Query 029389
Match_columns 194
No_of_seqs 256 out of 1340
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 19:55:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029389.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029389hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 8E-17 2.7E-21 114.6 5.8 70 121-190 15-89 (91)
2 1iym_A EL5; ring-H2 finger, ub 99.6 1.7E-16 5.8E-21 102.1 4.1 52 139-190 3-55 (55)
3 1x4j_A Ring finger protein 38; 99.6 1.3E-16 4.4E-21 109.2 3.8 54 138-191 20-73 (75)
4 2kiz_A E3 ubiquitin-protein li 99.6 8.5E-16 2.9E-20 103.3 6.8 55 137-191 10-64 (69)
5 2ep4_A Ring finger protein 24; 99.6 1.2E-15 4.1E-20 103.9 6.1 53 138-190 12-64 (74)
6 2ect_A Ring finger protein 126 99.6 8.7E-16 3E-20 105.6 4.8 56 137-192 11-66 (78)
7 2ecl_A Ring-box protein 2; RNF 99.6 1.4E-15 4.8E-20 106.0 4.5 53 139-191 13-77 (81)
8 2ecm_A Ring finger and CHY zin 99.6 2.8E-15 9.6E-20 96.2 4.9 51 139-189 3-54 (55)
9 3ng2_A RNF4, snurf, ring finge 99.5 6.4E-15 2.2E-19 99.2 4.2 55 138-192 7-65 (71)
10 3dpl_R Ring-box protein 1; ubi 99.5 8.7E-15 3E-19 107.3 4.6 54 138-191 34-102 (106)
11 2ea6_A Ring finger protein 4; 99.5 1.5E-14 5.2E-19 96.6 5.1 54 137-190 11-68 (69)
12 1v87_A Deltex protein 2; ring- 99.5 9.3E-15 3.2E-19 107.4 4.2 51 140-190 24-94 (114)
13 2xeu_A Ring finger protein 4; 99.5 1.3E-14 4.3E-19 95.5 4.1 53 140-192 2-58 (64)
14 2d8s_A Cellular modulator of i 99.5 2.6E-14 9E-19 99.7 5.1 56 136-192 10-72 (80)
15 2djb_A Polycomb group ring fin 99.5 3.4E-14 1.2E-18 96.4 5.4 54 137-192 11-64 (72)
16 4a0k_B E3 ubiquitin-protein li 99.5 2.6E-15 8.8E-20 112.0 -1.2 54 138-191 45-113 (117)
17 1chc_A Equine herpes virus-1 r 99.5 3.6E-14 1.2E-18 94.8 3.9 49 139-189 3-51 (68)
18 2ecn_A Ring finger protein 141 99.5 3E-14 1E-18 95.8 3.4 52 137-192 11-62 (70)
19 2d8t_A Dactylidin, ring finger 99.4 5.2E-14 1.8E-18 95.2 3.8 50 138-190 12-61 (71)
20 2ct2_A Tripartite motif protei 99.4 1.5E-13 5E-18 96.0 6.1 56 136-191 10-69 (88)
21 2ysl_A Tripartite motif-contai 99.4 2.4E-13 8.3E-18 91.9 5.4 53 137-192 16-71 (73)
22 2ecy_A TNF receptor-associated 99.4 2.3E-13 8E-18 90.6 4.3 52 138-192 12-64 (66)
23 2yur_A Retinoblastoma-binding 99.4 3.2E-13 1.1E-17 92.2 4.8 53 137-192 11-66 (74)
24 2csy_A Zinc finger protein 183 99.4 4E-13 1.4E-17 93.0 5.3 49 138-189 12-60 (81)
25 4ayc_A E3 ubiquitin-protein li 99.3 2.9E-13 9.9E-18 103.0 2.9 49 139-190 51-99 (138)
26 1t1h_A Gspef-atpub14, armadill 99.3 1.1E-12 3.8E-17 89.9 5.5 52 138-192 5-57 (78)
27 3lrq_A E3 ubiquitin-protein li 99.3 3.3E-13 1.1E-17 97.4 2.7 52 139-192 20-72 (100)
28 2ecw_A Tripartite motif-contai 99.3 1.3E-12 4.5E-17 90.2 5.4 52 138-192 16-73 (85)
29 2ct0_A Non-SMC element 1 homol 99.3 9.5E-13 3.3E-17 90.5 4.6 56 136-193 10-67 (74)
30 4ap4_A E3 ubiquitin ligase RNF 99.3 6.8E-13 2.3E-17 98.8 4.1 53 139-191 5-61 (133)
31 2ysj_A Tripartite motif-contai 99.3 2.5E-12 8.4E-17 84.7 5.4 45 137-184 16-63 (63)
32 2egp_A Tripartite motif-contai 99.3 4.3E-13 1.5E-17 91.9 1.3 52 137-191 8-66 (79)
33 2ecv_A Tripartite motif-contai 99.3 1.7E-12 5.8E-17 89.7 4.3 52 138-192 16-73 (85)
34 1g25_A CDK-activating kinase a 99.3 2E-12 6.9E-17 85.7 4.5 53 140-192 2-57 (65)
35 2y43_A E3 ubiquitin-protein li 99.3 8.5E-13 2.9E-17 94.6 2.7 49 140-190 21-69 (99)
36 2ckl_A Polycomb group ring fin 99.3 2.5E-12 8.4E-17 93.7 4.2 51 139-191 13-63 (108)
37 3ztg_A E3 ubiquitin-protein li 99.3 7E-12 2.4E-16 88.5 6.4 51 136-189 8-61 (92)
38 4ap4_A E3 ubiquitin ligase RNF 99.3 2.7E-12 9.2E-17 95.5 4.1 54 139-192 70-127 (133)
39 2ecj_A Tripartite motif-contai 99.2 3.9E-12 1.3E-16 82.0 3.5 44 138-184 12-58 (58)
40 3fl2_A E3 ubiquitin-protein li 99.2 6.4E-12 2.2E-16 93.6 3.8 49 139-190 50-99 (124)
41 2ckl_B Ubiquitin ligase protei 99.2 6.6E-12 2.2E-16 98.0 2.9 49 139-189 52-101 (165)
42 3hct_A TNF receptor-associated 99.2 1.3E-11 4.4E-16 91.4 3.9 52 137-191 14-66 (118)
43 1jm7_A BRCA1, breast cancer ty 99.2 9.1E-12 3.1E-16 90.7 2.8 50 140-192 20-72 (112)
44 1rmd_A RAG1; V(D)J recombinati 99.1 1.9E-11 6.3E-16 90.0 3.4 50 140-192 22-72 (116)
45 1z6u_A NP95-like ring finger p 99.1 2.8E-11 9.6E-16 93.5 4.1 50 139-191 76-126 (150)
46 3l11_A E3 ubiquitin-protein li 99.1 6.2E-12 2.1E-16 92.4 0.1 50 137-189 11-61 (115)
47 2kr4_A Ubiquitin conjugation f 99.1 7.5E-11 2.6E-15 82.7 5.0 51 138-191 11-61 (85)
48 1e4u_A Transcriptional repress 99.1 6.4E-11 2.2E-15 82.0 4.3 54 138-191 8-63 (78)
49 3knv_A TNF receptor-associated 99.1 3.9E-11 1.3E-15 91.8 3.0 51 138-191 28-79 (141)
50 2vje_A E3 ubiquitin-protein li 99.1 8.6E-11 2.9E-15 78.1 4.0 48 139-189 6-56 (64)
51 1wgm_A Ubiquitin conjugation f 99.1 1.6E-10 5.4E-15 83.3 5.3 52 138-192 19-71 (98)
52 2kre_A Ubiquitin conjugation f 99.1 1.5E-10 5E-15 83.7 5.0 52 138-192 26-77 (100)
53 1bor_A Transcription factor PM 99.0 4.9E-11 1.7E-15 77.1 1.1 48 139-192 4-51 (56)
54 2vje_B MDM4 protein; proto-onc 99.0 2.4E-10 8.2E-15 75.7 3.6 48 139-189 5-55 (63)
55 1jm7_B BARD1, BRCA1-associated 99.0 7.5E-11 2.6E-15 87.0 0.8 50 139-192 20-69 (117)
56 2y1n_A E3 ubiquitin-protein li 98.9 5.7E-10 1.9E-14 98.2 5.4 47 141-190 332-379 (389)
57 4ic3_A E3 ubiquitin-protein li 98.9 2.5E-10 8.7E-15 77.8 1.7 43 140-189 23-66 (74)
58 2yu4_A E3 SUMO-protein ligase 98.9 7.5E-10 2.6E-14 78.9 4.1 47 138-187 4-59 (94)
59 3hcs_A TNF receptor-associated 98.9 6.3E-10 2.2E-14 86.9 3.9 52 137-191 14-66 (170)
60 1vyx_A ORF K3, K3RING; zinc-bi 98.8 2.7E-09 9.2E-14 70.2 4.3 50 138-190 3-59 (60)
61 2c2l_A CHIP, carboxy terminus 98.8 3.2E-09 1.1E-13 88.0 4.5 53 136-191 203-256 (281)
62 3k1l_B Fancl; UBC, ring, RWD, 98.8 1.5E-09 5.1E-14 93.9 1.4 53 138-190 305-373 (381)
63 1wim_A KIAA0161 protein; ring 98.7 5.1E-09 1.8E-13 74.2 3.2 49 139-187 3-61 (94)
64 2ecg_A Baculoviral IAP repeat- 98.7 2.9E-09 9.9E-14 72.5 1.3 44 140-190 24-68 (75)
65 2ea5_A Cell growth regulator w 98.6 1.4E-08 4.7E-13 68.2 3.3 45 138-189 12-57 (68)
66 2f42_A STIP1 homology and U-bo 98.6 2.2E-08 7.6E-13 79.5 4.9 53 136-191 101-154 (179)
67 3htk_C E3 SUMO-protein ligase 98.6 1.3E-08 4.6E-13 85.0 3.0 52 138-191 178-233 (267)
68 2yho_A E3 ubiquitin-protein li 98.6 7.8E-09 2.7E-13 71.4 1.1 43 140-189 17-60 (79)
69 2bay_A PRE-mRNA splicing facto 98.5 4.8E-08 1.6E-12 64.3 3.2 48 142-192 4-52 (61)
70 3t6p_A Baculoviral IAP repeat- 98.4 7.7E-08 2.6E-12 83.6 1.6 44 139-189 293-337 (345)
71 3vk6_A E3 ubiquitin-protein li 98.1 1.8E-06 6.2E-11 61.9 3.7 45 143-189 3-48 (101)
72 3nw0_A Non-structural maintena 98.0 4E-06 1.4E-10 69.2 3.4 52 139-192 178-231 (238)
73 2ko5_A Ring finger protein Z; 96.3 0.0012 4.1E-08 46.7 1.6 51 136-191 23-74 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 95.7 0.0062 2.1E-07 42.8 2.7 35 140-174 2-36 (101)
75 2lri_C Autoimmune regulator; Z 93.2 0.06 2.1E-06 35.4 2.9 46 139-187 10-59 (66)
76 2l5u_A Chromodomain-helicase-D 88.4 0.21 7.3E-06 32.0 1.9 47 138-187 8-58 (61)
77 1f62_A Transcription factor WS 87.3 0.3 1E-05 29.8 2.0 44 143-186 2-49 (51)
78 2ysm_A Myeloid/lymphoid or mix 85.8 0.23 7.9E-06 35.4 1.0 39 138-176 4-42 (111)
79 2k16_A Transcription initiatio 84.7 0.21 7E-06 33.2 0.3 51 139-189 16-70 (75)
80 1fp0_A KAP-1 corepressor; PHD 82.7 0.58 2E-05 32.4 1.9 53 137-192 21-77 (88)
81 1mm2_A MI2-beta; PHD, zinc fin 82.6 0.21 7.2E-06 32.0 -0.4 47 139-188 7-57 (61)
82 1we9_A PHD finger family prote 82.2 0.29 1E-05 31.4 0.2 50 138-187 3-58 (64)
83 1wil_A KIAA1045 protein; ring 82.1 1.1 3.8E-05 30.9 3.1 37 137-174 11-47 (89)
84 2yql_A PHD finger protein 21A; 81.5 0.14 4.8E-06 32.2 -1.5 46 138-186 6-55 (56)
85 3m62_A Ubiquitin conjugation f 81.5 1.2 4E-05 43.3 4.1 51 138-191 888-939 (968)
86 2puy_A PHD finger protein 21A; 81.1 0.13 4.3E-06 32.8 -1.9 48 139-189 3-54 (60)
87 3i2d_A E3 SUMO-protein ligase 81.0 1.3 4.6E-05 38.4 4.0 50 141-192 249-302 (371)
88 4fo9_A E3 SUMO-protein ligase 79.7 1.6 5.4E-05 37.8 4.0 50 141-192 215-268 (360)
89 2yt5_A Metal-response element- 78.9 1 3.6E-05 28.8 2.1 51 138-188 3-62 (66)
90 1xwh_A Autoimmune regulator; P 77.8 0.38 1.3E-05 31.2 -0.4 47 138-187 5-55 (66)
91 3v43_A Histone acetyltransfera 76.8 4.5 0.00015 28.7 5.1 33 140-172 4-42 (112)
92 2e6r_A Jumonji/ARID domain-con 72.7 0.26 8.9E-06 34.3 -2.4 50 137-186 12-65 (92)
93 2lbm_A Transcriptional regulat 71.6 4.5 0.00015 30.3 4.1 47 137-186 59-116 (142)
94 2vpb_A Hpygo1, pygopus homolog 70.4 4.1 0.00014 26.3 3.3 35 138-172 5-41 (65)
95 2ku3_A Bromodomain-containing 70.2 5.5 0.00019 26.1 3.9 50 137-186 12-65 (71)
96 3v43_A Histone acetyltransfera 69.8 1 3.5E-05 32.2 0.2 46 141-186 61-111 (112)
97 2l43_A N-teminal domain from h 69.1 0.79 2.7E-05 31.5 -0.5 53 138-190 22-78 (88)
98 4gne_A Histone-lysine N-methyl 68.4 1.9 6.4E-05 30.8 1.4 44 136-185 10-60 (107)
99 2e6s_A E3 ubiquitin-protein li 68.3 1 3.5E-05 30.2 -0.1 45 142-186 27-76 (77)
100 3asl_A E3 ubiquitin-protein li 65.9 0.88 3E-05 29.9 -0.8 45 143-187 20-69 (70)
101 3shb_A E3 ubiquitin-protein li 62.9 0.72 2.5E-05 31.0 -1.7 44 143-186 28-76 (77)
102 2lv9_A Histone-lysine N-methyl 61.7 2.2 7.6E-05 29.7 0.7 46 140-186 27-75 (98)
103 1weo_A Cellulose synthase, cat 61.2 13 0.00043 25.8 4.4 50 140-189 15-69 (93)
104 2kgg_A Histone demethylase jar 60.4 8.6 0.00029 23.3 3.2 44 142-185 3-52 (52)
105 1z60_A TFIIH basal transcripti 59.3 3.2 0.00011 26.5 1.0 43 142-184 16-58 (59)
106 1wep_A PHF8; structural genomi 56.9 9.9 0.00034 25.1 3.3 47 140-187 11-63 (79)
107 1wev_A Riken cDNA 1110020M19; 56.8 2.9 9.9E-05 28.6 0.5 50 140-189 15-74 (88)
108 3ql9_A Transcriptional regulat 54.8 12 0.0004 27.6 3.6 48 136-186 52-110 (129)
109 2kwj_A Zinc finger protein DPF 54.5 0.67 2.3E-05 33.3 -3.2 48 142-189 59-110 (114)
110 1wem_A Death associated transc 54.2 5.1 0.00018 26.3 1.4 46 141-187 16-70 (76)
111 2cs3_A Protein C14ORF4, MY039 53.4 38 0.0013 23.0 5.6 39 139-177 13-52 (93)
112 1wen_A Inhibitor of growth fam 52.0 4.9 0.00017 26.3 1.0 46 139-188 14-66 (71)
113 3ask_A E3 ubiquitin-protein li 51.7 3.6 0.00012 33.2 0.4 46 142-187 175-225 (226)
114 1weu_A Inhibitor of growth fam 50.3 5.6 0.00019 27.5 1.2 46 139-188 34-86 (91)
115 3mjh_B Early endosome antigen 49.1 4.1 0.00014 23.0 0.3 13 140-152 4-16 (34)
116 2ysm_A Myeloid/lymphoid or mix 47.2 2.6 9E-05 29.7 -1.0 45 143-187 56-104 (111)
117 2xb1_A Pygopus homolog 2, B-ce 46.3 9.3 0.00032 26.8 1.8 48 141-188 3-62 (105)
118 1zbd_B Rabphilin-3A; G protein 43.9 8.9 0.0003 28.3 1.5 34 139-172 53-88 (134)
119 1z2q_A LM5-1; membrane protein 43.5 19 0.00065 24.0 3.0 36 139-174 19-55 (84)
120 1wfk_A Zinc finger, FYVE domai 43.2 17 0.0006 24.6 2.8 37 138-174 6-43 (88)
121 2dj7_A Actin-binding LIM prote 42.8 21 0.00071 23.2 3.1 40 140-189 14-53 (80)
122 2zet_C Melanophilin; complex, 42.1 13 0.00045 28.0 2.2 33 139-171 66-100 (153)
123 2ri7_A Nucleosome-remodeling f 41.3 7.6 0.00026 29.3 0.8 47 139-186 6-58 (174)
124 2cu8_A Cysteine-rich protein 2 40.5 20 0.00069 22.7 2.7 39 141-189 9-47 (76)
125 2yw8_A RUN and FYVE domain-con 40.4 18 0.00062 24.0 2.5 36 139-174 17-53 (82)
126 1iml_A CRIP, cysteine rich int 40.0 12 0.0004 23.9 1.5 44 140-187 26-70 (76)
127 2co8_A NEDD9 interacting prote 39.7 26 0.00091 22.7 3.3 40 140-189 14-53 (82)
128 2d8v_A Zinc finger FYVE domain 39.6 18 0.00062 23.5 2.3 32 138-173 5-37 (67)
129 3t7l_A Zinc finger FYVE domain 39.3 19 0.00063 24.4 2.4 36 140-175 19-55 (90)
130 1g47_A Pinch protein; LIM doma 38.9 33 0.0011 21.6 3.6 41 140-189 10-50 (77)
131 2vnf_A ING 4, P29ING4, inhibit 37.9 3.8 0.00013 25.9 -1.2 40 140-186 9-58 (60)
132 2o35_A Hypothetical protein DU 37.4 14 0.00048 26.0 1.6 12 165-176 42-53 (105)
133 3fyb_A Protein of unknown func 37.3 14 0.00049 26.0 1.6 12 165-176 41-52 (104)
134 2pk7_A Uncharacterized protein 37.2 7.4 0.00025 25.5 0.1 19 173-191 3-21 (69)
135 1x4u_A Zinc finger, FYVE domai 37.1 22 0.00074 23.7 2.5 36 139-174 12-48 (84)
136 2jne_A Hypothetical protein YF 36.6 10 0.00035 26.7 0.7 39 142-189 33-72 (101)
137 3vhs_A ATPase wrnip1; zinc fin 36.1 9.4 0.00032 20.2 0.4 10 180-189 8-17 (29)
138 1joc_A EEA1, early endosomal a 35.7 22 0.00074 25.7 2.4 35 140-174 68-103 (125)
139 1vfy_A Phosphatidylinositol-3- 35.6 23 0.0008 22.9 2.4 32 142-173 12-44 (73)
140 2jvx_A NF-kappa-B essential mo 35.2 7.9 0.00027 20.9 -0.0 12 179-190 4-15 (28)
141 3c6w_A P28ING5, inhibitor of g 34.2 4.9 0.00017 25.3 -1.2 43 140-186 8-57 (59)
142 1x61_A Thyroid receptor intera 33.8 49 0.0017 20.4 3.8 10 143-152 7-16 (72)
143 1x64_A Alpha-actinin-2 associa 33.4 62 0.0021 21.1 4.4 38 141-189 25-62 (89)
144 1y02_A CARP2, FYVE-ring finger 33.4 3.8 0.00013 29.8 -2.0 47 139-185 17-64 (120)
