655
No 63
>PHA02862 5L protein; Provisional
Probab=95.89 E-value=0.0048 Score=47.90 Aligned_cols=48 Identities=19% Similarity=0.578 Sum_probs=33.3
Q ss_pred CcccccccccccCCCCeEEecC---CCeecHHHHHHHHH--cCCCCCcccccccC
Q 029389 141 EDVCPTCLEEYTLENPKIVTQC---RHHYHLSCIYEWME--RSPTCPVCSKVMVF 190 (194)
Q Consensus 141 ~~~C~ICle~~~~~~~~~~l~C---~H~FH~~CI~~Wl~--~~~tCPvCR~~v~~ 190 (194)
.+.|-||+++-+++ ..--.| ...-|.+|+.+|++ ++..|++|+.+...
T Consensus 2 ~diCWIC~~~~~e~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVCDER--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcCCCC--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 35799999985422 111113 35789999999995 44679999987644
No 64
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.0032 Score=54.12 Aligned_cols=45 Identities=24% Similarity=0.524 Sum_probs=39.8
Q ss_pred CcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccccc
Q 029389 141 EDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVM 188 (194)
Q Consensus 141 ~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v 188 (194)
...|-||.+.|. ..+++.|+|.|+..|...-+++...|.+|.+.+
T Consensus 241 Pf~c~icr~~f~---~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 241 PFKCFICRKYFY---RPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred Cccccccccccc---cchhhcCCceeehhhhccccccCCcceeccccc
Confidence 456999999997 557789999999999999999999999998764
No 65
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.81 E-value=0.0039 Score=57.55 Aligned_cols=55 Identities=29% Similarity=0.573 Sum_probs=43.8
Q ss_pred CCCCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHH-----cCCCCCcccccccCCCC
Q 029389 136 LGPEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWME-----RSPTCPVCSKVMVFDET 193 (194)
Q Consensus 136 ~~~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~-----~~~tCPvCR~~v~~~~~ 193 (194)
....++..|.+|-+.-+ ..+...|.|.||+-||.++++ .+.+||+|...+..|.+
T Consensus 531 ~enk~~~~C~lc~d~ae---d~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDls 590 (791)
T KOG1002|consen 531 DENKGEVECGLCHDPAE---DYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLS 590 (791)
T ss_pred ccccCceeecccCChhh---hhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccccc
Confidence 34456788999998753 567789999999999988884 34689999998877754
No 66
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.0096 Score=49.57 Aligned_cols=52 Identities=21% Similarity=0.497 Sum_probs=41.0
Q ss_pred CCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHc--------CCCCCcccccccC
Q 029389 138 PEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMER--------SPTCPVCSKVMVF 190 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~--------~~tCPvCR~~v~~ 190 (194)
.+....|..|-..+..++. +.|.|-|.||.+|+.+|-.. ...||.|..++-.
T Consensus 47 sDY~pNC~LC~t~La~gdt-~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 47 SDYNPNCRLCNTPLASGDT-TRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred cCCCCCCceeCCccccCcc-eeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 3556789999988887665 44789999999999999853 2469999887743
No 67
>PHA03096 p28-like protein; Provisional
Probab=95.65 E-value=0.0058 Score=52.73 Aligned_cols=47 Identities=26% Similarity=0.521 Sum_probs=32.7
Q ss_pred cccccccccccCCC----CeEEe-cCCCeecHHHHHHHHHcC---CC---CCcccccc
Q 029389 142 DVCPTCLEEYTLEN----PKIVT-QCRHHYHLSCIYEWMERS---PT---CPVCSKVM 188 (194)
Q Consensus 142 ~~C~ICle~~~~~~----~~~~l-~C~H~FH~~CI~~Wl~~~---~t---CPvCR~~v 188 (194)
..|.||||...... .-..| .|.|.|+..||..|...+ .+ ||.|+..+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~~~~ 236 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNTVI 236 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccchhhHH
Confidence 68999999876421 22344 599999999999999432 23 55555443
No 68
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.0045 Score=49.03 Aligned_cols=33 Identities=24% Similarity=0.464 Sum_probs=28.8
Q ss_pred CCCCCCcccccccccccCCCCeEEecCCCeecH
Q 029389 136 LGPEDEDVCPTCLEEYTLENPKIVTQCRHHYHL 168 (194)
Q Consensus 136 ~~~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~ 168 (194)
...++.-+|.||||++..++.+..|||-.+||+
T Consensus 172 VL~ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 172 VLKDDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred hhcccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 334566799999999999999999999999996
No 69
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=95.19 E-value=0.0094 Score=36.91 Aligned_cols=41 Identities=24% Similarity=0.606 Sum_probs=22.8
Q ss_pred cccccccccCCCCeEEecCCCeecHHHHHHHHHcCC--CCCcc
Q 029389 144 CPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSP--TCPVC 184 (194)
Q Consensus 144 C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~--tCPvC 184 (194)
|.+|-+.+..|..-....|+=.+|..|+..+++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 677888776544333345888999999999996554 79987
No 70
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=0.015 Score=52.12 Aligned_cols=38 Identities=21% Similarity=0.402 Sum_probs=32.6
Q ss_pred CCCcccccccccccCCCCeEEecCCCeecHHHHHHHHH
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWME 176 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~ 176 (194)
.....|.||+++.........+||+|+||+.|+.....
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFT 219 (445)
T ss_pred hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHH
Confidence 34578999999987557778899999999999999884
No 71
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.97 E-value=0.034 Score=47.22 Aligned_cols=54 Identities=22% Similarity=0.487 Sum_probs=41.9
Q ss_pred CCCCcccccccccccCCCCeEE-ecCCCeecHHHHHHHHHcCCCCCcccccccCCC
Q 029389 138 PEDEDVCPTCLEEYTLENPKIV-TQCRHHYHLSCIYEWMERSPTCPVCSKVMVFDE 192 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~~~~-l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~~~ 192 (194)
......|||...+|......+. .+|||+|-..+|.+-- ....||+|.+++...|
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~D 164 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEED 164 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCC
Confidence 4667899999999964444444 4899999999999973 4567999998876554
No 72
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=94.79 E-value=0.017 Score=37.64 Aligned_cols=47 Identities=30% Similarity=0.545 Sum_probs=35.2
Q ss_pred CcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccccccCCC
Q 029389 141 EDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVFDE 192 (194)
Q Consensus 141 ~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~~~ 192 (194)
+..|-.|... +....+++|+|..+..|... ++-+.||+|.+.+..++
T Consensus 7 ~~~~~~~~~~---~~~~~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFV---GTKGTVLPCGHLICDNCFPG--ERYNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEcccc---ccccccccccceeeccccCh--hhccCCCCCCCcccCCC
Confidence 4455555544 34567899999999999665 56677999999988765
No 73
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=94.31 E-value=0.023 Score=48.72 Aligned_cols=46 Identities=39% Similarity=0.693 Sum_probs=38.5
Q ss_pred CcccccccccccCC-CCeEEecCCCeecHHHHHHHHHcCCCCCcccc
Q 029389 141 EDVCPTCLEEYTLE-NPKIVTQCRHHYHLSCIYEWMERSPTCPVCSK 186 (194)
Q Consensus 141 ~~~C~ICle~~~~~-~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~ 186 (194)
+..||||.+.+... ..+..++|+|.-|..|+.+....+-+||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 44599999987653 45667899999999999998877799999988
No 74
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=94.16 E-value=0.021 Score=36.13 Aligned_cols=44 Identities=30% Similarity=0.668 Sum_probs=26.3
Q ss_pred ccccccccccCCCCeEEecC-CCeecHHHHHHHHHcCCCCCcccccccCC
Q 029389 143 VCPTCLEEYTLENPKIVTQC-RHHYHLSCIYEWMERSPTCPVCSKVMVFD 191 (194)
Q Consensus 143 ~C~ICle~~~~~~~~~~l~C-~H~FH~~CI~~Wl~~~~tCPvCR~~v~~~ 191 (194)
.|--|+-.. .....| .|..+..|+...|.++..||+|.++++..
T Consensus 4 nCKsCWf~~-----k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 4 NCKSCWFAN-----KGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp ---SS-S-------SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred cChhhhhcC-----CCeeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 466666543 244568 59999999999999999999999998864
No 75
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.07 E-value=0.0033 Score=55.95 Aligned_cols=50 Identities=18% Similarity=0.433 Sum_probs=42.1
Q ss_pred CcccccccccccCC-CCeEEecCCCeecHHHHHHHHHcCCCCCcccccccC
Q 029389 141 EDVCPTCLEEYTLE-NPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVF 190 (194)
Q Consensus 141 ~~~C~ICle~~~~~-~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~ 190 (194)
...|+||.+.|+.. +....+-|+|.+|.+||.+||.....||.|+.+++.