145 1x63_A Skeletal muscle LIM-pro 33.1 43 0.0015 21.4 3.4 40 141-189 15-54 (82)
146 2dar_A PDZ and LIM domain prot 32.9 31 0.0011 22.7 2.8 39 140-189 24-62 (90)
147 1zfo_A LAsp-1; LIM domain, zin 30.7 14 0.00046 20.0 0.5 27 142-170 4-30 (31)
148 1x4l_A Skeletal muscle LIM-pro 30.1 53 0.0018 20.3 3.4 40 141-189 5-46 (72)
149 2gmg_A Hypothetical protein PF 29.9 9.8 0.00034 27.0 -0.3 29 157-190 68-96 (105)
150 1wyh_A SLIM 2, skeletal muscle 29.6 51 0.0018 20.3 3.3 39 142-189 6-44 (72)
151 2jny_A Uncharacterized BCR; st 29.0 6.8 0.00023 25.5 -1.1 17 174-190 6-22 (67)
152 2kpi_A Uncharacterized protein 28.9 4.1 0.00014 25.6 -2.2 9 180-188 12-20 (56)
153 1x4k_A Skeletal muscle LIM-pro 28.5 48 0.0016 20.5 3.0 39 142-189 6-44 (72)
154 1x62_A C-terminal LIM domain p 28.1 46 0.0016 21.2 2.9 38 140-188 14-51 (79)
155 3a1b_A DNA (cytosine-5)-methyl 27.8 38 0.0013 25.7 2.7 38 136-177 74-114 (159)
156 1dvp_A HRS, hepatocyte growth 27.7 27 0.00093 27.3 2.0 34 141-174 161-195 (220)
157 3f6q_B LIM and senescent cell 26.3 36 0.0012 20.9 2.1 41 140-189 10-50 (72)
158 3zyq_A Hepatocyte growth facto 25.7 31 0.0011 27.3 2.0 35 141-175 164-199 (226)
159 1x68_A FHL5 protein; four-and- 25.7 59 0.002 20.4 3.1 41 141-189 5-46 (76)
160 2a20_A Regulating synaptic mem 24.8 49 0.0017 21.0 2.3 50 137-186 5-59 (62)
161 2pv0_B DNA (cytosine-5)-methyl 24.6 60 0.0021 28.1 3.7 36 137-175 89-126 (386)
162 2l3k_A Rhombotin-2, linker, LI 24.0 40 0.0014 23.6 2.1 37 139-176 34-70 (123)
163 2d8x_A Protein pinch; LIM doma 23.3 46 0.0016 20.5 2.1 38 141-189 5-42 (70)
164 2cor_A Pinch protein; LIM doma 23.0 71 0.0024 20.4 3.1 38 141-189 15-52 (79)
165 2xjy_A Rhombotin-2; oncoprotei 22.6 79 0.0027 22.0 3.5 10 142-151 30-39 (131)
166 1wew_A DNA-binding family prot 22.5 66 0.0023 20.9 2.8 48 140-188 15-73 (78)
167 1wd2_A Ariadne-1 protein homol 21.8 25 0.00085 22.1 0.5 16 177-192 5-20 (60)
168 3o70_A PHD finger protein 13; 21.4 39 0.0013 21.6 1.5 47 138-186 16-66 (68)
169 1a7i_A QCRP2 (LIM1); LIM domai 21.0 34 0.0012 21.9 1.1 39 141-189 7-45 (81)
170 2d8z_A Four and A half LIM dom 20.7 1E+02 0.0036 18.7 3.5 36 142-188 6-41 (70)
171 2jr6_A UPF0434 protein NMA0874 20.5 7.3 0.00025 25.4 -2.3 9 180-188 28-36 (68)
172 2cup_A Skeletal muscle LIM-pro 20.3 1.2E+02 0.004 20.0 3.9 47 140-190 32-78 (101)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.66 E-value=8e-17 Score=114.61 Aligned_cols=70 Identities=26% Similarity=0.518 Sum_probs=56.2
Q ss_pred hhhhhhhhccCCCcc-----CCCCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccccccC
Q 029389 121 KLERLDLLLKSPLRK-----LGPEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVF 190 (194)
Q Consensus 121 k~~~~~s~~~~~~~~-----~~~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~ 190 (194)
++++.+.+..++... ...+++..|+||++.|..++..+.++|+|.||..||..|++.+.+||+||+.+..
T Consensus 15 ~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 15 PPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp CCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 445555555555433 3345677899999999988888889999999999999999999999999998864
No 2
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.63 E-value=1.7e-16 Score=102.08 Aligned_cols=52 Identities=29% Similarity=0.724 Sum_probs=46.7
Q ss_pred CCCcccccccccccCCCCeEEec-CCCeecHHHHHHHHHcCCCCCcccccccC
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQ-CRHHYHLSCIYEWMERSPTCPVCSKVMVF 190 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~-C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~ 190 (194)
+++.+|+||++.|..++....++ |+|.||..||.+|++++.+||+||+.+.+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~v 55 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVV 55 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSCC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeEC
Confidence 56789999999999877778887 99999999999999999999999998753
No 3
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.3e-16 Score=109.22 Aligned_cols=54 Identities=22% Similarity=0.695 Sum_probs=48.4
Q ss_pred CCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccccccCC
Q 029389 138 PEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVFD 191 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~~ 191 (194)
..++..|+||++.|..++.++.++|+|.||..||.+|++.+.+||+||+.+...
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 456778999999999888888899999999999999999999999999988653
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=8.5e-16 Score=103.29 Aligned_cols=55 Identities=22% Similarity=0.591 Sum_probs=48.6
Q ss_pred CCCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccccccCC
Q 029389 137 GPEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVFD 191 (194)
Q Consensus 137 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~~ 191 (194)
..+.+..|+||++.|..+...+.++|+|.||..||.+|++.+.+||+||+.+...
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 3455678999999998777888899999999999999999999999999988654
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.2e-15 Score=103.91 Aligned_cols=53 Identities=25% Similarity=0.791 Sum_probs=47.6
Q ss_pred CCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccccccC
Q 029389 138 PEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVF 190 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~ 190 (194)
..++..|+||++.|.......+++|+|.||..||.+|++.+.+||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 35567999999999988888889999999999999999999999999998754
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.59 E-value=8.7e-16 Score=105.62 Aligned_cols=56 Identities=34% Similarity=0.759 Sum_probs=49.4
Q ss_pred CCCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccccccCCC
Q 029389 137 GPEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVFDE 192 (194)
Q Consensus 137 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~~~ 192 (194)
...++..|+||++.|.......+++|+|.||..||.+|++.+.+||+||+.+..++
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence 34567899999999998778888999999999999999999999999999987654
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.4e-15 Score=106.01 Aligned_cols=53 Identities=26% Similarity=0.697 Sum_probs=42.4
Q ss_pred CCCcccccccccccC-----------CCCeEEe-cCCCeecHHHHHHHHHcCCCCCcccccccCC
Q 029389 139 EDEDVCPTCLEEYTL-----------ENPKIVT-QCRHHYHLSCIYEWMERSPTCPVCSKVMVFD 191 (194)
Q Consensus 139 ~~~~~C~ICle~~~~-----------~~~~~~l-~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~~ 191 (194)
.++++|+||++.|.. ++..+.+ +|+|.||..||.+||+++.+||+||+.+.+.
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 356678888888853 3334445 5999999999999999999999999998754
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.56 E-value=2.8e-15 Score=96.18 Aligned_cols=51 Identities=29% Similarity=0.607 Sum_probs=44.6
Q ss_pred CCCcccccccccccC-CCCeEEecCCCeecHHHHHHHHHcCCCCCccccccc
Q 029389 139 EDEDVCPTCLEEYTL-ENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 139 ~~~~~C~ICle~~~~-~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
.++..|+||++.|.. ++..+.++|+|.||..||.+|++.+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 456789999999964 346778899999999999999998999999999874
No 9
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.52 E-value=6.4e-15 Score=99.15 Aligned_cols=55 Identities=25% Similarity=0.696 Sum_probs=47.1
Q ss_pred CCCCcccccccccccC----CCCeEEecCCCeecHHHHHHHHHcCCCCCcccccccCCC
Q 029389 138 PEDEDVCPTCLEEYTL----ENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVFDE 192 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~----~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~~~ 192 (194)
.+++..|+||++.|.. +...+.++|+|.||..||.+|++.+.+||+||+.+..++
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 3567899999999874 245578899999999999999999999999999987654
No 10
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.51 E-value=8.7e-15 Score=107.33 Aligned_cols=54 Identities=22% Similarity=0.522 Sum_probs=45.6
Q ss_pred CCCCcccccccccccCC---------------CCeEEecCCCeecHHHHHHHHHcCCCCCcccccccCC
Q 029389 138 PEDEDVCPTCLEEYTLE---------------NPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVFD 191 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~---------------~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~~ 191 (194)
..+++.|+||++.|... ..++.++|+|.||..||.+||+++.+||+||+++.+.
T Consensus 34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~ 102 (106)
T 3dpl_R 34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ 102 (106)
T ss_dssp SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCEE
T ss_pred CCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcceee
Confidence 34578899999999743 2367789999999999999999999999999987654
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.5e-14 Score=96.57 Aligned_cols=54 Identities=26% Similarity=0.697 Sum_probs=45.5
Q ss_pred CCCCCcccccccccccC----CCCeEEecCCCeecHHHHHHHHHcCCCCCcccccccC
Q 029389 137 GPEDEDVCPTCLEEYTL----ENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVF 190 (194)
Q Consensus 137 ~~~~~~~C~ICle~~~~----~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~ 190 (194)
...+...|+||++.|.. +.....++|+|.||..||.+|++.+.+||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 33567889999999974 2344778999999999999999999999999998753
No 12
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.50 E-value=9.3e-15 Score=107.36 Aligned_cols=51 Identities=27% Similarity=0.640 Sum_probs=41.4
Q ss_pred CCcccccccccccCCC---------------CeEEecCCCeecHHHHHHHHH-----cCCCCCcccccccC
Q 029389 140 DEDVCPTCLEEYTLEN---------------PKIVTQCRHHYHLSCIYEWME-----RSPTCPVCSKVMVF 190 (194)
Q Consensus 140 ~~~~C~ICle~~~~~~---------------~~~~l~C~H~FH~~CI~~Wl~-----~~~tCPvCR~~v~~ 190 (194)
.+..|+|||+.|.... ...+++|+|.||..||..||+ .+.+||+||+.+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 4568999999996532 334789999999999999994 46789999988754
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.50 E-value=1.3e-14 Score=95.55 Aligned_cols=53 Identities=25% Similarity=0.659 Sum_probs=45.6
Q ss_pred CCcccccccccccC----CCCeEEecCCCeecHHHHHHHHHcCCCCCcccccccCCC
Q 029389 140 DEDVCPTCLEEYTL----ENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVFDE 192 (194)
Q Consensus 140 ~~~~C~ICle~~~~----~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~~~ 192 (194)
++..|+||++.+.. ++....++|+|.||..||.+|++++.+||+||+.+..++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 46789999999974 244578899999999999999999999999999987654
No 14
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=2.6e-14 Score=99.71 Aligned_cols=56 Identities=29% Similarity=0.783 Sum_probs=46.8
Q ss_pred CCCCCCcccccccccccCCCCeEEecCC-----CeecHHHHHHHHHcC--CCCCcccccccCCC
Q 029389 136 LGPEDEDVCPTCLEEYTLENPKIVTQCR-----HHYHLSCIYEWMERS--PTCPVCSKVMVFDE 192 (194)
Q Consensus 136 ~~~~~~~~C~ICle~~~~~~~~~~l~C~-----H~FH~~CI~~Wl~~~--~tCPvCR~~v~~~~ 192 (194)
....++..|.||+++|..++.+ ++||+ |.||..||.+||+.+ .+||+||+.+.++.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 10 ITPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp CCCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 4445678999999999877665 58996 999999999999765 48999999998765
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=3.4e-14 Score=96.35 Aligned_cols=54 Identities=24% Similarity=0.484 Sum_probs=45.7
Q ss_pred CCCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccccccCCC
Q 029389 137 GPEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVFDE 192 (194)
Q Consensus 137 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~~~ 192 (194)
..+++..|+||++.|. +++.+++|+|.||..||.+|++.+..||+||+.+..++
T Consensus 11 ~~~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 11 ELTPYILCSICKGYLI--DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCCGGGSCTTTSSCCS--SCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred hcCCCCCCCCCChHHH--CcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 3456789999999997 35554599999999999999999999999999987654
No 16
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.46 E-value=2.6e-15 Score=112.00 Aligned_cols=54 Identities=22% Similarity=0.522 Sum_probs=2.1
Q ss_pred CCCCcccccccccccCC---------------CCeEEecCCCeecHHHHHHHHHcCCCCCcccccccCC
Q 029389 138 PEDEDVCPTCLEEYTLE---------------NPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVFD 191 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~---------------~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~~ 191 (194)
..+++.|+||++.|... ..+..++|+|.||..||.+||+++.+||+||+++.+.
T Consensus 45 d~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 45 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ 113 (117)
T ss_dssp CCCC-----------------------------------------------------------------
T ss_pred cCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeeee
Confidence 34568999999999742 1334468999999999999999999999999997664
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.45 E-value=3.6e-14 Score=94.83 Aligned_cols=49 Identities=33% Similarity=0.870 Sum_probs=43.4
Q ss_pred CCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCccccccc
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
+++..|+||++.+. ++...++|+|.||..||..|++++.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~--~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCCeeCCcccc--CCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 45678999999986 45678999999999999999999999999998864
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=3e-14 Score=95.85 Aligned_cols=52 Identities=27% Similarity=0.712 Sum_probs=45.1
Q ss_pred CCCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccccccCCC
Q 029389 137 GPEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVFDE 192 (194)
Q Consensus 137 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~~~ 192 (194)
...+...|+||++.+.. +.++|+|.||..||.+|++++.+||+||+.+...+
T Consensus 11 ~~~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred cCCCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 33557899999999873 77899999999999999999999999999887554
No 19
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=5.2e-14 Score=95.20 Aligned_cols=50 Identities=16% Similarity=0.406 Sum_probs=43.5
Q ss_pred CCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccccccC
Q 029389 138 PEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVF 190 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~ 190 (194)
..++..|+||++.+. ..+.++|+|.||..||..|++.+.+||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~---~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCV---HPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCS---SEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccC---CCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 356678999999986 45678999999999999999999999999998754
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.5e-13 Score=96.03 Aligned_cols=56 Identities=27% Similarity=0.576 Sum_probs=46.7
Q ss_pred CCCCCCcccccccccccCCCC-eEEecCCCeecHHHHHHHHHcC---CCCCcccccccCC
Q 029389 136 LGPEDEDVCPTCLEEYTLENP-KIVTQCRHHYHLSCIYEWMERS---PTCPVCSKVMVFD 191 (194)
Q Consensus 136 ~~~~~~~~C~ICle~~~~~~~-~~~l~C~H~FH~~CI~~Wl~~~---~tCPvCR~~v~~~ 191 (194)
....+...|+||++.|...+. .+.++|+|.||..||..|++.+ ..||+||+.+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 344567899999999986543 6778999999999999999876 7899999987654
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2.4e-13 Score=91.91 Aligned_cols=53 Identities=26% Similarity=0.647 Sum_probs=44.6
Q ss_pred CCCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHH---cCCCCCcccccccCCC
Q 029389 137 GPEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWME---RSPTCPVCSKVMVFDE 192 (194)
Q Consensus 137 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~---~~~tCPvCR~~v~~~~ 192 (194)
...++..|+||++.|. ..+.++|+|.||..||..|++ .+..||+||+.+..++
T Consensus 16 ~~~~~~~C~IC~~~~~---~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 16 KLQEEVICPICLDILQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCCBCTTTCSBCS---SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred hCccCCEeccCCcccC---CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 3456789999999987 456679999999999999996 4568999999987765
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.3e-13 Score=90.60 Aligned_cols=52 Identities=31% Similarity=0.667 Sum_probs=43.5
Q ss_pred CCCCcccccccccccCCCCeEEecCCCeecHHHHHHHH-HcCCCCCcccccccCCC
Q 029389 138 PEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWM-ERSPTCPVCSKVMVFDE 192 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl-~~~~tCPvCR~~v~~~~ 192 (194)
..++..|+||++.+. ++ ..++|||.||..||.+|+ ..+..||+||+.+..++
T Consensus 12 ~~~~~~C~IC~~~~~--~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLC--SP-KQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCCEECTTTCCEES--SC-CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CCcCCCCCCCChHhc--Ce-eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 356789999999997 33 447999999999999999 56678999999987664
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.38 E-value=3.2e-13 Score=92.16 Aligned_cols=53 Identities=30% Similarity=0.528 Sum_probs=43.3
Q ss_pred CCCCCcccccccccccCCCCeEEec-CCCeecHHHHHHHHHcC--CCCCcccccccCCC
Q 029389 137 GPEDEDVCPTCLEEYTLENPKIVTQ-CRHHYHLSCIYEWMERS--PTCPVCSKVMVFDE 192 (194)
Q Consensus 137 ~~~~~~~C~ICle~~~~~~~~~~l~-C~H~FH~~CI~~Wl~~~--~tCPvCR~~v~~~~ 192 (194)
...++..|+||++.|. ..++++ |+|.||..||..|++.+ ..||+||+.+...+
T Consensus 11 ~~~~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 11 PIPDELLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CSCGGGSCSSSCCCCT---TCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred cCCCCCCCcCCChHHh---CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 3456789999999997 345588 99999999999999765 68999999865443
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=4e-13 Score=92.97 Aligned_cols=49 Identities=29% Similarity=0.618 Sum_probs=42.8
Q ss_pred CCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCccccccc
Q 029389 138 PEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
..+...|+||++.|. ..++++|+|.||..||..|++....||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQ---NPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCC---SEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhc---CeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 345678999999996 3556899999999999999999999999999875
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.34 E-value=2.9e-13 Score=103.00 Aligned_cols=49 Identities=35% Similarity=0.792 Sum_probs=42.8
Q ss_pred CCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccccccC
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVF 190 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~ 190 (194)
+++..|+||++.|. ..++++|||.||..||..|+.++.+||+||+.+..
T Consensus 51 ~~~~~C~iC~~~~~---~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 51 ENELQCIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHHSBCTTTCSBCS---SEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cccCCCcccCcccC---CceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 34568999999996 45678999999999999999999999999998753
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.34 E-value=1.1e-12 Score=89.87 Aligned_cols=52 Identities=21% Similarity=0.462 Sum_probs=44.2
Q ss_pred CCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHc-CCCCCcccccccCCC
Q 029389 138 PEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMER-SPTCPVCSKVMVFDE 192 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~-~~tCPvCR~~v~~~~ 192 (194)
..++..|+||++.|. ..++++|||.||..||.+|++. +.+||+||+.+..++
T Consensus 5 ~~~~~~C~IC~~~~~---~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 5 FPEYFRCPISLELMK---DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57 (78)
T ss_dssp CSSSSSCTTTSCCCS---SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred CcccCCCCCcccccc---CCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence 356789999999996 4566899999999999999976 788999999886543
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.33 E-value=3.3e-13 Score=97.38 Aligned_cols=52 Identities=23% Similarity=0.684 Sum_probs=43.4
Q ss_pred CCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcC-CCCCcccccccCCC
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERS-PTCPVCSKVMVFDE 192 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~-~tCPvCR~~v~~~~ 192 (194)
.++..|+||++.|. +++..++|||.||..||..|++.+ ..||+||+.+..++
T Consensus 20 ~~~~~C~IC~~~~~--~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 20 AEVFRCFICMEKLR--DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72 (100)
T ss_dssp HHHTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCccCCcccc--CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence 45678999999997 344448999999999999999877 69999999886543
No 28
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.33 E-value=1.3e-12 Score=90.23 Aligned_cols=52 Identities=31% Similarity=0.676 Sum_probs=43.8
Q ss_pred CCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHc------CCCCCcccccccCCC
Q 029389 138 PEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMER------SPTCPVCSKVMVFDE 192 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~------~~tCPvCR~~v~~~~ 192 (194)
..++..|+||++.|. ...+++|+|.||..||..|++. ...||+||+.+..++
T Consensus 16 ~~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 16 IKEEVTCPICLELLK---EPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp CCTTTSCTTTCSCCS---SCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred CccCCCCcCCChhhC---cceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 355789999999987 3356899999999999999977 678999999887654
No 29
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=9.5e-13 Score=90.46 Aligned_cols=56 Identities=20% Similarity=0.557 Sum_probs=45.9
Q ss_pred CCCCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcC--CCCCcccccccCCCC
Q 029389 136 LGPEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERS--PTCPVCSKVMVFDET 193 (194)
Q Consensus 136 ~~~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~--~tCPvCR~~v~~~~~ 193 (194)
...+....|+||.+.|..+. ....|+|.||..||.+||+++ .+||+||+.+.+++.
T Consensus 10 ~y~~~i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~ 67 (74)
T 2ct0_A 10 TYPDAVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 67 (74)
T ss_dssp CCSSSSCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCC
T ss_pred hccCCCCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCC
Confidence 34456689999999998543 334899999999999999877 899999999987653
No 30
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.33 E-value=6.8e-13 Score=98.84 Aligned_cols=53 Identities=25% Similarity=0.672 Sum_probs=45.6
Q ss_pred CCCcccccccccccC----CCCeEEecCCCeecHHHHHHHHHcCCCCCcccccccCC
Q 029389 139 EDEDVCPTCLEEYTL----ENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVFD 191 (194)
Q Consensus 139 ~~~~~C~ICle~~~~----~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~~ 191 (194)
.++.+|+||++.|.. +...+.++|||.||..||.+|++.+.+||+||+.+...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 456899999999974 24458899999999999999999999999999988654
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2.5e-12 Score=84.72 Aligned_cols=45 Identities=31% Similarity=0.778 Sum_probs=37.9
Q ss_pred CCCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHH---cCCCCCcc
Q 029389 137 GPEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWME---RSPTCPVC 184 (194)
Q Consensus 137 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~---~~~tCPvC 184 (194)
..+++..|+||++.|. ..++++|+|.||..||.+|++ .+..||+|
T Consensus 16 ~~~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCS---SCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhC---CeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4456789999999997 345679999999999999997 45689998
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.29 E-value=4.3e-13 Score=91.88 Aligned_cols=52 Identities=31% Similarity=0.672 Sum_probs=43.3
Q ss_pred CCCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHc-------CCCCCcccccccCC
Q 029389 137 GPEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMER-------SPTCPVCSKVMVFD 191 (194)
Q Consensus 137 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~-------~~tCPvCR~~v~~~ 191 (194)
...++..|+||++.|. ..+.++|||.||..||..|++. ...||+||+.+..+
T Consensus 8 ~~~~~~~C~IC~~~~~---~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 8 NVQEEVTCPICLELLT---EPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCCCEETTTTEECS---SCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred hcccCCCCcCCCcccC---CeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 3456789999999997 2445899999999999999976 66899999988654
No 33
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.7e-12 Score=89.65 Aligned_cols=52 Identities=27% Similarity=0.658 Sum_probs=43.8
Q ss_pred CCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHc------CCCCCcccccccCCC
Q 029389 138 PEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMER------SPTCPVCSKVMVFDE 192 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~------~~tCPvCR~~v~~~~ 192 (194)
..++..|+||++.|. ....++|+|.||..||..|++. ...||+||+.+..++
T Consensus 16 ~~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 16 VKEEVTCPICLELLT---QPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCCTTTCSCCS---SCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred ccCCCCCCCCCcccC---CceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 355689999999996 3455799999999999999977 789999999887654
No 34
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.29 E-value=2e-12 Score=85.74 Aligned_cols=53 Identities=26% Similarity=0.587 Sum_probs=41.7
Q ss_pred CCcccccccc-cccCCCC-eEEecCCCeecHHHHHHHHHc-CCCCCcccccccCCC
Q 029389 140 DEDVCPTCLE-EYTLENP-KIVTQCRHHYHLSCIYEWMER-SPTCPVCSKVMVFDE 192 (194)
Q Consensus 140 ~~~~C~ICle-~~~~~~~-~~~l~C~H~FH~~CI~~Wl~~-~~tCPvCR~~v~~~~ 192 (194)
++..|+||++ .|..... ...++|||.||..||.+|+.+ +..||+||+.+..++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 4678999999 7764322 246799999999999999854 467999999886544
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.29 E-value=8.5e-13 Score=94.64 Aligned_cols=49 Identities=29% Similarity=0.671 Sum_probs=41.9
Q ss_pred CCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccccccC
Q 029389 140 DEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVF 190 (194)
Q Consensus 140 ~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~ 190 (194)
++..|+||++.|. +++..++|||.||..||..|++.+.+||+||+.+..
T Consensus 21 ~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFN--IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhC--CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 4678999999997 344444899999999999999999999999998764
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.27 E-value=2.5e-12 Score=93.69 Aligned_cols=51 Identities=22% Similarity=0.597 Sum_probs=43.3
Q ss_pred CCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccccccCC
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVFD 191 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~~ 191 (194)
.++..|+||++.|. +++.+++|||.||..||..|++.+..||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHh--CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 45789999999997 3444449999999999999999999999999987653
No 37
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.27 E-value=7e-12 Score=88.46 Aligned_cols=51 Identities=31% Similarity=0.527 Sum_probs=42.2
Q ss_pred CCCCCCcccccccccccCCCCeEEec-CCCeecHHHHHHHHHcC--CCCCccccccc
Q 029389 136 LGPEDEDVCPTCLEEYTLENPKIVTQ-CRHHYHLSCIYEWMERS--PTCPVCSKVMV 189 (194)
Q Consensus 136 ~~~~~~~~C~ICle~~~~~~~~~~l~-C~H~FH~~CI~~Wl~~~--~tCPvCR~~v~ 189 (194)
....++..|+||++.|. ..++++ |||.||..||..|+..+ ..||+||+.+.
T Consensus 8 ~~~~~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCCTTTEETTTTEECS---SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred ccCCcCCCCCCCChhhc---CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 34456789999999997 345688 99999999999999654 58999999873
No 38
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.26 E-value=2.7e-12 Score=95.55 Aligned_cols=54 Identities=24% Similarity=0.662 Sum_probs=46.0
Q ss_pred CCCcccccccccccC----CCCeEEecCCCeecHHHHHHHHHcCCCCCcccccccCCC
Q 029389 139 EDEDVCPTCLEEYTL----ENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVFDE 192 (194)
Q Consensus 139 ~~~~~C~ICle~~~~----~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~~~ 192 (194)
++...|+||++.|.. +.....++|+|.||..||.+|++.+.+||+||+.+..++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 456789999999874 344577899999999999999999999999999987553
No 39
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=3.9e-12 Score=82.04 Aligned_cols=44 Identities=36% Similarity=0.893 Sum_probs=36.7
Q ss_pred CCCCcccccccccccCCCCeEEecCCCeecHHHHHHHH---HcCCCCCcc
Q 029389 138 PEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWM---ERSPTCPVC 184 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl---~~~~tCPvC 184 (194)
..++..|+||++.+.. .++++|+|.||..||.+|+ +++.+||+|
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKE---PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSS---CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCc---cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3456799999999973 3558999999999999995 456789998
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.21 E-value=6.4e-12 Score=93.62 Aligned_cols=49 Identities=24% Similarity=0.459 Sum_probs=41.9
Q ss_pred CCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCC-CCCcccccccC
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSP-TCPVCSKVMVF 190 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~-tCPvCR~~v~~ 190 (194)
.++..|+||++.|. ..+.++|||.||..||..|+..+. .||+||+.+..
T Consensus 50 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVF---RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHc---CcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 45678999999997 456689999999999999997544 89999998865
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.18 E-value=6.6e-12 Score=97.95 Aligned_cols=49 Identities=31% Similarity=0.762 Sum_probs=41.7
Q ss_pred CCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHc-CCCCCccccccc
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMER-SPTCPVCSKVMV 189 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~-~~tCPvCR~~v~ 189 (194)
.++..|+||++.|. +++.+++|||.||..||..|++. +..||+||+.+.