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPK 246 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence 45799999999854 445567899999999999999888889999988763
No 76
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.97 E-value=0.041 Score=48.54 Aligned_cols=44 Identities=30% Similarity=0.725 Sum_probs=32.8
Q ss_pred CCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccccc
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVM 188 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v 188 (194)
...+.|.||+++.. ....+||||.-+ |+.--. ...+||+||+.+
T Consensus 303 ~~p~lcVVcl~e~~---~~~fvpcGh~cc--ct~cs~-~l~~CPvCR~rI 346 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPK---SAVFVPCGHVCC--CTLCSK-HLPQCPVCRQRI 346 (355)
T ss_pred CCCCceEEecCCcc---ceeeecCCcEEE--chHHHh-hCCCCchhHHHH
Confidence 34578999999976 477789999966 665543 334599999865
No 77
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=0.041 Score=44.36 Aligned_cols=56 Identities=20% Similarity=0.503 Sum_probs=38.3
Q ss_pred CCCCCcccccccccccCCC----CeEEecCCCeecHHHHHHHHHcC-----------CCCCcccccccCCC
Q 029389 137 GPEDEDVCPTCLEEYTLEN----PKIVTQCRHHYHLSCIYEWMERS-----------PTCPVCSKVMVFDE 192 (194)
Q Consensus 137 ~~~~~~~C~ICle~~~~~~----~~~~l~C~H~FH~~CI~~Wl~~~-----------~tCPvCR~~v~~~~ 192 (194)
..++...|.||..--..+. ..--..|+.-||.-|+..||+.- ..||.|.+++-.+-
T Consensus 161 kdd~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKm 231 (234)
T KOG3268|consen 161 KDDELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKM 231 (234)
T ss_pred cchhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeec
Confidence 3345567888875433222 23345799999999999999631 25999998876553
No 78
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.88 E-value=0.032 Score=48.37 Aligned_cols=48 Identities=31% Similarity=0.614 Sum_probs=36.8
Q ss_pred cccccccccccCCCCeEEecCCCeecHHHHHHHH-HcCCCCCccc-ccccCC
Q 029389 142 DVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWM-ERSPTCPVCS-KVMVFD 191 (194)
Q Consensus 142 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl-~~~~tCPvCR-~~v~~~ 191 (194)
..|+.|-..+. ++...--|+|.|+.+||...| ..-..||.|. +.|..|
T Consensus 275 LkCplc~~Llr--np~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld 324 (427)
T COG5222 275 LKCPLCHCLLR--NPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLD 324 (427)
T ss_pred ccCcchhhhhh--CcccCccccchHHHHHHhhhhhhccccCCCcccccchhh
Confidence 78999988775 455544589999999999888 5667899994 455443
No 79
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.79 E-value=0.04 Score=48.74 Aligned_cols=48 Identities=19% Similarity=0.636 Sum_probs=39.8
Q ss_pred CCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCccccccc
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
.++..|+||...-- ..+..||+|.=|..||.+.|...+.|=.|+..+.
T Consensus 420 sEd~lCpICyA~pi---~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPI---NAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccc---hhhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 56789999986521 2345799999999999999999999999998765
No 80
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.75 E-value=0.066 Score=47.33 Aligned_cols=50 Identities=20% Similarity=0.383 Sum_probs=39.9
Q ss_pred CCCCCCcccccccccccCCCCeEEecCCCeecHHHHHH--HHHcCCCCCcccccc
Q 029389 136 LGPEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYE--WMERSPTCPVCSKVM 188 (194)
Q Consensus 136 ~~~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~--Wl~~~~tCPvCR~~v 188 (194)
...++...|.||-+.++ -..++||+|..|.-|..+ .|-..+.|++||.+.
T Consensus 56 dtDEen~~C~ICA~~~T---Ys~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 56 DTDEENMNCQICAGSTT---YSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ccccccceeEEecCCce---EEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 55567788999999876 567899999999999754 344677899999764
No 81
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.42 E-value=0.018 Score=49.67 Aligned_cols=42 Identities=21% Similarity=0.638 Sum_probs=31.2
Q ss_pred CcccccccccccCCCCeEEecCCCe-ecHHHHHHHHHcCCCCCccccccc
Q 029389 141 EDVCPTCLEEYTLENPKIVTQCRHH-YHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 141 ~~~C~ICle~~~~~~~~~~l~C~H~-FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
...|.||++.-. ....|+|||. -|..|-.. -..||+||+.|+
T Consensus 300 ~~LC~ICmDaP~---DCvfLeCGHmVtCt~CGkr----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPR---DCVFLECGHMVTCTKCGKR----MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCc---ceEEeecCcEEeehhhccc----cccCchHHHHHH
Confidence 678999998754 5678999994 46666433 347999998764
No 82
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=93.24 E-value=0.094 Score=45.88 Aligned_cols=50 Identities=26% Similarity=0.652 Sum_probs=40.3
Q ss_pred CCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccccccC
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVF 190 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~ 190 (194)
.+...|+||+.... ++.+..--|-+||..||...+...+.|||=..+..+
T Consensus 298 ~~~~~CpvClk~r~--Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v 347 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQ--NPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASV 347 (357)
T ss_pred CccccChhHHhccC--CCceEEecceEEeHHHHHHHHHhcCCCCccCCcchH
Confidence 44568999999876 555555579999999999999999999997665543
No 83
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.56 E-value=0.092 Score=46.29 Aligned_cols=53 Identities=21% Similarity=0.549 Sum_probs=35.2
Q ss_pred CCCCCcccccccccccCCCCe-EEecCCCeecHHHHHHHH-HcCCCCCccccccc
Q 029389 137 GPEDEDVCPTCLEEYTLENPK-IVTQCRHHYHLSCIYEWM-ERSPTCPVCSKVMV 189 (194)
Q Consensus 137 ~~~~~~~C~ICle~~~~~~~~-~~l~C~H~FH~~CI~~Wl-~~~~tCPvCR~~v~ 189 (194)
..++++.|+.|+|+++-.++- .--+||-..|.-|....- .-+..||-||....
T Consensus 10 sedeed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 10 SEDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred cccccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence 445667799999999864433 334688776766744433 23567999998653
No 84
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=90.82 E-value=0.072 Score=53.84 Aligned_cols=45 Identities=29% Similarity=0.658 Sum_probs=38.9
Q ss_pred CCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccc
Q 029389 140 DEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSK 186 (194)
Q Consensus 140 ~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~ 186 (194)
+...|.||++.+. +...+..|+|.++..|+..|+.++..||.|+.
T Consensus 1152 ~~~~c~ic~dil~--~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1152 GHFVCEICLDILR--NQGGIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred cccchHHHHHHHH--hcCCeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 3458999999987 45566779999999999999999999999973
No 85
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.69 E-value=0.13 Score=50.09 Aligned_cols=42 Identities=26% Similarity=0.675 Sum_probs=33.5
Q ss_pred CcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCccccc
Q 029389 141 EDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKV 187 (194)
Q Consensus 141 ~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~ 187 (194)
...|.+|--.++ -+.+-..|+|.||.+|+. .....||-|+-+
T Consensus 840 ~skCs~C~~~Ld--lP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 840 VSKCSACEGTLD--LPFVHFLCGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred eeeecccCCccc--cceeeeecccHHHHHhhc---cCcccCCccchh
Confidence 368999987775 456667899999999998 556789999863
No 86
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=90.53 E-value=0.17 Score=44.00 Aligned_cols=47 Identities=30% Similarity=0.502 Sum_probs=35.7
Q ss_pred CCCCCCcccccccccccCCCCeEEecC--CCeecHHHHHHHHHcCCCCCccccccc
Q 029389 136 LGPEDEDVCPTCLEEYTLENPKIVTQC--RHHYHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 136 ~~~~~~~~C~ICle~~~~~~~~~~l~C--~H~FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
....+-.+||||.+.+. +-+.+| ||+-|..|-. +.+..||.||.++.
T Consensus 43 ~~~~~lleCPvC~~~l~----~Pi~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 43 LLDLDLLDCPVCFNPLS----PPIFQCDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred ccchhhccCchhhccCc----ccceecCCCcEehhhhhh---hhcccCCccccccc
Confidence 44456689999999986 344678 6888888854 56778999998875
No 87
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.26 E-value=0.16 Score=49.64 Aligned_cols=39 Identities=26% Similarity=0.550 Sum_probs=32.3
Q ss_pred CCCCCCcccccccccccCCCCeEEecCCCeecHHHHHHHH
Q 029389 136 LGPEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWM 175 (194)
Q Consensus 136 ~~~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl 175 (194)
...+..+.|.+|.-.+.. .+-.+.+|||.||.+||.+-+
T Consensus 812 ~v~ep~d~C~~C~~~ll~-~pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 812 RVLEPQDSCDHCGRPLLI-KPFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred EEecCccchHHhcchhhc-CcceeeeccchHHHHHHHHHH
Confidence 455677899999988873 466778999999999998876
No 88
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.05 E-value=0.3 Score=43.72 Aligned_cols=50 Identities=22% Similarity=0.416 Sum_probs=41.6
Q ss_pred CCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcC---CCCCccccc
Q 029389 138 PEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERS---PTCPVCSKV 187 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~---~tCPvCR~~ 187 (194)
...-..|||=.+.-+++|+...|.|||+...+-|.+-.+.. ..||.|=.+
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 34467999999999999999999999999999999977543 479999443
No 89
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=89.39 E-value=0.16 Score=48.87 Aligned_cols=44 Identities=25% Similarity=0.805 Sum_probs=36.0
Q ss_pred cccccccccccCCCCeEEecCCCeecHHHHHHHHHcC--CCCCccccccc
Q 029389 142 DVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERS--PTCPVCSKVMV 189 (194)
Q Consensus 142 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~--~tCPvCR~~v~ 189 (194)
..|.||++ . +....+.|+|.|+.+|+.+-++.. ..||+||..+.
T Consensus 455 ~~c~ic~~-~---~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-L---DSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-c---ccceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 79999999 2 467778999999999999988543 35999997653
No 90
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=88.83 E-value=0.16 Score=44.33 Aligned_cols=42 Identities=21% Similarity=0.597 Sum_probs=27.7
Q ss_pred ccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccccc
Q 029389 143 VCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVM 188 (194)
Q Consensus 143 ~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v 188 (194)
-|--|--.+. ---++++|.|+||++|... ..-+.||.|...|
T Consensus 92 fCd~Cd~PI~--IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 92 FCDRCDFPIA--IYGRMIPCKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred eecccCCcce--eeecccccchhhhhhhhhc--CccccCcCcccHH
Confidence 3555544433 1235679999999999653 3456899997654
No 91
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=88.52 E-value=0.28 Score=41.88 Aligned_cols=49 Identities=27% Similarity=0.698 Sum_probs=36.9
Q ss_pred CcccccccccccCCCC-eEEecCC-----CeecHHHHHHHHH--cCCCCCccccccc
Q 029389 141 EDVCPTCLEEYTLENP-KIVTQCR-----HHYHLSCIYEWME--RSPTCPVCSKVMV 189 (194)
Q Consensus 141 ~~~C~ICle~~~~~~~-~~~l~C~-----H~FH~~CI~~Wl~--~~~tCPvCR~~v~ 189 (194)
+..|-||.++....+. ....+|. +..|..|+..|+. .+..|-+|.....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 5789999998764322 4556773 5779999999996 6678999987543
No 92
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.90 E-value=0.24 Score=42.11 Aligned_cols=51 Identities=27% Similarity=0.663 Sum_probs=35.5
Q ss_pred CCCCCcccccccccccCCCCeE--EecC-----CCeecHHHHHHHHHcC--------CCCCcccccc
Q 029389 137 GPEDEDVCPTCLEEYTLENPKI--VTQC-----RHHYHLSCIYEWMERS--------PTCPVCSKVM 188 (194)
Q Consensus 137 ~~~~~~~C~ICle~~~~~~~~~--~l~C-----~H~FH~~CI~~Wl~~~--------~tCPvCR~~v 188 (194)
..+.+..|=||+..=+ ++... +-|| .|=.|..||..|+..+ .+||.|+.+-
T Consensus 16 ~~e~eR~CWiCF~Tde-Dn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 16 NQELERCCWICFATDE-DNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred ccccceeEEEEeccCc-ccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 3456788999998744 33333 2366 4789999999999322 2599998763
No 93
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=87.78 E-value=0.32 Score=47.38 Aligned_cols=54 Identities=31% Similarity=0.741 Sum_probs=40.4
Q ss_pred CCCCcccccccccccCCCCeEEecCC-----CeecHHHHHHHHHcC--CCCCcccccccCCC
Q 029389 138 PEDEDVCPTCLEEYTLENPKIVTQCR-----HHYHLSCIYEWMERS--PTCPVCSKVMVFDE 192 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~~~~l~C~-----H~FH~~CI~~Wl~~~--~tCPvCR~~v~~~~ 192 (194)
.+++..|-||..+=..+++.- -||. ...|.+|+.+|+.-+ ..|-+|+.++.+++
T Consensus 9 N~d~~~CRICr~e~~~d~pLf-hPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~ 69 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPLF-HPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKD 69 (1175)
T ss_pred CccchhceeecCCCCCCCcCc-ccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeee
Confidence 355689999998866655533 3553 468999999999654 46999999887764
No 94
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=86.48 E-value=0.84 Score=36.09 Aligned_cols=37 Identities=22% Similarity=0.488 Sum_probs=21.8
Q ss_pred CCcccccccccccC---------CCCeEEecCCC-eecHHHHHHHHH
Q 029389 140 DEDVCPTCLEEYTL---------ENPKIVTQCRH-HYHLSCIYEWME 176 (194)
Q Consensus 140 ~~~~C~ICle~~~~---------~~~~~~l~C~H-~FH~~CI~~Wl~ 176 (194)
++.+|+||||-=-. ++..+-.-|+- .-|..||++.-+
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 46789999987431 11111122432 457889998874
No 95
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=85.49 E-value=1 Score=29.26 Aligned_cols=45 Identities=24% Similarity=0.713 Sum_probs=31.1
Q ss_pred CCcccccccccccCCCCeEE-ecCCCeecHHHHHHHHHcCCCCCc--ccccc
Q 029389 140 DEDVCPTCLEEYTLENPKIV-TQCRHHYHLSCIYEWMERSPTCPV--CSKVM 188 (194)
Q Consensus 140 ~~~~C~ICle~~~~~~~~~~-l~C~H~FH~~CI~~Wl~~~~tCPv--CR~~v 188 (194)
....|.+|-+.|+.++.+++ ..|+-.+|+.| |. ....|-. |...+
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C---~~-~~g~C~~~~c~~~~ 51 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDC---WE-KAGGCINYSCGTGF 51 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHH---Hh-hCCceEeccCCCCc
Confidence 45679999999986555555 45999999999 43 2444544 55443
No 96
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=85.37 E-value=0.54 Score=45.54 Aligned_cols=28 Identities=32% Similarity=0.829 Sum_probs=24.0
Q ss_pred CeEEecCCCeecHHHHHHHHHcCCCCCc
Q 029389 156 PKIVTQCRHHYHLSCIYEWMERSPTCPV 183 (194)
Q Consensus 156 ~~~~l~C~H~FH~~CI~~Wl~~~~tCPv 183 (194)
......|+|.-|.+|..+|++....||.
T Consensus 1042 s~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1042 SNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred chhhccccccccHHHHHHHHhcCCcCCC
Confidence 3445679999999999999999999984
No 97
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=85.03 E-value=0.53 Score=41.99 Aligned_cols=53 Identities=23% Similarity=0.626 Sum_probs=34.9
Q ss_pred CCCCCcccccccccccCCCCeE---------------------EecCCCeecHHHHHHHHHc-------------CCCCC
Q 029389 137 GPEDEDVCPTCLEEYTLENPKI---------------------VTQCRHHYHLSCIYEWMER-------------SPTCP 182 (194)
Q Consensus 137 ~~~~~~~C~ICle~~~~~~~~~---------------------~l~C~H~FH~~CI~~Wl~~-------------~~tCP 182 (194)
..++.+.|--|+..-. +.++ .--|.-.+|.+|+-+|+.. +-.||
T Consensus 267 ~~~e~e~CigC~~~~~--~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CP 344 (358)
T PF10272_consen 267 SGQELEPCIGCMQAQP--NVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCP 344 (358)
T ss_pred CccccCCccccccCCC--CcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCC
Confidence 3466778888997643 1111 1124567899999999942 23699
Q ss_pred cccccccCC
Q 029389 183 VCSKVMVFD 191 (194)
Q Consensus 183 vCR~~v~~~ 191 (194)
.||+.+-.-
T Consensus 345 tCRa~FCil 353 (358)
T PF10272_consen 345 TCRAKFCIL 353 (358)
T ss_pred CCcccceee
Confidence 999986543
No 98
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=84.11 E-value=1.4 Score=27.97 Aligned_cols=43 Identities=26% Similarity=0.610 Sum_probs=20.1
Q ss_pred cccccccccccCCCCeEEecCCCeecHHHHHHHHH---cC--CCCCccccc
Q 029389 142 DVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWME---RS--PTCPVCSKV 187 (194)
Q Consensus 142 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~---~~--~tCPvCR~~ 187 (194)
..|+|....+. .+++-..|.|.-+.+ +..||+ +. -.||+|.++
T Consensus 3 L~CPls~~~i~--~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIR--IPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-S--SEEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEE--eCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 46888887775 466767899973322 344553 22 259999863
No 99
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.72 E-value=0.64 Score=43.55 Aligned_cols=51 Identities=31% Similarity=0.723 Sum_probs=41.3
Q ss_pred CCCCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccccccCCCC
Q 029389 136 LGPEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVFDET 193 (194)
Q Consensus 136 ~~~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~~~~ 193 (194)
...+..+.|.||+++. ..+..+|. |..|+.+|+..+..||+|++.+..++.