T Consensus 52 ~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 52 HSELMCPICLDMLK--NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHHBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCCcccChHhh--CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 45679999999997 34444599999999999999986 778999999874
No 42
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.17 E-value=1.3e-11 Score=91.37 Aligned_cols=52 Identities=25% Similarity=0.601 Sum_probs=43.7
Q ss_pred CCCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCC-CCCcccccccCC
Q 029389 137 GPEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSP-TCPVCSKVMVFD 191 (194)
Q Consensus 137 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~-tCPvCR~~v~~~ 191 (194)
...++..|+||++.+. ..+.++|||.||..||..|++.+. +||+||+.+..+
T Consensus 14 ~~~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 14 PLESKYECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CCCGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcCChhhc---CeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 4456789999999997 346689999999999999997665 999999987654
No 43
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.17 E-value=9.1e-12 Score=90.67 Aligned_cols=50 Identities=24% Similarity=0.625 Sum_probs=41.4
Q ss_pred CCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCC---CCCcccccccCCC
Q 029389 140 DEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSP---TCPVCSKVMVFDE 192 (194)
Q Consensus 140 ~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~---tCPvCR~~v~~~~ 192 (194)
+...|+||++.|. ....++|||.||..||..|++.+. .||+||+.+..++
T Consensus 20 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 20 KILECPICLELIK---EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HHTSCSSSCCCCS---SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCCcccChhhc---CeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 4568999999986 334589999999999999998654 8999999886543
No 44
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.14 E-value=1.9e-11 Score=90.00 Aligned_cols=50 Identities=20% Similarity=0.492 Sum_probs=42.5
Q ss_pred CCcccccccccccCCCCeEEecCCCeecHHHHHHHHHc-CCCCCcccccccCCC
Q 029389 140 DEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMER-SPTCPVCSKVMVFDE 192 (194)
Q Consensus 140 ~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~-~~tCPvCR~~v~~~~ 192 (194)
++..|+||++.+. ..+.++|||.||..||..|++. ..+||+||+.+..++
T Consensus 22 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 22 KSISCQICEHILA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHTBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCcHhc---CcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 4678999999996 4556899999999999999976 778999999876543
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.13 E-value=2.8e-11 Score=93.52 Aligned_cols=50 Identities=22% Similarity=0.506 Sum_probs=42.6
Q ss_pred CCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCC-CCCcccccccCC
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSP-TCPVCSKVMVFD 191 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~-tCPvCR~~v~~~ 191 (194)
.++..|+||++.|. ..++++|+|.||..||..|++... .||+||+.+..+
T Consensus 76 ~~~~~C~IC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 76 EQSFMCVCCQELVY---QPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHTBCTTTSSBCS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred ccCCEeecCChhhc---CCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 35678999999996 456689999999999999998654 899999988765
No 46
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.12 E-value=6.2e-12 Score=92.45 Aligned_cols=50 Identities=24% Similarity=0.544 Sum_probs=42.1
Q ss_pred CCCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHc-CCCCCccccccc
Q 029389 137 GPEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMER-SPTCPVCSKVMV 189 (194)
Q Consensus 137 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~-~~tCPvCR~~v~ 189 (194)
...++..|+||++.|. ..+.++|||.||..||..|++. +..||+||+.+.
T Consensus 11 ~~~~~~~C~iC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 11 PSLSECQCGICMEILV---EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp CCHHHHBCTTTCSBCS---SCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCCCccCCcccC---ceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 3455789999999987 4566799999999999999965 678999999875
No 47
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.10 E-value=7.5e-11 Score=82.71 Aligned_cols=51 Identities=20% Similarity=0.098 Sum_probs=44.6
Q ss_pred CCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccccccCC
Q 029389 138 PEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVFD 191 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~~ 191 (194)
..++..|+||++.|. ..++++|||.|++.||..|+..+.+||+||+.+..+
T Consensus 11 ~p~~~~CpI~~~~m~---dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 11 APDEFRDPLMDTLMT---DPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CCTTTBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CchheECcccCchhc---CCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 346789999999997 556788999999999999999889999999987654
No 48
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.09 E-value=6.4e-11 Score=81.96 Aligned_cols=54 Identities=24% Similarity=0.482 Sum_probs=41.4
Q ss_pred CCCCcccccccccccCCCCeE-EecCCCeecHHHHHHHHH-cCCCCCcccccccCC
Q 029389 138 PEDEDVCPTCLEEYTLENPKI-VTQCRHHYHLSCIYEWME-RSPTCPVCSKVMVFD 191 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~~~-~l~C~H~FH~~CI~~Wl~-~~~tCPvCR~~v~~~ 191 (194)
.+++.+|+||++.+...+... .++|||.||..||..|++ ....||+||+.+...
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 456789999999986433322 135999999999999984 456899999987543
No 49
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.08 E-value=3.9e-11 Score=91.83 Aligned_cols=51 Identities=22% Similarity=0.602 Sum_probs=42.5
Q ss_pred CCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCC-CCCcccccccCC
Q 029389 138 PEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSP-TCPVCSKVMVFD 191 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~-tCPvCR~~v~~~ 191 (194)
.+++..|+||++.|. ..+.++|||.||..||..|++... +||+||+++.++
T Consensus 28 l~~~~~C~IC~~~~~---~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 28 LEAKYLCSACRNVLR---RPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYE 79 (141)
T ss_dssp CCGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred CCcCcCCCCCChhhc---CcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence 356789999999997 346689999999999999997664 899999976543
No 50
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.07 E-value=8.6e-11 Score=78.11 Aligned_cols=48 Identities=19% Similarity=0.466 Sum_probs=40.6
Q ss_pred CCCcccccccccccCCCCeEEe--cCCCe-ecHHHHHHHHHcCCCCCccccccc
Q 029389 139 EDEDVCPTCLEEYTLENPKIVT--QCRHH-YHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l--~C~H~-FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
+++..|.||++.+. ....+ ||||. |+..|+..|++.+..||+||+.+.
T Consensus 6 ~~~~~C~IC~~~~~---~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPK---NGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCS---CEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCC---CEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 45678999999875 33444 99999 899999999998999999999874
No 51
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.06 E-value=1.6e-10 Score=83.27 Aligned_cols=52 Identities=17% Similarity=0.103 Sum_probs=45.3
Q ss_pred CCCCcccccccccccCCCCeEEecCC-CeecHHHHHHHHHcCCCCCcccccccCCC
Q 029389 138 PEDEDVCPTCLEEYTLENPKIVTQCR-HHYHLSCIYEWMERSPTCPVCSKVMVFDE 192 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~~~~l~C~-H~FH~~CI~~Wl~~~~tCPvCR~~v~~~~ 192 (194)
..++..|+||++.|. ..++++|| |.|++.||.+||..+.+||+||+.+..++
T Consensus 19 ~p~~~~CpI~~~~m~---dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~ 71 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMC---DPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ 71 (98)
T ss_dssp CCTTTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTT
T ss_pred CcHhcCCcCcccccc---CCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhh
Confidence 356789999999997 55668999 99999999999988889999999887654
No 52
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.05 E-value=1.5e-10 Score=83.74 Aligned_cols=52 Identities=19% Similarity=0.071 Sum_probs=45.2
Q ss_pred CCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccccccCCC
Q 029389 138 PEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVFDE 192 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~~~ 192 (194)
..++..|+||++.|. ..++++|||.|++.||..||..+.+||+||+.+..++
T Consensus 26 ~p~~~~CpI~~~~m~---dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 26 APDEFRDPLMDTLMT---DPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESM 77 (100)
T ss_dssp CSTTTBCTTTCSBCS---SEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTS
T ss_pred CcHhhCCcCccCccc---CCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhh
Confidence 356789999999997 5566889999999999999998899999999887654
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.02 E-value=4.9e-11 Score=77.12 Aligned_cols=48 Identities=19% Similarity=0.373 Sum_probs=40.3
Q ss_pred CCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccccccCCC
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVFDE 192 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~~~ 192 (194)
.++..|+||++.|. ..++++|+|.||..||..| ...||+||+.+....
T Consensus 4 ~~~~~C~IC~~~~~---~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAK---CPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCB---CCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccC---CeEEcCCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 56778999999997 3466899999999999884 668999999887654
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.99 E-value=2.4e-10 Score=75.70 Aligned_cols=48 Identities=17% Similarity=0.398 Sum_probs=40.1
Q ss_pred CCCcccccccccccCCCCeEEe--cCCCe-ecHHHHHHHHHcCCCCCccccccc
Q 029389 139 EDEDVCPTCLEEYTLENPKIVT--QCRHH-YHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l--~C~H~-FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
+.+..|.||++... ....+ ||||. |+..|+..|++++..||+||+.+.
T Consensus 5 ~~~~~C~IC~~~~~---~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPR---DGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBS---CEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCC---CeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 45678999999865 33444 99998 999999999988899999999874
No 55
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.98 E-value=7.5e-11 Score=87.05 Aligned_cols=50 Identities=22% Similarity=0.572 Sum_probs=40.9
Q ss_pred CCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccccccCCC
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVFDE 192 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~~~ 192 (194)
.++..|+||++.|. +++.+.+|||.||..||..|+. ..||+||+.+...+
T Consensus 20 ~~~~~C~IC~~~~~--~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~ 69 (117)
T 1jm7_B 20 EKLLRCSRCTNILR--EPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQD 69 (117)
T ss_dssp HHTTSCSSSCSCCS--SCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSS
T ss_pred hhCCCCCCCChHhh--CccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcccc
Confidence 35688999999996 3444339999999999999998 77999999886543
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.95 E-value=5.7e-10 Score=98.22 Aligned_cols=47 Identities=26% Similarity=0.595 Sum_probs=41.4
Q ss_pred CcccccccccccCCCCeEEecCCCeecHHHHHHHHH-cCCCCCcccccccC
Q 029389 141 EDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWME-RSPTCPVCSKVMVF 190 (194)
Q Consensus 141 ~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~-~~~tCPvCR~~v~~ 190 (194)
...|+||++.+. ..+.++|||.||..||..|++ .+.+||+||+.+..
T Consensus 332 ~~~C~ICle~~~---~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBC---CEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCC---CeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 468999999985 567799999999999999998 78899999998754
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.92 E-value=2.5e-10 Score=77.78 Aligned_cols=43 Identities=23% Similarity=0.668 Sum_probs=37.5
Q ss_pred CCcccccccccccCCCCeEEecCCCe-ecHHHHHHHHHcCCCCCccccccc
Q 029389 140 DEDVCPTCLEEYTLENPKIVTQCRHH-YHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 140 ~~~~C~ICle~~~~~~~~~~l~C~H~-FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
++..|+||++.+. ..+.++|||. ||..||..| ..||+||+.+.
T Consensus 23 ~~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRNI---AIVFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSBC---CEEEETTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred cCCCCCCCCCCCC---CEEEcCCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 4568999999986 5677899999 999999999 78999999874
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=7.5e-10 Score=78.86 Aligned_cols=47 Identities=28% Similarity=0.546 Sum_probs=38.9
Q ss_pred CCCCcccccccccccCCCCeEEe-cCCCeecHHHHHHHHHcC------CCCCc--cccc
Q 029389 138 PEDEDVCPTCLEEYTLENPKIVT-QCRHHYHLSCIYEWMERS------PTCPV--CSKV 187 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~~~~l-~C~H~FH~~CI~~Wl~~~------~tCPv--CR~~ 187 (194)
..++..|+||++.|. ..+++ .|||.|+..||.+||..+ .+||+ |++.
T Consensus 4 ~~~~~~CPI~~~~~~---dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 4 GSSGFTCPITKEEMK---KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSSCCBCTTTCSBCS---SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCcEeECcCcCchhc---CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 356789999999997 34556 499999999999999653 48999 9865
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.91 E-value=6.3e-10 Score=86.93 Aligned_cols=52 Identities=25% Similarity=0.604 Sum_probs=43.4
Q ss_pred CCCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcC-CCCCcccccccCC
Q 029389 137 GPEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERS-PTCPVCSKVMVFD 191 (194)
Q Consensus 137 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~-~tCPvCR~~v~~~ 191 (194)
...++..|+||++.|. ..+.++|||.|+..||.+|++.+ .+||+||+.+..+
T Consensus 14 ~~~~~~~C~IC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 14 PLESKYECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCCGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCChhhc---CcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 4466789999999997 34668999999999999999654 4999999987654
No 60
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.84 E-value=2.7e-09 Score=70.16 Aligned_cols=50 Identities=32% Similarity=0.677 Sum_probs=39.1
Q ss_pred CCCCcccccccccccCCCCeEEecCC--C---eecHHHHHHHHHc--CCCCCcccccccC
Q 029389 138 PEDEDVCPTCLEEYTLENPKIVTQCR--H---HYHLSCIYEWMER--SPTCPVCSKVMVF 190 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~~~~l~C~--H---~FH~~CI~~Wl~~--~~tCPvCR~~v~~ 190 (194)
.+++..|.||+++.. +.. ++||. | .||..||.+|+.. +.+||+|++.+.+
T Consensus 3 ~~~~~~CrIC~~~~~--~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 3 DEDVPVCWICNEELG--NER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp TCSCCEETTTTEECS--CCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCCEeEEeecCCC--Cce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 356778999999843 333 58865 4 9999999999954 6789999998765
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.79 E-value=3.2e-09 Score=87.98 Aligned_cols=53 Identities=17% Similarity=0.087 Sum_probs=43.7
Q ss_pred CCCCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcC-CCCCcccccccCC
Q 029389 136 LGPEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERS-PTCPVCSKVMVFD 191 (194)
Q Consensus 136 ~~~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~-~tCPvCR~~v~~~ 191 (194)
....+...|+||++.|. ..++++|||.|+..||..|+..+ .+||+||..+..+
T Consensus 203 ~~~~~~~~c~i~~~~~~---dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 203 RDIPDYLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp CCCCSTTBCTTTCSBCS---SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred CCCCcccCCcCcCCHhc---CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 33456789999999997 55678999999999999999764 4599999988644
No 62
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.76 E-value=1.5e-09 Score=93.92 Aligned_cols=53 Identities=21% Similarity=0.480 Sum_probs=41.0
Q ss_pred CCCCcccccccccccC-CCCe----EEecCCCeecHHHHHHHHHcC-----------CCCCcccccccC
Q 029389 138 PEDEDVCPTCLEEYTL-ENPK----IVTQCRHHYHLSCIYEWMERS-----------PTCPVCSKVMVF 190 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~-~~~~----~~l~C~H~FH~~CI~~Wl~~~-----------~tCPvCR~~v~~ 190 (194)
.+...+|+||++.+.. +... ...+|+|.||..||++||++. .+||.||++|..
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 3466789999999986 3222 134799999999999999753 469999998754
No 63
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.73 E-value=5.1e-09 Score=74.18 Aligned_cols=49 Identities=29% Similarity=0.706 Sum_probs=38.9
Q ss_pred CCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHc--------CCCCCc--cccc
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMER--------SPTCPV--CSKV 187 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~--------~~tCPv--CR~~ 187 (194)
.+..+|+||++++...+....++|+|.||..||..+++. ...||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 456789999999875444444579999999999999953 237999 9987
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=2.9e-09 Score=72.53 Aligned_cols=44 Identities=25% Similarity=0.717 Sum_probs=36.1
Q ss_pred CCcccccccccccCCCCeEEecCCCe-ecHHHHHHHHHcCCCCCcccccccC
Q 029389 140 DEDVCPTCLEEYTLENPKIVTQCRHH-YHLSCIYEWMERSPTCPVCSKVMVF 190 (194)
Q Consensus 140 ~~~~C~ICle~~~~~~~~~~l~C~H~-FH~~CI~~Wl~~~~tCPvCR~~v~~ 190 (194)
++..|+||++.+. ..+.++|+|. ||..|+.. ...||+||+.+..
T Consensus 24 ~~~~C~IC~~~~~---~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNI---AIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCC---CBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCC---CEEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 4568999999986 4566899999 99999964 4789999998754
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=1.4e-08 Score=68.19 Aligned_cols=45 Identities=22% Similarity=0.574 Sum_probs=37.3
Q ss_pred CCCCcccccccccccCCCCeEEecCCCe-ecHHHHHHHHHcCCCCCccccccc
Q 029389 138 PEDEDVCPTCLEEYTLENPKIVTQCRHH-YHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~~~~l~C~H~-FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
.+++..|.||++... ..+.+||+|. |+..|+.. ...||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~ 57 (68)
T 2ea5_A 12 EENSKDCVVCQNGTV---NWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQ 57 (68)
T ss_dssp CCCSSCCSSSSSSCC---CCEETTTTBCCSCTTHHHH----CSSCTTTCCCCC
T ss_pred CCCCCCCCCcCcCCC---CEEEECCCChhhhHHHHhc----CCCCCCCCcchh
Confidence 345678999999875 5677899999 99999983 578999999764
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.64 E-value=2.2e-08 Score=79.50 Aligned_cols=53 Identities=19% Similarity=0.085 Sum_probs=44.2
Q ss_pred CCCCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcC-CCCCcccccccCC
Q 029389 136 LGPEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERS-PTCPVCSKVMVFD 191 (194)
Q Consensus 136 ~~~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~-~tCPvCR~~v~~~ 191 (194)
....+...|+||++.|. ..++++|||.|+..||..|+..+ .+||+|+..+...
T Consensus 101 ~~ip~~f~CPI~~elm~---DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 101 REIPDYLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CCCCGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cCCcHhhcccCccccCC---CCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 34457789999999997 45667999999999999999764 4699999988654
No 67
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.62 E-value=1.3e-08 Score=85.04 Aligned_cols=52 Identities=27% Similarity=0.600 Sum_probs=43.2
Q ss_pred CCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcC--CCCCc--ccccccCC
Q 029389 138 PEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERS--PTCPV--CSKVMVFD 191 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~--~tCPv--CR~~v~~~ 191 (194)
...+..|+||++.|. ++++.+.|||.|++.||..|++.+ .+||+ |++.+...
T Consensus 178 ~~~el~CPIcl~~f~--DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 178 GKIELTCPITCKPYE--APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 233 (267)
T ss_dssp SBCCSBCTTTSSBCS--SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred CceeeECcCccCccc--CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence 356789999999997 566666999999999999999754 47999 99977544
No 68
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.60 E-value=7.8e-09 Score=71.39 Aligned_cols=43 Identities=28% Similarity=0.604 Sum_probs=36.4
Q ss_pred CCcccccccccccCCCCeEEecCCCe-ecHHHHHHHHHcCCCCCccccccc
Q 029389 140 DEDVCPTCLEEYTLENPKIVTQCRHH-YHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 140 ~~~~C~ICle~~~~~~~~~~l~C~H~-FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
++..|+||++.+. ..+.+||||. |+..|+..|. .||+||+.+.
T Consensus 17 ~~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~ 60 (79)
T 2yho_A 17 EAMLCMVCCEEEI---NSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVE 60 (79)
T ss_dssp HHTBCTTTSSSBC---CEEEETTCBCCBCHHHHTTCS----BCTTTCCBCC
T ss_pred CCCEeEEeCcccC---cEEEECCCCHHHHHHHHHhcC----cCCCCCchhh
Confidence 3568999999875 5677899999 9999999873 8999999764
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.52 E-value=4.8e-08 Score=64.28 Aligned_cols=48 Identities=13% Similarity=0.342 Sum_probs=41.7
Q ss_pred cccccccccccCCCCeEEe-cCCCeecHHHHHHHHHcCCCCCcccccccCCC
Q 029389 142 DVCPTCLEEYTLENPKIVT-QCRHHYHLSCIYEWMERSPTCPVCSKVMVFDE 192 (194)
Q Consensus 142 ~~C~ICle~~~~~~~~~~l-~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~~~ 192 (194)
..|+|+++.+. ++ .++ ++||.|.+.||.+||+++.+||+.++++..++
T Consensus 4 ~~CpIs~~~m~--dP-V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 4 MLCAISGKVPR--RP-VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 52 (61)
T ss_dssp CCCTTTCSCCS--SE-EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred EEecCCCCCCC--CC-EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhh
Confidence 57999999997 44 556 89999999999999988889999999887654
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.37 E-value=7.7e-08 Score=83.59 Aligned_cols=44 Identities=20% Similarity=0.671 Sum_probs=37.9
Q ss_pred CCCcccccccccccCCCCeEEecCCCe-ecHHHHHHHHHcCCCCCccccccc
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQCRHH-YHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~C~H~-FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
+++..|+||++.+. ..+.++|||. ||..||..| ..||+||..+.
T Consensus 293 ~~~~~C~IC~~~~~---~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 293 QEERTCKVCMDKEV---SVVFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp HTTCBCTTTSSSBC---CEEEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred cCCCCCCccCCcCC---ceEEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 34678999999986 5677899999 999999998 67999999874
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.11 E-value=1.8e-06 Score=61.90 Aligned_cols=45 Identities=20% Similarity=0.452 Sum_probs=36.8
Q ss_pred ccccccccccCCCCeEEecCCCeecHHHHHHHHH-cCCCCCccccccc
Q 029389 143 VCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWME-RSPTCPVCSKVMV 189 (194)
Q Consensus 143 ~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~-~~~tCPvCR~~v~ 189 (194)
-|.+|--.+. ...+++||+|.|+.+|+..|.+ +.++||.|+..+.
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 3777777765 3567789999999999999985 5688999998875
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.95 E-value=4e-06 Score=69.21 Aligned_cols=52 Identities=17% Similarity=0.543 Sum_probs=41.8
Q ss_pred CCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCC--CCCcccccccCCC
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSP--TCPVCSKVMVFDE 192 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~--tCPvCR~~v~~~~ 192 (194)
+....|.||.+.+..+ .+...|+|.||..|+..|++.+. .||.|+..++.+.
T Consensus 178 ~~i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 178 DAVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 231 (238)
T ss_dssp TTCCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCC
T ss_pred CCCCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 3577899999999854 33334999999999999997654 8999999887663
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.35 E-value=0.0012 Score=46.65 Aligned_cols=51 Identities=22% Similarity=0.492 Sum_probs=41.2
Q ss_pred CCCCCCcccccccccccCCCCeEEecC-CCeecHHHHHHHHHcCCCCCcccccccCC
Q 029389 136 LGPEDEDVCPTCLEEYTLENPKIVTQC-RHHYHLSCIYEWMERSPTCPVCSKVMVFD 191 (194)
Q Consensus 136 ~~~~~~~~C~ICle~~~~~~~~~~l~C-~H~FH~~CI~~Wl~~~~tCPvCR~~v~~~ 191 (194)
...-.-..|..||-+.+ ..+.| .|.+|+.||...|.++..||+|+++++..
T Consensus 23 ~s~~G~~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 23 ATHLGPQFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCSCCCCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred ccccCcccChhhccccC-----CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 33445678999997753 34557 69999999999999999999999988764
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.65 E-value=0.0062 Score=42.77 Aligned_cols=35 Identities=17% Similarity=0.420 Sum_probs=26.7
Q ss_pred CCcccccccccccCCCCeEEecCCCeecHHHHHHH
Q 029389 140 DEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEW 174 (194)
Q Consensus 140 ~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~W 174 (194)
++..|.||++.+.......-+.|+|.|+..||..|
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 46789999987543333334899999999999983
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=93.23 E-value=0.06 Score=35.36 Aligned_cols=46 Identities=22% Similarity=0.487 Sum_probs=33.5
Q ss_pred CCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCC----CCCccccc
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSP----TCPVCSKV 187 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~----tCPvCR~~ 187 (194)
.....|.||.+. ++.+.--.|...||..|+...|.... .||.|+..
T Consensus 10 ~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 345679999853 34444446899999999998885432 69999764
No 76
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=88.39 E-value=0.21 Score=31.99 Aligned_cols=47 Identities=28% Similarity=0.692 Sum_probs=32.7
Q ss_pred CCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHc----CCCCCccccc
Q 029389 138 PEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMER----SPTCPVCSKV 187 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~----~~tCPvCR~~ 187 (194)
...+..|.||.+. ++.+.--.|...||..|+..-|.. .-.||.|++.
T Consensus 8 ~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3456789999873 333333368899999999876533 2369999764
No 77
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=87.26 E-value=0.3 Score=29.84 Aligned_cols=44 Identities=20% Similarity=0.555 Sum_probs=29.2
Q ss_pred ccccccccccCCCCeEEecCCCeecHHHHHHHHHcC----CCCCcccc
Q 029389 143 VCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERS----PTCPVCSK 186 (194)
Q Consensus 143 ~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~----~tCPvCR~ 186 (194)
.|.||...-..++.+.--.|...||..|+..=|... -.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588888764333344444689999999997544322 25999965
No 78
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=85.81 E-value=0.23 Score=35.40 Aligned_cols=39 Identities=23% Similarity=0.399 Sum_probs=27.9
Q ss_pred CCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHH
Q 029389 138 PEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWME 176 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~ 176 (194)
..+++.|.||.+.=..++.+.-..|...||..||..++.
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 356789999987633222344457899999999987764
No 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=84.68 E-value=0.21 Score=33.16 Aligned_cols=51 Identities=20% Similarity=0.398 Sum_probs=33.6
Q ss_pred CCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHc----CCCCCccccccc
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMER----SPTCPVCSKVMV 189 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~----~~tCPvCR~~v~ 189 (194)
.+...|.||......+.-+.--.|.--||..|+..-+.. .-.||.|+..+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 345679999887542222222358899999999765532 346999987654
No 80
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=82.71 E-value=0.58 Score=32.44 Aligned_cols=53 Identities=19% Similarity=0.519 Sum_probs=36.3
Q ss_pred CCCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcC----CCCCcccccccCCC
Q 029389 137 GPEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERS----PTCPVCSKVMVFDE 192 (194)
Q Consensus 137 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~----~tCPvCR~~v~~~~ 192 (194)
....+..|.||.+. ++.+.--.|.-.||..|+..=|... -.||.|+..-..++
T Consensus 21 ~d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~~ke 77 (88)
T 1fp0_A 21 LDDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKE 77 (88)
T ss_dssp SSSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCSSCC
T ss_pred cCCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCccch
Confidence 34566789999965 3444434688899999997766432 25999986554443
No 81
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=82.60 E-value=0.21 Score=32.01 Aligned_cols=47 Identities=19% Similarity=0.508 Sum_probs=32.3
Q ss_pred CCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcC----CCCCcccccc
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERS----PTCPVCSKVM 188 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~----~tCPvCR~~v 188 (194)
..+..|.||.+. ++.+.--.|...||..|+..-|... -.||.|+...
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 456789999863 3333334688999999998655332 2599997654
No 82
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=82.15 E-value=0.29 Score=31.35 Aligned_cols=50 Identities=24% Similarity=0.517 Sum_probs=33.9
Q ss_pred CCCCcccccccccccCCCCeEE-ecCCCeecHHHHHHHHH-----cCCCCCccccc
Q 029389 138 PEDEDVCPTCLEEYTLENPKIV-TQCRHHYHLSCIYEWME-----RSPTCPVCSKV 187 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~~~~-l~C~H~FH~~CI~~Wl~-----~~~tCPvCR~~ 187 (194)
.++...|+||...+..+...+. -.|..=||..|+.--.. ..-.||.|+..
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 4567789999998864333222 35888999999864332 34579999754
No 83
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=82.06 E-value=1.1 Score=30.85 Aligned_cols=37 Identities=19% Similarity=0.459 Sum_probs=24.1
Q ss_pred CCCCCcccccccccccCCCCeEEecCCCeecHHHHHHH
Q 029389 137 GPEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEW 174 (194)
Q Consensus 137 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~W 174 (194)
....+..|.||- .|..+....---|+-.||..|+.+-
T Consensus 11 ~~~~D~~C~VC~-~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 11 PVVNDEMCDVCE-VWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCSCCCTTTC-CCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCCcccCccc-cccccceeccccccccccHhhcccc
Confidence 334678999985 3332222222237999999999996
No 84
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.54 E-value=0.14 Score=32.19 Aligned_cols=46 Identities=26% Similarity=0.644 Sum_probs=31.5
Q ss_pred CCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcC----CCCCcccc
Q 029389 138 PEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERS----PTCPVCSK 186 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~----~tCPvCR~ 186 (194)
...+..|.||.+. ++.+.--.|...||..|+..-|... -.||.|++
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4567789999974 3444444689999999998655332 24887753
No 85
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=81.45 E-value=1.2 Score=43.30 Aligned_cols=51 Identities=14% Similarity=0.099 Sum_probs=42.9
Q ss_pred CCCCcccccccccccCCCCeEEecCC-CeecHHHHHHHHHcCCCCCcccccccCC
Q 029389 138 PEDEDVCPTCLEEYTLENPKIVTQCR-HHYHLSCIYEWMERSPTCPVCSKVMVFD 191 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~~~~l~C~-H~FH~~CI~~Wl~~~~tCPvCR~~v~~~ 191 (194)
.-++..|||-++.+. ..++++-| +.|-+..|.+||.++.+||+=|+++..+
T Consensus 888 iP~~F~cPIs~~lM~---DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 888 VPDEFLDPLMYTIMK---DPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp SCGGGBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CcHHhCCcchhhHHh---CCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 345788999999997 55668887 6899999999999899999988887654
No 86
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=81.11 E-value=0.13 Score=32.83 Aligned_cols=48 Identities=27% Similarity=0.634 Sum_probs=33.1
Q ss_pred CCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcC----CCCCccccccc
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERS----PTCPVCSKVMV 189 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~----~tCPvCR~~v~ 189 (194)
..+..|.||... ++.+.--.|...||..|+..-|... -.||.|+....
T Consensus 3 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 456789999874 3444444689999999998655332 25999975443
No 87
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=80.97 E-value=1.3 Score=38.38 Aligned_cols=50 Identities=18% Similarity=0.419 Sum_probs=35.8
Q ss_pred CcccccccccccCCCCeEEecCCCe--ecHHHHHHHHHcC--CCCCcccccccCCC
Q 029389 141 EDVCPTCLEEYTLENPKIVTQCRHH--YHLSCIYEWMERS--PTCPVCSKVMVFDE 192 (194)
Q Consensus 141 ~~~C~ICle~~~~~~~~~~l~C~H~--FH~~CI~~Wl~~~--~tCPvCR~~v~~~~ 192 (194)
...|||=+..+. .+.+-..|.|. |-+.=+....++. -.||+|.+.+.+++
T Consensus 249 SL~CPlS~~ri~--~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~d 302 (371)
T 3i2d_A 249 SLQCPISYTRMK--YPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALEN 302 (371)
T ss_dssp ESBCTTTSSBCS--SEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGG
T ss_pred eecCCCcccccc--ccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHH
Confidence 357888777775 57777889998 7766555554443 36999999876654
No 88
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=79.67 E-value=1.6 Score=37.76 Aligned_cols=50 Identities=24% Similarity=0.490 Sum_probs=36.4
Q ss_pred CcccccccccccCCCCeEEecCCCe--ecHHHHHHHHHcC--CCCCcccccccCCC
Q 029389 141 EDVCPTCLEEYTLENPKIVTQCRHH--YHLSCIYEWMERS--PTCPVCSKVMVFDE 192 (194)
Q Consensus 141 ~~~C~ICle~~~~~~~~~~l~C~H~--FH~~CI~~Wl~~~--~tCPvCR~~v~~~~ 192 (194)
...|||=+..+. .+.+-..|.|. |-+.=+....++. -.||+|.+.+.+++
T Consensus 215 SL~CPlS~~ri~--~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~d 268 (360)
T 4fo9_A 215 SLMCPLGKMRLT--IPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYES 268 (360)
T ss_dssp ESBCTTTCSBCS--SEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGG
T ss_pred eeeCCCccceec--cCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHH
Confidence 346888877775 57777889998 7776655555444 36999999887654
No 89
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=78.92 E-value=1 Score=28.79 Aligned_cols=51 Identities=25% Similarity=0.545 Sum_probs=33.6
Q ss_pred CCCCcccccccccccC--CCCeEEecCCCeecHHHHHHHHH-------cCCCCCcccccc
Q 029389 138 PEDEDVCPTCLEEYTL--ENPKIVTQCRHHYHLSCIYEWME-------RSPTCPVCSKVM 188 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~--~~~~~~l~C~H~FH~~CI~~Wl~-------~~~tCPvCR~~v 188 (194)
..++..|.||...... +..+.--.|.-.||..|+..-|. ..-.|+.|+...