T Consensus 474 ~l~~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~ 524 (543)
T KOG0802|consen 474 QLREPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDDF 524 (543)
T ss_pred hhhcccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhcccc
Confidence 3345567899999997 34556777 899999999999999999998877764
No 100
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.37 E-value=0.47 Score=42.66 Aligned_cols=38 Identities=24% Similarity=0.568 Sum_probs=28.5
Q ss_pred CCccccccc-ccccCCCCeEEecCCCeecHHHHHHHHHc
Q 029389 140 DEDVCPTCL-EEYTLENPKIVTQCRHHYHLSCIYEWMER 177 (194)
Q Consensus 140 ~~~~C~ICl-e~~~~~~~~~~l~C~H~FH~~CI~~Wl~~ 177 (194)
...+|.||. +....+....+..|+|.|+.+|+.+.++.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 356899999 44443333446789999999999998864
No 101
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.01 E-value=1.1 Score=36.84 Aligned_cols=38 Identities=29% Similarity=0.632 Sum_probs=27.2
Q ss_pred cccccccccCCCCeEEecCCC-eecHHHHHHHHHcCCCCCcccccc
Q 029389 144 CPTCLEEYTLENPKIVTQCRH-HYHLSCIYEWMERSPTCPVCSKVM 188 (194)
Q Consensus 144 C~ICle~~~~~~~~~~l~C~H-~FH~~CI~~Wl~~~~tCPvCR~~v 188 (194)
|-+|-+. +..+..+||.| .+|..|=.. -.+||+|+...
T Consensus 161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~ 199 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLPCRHLCLCGICDES----LRICPICRSPK 199 (207)
T ss_pred ceecCcC---CceEEeecccceEeccccccc----CccCCCCcChh
Confidence 8888876 33577789998 566777443 45699998654
No 102
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.06 E-value=0.86 Score=43.46 Aligned_cols=40 Identities=25% Similarity=0.588 Sum_probs=30.7
Q ss_pred CcccccccccccCCC-CeEEecCCCeecHHHHHHHHHcCCCCC
Q 029389 141 EDVCPTCLEEYTLEN-PKIVTQCRHHYHLSCIYEWMERSPTCP 182 (194)
Q Consensus 141 ~~~C~ICle~~~~~~-~~~~l~C~H~FH~~CI~~Wl~~~~tCP 182 (194)
-..|.||+..|.... ..+.+.|||..|..|+..-.++. ||
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~s--cp 51 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNAS--CP 51 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhcc--CC
Confidence 457999998887532 44568899999999998865554 77
No 103
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.47 E-value=1.8 Score=39.45 Aligned_cols=37 Identities=22% Similarity=0.500 Sum_probs=31.3
Q ss_pred CCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHc
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMER 177 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~ 177 (194)
.....|.||.+.+.. ....+.|+|.|+..|+...+.+
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 456899999999874 5677899999999999999854
No 104
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.12 E-value=1.5 Score=38.10 Aligned_cols=30 Identities=30% Similarity=0.672 Sum_probs=22.8
Q ss_pred cCCCeecHHHHHHHHH-------------cCCCCCcccccccC
Q 029389 161 QCRHHYHLSCIYEWME-------------RSPTCPVCSKVMVF 190 (194)
Q Consensus 161 ~C~H~FH~~CI~~Wl~-------------~~~tCPvCR~~v~~ 190 (194)
-|.-.+|.+|+.+|+. .+-+||+||+.+-.
T Consensus 324 ~crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 324 ICRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred ccccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 3567889999988873 34579999997644
No 105
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.37 E-value=1.4 Score=42.83 Aligned_cols=46 Identities=26% Similarity=0.571 Sum_probs=34.7
Q ss_pred CCCCcccccccccccCC----CCeEEecCCCeecHHHHHHHHHcCCCCCcc
Q 029389 138 PEDEDVCPTCLEEYTLE----NPKIVTQCRHHYHLSCIYEWMERSPTCPVC 184 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~----~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvC 184 (194)
...+..|.-|++..... ..++++.|+|+||..|+..-+.++. |-.|
T Consensus 781 v~~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 781 VSVEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred EeehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 34456899999887642 4677899999999999988886665 5444
No 106
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=71.63 E-value=1.4 Score=41.59 Aligned_cols=44 Identities=25% Similarity=0.713 Sum_probs=28.2
Q ss_pred CCCccccccccc-----ccCCCCeEEecCCCeecHHHHHHHHHcCCCCCccc
Q 029389 139 EDEDVCPTCLEE-----YTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCS 185 (194)
Q Consensus 139 ~~~~~C~ICle~-----~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR 185 (194)
.....|.||... |..++..+...|+++||..| |-+.+.-||.|-
T Consensus 509 ~~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C---~~r~s~~CPrC~ 557 (580)
T KOG1829|consen 509 GKGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKC---LRRKSPCCPRCE 557 (580)
T ss_pred cCeeeeeeccCCCcccccccccceeHHHHHHHHHHHH---HhccCCCCCchH
Confidence 445677777322 22234455567999999999 434444599994
No 107
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=71.31 E-value=1 Score=43.27 Aligned_cols=46 Identities=24% Similarity=0.595 Sum_probs=35.8
Q ss_pred CCcccccccccccCCCCeEEecCCCeecHHHHHHHHHc---CCCCCcccccc
Q 029389 140 DEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMER---SPTCPVCSKVM 188 (194)
Q Consensus 140 ~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~---~~tCPvCR~~v 188 (194)
-..+|+||++.+.+ ...+.|.|.|...|+..-+.. ...||+|+..+
T Consensus 20 k~lEc~ic~~~~~~---p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~ 68 (684)
T KOG4362|consen 20 KILECPICLEHVKE---PSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDI 68 (684)
T ss_pred hhccCCceeEEeec---cchhhhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence 35689999999973 367899999999998765543 45699998654
No 109
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=69.51 E-value=3.3 Score=40.56 Aligned_cols=51 Identities=12% Similarity=0.300 Sum_probs=36.1
Q ss_pred CCCcccccccccccCC-CCeEEe---cCCCeecHHHHHHHHHc------CCCCCccccccc
Q 029389 139 EDEDVCPTCLEEYTLE-NPKIVT---QCRHHYHLSCIYEWMER------SPTCPVCSKVMV 189 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~-~~~~~l---~C~H~FH~~CI~~Wl~~------~~tCPvCR~~v~ 189 (194)
.+.++|.||+-++... +....+ .|.|.||-.||..|+.+ +-.|+.|..-|.
T Consensus 94 a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 94 AESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred ccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 3457899999888762 122233 49999999999999953 335888876553
No 110
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=69.20 E-value=2.5 Score=35.09 Aligned_cols=48 Identities=23% Similarity=0.585 Sum_probs=36.8
Q ss_pred CCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccccc
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVM 188 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v 188 (194)
+.-..|.+|-+-.- ...+.-.|+-.+|..|+...+++...||.|..-+
T Consensus 179 dnlk~Cn~Ch~LvI--qg~rCg~c~i~~h~~c~qty~q~~~~cphc~d~w 226 (235)
T KOG4718|consen 179 DNLKNCNLCHCLVI--QGIRCGSCNIQYHRGCIQTYLQRRDICPHCGDLW 226 (235)
T ss_pred HHHHHHhHhHHHhh--eeeccCcccchhhhHHHHHHhcccCcCCchhccc
Confidence 44568999988754 2334446788899999999999999999995443
No 111
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=69.06 E-value=3.7 Score=33.58 Aligned_cols=41 Identities=22% Similarity=0.771 Sum_probs=28.6
Q ss_pred CCccccccccc-----ccCCCCeEEecCCCeecHHHHHHHHHcCCCCCccc
Q 029389 140 DEDVCPTCLEE-----YTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCS 185 (194)
Q Consensus 140 ~~~~C~ICle~-----~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR 185 (194)
....|.||-+. |..+...+-..|+-.||..|.. + ..||-|.
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~---~--~~CpkC~ 196 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR---K--KSCPKCA 196 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC---C--CCCCCcH
Confidence 45688888753 2323444555799999999965 2 6699994
No 112
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=67.47 E-value=3.7 Score=31.62 Aligned_cols=51 Identities=22% Similarity=0.361 Sum_probs=34.6
Q ss_pred CCcccccccccccCCCCeEEec-CCCeecHHHHHHHHH---cCCCCCcccccccC
Q 029389 140 DEDVCPTCLEEYTLENPKIVTQ-CRHHYHLSCIYEWME---RSPTCPVCSKVMVF 190 (194)
Q Consensus 140 ~~~~C~ICle~~~~~~~~~~l~-C~H~FH~~CI~~Wl~---~~~tCPvCR~~v~~ 190 (194)
.-.+|.||.|.-.++.-..--. ||-..+..|-..-|+ ....||+|+..+..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 5689999999876432222112 798888887655443 45689999987643
No 113
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=62.93 E-value=7.1 Score=34.39 Aligned_cols=49 Identities=27% Similarity=0.442 Sum_probs=39.3
Q ss_pred CCCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHc---CCCCCccc
Q 029389 137 GPEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMER---SPTCPVCS 185 (194)
Q Consensus 137 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~---~~tCPvCR 185 (194)
....-..||+=-|.-..+++...+.|||+.-..-+..-.+. +..||.|-
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 34456789999988888999999999999998888775543 34699994
No 114
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=58.14 E-value=8.1 Score=37.66 Aligned_cols=41 Identities=20% Similarity=0.359 Sum_probs=28.8
Q ss_pred cccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCc
Q 029389 142 DVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPV 183 (194)
Q Consensus 142 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPv 183 (194)
..|.+|-..+. |...-.-.|+|.=|.+|++.|+..+..||.