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 3567889999987543 22222236899999999886442 223588887544
No 90
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=77.81 E-value=0.38 Score=31.22 Aligned_cols=47 Identities=21% Similarity=0.555 Sum_probs=32.5
Q ss_pred CCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcC----CCCCccccc
Q 029389 138 PEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERS----PTCPVCSKV 187 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~----~tCPvCR~~ 187 (194)
...+..|.||.+. ++.+.--.|...||..|+..-|... -.||.|...
T Consensus 5 ~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 5 QKNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CSCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 3467889999964 3444444688999999998655322 259999654
No 91
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=76.78 E-value=4.5 Score=28.70 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=22.9
Q ss_pred CCccccccccccc------CCCCeEEecCCCeecHHHHH
Q 029389 140 DEDVCPTCLEEYT------LENPKIVTQCRHHYHLSCIY 172 (194)
Q Consensus 140 ~~~~C~ICle~~~------~~~~~~~l~C~H~FH~~CI~ 172 (194)
....|.+|+..-. .++.+.-..|+..||..||.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 4568999987521 12333444789999999995
No 92
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.72 E-value=0.26 Score=34.31 Aligned_cols=50 Identities=20% Similarity=0.443 Sum_probs=33.0
Q ss_pred CCCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHHc----CCCCCcccc
Q 029389 137 GPEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMER----SPTCPVCSK 186 (194)
Q Consensus 137 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~----~~tCPvCR~ 186 (194)
...+...|.||...-..+..+.--.|...||..|+..=|.. .=.||.|+.
T Consensus 12 ~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred hccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 33556789999976543333333468999999999754432 224999965
No 93
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=71.55 E-value=4.5 Score=30.33 Aligned_cols=47 Identities=19% Similarity=0.422 Sum_probs=32.7
Q ss_pred CCCCCcccccccccccCCCCeEEecCCCeecHHHHHHHHH-----------cCCCCCcccc
Q 029389 137 GPEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWME-----------RSPTCPVCSK 186 (194)
Q Consensus 137 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~-----------~~~tCPvCR~ 186 (194)
....++.|.||.+. ++.+---.|...||..||..-|. ..=.||+|+.
T Consensus 59 ~Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 59 SDGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TTSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 34557889999975 33333336899999999997652 1225999974
No 94
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=70.43 E-value=4.1 Score=26.26 Aligned_cols=35 Identities=20% Similarity=0.480 Sum_probs=23.9
Q ss_pred CCCCcccccccccccCCCCeEE-e-cCCCeecHHHHH
Q 029389 138 PEDEDVCPTCLEEYTLENPKIV-T-QCRHHYHLSCIY 172 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~~~~-l-~C~H~FH~~CI~ 172 (194)
.+....|++|...+..+...+. - .|.--||..|+.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 3456789999999876544443 2 688899999983
No 95
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=70.24 E-value=5.5 Score=26.08 Aligned_cols=50 Identities=20% Similarity=0.395 Sum_probs=31.3
Q ss_pred CCCCCcccccccccccC-CCCeE-EecCCCeecHHHHHHHH--HcCCCCCcccc
Q 029389 137 GPEDEDVCPTCLEEYTL-ENPKI-VTQCRHHYHLSCIYEWM--ERSPTCPVCSK 186 (194)
Q Consensus 137 ~~~~~~~C~ICle~~~~-~~~~~-~l~C~H~FH~~CI~~Wl--~~~~tCPvCR~ 186 (194)
...++..|.||.+.-.. ++.++ --.|.-.||..|+..-. +..=.||.|+.
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 44567889999876422 22222 23688999999997532 12225877754
No 96
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=69.77 E-value=1 Score=32.15 Aligned_cols=46 Identities=20% Similarity=0.546 Sum_probs=29.6
Q ss_pred Ccccccccccc-cCCCCeEEecCCCeecHHHHHHHHHcC----CCCCcccc
Q 029389 141 EDVCPTCLEEY-TLENPKIVTQCRHHYHLSCIYEWMERS----PTCPVCSK 186 (194)
Q Consensus 141 ~~~C~ICle~~-~~~~~~~~l~C~H~FH~~CI~~Wl~~~----~tCPvCR~ 186 (194)
-..|.||.+.- ..++.+.--.|...||..|+..-|... =.||.|+.
T Consensus 61 C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 61 CKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 34688888642 222333333689999999997655432 36999975
No 97
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=69.14 E-value=0.79 Score=31.53 Aligned_cols=53 Identities=17% Similarity=0.310 Sum_probs=32.8
Q ss_pred CCCCcccccccccccC-C-CCeEEecCCCeecHHHHHHHH--HcCCCCCcccccccC
Q 029389 138 PEDEDVCPTCLEEYTL-E-NPKIVTQCRHHYHLSCIYEWM--ERSPTCPVCSKVMVF 190 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~-~-~~~~~l~C~H~FH~~CI~~Wl--~~~~tCPvCR~~v~~ 190 (194)
.+++..|.||...-.. + +.+.--.|.-.||..|+..-+ +..-.||.|......
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 3567899999976321 1 122222588899999997533 122358888765433
No 98
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=68.43 E-value=1.9 Score=30.84 Aligned_cols=44 Identities=25% Similarity=0.564 Sum_probs=27.8
Q ss_pred CCCCCCcccccccccccCCCCeEEe---cCCCeecHHHHHHHHHcC----CCCCccc
Q 029389 136 LGPEDEDVCPTCLEEYTLENPKIVT---QCRHHYHLSCIYEWMERS----PTCPVCS 185 (194)
Q Consensus 136 ~~~~~~~~C~ICle~~~~~~~~~~l---~C~H~FH~~CI~~Wl~~~----~tCPvCR 185 (194)
....+++.|.+|.+. + .++.- .|...||..|+. |... -.||.|+
T Consensus 10 ~~~~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 10 PKQMHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp CCCSSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred CcCCCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCC
Confidence 444667889999842 2 23322 377899999997 5332 2477554
No 99
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.26 E-value=1 Score=30.24 Aligned_cols=45 Identities=20% Similarity=0.523 Sum_probs=28.7
Q ss_pred cccccccccccCCCCeEEecCCCeecHHHHHHHHHc-----CCCCCcccc
Q 029389 142 DVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMER-----SPTCPVCSK 186 (194)
Q Consensus 142 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~-----~~tCPvCR~ 186 (194)
..|.||...-..++.+.--.|...||..|+..=|.. .=.||.|..
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 378899864332333333368999999999854432 225888864
No 100
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=65.89 E-value=0.88 Score=29.90 Aligned_cols=45 Identities=18% Similarity=0.496 Sum_probs=26.5
Q ss_pred ccccccccccCCCCeEEecCCCeecHHHHHHHHHc-----CCCCCccccc
Q 029389 143 VCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMER-----SPTCPVCSKV 187 (194)
Q Consensus 143 ~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~-----~~tCPvCR~~ 187 (194)
.|.||...-..+..+.--.|...||..|+..=|.. .=.||.|+.+
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 56677653221222222258899999999854432 2258888753
No 101
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=62.94 E-value=0.72 Score=31.05 Aligned_cols=44 Identities=18% Similarity=0.520 Sum_probs=25.9
Q ss_pred ccccccccccCCCCeEEecCCCeecHHHHHHHHHcC-----CCCCcccc
Q 029389 143 VCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERS-----PTCPVCSK 186 (194)
Q Consensus 143 ~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~-----~tCPvCR~ 186 (194)
.|.||...-..+..+.--.|...||..|+..-|... =.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 466665543222222222588999999998655321 25888875
No 102
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=61.66 E-value=2.2 Score=29.73 Aligned_cols=46 Identities=17% Similarity=0.279 Sum_probs=29.3
Q ss_pred CCcccccccccccCCCCeEEecCCCeecHHHHHHHHHc---CCCCCcccc
Q 029389 140 DEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMER---SPTCPVCSK 186 (194)
Q Consensus 140 ~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~---~~tCPvCR~ 186 (194)
+...| ||-.....+.-+.--.|.--||..|+..=+.. .-.||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34557 88776553333333368899999998653322 246999974
No 103
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=61.16 E-value=13 Score=25.78 Aligned_cols=50 Identities=22% Similarity=0.457 Sum_probs=35.6
Q ss_pred CCcccccccccccC---CCCe-EEecCCCeecHHHHH-HHHHcCCCCCccccccc
Q 029389 140 DEDVCPTCLEEYTL---ENPK-IVTQCRHHYHLSCIY-EWMERSPTCPVCSKVMV 189 (194)
Q Consensus 140 ~~~~C~ICle~~~~---~~~~-~~l~C~H~FH~~CI~-~Wl~~~~tCPvCR~~v~ 189 (194)
....|.||-+++.. ++.. ..-.|+--.++.|.. ++-+.++.||.|+....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 45789999999754 2222 223578888999984 44477889999987653
No 104
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=60.37 E-value=8.6 Score=23.32 Aligned_cols=44 Identities=14% Similarity=0.291 Sum_probs=28.3
Q ss_pred cccccccccccCCCCeEE-e-cCCCeecHHHHHHHH----HcCCCCCccc
Q 029389 142 DVCPTCLEEYTLENPKIV-T-QCRHHYHLSCIYEWM----ERSPTCPVCS 185 (194)
Q Consensus 142 ~~C~ICle~~~~~~~~~~-l-~C~H~FH~~CI~~Wl----~~~~tCPvCR 185 (194)
-.|.||...+..+...+. - .|.-=||..|+.--. ..+..||.|+
T Consensus 3 c~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 3 CAAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CSCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred ccCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 357889888864433332 2 477789999985322 3556799885
No 105
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=59.33 E-value=3.2 Score=26.46 Aligned_cols=43 Identities=19% Similarity=0.484 Sum_probs=29.1
Q ss_pred cccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcc
Q 029389 142 DVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVC 184 (194)
Q Consensus 142 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvC 184 (194)
..|--|+..|.......-..|++.|+.+|=.---+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 3599999998632223345799999999944332445579887
No 106
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=56.90 E-value=9.9 Score=25.07 Aligned_cols=47 Identities=28% Similarity=0.523 Sum_probs=29.9
Q ss_pred CCcccccccccccCCCCeE-EecCCCeecHHHHHHHHH-----cCCCCCccccc
Q 029389 140 DEDVCPTCLEEYTLENPKI-VTQCRHHYHLSCIYEWME-----RSPTCPVCSKV 187 (194)
Q Consensus 140 ~~~~C~ICle~~~~~~~~~-~l~C~H~FH~~CI~~Wl~-----~~~tCPvCR~~ 187 (194)
+...| ||...+..+...+ --.|..=||..|+.--.. ....||.|+..
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 34456 9988875333322 235888999999953221 34579999864
No 107
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=56.85 E-value=2.9 Score=28.56 Aligned_cols=50 Identities=20% Similarity=0.405 Sum_probs=32.7
Q ss_pred CCcccccccccccCC-CCeEE-ecCCCeecHHHHHHHHHc--------CCCCCccccccc
Q 029389 140 DEDVCPTCLEEYTLE-NPKIV-TQCRHHYHLSCIYEWMER--------SPTCPVCSKVMV 189 (194)
Q Consensus 140 ~~~~C~ICle~~~~~-~~~~~-l~C~H~FH~~CI~~Wl~~--------~~tCPvCR~~v~ 189 (194)
.+..|.||...-... +.++. -.|...||..|+..-|.. .-.|+.|+....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 356899999864321 22222 268999999999875532 235999876443
No 108
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=54.82 E-value=12 Score=27.56 Aligned_cols=48 Identities=19% Similarity=0.371 Sum_probs=31.5
Q ss_pred CCCCCCcccccccccccCCCCeEEecCCCeecHHHHHHHH------Hc-----CCCCCcccc
Q 029389 136 LGPEDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWM------ER-----SPTCPVCSK 186 (194)
Q Consensus 136 ~~~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl------~~-----~~tCPvCR~ 186 (194)
.....+..|.||.+. ++.+---.|-..||..||..-+ +. .=.|++|+-
T Consensus 52 d~Dg~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 52 DSDGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CTTSCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 334556789999975 2222223588999999999752 21 136999964
No 109
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=54.49 E-value=0.67 Score=33.29 Aligned_cols=48 Identities=17% Similarity=0.452 Sum_probs=30.5
Q ss_pred cccccccccccCCCCeEEecCCCeecHHHHHHHHHcC----CCCCccccccc
Q 029389 142 DVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERS----PTCPVCSKVMV 189 (194)
Q Consensus 142 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~----~tCPvCR~~v~ 189 (194)
..|.||...-..+..+.--.|...||..|+..=|... -.||.|+..+.
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred CccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 3688887754333333334689999999998544322 24888876543
No 110
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=54.19 E-value=5.1 Score=26.25 Aligned_cols=46 Identities=17% Similarity=0.379 Sum_probs=29.0
Q ss_pred CcccccccccccCCCCeEEecCCCeecHHHHHHHH---------HcCCCCCccccc
Q 029389 141 EDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWM---------ERSPTCPVCSKV 187 (194)
Q Consensus 141 ~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl---------~~~~tCPvCR~~ 187 (194)
...| ||...+..+.-+.--.|..=||..|+.--. .....||.|+..
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 4556 898876522222223588899999994211 246689999754
No 111
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=53.38 E-value=38 Score=23.00 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=28.1
Q ss_pred CCCcccccccccccCCCCeEEec-CCCeecHHHHHHHHHc
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQ-CRHHYHLSCIYEWMER 177 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~-C~H~FH~~CI~~Wl~~ 177 (194)
.....|.+|.|.++...-+.... =.|.|+..|-...+++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 45678999999987543332111 2799999999999964
No 112
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=52.04 E-value=4.9 Score=26.33 Aligned_cols=46 Identities=20% Similarity=0.506 Sum_probs=27.3
Q ss_pred CCCcccccccccccCCCCeEEec--CC-CeecHHHHHHHHHc----CCCCCcccccc
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQ--CR-HHYHLSCIYEWMER----SPTCPVCSKVM 188 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~--C~-H~FH~~CI~~Wl~~----~~tCPvCR~~v 188 (194)
.+...| ||..... +.-+.--. |. .-||..||. |.. .-.||.|+...
T Consensus 14 ~~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 345567 8987643 22111113 54 589999997 432 23699997654
No 113
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=51.70 E-value=3.6 Score=33.24 Aligned_cols=46 Identities=17% Similarity=0.462 Sum_probs=26.0
Q ss_pred cccccccccccCCCCeEEecCCCeecHHHHHHHHHc-----CCCCCccccc
Q 029389 142 DVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMER-----SPTCPVCSKV 187 (194)
Q Consensus 142 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~-----~~tCPvCR~~ 187 (194)
..|.||...=..+..+.--.|...||..|+..=|.. .=.||.|+..
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 368888764332333333468999999999854432 2259999753
No 114
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=50.35 E-value=5.6 Score=27.49 Aligned_cols=46 Identities=20% Similarity=0.506 Sum_probs=27.6
Q ss_pred CCCcccccccccccCCCCeEEec--CC-CeecHHHHHHHHHc----CCCCCcccccc
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQ--CR-HHYHLSCIYEWMER----SPTCPVCSKVM 188 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~--C~-H~FH~~CI~~Wl~~----~~tCPvCR~~v 188 (194)
.+...| ||..... +.-+.--. |. .-||..||. |.. +-.||.|+...
T Consensus 34 ~e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 344567 9988653 22111123 44 569999997 432 34699998654
No 115
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=49.08 E-value=4.1 Score=23.03 Aligned_cols=13 Identities=23% Similarity=0.876 Sum_probs=10.1
Q ss_pred CCccccccccccc
Q 029389 140 DEDVCPTCLEEYT 152 (194)
Q Consensus 140 ~~~~C~ICle~~~ 152 (194)
+...||||+..+.
T Consensus 4 EGFiCP~C~~~l~ 16 (34)
T 3mjh_B 4 EGFICPQCMKSLG 16 (34)
T ss_dssp EEEECTTTCCEES
T ss_pred cccCCcHHHHHcC
Confidence 4578999988876
No 116
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=47.19 E-value=2.6 Score=29.69 Aligned_cols=45 Identities=22% Similarity=0.492 Sum_probs=27.9
Q ss_pred ccccccccccCCCCeEEecCCCeecHHHHHHHHHc----CCCCCccccc
Q 029389 143 VCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMER----SPTCPVCSKV 187 (194)
Q Consensus 143 ~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~----~~tCPvCR~~ 187 (194)
.|.||...-.....+.--.|...||..|+..=|.. .-.||.|+..