T Consensus 780 ~~CtVC~~vi~-G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIR-GVDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceee-eeEeecccccccccHHHHHHHHhcCCCCcc
Confidence 36777766553 111112259999999999999998887766
No 115
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=56.42 E-value=4.4 Score=25.02 Aligned_cols=44 Identities=23% Similarity=0.485 Sum_probs=27.2
Q ss_pred ccccccccccCCCCeEEecCCCeecHHHHHHHHH------cCCCCCcccc
Q 029389 143 VCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWME------RSPTCPVCSK 186 (194)
Q Consensus 143 ~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~------~~~tCPvCR~ 186 (194)
.|.||...-..+..+.--.|+..||..|+..-.. ..-.||.|+.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 3888988433233333346899999999865442 1345777753
No 116
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=55.05 E-value=6.1 Score=33.54 Aligned_cols=47 Identities=28% Similarity=0.702 Sum_probs=33.4
Q ss_pred CCccccccccccc-CCCCe-EEec-CCCeecHHHHHHHHHcC-CCCC--cccc
Q 029389 140 DEDVCPTCLEEYT-LENPK-IVTQ-CRHHYHLSCIYEWMERS-PTCP--VCSK 186 (194)
Q Consensus 140 ~~~~C~ICle~~~-~~~~~-~~l~-C~H~FH~~CI~~Wl~~~-~tCP--vCR~ 186 (194)
.+..||||..+.- ..+.+ .+-| |=|..|.+|+.+-+.+. ..|| -|.+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 4568999997743 22322 2335 99999999999999655 4698 7754
No 117
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=54.90 E-value=0.98 Score=30.91 Aligned_cols=40 Identities=23% Similarity=0.637 Sum_probs=20.0
Q ss_pred cccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCccccccc
Q 029389 142 DVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 142 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
..||+|..++.... +|.++..|-.. ++....||-|.++|.
T Consensus 2 ~~CP~C~~~L~~~~-------~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-------GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET-------TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC-------CEEECcccccc-ceecccCCCcccHHH
Confidence 57899988876433 45555555443 345567888888764
No 118
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=54.07 E-value=7.6 Score=33.31 Aligned_cols=48 Identities=29% Similarity=0.562 Sum_probs=33.9
Q ss_pred CcccccccccccCCCCeEEe----cCCCeecHHHHHHHH-H--------cCCCCCcccccc
Q 029389 141 EDVCPTCLEEYTLENPKIVT----QCRHHYHLSCIYEWM-E--------RSPTCPVCSKVM 188 (194)
Q Consensus 141 ~~~C~ICle~~~~~~~~~~l----~C~H~FH~~CI~~Wl-~--------~~~tCPvCR~~v 188 (194)
...|-||.+++.+.+..+.+ .|.-++|..|+..-+ . ....||.|++.+
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 36899999999543333322 388899999999844 2 134699998854
No 119
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=52.50 E-value=6.5 Score=25.21 Aligned_cols=42 Identities=21% Similarity=0.550 Sum_probs=20.0
Q ss_pred cccccccccCCC-------CeEEecCCCeecHHHHHHHHHcCCCCCccc
Q 029389 144 CPTCLEEYTLEN-------PKIVTQCRHHYHLSCIYEWMERSPTCPVCS 185 (194)
Q Consensus 144 C~ICle~~~~~~-------~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR 185 (194)
|--|+..|.... ..+-..|++.|+.+|=.--=+.-..||-|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 455666666431 122346899999999433224445799884
No 120
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.94 E-value=16 Score=31.17 Aligned_cols=52 Identities=17% Similarity=0.280 Sum_probs=37.0
Q ss_pred CCCcccccccccccCCCCe-EEecCCCeecHHHHHHHHHcCCCCCcccccccCCC
Q 029389 139 EDEDVCPTCLEEYTLENPK-IVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVFDE 192 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~-~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~~~ 192 (194)
.....|+|=--+|.....- ....|||+|-..-+.+.- ..+|++|.+.+..+|
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQEDD 161 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCcccccC
Confidence 3457899977777533222 345799999988877753 567999998876665
No 121
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.68 E-value=9.2 Score=33.21 Aligned_cols=48 Identities=21% Similarity=0.499 Sum_probs=34.7
Q ss_pred CCCcccccccccccCCCCeEEecC----CCeecHHHHHHHHHcC-----------CCCCccccccc
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQC----RHHYHLSCIYEWMERS-----------PTCPVCSKVMV 189 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~C----~H~FH~~CI~~Wl~~~-----------~tCPvCR~~v~ 189 (194)
.....|.+|.|.+++. .-..| .|.||+.|-.+-+++. ..||+-...|+
T Consensus 266 ~apLcCTLC~ERLEDT---HFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPSGdkCPLvgS~vP 328 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDT---HFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPSGDKCPLVGSNVP 328 (352)
T ss_pred CCceeehhhhhhhccC---ceeecCCCcccceecccCHHHHHhhcCCCceeCCCCCcCcccCCccc
Confidence 3457899999998743 33446 7999999999999754 25777655544
No 122
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=48.32 E-value=5.9 Score=35.79 Aligned_cols=47 Identities=30% Similarity=0.659 Sum_probs=0.0
Q ss_pred CCCcccccccccccC-----------CCCeEEecCCCeecHHHHHHHHH------cCCCCCcccccc
Q 029389 139 EDEDVCPTCLEEYTL-----------ENPKIVTQCRHHYHLSCIYEWME------RSPTCPVCSKVM 188 (194)
Q Consensus 139 ~~~~~C~ICle~~~~-----------~~~~~~l~C~H~FH~~CI~~Wl~------~~~tCPvCR~~v 188 (194)
.....||+=|..+.. ..+.+-|.|||++.. ..|-. +..+||+||.+=
T Consensus 275 a~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~---h~Wg~~~~~~~~~r~CPlCr~~g 338 (416)
T PF04710_consen 275 AGRPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGY---HNWGQDSDRDPRSRTCPLCRQVG 338 (416)
T ss_dssp -------------------------------------------------------------------
T ss_pred hcCCCCCcCCCccccccccccccccccCceeeccccceeee---cccccccccccccccCCCccccC
Confidence 345678887665532 335567899998764 46763 245799999753
No 123
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=47.22 E-value=9.8 Score=25.16 Aligned_cols=19 Identities=42% Similarity=1.088 Sum_probs=14.0
Q ss_pred HHHHcC------CCCCcccccccCC
Q 029389 173 EWMERS------PTCPVCSKVMVFD 191 (194)
Q Consensus 173 ~Wl~~~------~tCPvCR~~v~~~ 191 (194)
.|++.+ .+||+|..+|...
T Consensus 28 gWmR~nFs~~~~p~CPlC~s~M~~~ 52 (59)
T PF14169_consen 28 GWMRDNFSFEEEPVCPLCKSPMVSG 52 (59)
T ss_pred cccccccccCCCccCCCcCCccccc
Confidence 477644 5799999988654
No 124
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=46.69 E-value=9.3 Score=32.56 Aligned_cols=44 Identities=25% Similarity=0.428 Sum_probs=34.9
Q ss_pred CCcccccccccccCCCCeEEecCCCeecHHHHHHHHHc--CCCCCccc
Q 029389 140 DEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMER--SPTCPVCS 185 (194)
Q Consensus 140 ~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~--~~tCPvCR 185 (194)
-...|||=+..+. ++++-..|+|+|-++=|...+.. .-.||+=.
T Consensus 175 fs~rdPis~~~I~--nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~g 220 (262)
T KOG2979|consen 175 FSNRDPISKKPIV--NPVISKKCGHVYDRDSIMQILCDEITIRCPVLG 220 (262)
T ss_pred hcccCchhhhhhh--chhhhcCcCcchhhhhHHHHhccCceeeccccc
Confidence 3567888877776 78888899999999999999955 44688743
No 125
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.37 E-value=12 Score=33.69 Aligned_cols=44 Identities=23% Similarity=0.582 Sum_probs=30.8
Q ss_pred CcccccccccccC--CCCeEEecCCCeecHHHHHHHHHcCCCCCcc
Q 029389 141 EDVCPTCLEEYTL--ENPKIVTQCRHHYHLSCIYEWMERSPTCPVC 184 (194)
Q Consensus 141 ~~~C~ICle~~~~--~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvC 184 (194)
-..|++|.-.+.. |--...-.|+|.|+..|...|...+..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 4568888766543 3223333499999999999999877777544
No 126
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=46.23 E-value=13 Score=20.65 Aligned_cols=29 Identities=17% Similarity=0.326 Sum_probs=10.7
Q ss_pred ccccccccccCCCCeEEecCCCeecHHHH
Q 029389 143 VCPTCLEEYTLENPKIVTQCRHHYHLSCI 171 (194)
Q Consensus 143 ~C~ICle~~~~~~~~~~l~C~H~FH~~CI 171 (194)
.|.+|.+....+..-.-..|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 57888888764234445678889999886
No 127
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=45.92 E-value=14 Score=25.05 Aligned_cols=12 Identities=17% Similarity=0.808 Sum_probs=8.8
Q ss_pred eecHHHHHHHHH
Q 029389 165 HYHLSCIYEWME 176 (194)
Q Consensus 165 ~FH~~CI~~Wl~ 176 (194)
-||+.||..|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999994
No 128
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=44.06 E-value=12 Score=20.47 Aligned_cols=15 Identities=27% Similarity=0.496 Sum_probs=8.1
Q ss_pred HHHcCCCCCcccccc
Q 029389 174 WMERSPTCPVCSKVM 188 (194)
Q Consensus 174 Wl~~~~tCPvCR~~v 188 (194)
|......||.|...+
T Consensus 10 V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 10 VPESAKFCPHCGYDF 24 (26)
T ss_pred chhhcCcCCCCCCCC
Confidence 344455666665544
No 129
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=43.40 E-value=25 Score=19.57 Aligned_cols=38 Identities=18% Similarity=0.472 Sum_probs=23.6
Q ss_pred ccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCccccccc
Q 029389 143 VCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 143 ~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
.|..|-+.+..+. ..+..=+..||.+|+ .|..|+..|.
T Consensus 1 ~C~~C~~~i~~~~-~~~~~~~~~~H~~Cf--------~C~~C~~~L~ 38 (39)
T smart00132 1 KCAGCGKPIRGGE-LVLRALGKVWHPECF--------KCSKCGKPLG 38 (39)
T ss_pred CccccCCcccCCc-EEEEeCCccccccCC--------CCcccCCcCc
Confidence 3778888876442 222234778888773 4777776653
No 130
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=41.18 E-value=18 Score=21.22 Aligned_cols=26 Identities=23% Similarity=0.770 Sum_probs=15.8
Q ss_pred cccccccccccCCC--------CeEEecCCCeec
Q 029389 142 DVCPTCLEEYTLEN--------PKIVTQCRHHYH 167 (194)
Q Consensus 142 ~~C~ICle~~~~~~--------~~~~l~C~H~FH 167 (194)
.+|+-|...|...+ .+.-..|+|.|+
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 36888888876532 223345778774
No 131
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=39.40 E-value=32 Score=24.03 Aligned_cols=49 Identities=18% Similarity=0.421 Sum_probs=20.8
Q ss_pred CCCcccccccccccC---CCCe-EEecCCCeecHHHHHH-HHHcCCCCCccccc
Q 029389 139 EDEDVCPTCLEEYTL---ENPK-IVTQCRHHYHLSCIYE-WMERSPTCPVCSKV 187 (194)
Q Consensus 139 ~~~~~C~ICle~~~~---~~~~-~~l~C~H~FH~~CI~~-Wl~~~~tCPvCR~~ 187 (194)
.....|.||-+++.. ++.- ....|+--.++.|..- .-+.++.||.|+..
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ 60 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTR 60 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B
T ss_pred cCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCC
Confidence 345789999999864 2222 2235788888999854 33667889999864
No 132
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=37.67 E-value=28 Score=33.04 Aligned_cols=37 Identities=24% Similarity=0.595 Sum_probs=26.1
Q ss_pred CCCcccccccccccC----CC------CeEEecCCCeecHHHHHHHH
Q 029389 139 EDEDVCPTCLEEYTL----EN------PKIVTQCRHHYHLSCIYEWM 175 (194)
Q Consensus 139 ~~~~~C~ICle~~~~----~~------~~~~l~C~H~FH~~CI~~Wl 175 (194)
+....|+||.|.|.+ +. ..+.+.=|-+||..|+.+--
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le~G~ifH~~Cl~e~~ 557 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLEFGRIFHSKCLSEKR 557 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeeccCceeeccccchHH
Confidence 677899999999974 10 12223358899999997654
No 133
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=37.54 E-value=29 Score=30.59 Aligned_cols=50 Identities=24% Similarity=0.507 Sum_probs=36.7
Q ss_pred CcccccccccccCCCC-eEEecCCCeecHHHHHHHHHcCCCCCcccccccC
Q 029389 141 EDVCPTCLEEYTLENP-KIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVF 190 (194)
Q Consensus 141 ~~~C~ICle~~~~~~~-~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~ 190 (194)
...|+||-+.....+. .+-.+|++.-++.|+..-...+..||.||+....
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCcccc
Confidence 3689999998753332 2223578888888888888888999999976543
No 134
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=37.26 E-value=15 Score=24.23 Aligned_cols=37 Identities=16% Similarity=0.375 Sum_probs=19.0
Q ss_pred CCCcccccccccccCCCCeEE-ecCCCeecHHHHHHHH
Q 029389 139 EDEDVCPTCLEEYTLENPKIV-TQCRHHYHLSCIYEWM 175 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~-l~C~H~FH~~CI~~Wl 175 (194)
.+...|.+|...|..-....- -.||++|+..|....+
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 345789999999975333322 3589999999986554
No 135
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=37.25 E-value=11 Score=23.92 Aligned_cols=10 Identities=30% Similarity=1.102 Sum_probs=5.2
Q ss_pred CCCccccccc
Q 029389 180 TCPVCSKVMV 189 (194)
Q Consensus 180 tCPvCR~~v~ 189 (194)
.||||..+|.
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 7999988774
No 136
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=37.11 E-value=6 Score=34.31 Aligned_cols=36 Identities=22% Similarity=0.469 Sum_probs=29.2
Q ss_pred cccccccccccCCCCeEEecCCCeecHHHHHHHHHc
Q 029389 142 DVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMER 177 (194)
Q Consensus 142 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~ 177 (194)
..|.+|+++|..+.......|.-+||..|+..|+..
T Consensus 215 rvC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDREDSLPVFHGKCYPNWLTT 250 (288)
T ss_pred eecHHHHHHHhcccccchhhcccccccccccccccc
Confidence 389999999986555566666669999999999954
No 137
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.78 E-value=40 Score=25.18 Aligned_cols=45 Identities=18% Similarity=0.461 Sum_probs=32.4
Q ss_pred cccccccccccCC-----------CCeEEecCCCeecHHHHHHHHHcCCCCCcccc
Q 029389 142 DVCPTCLEEYTLE-----------NPKIVTQCRHHYHLSCIYEWMERSPTCPVCSK 186 (194)
Q Consensus 142 ~~C~ICle~~~~~-----------~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~ 186 (194)
..|--|+..|... ....-..|++.|+.+|=.-|-+.-..||-|..
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~~ 111 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCIH 111 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCCC
Confidence 4588888877532 11224579999999998777777778999963
No 138
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=36.61 E-value=23 Score=20.74 Aligned_cols=26 Identities=19% Similarity=0.660 Sum_probs=15.4
Q ss_pred cccccccccccCCC--------CeEEecCCCeec
Q 029389 142 DVCPTCLEEYTLEN--------PKIVTQCRHHYH 167 (194)
Q Consensus 142 ~~C~ICle~~~~~~--------~~~~l~C~H~FH 167 (194)
.+|+-|...|...+ .++-..|+|.|.
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 36888888776532 222335677774
No 139
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=36.09 E-value=28 Score=19.80 Aligned_cols=10 Identities=40% Similarity=0.959 Sum_probs=6.7
Q ss_pred cCCCCCcccc
Q 029389 177 RSPTCPVCSK 186 (194)
Q Consensus 177 ~~~tCPvCR~ 186 (194)
....||+|..
T Consensus 16 ~~~~CP~Cg~ 25 (33)
T cd00350 16 APWVCPVCGA 25 (33)
T ss_pred CCCcCcCCCC
Confidence 3447888865
No 140
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=34.91 E-value=37 Score=30.10 Aligned_cols=47 Identities=21% Similarity=0.448 Sum_probs=34.7
Q ss_pred CCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccc
Q 029389 140 DEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSK 186 (194)
Q Consensus 140 ~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~ 186 (194)
....|-.|.++.......+.-.|.+.||.+|=.--=+.-..||-|..
T Consensus 329 ~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 329 GSRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred CCcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcCC
Confidence 34459999888776666666779999999995543355567999964
No 141
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=32.72 E-value=30 Score=34.38 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=10.5
Q ss_pred CCCCCCccccccccccc
Q 029389 136 LGPEDEDVCPTCLEEYT 152 (194)
Q Consensus 136 ~~~~~~~~C~ICle~~~ 152 (194)
....+...|.||+..+.