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 57777765332223333368999999999865432 2358888653
No 117
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=46.33 E-value=9.3 Score=26.84 Aligned_cols=48 Identities=21% Similarity=0.394 Sum_probs=32.4
Q ss_pred CcccccccccccCCCCeEEe--cCCCeecHHHHHHHH----H------cCCCCCcccccc
Q 029389 141 EDVCPTCLEEYTLENPKIVT--QCRHHYHLSCIYEWM----E------RSPTCPVCSKVM 188 (194)
Q Consensus 141 ~~~C~ICle~~~~~~~~~~l--~C~H~FH~~CI~~Wl----~------~~~tCPvCR~~v 188 (194)
...|.||...|..+...+.- .|.-=||..|+.--. . ..-.||.|+...
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 35799999998654443333 578899999984211 0 345799997643
No 118
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=43.94 E-value=8.9 Score=28.30 Aligned_cols=34 Identities=15% Similarity=0.430 Sum_probs=25.2
Q ss_pred CCCcccccccccccC-CC-CeEEecCCCeecHHHHH
Q 029389 139 EDEDVCPTCLEEYTL-EN-PKIVTQCRHHYHLSCIY 172 (194)
Q Consensus 139 ~~~~~C~ICle~~~~-~~-~~~~l~C~H~FH~~CI~ 172 (194)
..+..|.+|...|.. ++ ...-..|.|.+|..|=.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 567899999999942 33 33445799999998854
No 119
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=43.55 E-value=19 Score=23.99 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=26.4
Q ss_pred CCCcccccccccccCCCCe-EEecCCCeecHHHHHHH
Q 029389 139 EDEDVCPTCLEEYTLENPK-IVTQCRHHYHLSCIYEW 174 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~-~~l~C~H~FH~~CI~~W 174 (194)
.+...|.+|...|..-... ---.||++|+..|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 4556899999999854322 23469999999997654
No 120
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=43.20 E-value=17 Score=24.55 Aligned_cols=37 Identities=19% Similarity=0.341 Sum_probs=25.9
Q ss_pred CCCCcccccccccccCCCCe-EEecCCCeecHHHHHHH
Q 029389 138 PEDEDVCPTCLEEYTLENPK-IVTQCRHHYHLSCIYEW 174 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~~-~~l~C~H~FH~~CI~~W 174 (194)
..+...|.+|...|..-... ---.||.+|+..|....
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 34556899999999854322 22368999999987553
No 121
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.77 E-value=21 Score=23.25 Aligned_cols=40 Identities=25% Similarity=0.626 Sum_probs=27.1
Q ss_pred CCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCccccccc
Q 029389 140 DEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 140 ~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
....|..|-+.+..++.+.. =+..||..| ..|-.|++.|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a--~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA--LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE--TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE--CCccccccc--------CCcCcCCCCcC
Confidence 45679999988875544333 467888877 34777777664
No 122
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=42.10 E-value=13 Score=28.02 Aligned_cols=33 Identities=27% Similarity=0.603 Sum_probs=25.6
Q ss_pred CCCcccccccccccC--CCCeEEecCCCeecHHHH
Q 029389 139 EDEDVCPTCLEEYTL--ENPKIVTQCRHHYHLSCI 171 (194)
Q Consensus 139 ~~~~~C~ICle~~~~--~~~~~~l~C~H~FH~~CI 171 (194)
..+..|.+|+..|.. +....-..|.|.+|..|=
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 467899999998754 344455679999999996
No 123
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=41.26 E-value=7.6 Score=29.31 Aligned_cols=47 Identities=21% Similarity=0.468 Sum_probs=29.9
Q ss_pred CCCcccccccccccCCCCeE-EecCCCeecHHHHHHHH-----HcCCCCCcccc
Q 029389 139 EDEDVCPTCLEEYTLENPKI-VTQCRHHYHLSCIYEWM-----ERSPTCPVCSK 186 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~-~l~C~H~FH~~CI~~Wl-----~~~~tCPvCR~ 186 (194)
++...| ||...+..+...+ .-.|..-||..|+.--. ...-.||.|+.
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 455678 9998765333222 23588899999995322 12457999975
No 124
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.45 E-value=20 Score=22.75 Aligned_cols=39 Identities=23% Similarity=0.578 Sum_probs=25.8
Q ss_pred CcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCccccccc
Q 029389 141 EDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 141 ~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
...|..|-+.+..++.+ ..-+..||..| ..|-.|++.|.
T Consensus 9 ~~~C~~C~~~I~~~~~v--~a~~~~~H~~C--------F~C~~C~~~L~ 47 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKV--SSLGKDWHKFC--------LKCERCSKTLT 47 (76)
T ss_dssp CCBCTTTCCBCCTTTEE--EETTEEEETTT--------CBCSSSCCBCC
T ss_pred CCCCcCCCCEeECCeEE--EECCeEeeCCC--------CCCCCCCCccC
Confidence 45788888888754433 23467888776 34777777665
No 125
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=40.45 E-value=18 Score=23.97 Aligned_cols=36 Identities=19% Similarity=0.547 Sum_probs=25.8
Q ss_pred CCCcccccccccccCCCCe-EEecCCCeecHHHHHHH
Q 029389 139 EDEDVCPTCLEEYTLENPK-IVTQCRHHYHLSCIYEW 174 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~-~~l~C~H~FH~~CI~~W 174 (194)
.+...|.+|...|...... ---.||.+|+..|....
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 3456899999999853322 23469999999997654
No 126
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=39.96 E-value=12 Score=23.93 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=23.4
Q ss_pred CCcccccccccccCCCCeEEecCCCeecH-HHHHHHHHcCCCCCccccc
Q 029389 140 DEDVCPTCLEEYTLENPKIVTQCRHHYHL-SCIYEWMERSPTCPVCSKV 187 (194)
Q Consensus 140 ~~~~C~ICle~~~~~~~~~~l~C~H~FH~-~CI~~Wl~~~~tCPvCR~~ 187 (194)
+-..|..|...+..+. -...=+..|+. .|..+ .-...|-.|...
T Consensus 26 ~CF~C~~C~~~L~~~~--~~~~~g~~yC~~~cy~~--~f~~~C~~C~~~ 70 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGG--HAEHEGKPYCNHPCYSA--MFGPKGFGRGGA 70 (76)
T ss_dssp TTCBCTTTCCBCCTTT--EEEETTEEEETTTHHHH--HSSCCCSSCCCS
T ss_pred CCCCccccCccCCCCc--eECcCCeEeeCHHHHHH--HhCccCCCcCCc
Confidence 4567777777765432 11223556666 46543 233457777544
No 127
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.74 E-value=26 Score=22.73 Aligned_cols=40 Identities=25% Similarity=0.526 Sum_probs=24.8
Q ss_pred CCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCccccccc
Q 029389 140 DEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 140 ~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
....|..|-+.+...+.+. .=+..||..| ..|-.|++.|.
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a~~~~wH~~C--------F~C~~C~~~L~ 53 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--VNGHFFHRSC--------FRCHTCEATLW 53 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--BTTBCCBTTT--------CBCSSSCCBCC
T ss_pred CCCCCcccCCCcccceEEE--ECCCeeCCCc--------CEEcCCCCCcC
Confidence 4567888888875443332 3467788777 34666665543
No 128
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=39.63 E-value=18 Score=23.50 Aligned_cols=32 Identities=22% Similarity=0.423 Sum_probs=24.7
Q ss_pred CCCCcccccccccccCCCCeEEecC-CCeecHHHHHH
Q 029389 138 PEDEDVCPTCLEEYTLENPKIVTQC-RHHYHLSCIYE 173 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~~~~l~C-~H~FH~~CI~~ 173 (194)
.++..-|.||.++ ..++-+.| +-+|+..|..+
T Consensus 5 ~ee~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE 37 (67)
T 2d8v_A 5 SSGLPWCCICNED----ATLRCAGCDGDLYCARCFRE 37 (67)
T ss_dssp CCCCSSCTTTCSC----CCEEETTTTSEEECSSHHHH
T ss_pred CcCCCeeEEeCCC----CeEEecCCCCceehHHHHHH
Confidence 4556789999998 24677788 78999999655
No 129
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=39.29 E-value=19 Score=24.45 Aligned_cols=36 Identities=14% Similarity=0.358 Sum_probs=26.3
Q ss_pred CCcccccccccccCCCC-eEEecCCCeecHHHHHHHH
Q 029389 140 DEDVCPTCLEEYTLENP-KIVTQCRHHYHLSCIYEWM 175 (194)
Q Consensus 140 ~~~~C~ICle~~~~~~~-~~~l~C~H~FH~~CI~~Wl 175 (194)
+...|.+|...|..-.. ..--.||++|+..|...++
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 45679999999975332 3334699999999976654
No 130
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.90 E-value=33 Score=21.59 Aligned_cols=41 Identities=17% Similarity=0.464 Sum_probs=24.8
Q ss_pred CCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCccccccc
Q 029389 140 DEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 140 ~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
....|..|-+.+...+.++ ..-+..||..| ..|-.|++.|.
T Consensus 10 ~~~~C~~C~~~I~~~~~~~-~a~~~~~H~~C--------F~C~~C~~~L~ 50 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIV-NSNGELYHEQC--------FVCAQCFQQFP 50 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCE-EETTEEECTTT--------CCCTTTCCCCG
T ss_pred CCCCchhcCCccCCCceEE-EeCccEecccc--------CeECCCCCCCC
Confidence 3467888888876433322 22466788766 34666766554
No 131
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=37.95 E-value=3.8 Score=25.89 Aligned_cols=40 Identities=23% Similarity=0.640 Sum_probs=24.6
Q ss_pred CCcccccccccccCCCCeEEec-----CC-CeecHHHHHHHHHc----CCCCCcccc
Q 029389 140 DEDVCPTCLEEYTLENPKIVTQ-----CR-HHYHLSCIYEWMER----SPTCPVCSK 186 (194)
Q Consensus 140 ~~~~C~ICle~~~~~~~~~~l~-----C~-H~FH~~CI~~Wl~~----~~tCPvCR~ 186 (194)
+...| ||..... + .++. |. .-||..||. |.. .-.||.|++
T Consensus 9 e~~~C-~C~~~~~-g---~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-G---EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-S---EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-C---CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34456 8987642 2 2333 44 579999997 432 235888864
No 132
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=37.41 E-value=14 Score=26.03 Aligned_cols=12 Identities=17% Similarity=0.800 Sum_probs=10.7
Q ss_pred eecHHHHHHHHH
Q 029389 165 HYHLSCIYEWME 176 (194)
Q Consensus 165 ~FH~~CI~~Wl~ 176 (194)
-||+.|+..|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999994
No 133
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=37.31 E-value=14 Score=25.97 Aligned_cols=12 Identities=17% Similarity=0.866 Sum_probs=10.7
Q ss_pred eecHHHHHHHHH
Q 029389 165 HYHLSCIYEWME 176 (194)
Q Consensus 165 ~FH~~CI~~Wl~ 176 (194)
-||+.||..|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999995
No 134
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=37.17 E-value=7.4 Score=25.47 Aligned_cols=19 Identities=16% Similarity=0.476 Sum_probs=11.1
Q ss_pred HHHHcCCCCCcccccccCC
Q 029389 173 EWMERSPTCPVCSKVMVFD 191 (194)
Q Consensus 173 ~Wl~~~~tCPvCR~~v~~~ 191 (194)
.||..--.||+|+..+.++
T Consensus 3 ~~LLeiL~CP~ck~~L~~~ 21 (69)
T 2pk7_A 3 TKLLDILACPICKGPLKLS 21 (69)
T ss_dssp CCGGGTCCCTTTCCCCEEC
T ss_pred hHHHhheeCCCCCCcCeEe
Confidence 4455555677777666543
No 135
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.11 E-value=22 Score=23.67 Aligned_cols=36 Identities=11% Similarity=0.371 Sum_probs=25.4
Q ss_pred CCCcccccccccccCCCC-eEEecCCCeecHHHHHHH
Q 029389 139 EDEDVCPTCLEEYTLENP-KIVTQCRHHYHLSCIYEW 174 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~-~~~l~C~H~FH~~CI~~W 174 (194)
.+...|.+|...|..-.. .---.||.+|+..|....
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 345689999999975332 233469999999996543
No 136
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=36.57 E-value=10 Score=26.65 Aligned_cols=39 Identities=23% Similarity=0.549 Sum_probs=24.0
Q ss_pred cccccccccccCCCCeE-EecCCCeecHHHHHHHHHcCCCCCccccccc
Q 029389 142 DVCPTCLEEYTLENPKI-VTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 142 ~~C~ICle~~~~~~~~~-~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
..||+|..++....... --.|.-.| +....||-|.++|.
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~f---------~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEFI---------EMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCEE---------EEEEECTTTCSBCE
T ss_pred ccCccCCCcceecCCEEECccccchh---------hccccCcchhhHHH
Confidence 78999998876432222 22343332 44556999988875
No 137
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=36.12 E-value=9.4 Score=20.20 Aligned_cols=10 Identities=50% Similarity=1.324 Sum_probs=6.8
Q ss_pred CCCccccccc
Q 029389 180 TCPVCSKVMV 189 (194)
Q Consensus 180 tCPvCR~~v~ 189 (194)
.||+|.+.|+
T Consensus 8 qcpvcqq~mp 17 (29)
T 3vhs_A 8 QCPVCQQMMP 17 (29)
T ss_dssp ECTTTCCEEE
T ss_pred eChHHHHhCc
Confidence 4788877664
No 138
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=35.70 E-value=22 Score=25.68 Aligned_cols=35 Identities=14% Similarity=0.384 Sum_probs=25.3
Q ss_pred CCcccccccccccCCCC-eEEecCCCeecHHHHHHH
Q 029389 140 DEDVCPTCLEEYTLENP-KIVTQCRHHYHLSCIYEW 174 (194)
Q Consensus 140 ~~~~C~ICle~~~~~~~-~~~l~C~H~FH~~CI~~W 174 (194)
+...|.+|...|..... ..--.||++|+..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 34689999999975332 233469999999996544
No 139
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=35.56 E-value=23 Score=22.86 Aligned_cols=32 Identities=19% Similarity=0.414 Sum_probs=23.4
Q ss_pred cccccccccccCCCC-eEEecCCCeecHHHHHH
Q 029389 142 DVCPTCLEEYTLENP-KIVTQCRHHYHLSCIYE 173 (194)
Q Consensus 142 ~~C~ICle~~~~~~~-~~~l~C~H~FH~~CI~~ 173 (194)
..|.+|...|..-.. .---.||.+|+..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 589999999975322 22346999999999654
No 140
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=35.16 E-value=7.9 Score=20.87 Aligned_cols=12 Identities=25% Similarity=0.395 Sum_probs=8.4
Q ss_pred CCCCcccccccC
Q 029389 179 PTCPVCSKVMVF 190 (194)
Q Consensus 179 ~tCPvCR~~v~~ 190 (194)
.+||+|+..++.
T Consensus 4 ~~CpvCk~q~Pd 15 (28)
T 2jvx_A 4 FCCPKCQYQAPD 15 (28)
T ss_dssp EECTTSSCEESS
T ss_pred ccCccccccCcC
Confidence 468888876653
No 141
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=34.17 E-value=4.9 Score=25.31 Aligned_cols=43 Identities=19% Similarity=0.539 Sum_probs=25.1
Q ss_pred CCcccccccccccCCCCeEEec--CC-CeecHHHHHHHHHc----CCCCCcccc
Q 029389 140 DEDVCPTCLEEYTLENPKIVTQ--CR-HHYHLSCIYEWMER----SPTCPVCSK 186 (194)
Q Consensus 140 ~~~~C~ICle~~~~~~~~~~l~--C~-H~FH~~CI~~Wl~~----~~tCPvCR~ 186 (194)
+..-| ||..... +.-+.--. |. .-||..|+. |.. +-.||.|++
T Consensus 8 e~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 44556 9987642 21111113 55 589999997 432 235888864
No 142
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.81 E-value=49 Score=20.45 Aligned_cols=10 Identities=30% Similarity=0.594 Sum_probs=4.5
Q ss_pred cccccccccc
Q 029389 143 VCPTCLEEYT 152 (194)
Q Consensus 143 ~C~ICle~~~ 152 (194)
.|..|-+.+.