T Consensus 600 ~~~TdPNqCiiC~rVlS 616 (958)
T KOG1074|consen 600 NKRTDPNQCIICLRVLS 616 (958)
T ss_pred cccCCccceeeeeeccc
Confidence 33445567888876654
No 142
>PRK11827 hypothetical protein; Provisional
Probab=32.55 E-value=16 Score=24.24 Aligned_cols=19 Identities=21% Similarity=0.615 Sum_probs=12.8
Q ss_pred HHHHcCCCCCcccccccCC
Q 029389 173 EWMERSPTCPVCSKVMVFD 191 (194)
Q Consensus 173 ~Wl~~~~tCPvCR~~v~~~ 191 (194)
+||..--.||+|+..+..+
T Consensus 3 ~~LLeILaCP~ckg~L~~~ 21 (60)
T PRK11827 3 HRLLEIIACPVCNGKLWYN 21 (60)
T ss_pred hHHHhheECCCCCCcCeEc
Confidence 4555556688888777654
No 143
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=32.54 E-value=50 Score=29.28 Aligned_cols=52 Identities=21% Similarity=0.498 Sum_probs=34.8
Q ss_pred CCCccccccccccc---------------CCCC-eEEecCCCeecHHHHHHHHHc---------CCCCCcccccccC
Q 029389 139 EDEDVCPTCLEEYT---------------LENP-KIVTQCRHHYHLSCIYEWMER---------SPTCPVCSKVMVF 190 (194)
Q Consensus 139 ~~~~~C~ICle~~~---------------~~~~-~~~l~C~H~FH~~CI~~Wl~~---------~~tCPvCR~~v~~ 190 (194)
..+.+|++|+..=. .+-+ ..-.||||+--..=..-|-+. +..||.|-..+..
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 44679999997621 1111 123589999888888888753 3469999876643
No 144
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=32.32 E-value=86 Score=20.53 Aligned_cols=46 Identities=20% Similarity=0.546 Sum_probs=32.1
Q ss_pred cccccccccccCCCCeEEecCC--CeecHHHHHHHHHcCCCCCcccccccC
Q 029389 142 DVCPTCLEEYTLENPKIVTQCR--HHYHLSCIYEWMERSPTCPVCSKVMVF 190 (194)
Q Consensus 142 ~~C~ICle~~~~~~~~~~l~C~--H~FH~~CI~~Wl~~~~tCPvCR~~v~~ 190 (194)
..|-.|-.++..+..-. .-|+ ..|+.+|...-| +..||-|.-.++.
T Consensus 6 pnCE~C~~dLp~~s~~A-~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEA-YICSFECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred CCccccCCCCCCCCCcc-eEEeEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 46777777776544222 3364 589999999977 5569999877653
No 145
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.07 E-value=35 Score=29.17 Aligned_cols=37 Identities=16% Similarity=0.254 Sum_probs=29.2
Q ss_pred CCCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHH
Q 029389 137 GPEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWME 176 (194)
Q Consensus 137 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~ 176 (194)
....-+.|..||..+. ..++.+=||+|.++||.+.+.
T Consensus 39 siK~FdcCsLtLqPc~---dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCR---DPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred ccCCcceeeeeccccc---CCccCCCCeeeeHHHHHHHHH
Confidence 3344568999999986 446678899999999999873
No 146
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=31.84 E-value=38 Score=21.01 Aligned_cols=37 Identities=19% Similarity=0.503 Sum_probs=18.9
Q ss_pred cccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCccccccc
Q 029389 144 CPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 144 C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
|..|-+.+..+. ..+..-+..||..| .+|-.|++.|.
T Consensus 1 C~~C~~~I~~~~-~~~~~~~~~~H~~C--------f~C~~C~~~l~ 37 (58)
T PF00412_consen 1 CARCGKPIYGTE-IVIKAMGKFWHPEC--------FKCSKCGKPLN 37 (58)
T ss_dssp BTTTSSBESSSS-EEEEETTEEEETTT--------SBETTTTCBTT
T ss_pred CCCCCCCccCcE-EEEEeCCcEEEccc--------cccCCCCCccC
Confidence 455666665322 22223566677655 24556655543
No 147
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.74 E-value=12 Score=28.91 Aligned_cols=52 Identities=21% Similarity=0.441 Sum_probs=30.0
Q ss_pred CCCCCCccccccccc-ccCCCCeEEecCCCeecHHHHHHHHHcCC----CCCccccc
Q 029389 136 LGPEDEDVCPTCLEE-YTLENPKIVTQCRHHYHLSCIYEWMERSP----TCPVCSKV 187 (194)
Q Consensus 136 ~~~~~~~~C~ICle~-~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~----tCPvCR~~ 187 (194)
....++.+|.||+.. |.++-.....-|.-.||..|--+.-.+++ .|-+|++.
T Consensus 60 aGv~ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 60 AGVGDDATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred cccCcCcchhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 566788999999965 44333333334455555555444333322 47788764
No 149
>PF14353 CpXC: CpXC protein
Probab=30.73 E-value=57 Score=24.16 Aligned_cols=46 Identities=22% Similarity=0.442 Sum_probs=24.2
Q ss_pred cccccccccccCCCCeEEecCCCeecHHHHHHHHHc---CCCCCcccccccC
Q 029389 142 DVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMER---SPTCPVCSKVMVF 190 (194)
Q Consensus 142 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~---~~tCPvCR~~v~~ 190 (194)
.+||-|...|.. .+.+.-.=.-..+=...-|.. ..+||.|.+.+..
T Consensus 2 itCP~C~~~~~~---~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 2 ITCPHCGHEFEF---EVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred cCCCCCCCeeEE---EEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceec
Confidence 478888888763 222222222333334444432 2368888876654
No 150
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=30.21 E-value=27 Score=25.14 Aligned_cols=33 Identities=15% Similarity=0.260 Sum_probs=22.3
Q ss_pred CCcccccccccccCCCCeEEe--cCCCeecHHHHHHH
Q 029389 140 DEDVCPTCLEEYTLENPKIVT--QCRHHYHLSCIYEW 174 (194)
Q Consensus 140 ~~~~C~ICle~~~~~~~~~~l--~C~H~FH~~CI~~W 174 (194)
....|.||..... -.+.-. .|...||..|...+
T Consensus 54 ~~~~C~iC~~~~G--~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 54 FKLKCSICGKSGG--ACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred cCCcCcCCCCCCc--eeEEcCCCCCCcCCCHHHHHHC
Confidence 4578999998732 222222 37789999998653
No 151
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=28.99 E-value=18 Score=20.01 Aligned_cols=11 Identities=55% Similarity=1.159 Sum_probs=5.8
Q ss_pred CCCcccccccC
Q 029389 180 TCPVCSKVMVF 190 (194)
Q Consensus 180 tCPvCR~~v~~ 190 (194)
.||+|...+..
T Consensus 1 ~CP~C~s~l~~ 11 (28)
T PF03119_consen 1 TCPVCGSKLVR 11 (28)
T ss_dssp B-TTT--BEEE
T ss_pred CcCCCCCEeEc
Confidence 48999888763
No 152
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=28.61 E-value=42 Score=20.94 Aligned_cols=35 Identities=17% Similarity=0.429 Sum_probs=25.4
Q ss_pred cccccccccccCCCC-eEEecCCCeecHHHHHHHHH
Q 029389 142 DVCPTCLEEYTLENP-KIVTQCRHHYHLSCIYEWME 176 (194)
Q Consensus 142 ~~C~ICle~~~~~~~-~~~l~C~H~FH~~CI~~Wl~ 176 (194)
..|.+|-..|..... ..--.||++|+..|....+.
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 578999988875332 22346999999999877654
No 153
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=28.55 E-value=27 Score=18.91 Aligned_cols=9 Identities=44% Similarity=1.243 Sum_probs=6.9
Q ss_pred CCCcccccc
Q 029389 180 TCPVCSKVM 188 (194)
Q Consensus 180 tCPvCR~~v 188 (194)
.||+|.+.|
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 588887766
No 154
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=28.48 E-value=34 Score=25.28 Aligned_cols=46 Identities=24% Similarity=0.659 Sum_probs=29.0
Q ss_pred CCcccccccccccC--CCCeEEecCCCeecHHHHHHHHHcCC--CCCcccc
Q 029389 140 DEDVCPTCLEEYTL--ENPKIVTQCRHHYHLSCIYEWMERSP--TCPVCSK 186 (194)
Q Consensus 140 ~~~~C~ICle~~~~--~~~~~~l~C~H~FH~~CI~~Wl~~~~--tCPvCR~ 186 (194)
.+..|.+|...|.. +....-..|+|.+|..|-.. ..... .|-+|.+
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 56799999998754 23455567999999998554 11111 3777754
No 155
>PLN02189 cellulose synthase
Probab=26.70 E-value=55 Score=33.37 Aligned_cols=49 Identities=27% Similarity=0.541 Sum_probs=33.7
Q ss_pred CCcccccccccccC---CCCeEEe-cCCCeecHHHHH-HHHHcCCCCCcccccc
Q 029389 140 DEDVCPTCLEEYTL---ENPKIVT-QCRHHYHLSCIY-EWMERSPTCPVCSKVM 188 (194)
Q Consensus 140 ~~~~C~ICle~~~~---~~~~~~l-~C~H~FH~~CI~-~Wl~~~~tCPvCR~~v 188 (194)
....|.||-+++.. ++.-+.- .|+--.|+.|.+ +.-+.++.||.|+...
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y 86 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRY 86 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCch
Confidence 34589999999863 3333322 477778999983 3335677899998754
No 156
>PRK01343 zinc-binding protein; Provisional
Probab=26.13 E-value=45 Score=21.85 Aligned_cols=11 Identities=36% Similarity=0.857 Sum_probs=6.1
Q ss_pred CCCCccccccc
Q 029389 179 PTCPVCSKVMV 189 (194)
Q Consensus 179 ~tCPvCR~~v~ 189 (194)
..||+|++.+.
T Consensus 10 ~~CP~C~k~~~ 20 (57)
T PRK01343 10 RPCPECGKPST 20 (57)
T ss_pred CcCCCCCCcCc
Confidence 34666666543
No 157
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=25.28 E-value=46 Score=21.01 Aligned_cols=23 Identities=30% Similarity=0.863 Sum_probs=13.9
Q ss_pred cCCCeecHHHHHHHHHcCCCCCcc
Q 029389 161 QCRHHYHLSCIYEWMERSPTCPVC 184 (194)
Q Consensus 161 ~C~H~FH~~CI~~Wl~~~~tCPvC 184 (194)
.|+|.|-.. |..-..+...||.|
T Consensus 33 ~Cgh~w~~~-v~~R~~~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEWKAS-VNDRTRRGKGCPYC 55 (55)
T ss_pred CCCCeeEcc-HhhhccCCCCCCCC
Confidence 467776543 33333566779987
No 158
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=24.27 E-value=34 Score=29.02 Aligned_cols=47 Identities=26% Similarity=0.556 Sum_probs=34.5
Q ss_pred CcccccccccccCCCCeEEecCCCeecHHHHHHHHHcC--CCCCc--cccccc
Q 029389 141 EDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERS--PTCPV--CSKVMV 189 (194)
Q Consensus 141 ~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~--~tCPv--CR~~v~ 189 (194)
+..|+|=+..+. .++....|+|.|-.+=|...|+.. ..||. |.+.+.
T Consensus 189 ~nrCpitl~p~~--~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~ 239 (275)
T COG5627 189 SNRCPITLNPDF--YPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEV 239 (275)
T ss_pred cccCCcccCcch--hHHHHhhhcccccHHHHHHHhcCCceeecchhhcchhee
Confidence 568999887765 466667899999999999999744 45664 544433
No 159
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=23.83 E-value=48 Score=22.74 Aligned_cols=33 Identities=15% Similarity=0.330 Sum_probs=21.2
Q ss_pred CcccccccccccCCCCeEEecCCCeecHHHHHH
Q 029389 141 EDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYE 173 (194)
Q Consensus 141 ~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~ 173 (194)
...|.+|......--.-..-.|.-.||..|...
T Consensus 36 ~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 36 KLKCSICKKKGGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCCcCCCCCCCeEEEEeCCCCCcEEChHHHcc
Confidence 468999997632111112235889999999765
No 160
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=23.31 E-value=23 Score=22.48 Aligned_cols=19 Identities=16% Similarity=0.766 Sum_probs=14.7
Q ss_pred CeEEe-cCCCeecHHHHHHH
Q 029389 156 PKIVT-QCRHHYHLSCIYEW 174 (194)
Q Consensus 156 ~~~~l-~C~H~FH~~CI~~W 174 (194)
..+.- .|+|.|+..|-.+|
T Consensus 39 ~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 39 NRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CeeECCCCCCeECCCCCCcC
Confidence 34444 68999999998888
No 161
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=23.02 E-value=1.1e+02 Score=22.35 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=18.4
Q ss_pred CCeecHHHHHHHHHc---------CCCCCcccc
Q 029389 163 RHHYHLSCIYEWMER---------SPTCPVCSK 186 (194)
Q Consensus 163 ~H~FH~~CI~~Wl~~---------~~tCPvCR~ 186 (194)
.=.|+..||..+... +-.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 678999999888732 235999985
No 162
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.86 E-value=37 Score=27.19 Aligned_cols=16 Identities=44% Similarity=0.906 Sum_probs=12.6
Q ss_pred CCCCCcccccccCCCC
Q 029389 178 SPTCPVCSKVMVFDET 193 (194)
Q Consensus 178 ~~tCPvCR~~v~~~~~ 193 (194)
...||+|.|.|+.||.
T Consensus 138 g~KCPvC~K~V~sDd~ 153 (205)
T KOG0801|consen 138 GMKCPVCHKVVPSDDA 153 (205)
T ss_pred CccCCccccccCCCcc
Confidence 3579999999888763
No 163
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=22.67 E-value=53 Score=21.90 Aligned_cols=13 Identities=31% Similarity=0.920 Sum_probs=9.6
Q ss_pred CCCCCcccccccC
Q 029389 178 SPTCPVCSKVMVF 190 (194)
Q Consensus 178 ~~tCPvCR~~v~~ 190 (194)
...||.|++.+..
T Consensus 6 ~v~CP~C~k~~~w 18 (62)
T PRK00418 6 TVNCPTCGKPVEW 18 (62)
T ss_pred cccCCCCCCcccc
Confidence 3469999988754
No 164
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=21.94 E-value=53 Score=21.76 Aligned_cols=16 Identities=38% Similarity=0.669 Sum_probs=12.8
Q ss_pred CCCCCcccccccCCCC
Q 029389 178 SPTCPVCSKVMVFDET 193 (194)
Q Consensus 178 ~~tCPvCR~~v~~~~~ 193 (194)
+..|++|.+.++.|+-
T Consensus 8 H~HC~VCg~aIp~de~ 23 (64)
T COG4068 8 HRHCVVCGKAIPPDEQ 23 (64)
T ss_pred CccccccCCcCCCccc
Confidence 4569999999988763
No 165
>PF02444 HEV_ORF1: Hepatitis E virus ORF-2 (Putative capsid protein); InterPro: IPR003384 The Hepatitis E virus(HEV) genome is a single-stranded, positive-sense RNA molecule of approximately 7.5 kb []. Three open reading frames (ORF) were identified within the HEV genome: ORF1 encodes nonstructural proteins, ORF2 encodes the putative structural protein(s), and ORF3 encodes a protein of unknown function. ORF2 contains a consensus signal peptide sequence at its amino terminus and a capsid-like region with a high content of basic amino acids similar to that seen with other virus capsid proteins [].; GO: 0030430 host cell cytoplasm
Probab=21.61 E-value=87 Score=22.85 Aligned_cols=19 Identities=26% Similarity=0.670 Sum_probs=11.3
Q ss_pred CcccCcchhhhhhhhhhcc
Q 029389 26 GCRCPNCRLHTLLNKYTAL 44 (194)
Q Consensus 26 ~c~c~~~~~~~~~~~~~~~ 44 (194)
.|+|+-|.-|.-.+..++.
T Consensus 16 scfclccprhrp~srla~~ 34 (114)
T PF02444_consen 16 SCFCLCCPRHRPVSRLAAV 34 (114)
T ss_pred cceeeecCCCCcHHHHHHH
Confidence 3777777766555544433
No 166
>PLN02436 cellulose synthase A
Probab=20.54 E-value=83 Score=32.24 Aligned_cols=49 Identities=22% Similarity=0.513 Sum_probs=33.3
Q ss_pred CCcccccccccccC---CCCeEEe-cCCCeecHHHHHH-HHHcCCCCCcccccc
Q 029389 140 DEDVCPTCLEEYTL---ENPKIVT-QCRHHYHLSCIYE-WMERSPTCPVCSKVM 188 (194)
Q Consensus 140 ~~~~C~ICle~~~~---~~~~~~l-~C~H~FH~~CI~~-Wl~~~~tCPvCR~~v 188 (194)
....|.||-+++.. ++.-+.- .|+--.|..|.+- .-+.++.||.|+...
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y 88 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCch
Confidence 34589999999753 3333322 4777789999832 225567899998754
No 167
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=20.48 E-value=92 Score=31.93 Aligned_cols=49 Identities=22% Similarity=0.563 Sum_probs=34.1
Q ss_pred CCcccccccccccC---CCCeE-EecCCCeecHHHH-HHHHHcCCCCCcccccc
Q 029389 140 DEDVCPTCLEEYTL---ENPKI-VTQCRHHYHLSCI-YEWMERSPTCPVCSKVM 188 (194)
Q Consensus 140 ~~~~C~ICle~~~~---~~~~~-~l~C~H~FH~~CI-~~Wl~~~~tCPvCR~~v 188 (194)
....|.||-+++.. ++.-+ .-.|+--.|+.|- ++.-+.++.||.|+...
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrY 69 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKY 69 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCch
Confidence 34589999999764 33322 2357777899998 34446678999998653
No 168
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.19 E-value=54 Score=23.68 Aligned_cols=12 Identities=17% Similarity=0.800 Sum_probs=10.7
Q ss_pred eecHHHHHHHHH
Q 029389 165 HYHLSCIYEWME 176 (194)
Q Consensus 165 ~FH~~CI~~Wl~ 176 (194)
.||+.|+..|.+
T Consensus 42 gFCRNCLs~Wy~ 53 (104)
T COG3492 42 GFCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHHH
Confidence 499999999995
Done!