T Consensus 7 ~C~~C~~~I~ 16 (72)
T 1x61_A 7 GCGGCGEDVV 16 (72)
T ss_dssp CCSSSCSCCC
T ss_pred CCccCCCccC
Confidence 4444444443
No 143
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=33.39 E-value=62 Score=21.09 Aligned_cols=38 Identities=18% Similarity=0.363 Sum_probs=20.3
Q ss_pred CcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCccccccc
Q 029389 141 EDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 141 ~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
...|..|-+.+.. . .+..-+..||.+| ..|-.|++.|.
T Consensus 25 ~~~C~~C~~~I~~-~--~~~a~~~~~H~~C--------F~C~~C~~~L~ 62 (89)
T 1x64_A 25 MPLCDKCGSGIVG-A--VVKARDKYRHPEC--------FVCADCNLNLK 62 (89)
T ss_dssp CCBCTTTCCBCCS-C--CEESSSCEECTTT--------CCCSSSCCCTT
T ss_pred CCCcccCCCEecc-c--EEEECCceECccC--------CEecCCCCCCC
Confidence 3457777766652 1 1223456666665 23666665553
No 144
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=33.36 E-value=3.8 Score=29.84 Aligned_cols=47 Identities=15% Similarity=0.480 Sum_probs=28.8
Q ss_pred CCCcccccccccccCCC-CeEEecCCCeecHHHHHHHHHcCCCCCccc
Q 029389 139 EDEDVCPTCLEEYTLEN-PKIVTQCRHHYHLSCIYEWMERSPTCPVCS 185 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~-~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR 185 (194)
.+...|.+|...|..-. ...--.||.+|+..|....+.....|-.|-
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~ 64 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQ 64 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHH
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHH
Confidence 34568999999997532 223346999999999776655455565553
No 145
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.05 E-value=43 Score=21.36 Aligned_cols=40 Identities=20% Similarity=0.555 Sum_probs=24.7
Q ss_pred CcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCccccccc
Q 029389 141 EDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 141 ~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
...|..|-+.+..++..+ ..=+..||..|. +|-.|++.|.
T Consensus 15 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~ 54 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNV-EYKGTVWHKDCF--------TCSNCKQVIG 54 (82)
T ss_dssp SCBCSSSCCBCCSSSCEE-ECSSCEEETTTC--------CCSSSCCCCT
T ss_pred CCcCccCCcccccCceEE-EECccccccccC--------chhhCCCccC
Confidence 357888888776544332 234677887663 4777766654
No 146
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.90 E-value=31 Score=22.68 Aligned_cols=39 Identities=15% Similarity=0.439 Sum_probs=24.7
Q ss_pred CCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCccccccc
Q 029389 140 DEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 140 ~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
....|..|-+.+. ++ .+..-+..||..|+ .|-.|++.|.
T Consensus 24 ~~~~C~~C~~~I~-~~--~v~a~~~~~H~~CF--------~C~~C~~~L~ 62 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GP--FLVALGKSWHPEEF--------NCAHCKNTMA 62 (90)
T ss_dssp CCCBBSSSCCBCC-SC--EEEETTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCccCCCEec-ce--EEEECCccccccCC--------ccCCCCCCCC
Confidence 4467888888874 22 22345778887763 4777776654
No 147
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=30.69 E-value=14 Score=19.96 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=17.8
Q ss_pred cccccccccccCCCCeEEecCCCeecHHH
Q 029389 142 DVCPTCLEEYTLENPKIVTQCRHHYHLSC 170 (194)
Q Consensus 142 ~~C~ICle~~~~~~~~~~l~C~H~FH~~C 170 (194)
..|+.|-..+-..+.+. .=+..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--CLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--SSSSCCCGGG
T ss_pred CcCCccCCEEecceeEE--ECCeEecccC
Confidence 46888888775433322 2477888877
No 148
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.10 E-value=53 Score=20.35 Aligned_cols=40 Identities=20% Similarity=0.512 Sum_probs=24.0
Q ss_pred CcccccccccccC--CCCeEEecCCCeecHHHHHHHHHcCCCCCccccccc
Q 029389 141 EDVCPTCLEEYTL--ENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 141 ~~~C~ICle~~~~--~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
...|..|-+.+.. +.. .+..-+..||..|. .|-.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTK-YISFEERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCS-CEECSSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcc-eEEECCcccCcccC--------EeccCCCcCC
Confidence 4568888877763 222 22335677887763 4677766654
No 149
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=29.89 E-value=9.8 Score=27.05 Aligned_cols=29 Identities=14% Similarity=0.382 Sum_probs=18.6
Q ss_pred eEEecCCCeecHHHHHHHHHcCCCCCcccccccC
Q 029389 157 KIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVF 190 (194)
Q Consensus 157 ~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~ 190 (194)
.....||+.| ..-+.....||.|+.+.+.
T Consensus 68 ~~C~~CG~~F-----~~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 68 AQCRKCGFVF-----KAEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp CBBTTTCCBC-----CCCSSCCSSCSSSCCCCBC
T ss_pred cChhhCcCee-----cccCCCCCCCcCCCCCccC
Confidence 3445689998 1122344679999987654
No 150
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.59 E-value=51 Score=20.32 Aligned_cols=39 Identities=18% Similarity=0.421 Sum_probs=20.0
Q ss_pred cccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCccccccc
Q 029389 142 DVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 142 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
..|..|-+.+...+. .+..-+..||..|. +|-.|++.|.
T Consensus 6 ~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1wyh_A 6 SGCSACGETVMPGSR-KLEYGGQTWHEHCF--------LCSGCEQPLG 44 (72)
T ss_dssp CBCSSSCCBCCSSSC-EECSTTCCEETTTC--------BCTTTCCBTT
T ss_pred CCCccCCCccccCcc-EEEECccccCcccC--------eECCCCCcCC
Confidence 456667666653222 22224566666552 3555655543
No 151
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=29.01 E-value=6.8 Score=25.51 Aligned_cols=17 Identities=12% Similarity=0.243 Sum_probs=8.3
Q ss_pred HHHcCCCCCcccccccC
Q 029389 174 WMERSPTCPVCSKVMVF 190 (194)
Q Consensus 174 Wl~~~~tCPvCR~~v~~ 190 (194)
||..--.||+|+.++.+
T Consensus 6 ~LLeiL~CP~ck~~L~~ 22 (67)
T 2jny_A 6 QLLEVLACPKDKGPLRY 22 (67)
T ss_dssp GGTCCCBCTTTCCBCEE
T ss_pred HHHHHhCCCCCCCcCeE
Confidence 44444455555555443
No 152
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=28.92 E-value=4.1 Score=25.56 Aligned_cols=9 Identities=33% Similarity=1.172 Sum_probs=4.3
Q ss_pred CCCcccccc
Q 029389 180 TCPVCSKVM 188 (194)
Q Consensus 180 tCPvCR~~v 188 (194)
.||+|+..+
T Consensus 12 ~CP~c~~~L 20 (56)
T 2kpi_A 12 ACPACHAPL 20 (56)
T ss_dssp CCSSSCSCE
T ss_pred eCCCCCCcc
Confidence 455555443
No 153
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.46 E-value=48 Score=20.47 Aligned_cols=39 Identities=18% Similarity=0.458 Sum_probs=22.4
Q ss_pred cccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCccccccc
Q 029389 142 DVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 142 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
..|..|-+.+...+..+ ..=+..||..|. .|-.|++.|.
T Consensus 6 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKM-EYKGSSWHETCF--------ICHRCQQPIG 44 (72)
T ss_dssp CCBSSSCCCCCSSSCEE-EETTEEEETTTT--------CCSSSCCCCC
T ss_pred CCCccCCCcccCCceEE-EECcCeecccCC--------cccccCCccC
Confidence 46777777776433222 224667776663 4666666554
No 154
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.09 E-value=46 Score=21.21 Aligned_cols=38 Identities=21% Similarity=0.436 Sum_probs=25.1
Q ss_pred CCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccccc
Q 029389 140 DEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVM 188 (194)
Q Consensus 140 ~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v 188 (194)
....|..|-+.+.. + .+..-+..||..|. +|-.|++.|
T Consensus 14 ~~~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L 51 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-V--FVKLRDRHRHPECY--------VCTDCGTNL 51 (79)
T ss_dssp CCCCCSSSCCCCCS-S--CEECSSCEECTTTT--------SCSSSCCCH
T ss_pred CCCccccCCCCccC-c--EEEECcceeCcCcC--------eeCCCCCCC
Confidence 35678888888773 2 23345778888774 477776655
No 155
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=27.85 E-value=38 Score=25.70 Aligned_cols=38 Identities=11% Similarity=0.326 Sum_probs=25.8
Q ss_pred CCCCCCcccccccccccCCCCeEE-e--cCCCeecHHHHHHHHHc
Q 029389 136 LGPEDEDVCPTCLEEYTLENPKIV-T--QCRHHYHLSCIYEWMER 177 (194)
Q Consensus 136 ~~~~~~~~C~ICle~~~~~~~~~~-l--~C~H~FH~~CI~~Wl~~ 177 (194)
.....+..|.||-+. ..+.. - .|...|+..||..++-+
T Consensus 74 DeDG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 74 DDDGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp CTTSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CCCCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 334456788888864 22222 2 48899999999998843
No 156
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=27.67 E-value=27 Score=27.34 Aligned_cols=34 Identities=24% Similarity=0.504 Sum_probs=24.8
Q ss_pred CcccccccccccCCCC-eEEecCCCeecHHHHHHH
Q 029389 141 EDVCPTCLEEYTLENP-KIVTQCRHHYHLSCIYEW 174 (194)
Q Consensus 141 ~~~C~ICle~~~~~~~-~~~l~C~H~FH~~CI~~W 174 (194)
...|.+|...|..-.. ..--.||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 4689999999975332 233469999999996543
No 157
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=26.26 E-value=36 Score=20.87 Aligned_cols=41 Identities=17% Similarity=0.503 Sum_probs=27.1
Q ss_pred CCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCccccccc
Q 029389 140 DEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 140 ~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
....|..|-+.+...+.++ ..=+..||..|. .|-.|++.|.
T Consensus 10 ~~~~C~~C~~~i~~~e~~~-~~~~~~~H~~CF--------~C~~C~~~L~ 50 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIV-NSNGELYHEQCF--------VCAQCFQQFP 50 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEE-EETTEEEETTTS--------SCTTTCCCCG
T ss_pred CCccchhcCccccCCceEE-EeCcCeeCcCCC--------cccCCCCCCC
Confidence 3457999998887544332 235677888774 4777777664
No 158
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=25.72 E-value=31 Score=27.30 Aligned_cols=35 Identities=11% Similarity=0.403 Sum_probs=25.6
Q ss_pred CcccccccccccCCCC-eEEecCCCeecHHHHHHHH
Q 029389 141 EDVCPTCLEEYTLENP-KIVTQCRHHYHLSCIYEWM 175 (194)
Q Consensus 141 ~~~C~ICle~~~~~~~-~~~l~C~H~FH~~CI~~Wl 175 (194)
...|.+|...|..-.. ..--.||++||..|-..++
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~ 199 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYS 199 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcc
Confidence 4689999999985332 2334699999999976543
No 159
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.70 E-value=59 Score=20.42 Aligned_cols=41 Identities=22% Similarity=0.520 Sum_probs=26.1
Q ss_pred CcccccccccccC-CCCeEEecCCCeecHHHHHHHHHcCCCCCccccccc
Q 029389 141 EDVCPTCLEEYTL-ENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 141 ~~~C~ICle~~~~-~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
...|..|-+.+.. +....+..-+..||.+|. .|-.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeEEECCcccCcccC--------ChhhCCCcCC
Confidence 3578888888874 111233345778888873 4777776664
No 160
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=24.79 E-value=49 Score=21.04 Aligned_cols=50 Identities=20% Similarity=0.414 Sum_probs=31.0
Q ss_pred CCCCCccccccccc-ccCCCCeEEecCCCeecHHHHHHHHHcCC----CCCcccc
Q 029389 137 GPEDEDVCPTCLEE-YTLENPKIVTQCRHHYHLSCIYEWMERSP----TCPVCSK 186 (194)
Q Consensus 137 ~~~~~~~C~ICle~-~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~----tCPvCR~ 186 (194)
...+..+|.||+.. |.++-...-.-|.-.|+..|=..|-.+++ .|-+||+
T Consensus 5 ~~~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 5 QKGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp CSSCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred ccCCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 34567899999965 55555555556777777777555442222 2555554
No 161
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=24.64 E-value=60 Score=28.14 Aligned_cols=36 Identities=19% Similarity=0.494 Sum_probs=25.9
Q ss_pred CCCCCcccccccccccCCCCeEEe--cCCCeecHHHHHHHH
Q 029389 137 GPEDEDVCPTCLEEYTLENPKIVT--QCRHHYHLSCIYEWM 175 (194)
Q Consensus 137 ~~~~~~~C~ICle~~~~~~~~~~l--~C~H~FH~~CI~~Wl 175 (194)
....+..|.||-+. ++.+.-- .|...||..||..++
T Consensus 89 ~DG~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~ 126 (386)
T 2pv0_B 89 DDGYQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLV 126 (386)
T ss_dssp SSSSBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHT
T ss_pred CCCCcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhc
Confidence 34456678888865 2333333 688999999999998
No 162
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=23.99 E-value=40 Score=23.63 Aligned_cols=37 Identities=16% Similarity=0.345 Sum_probs=19.6
Q ss_pred CCCcccccccccccCCCCeEEecCCCeecHHHHHHHHH
Q 029389 139 EDEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWME 176 (194)
Q Consensus 139 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~ 176 (194)
.+-..|.+|-..+..++.. ...=+..||..|..+.+.
T Consensus 34 ~~CF~C~~C~~~L~~g~~f-~~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 34 LECFKCAACQKHFSVGDRY-LLINSDIVCEQDIYEWTK 70 (123)
T ss_dssp TTTCBCTTTCCBCCTTCEE-EECSSSEEEGGGHHHHHH
T ss_pred cccCccccCCCCCCCCCcE-EeeCCEEEcHHHhHHHhc
Confidence 3455667776666433222 222355666666666553
No 163
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.33 E-value=46 Score=20.54 Aligned_cols=38 Identities=21% Similarity=0.584 Sum_probs=19.7
Q ss_pred CcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCccccccc
Q 029389 141 EDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 141 ~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
...|..|-+.+. +.. +..-+..||.+|+ .|-.|++.|.
T Consensus 5 ~~~C~~C~~~I~-~~~--~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8x_A 5 SSGCHQCGEFII-GRV--IKAMNNSWHPECF--------RCDLCQEVLA 42 (70)
T ss_dssp SSBCSSSCCBCC-SCC--EEETTEEECTTTS--------BCSSSCCBCS
T ss_pred CCcCccCCCEec-ceE--EEECcccccccCC--------EeCCCCCcCC
Confidence 345666666665 222 2223556666653 3556655543
No 164
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.95 E-value=71 Score=20.37 Aligned_cols=38 Identities=24% Similarity=0.522 Sum_probs=19.3
Q ss_pred CcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCccccccc
Q 029389 141 EDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 141 ~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
...|..|-+.+. +.. +..-+..||..| .+|-.|++.|.
T Consensus 15 ~~~C~~C~~~I~-~~~--v~a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 2cor_A 15 KYICQKCHAIID-EQP--LIFKNDPYHPDH--------FNCANCGKELT 52 (79)
T ss_dssp CCBCTTTCCBCC-SCC--CCCSSSCCCTTT--------SBCSSSCCBCC
T ss_pred CCCCccCCCEec-ceE--EEECcceeCCCC--------CEeCCCCCccC
Confidence 445666666665 222 122355566555 24555655543
No 165
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=22.55 E-value=79 Score=21.98 Aligned_cols=10 Identities=20% Similarity=0.301 Sum_probs=4.4
Q ss_pred cccccccccc
Q 029389 142 DVCPTCLEEY 151 (194)
Q Consensus 142 ~~C~ICle~~ 151 (194)
..|..|...+
T Consensus 30 F~C~~C~~~L 39 (131)
T 2xjy_A 30 LSCDLCGCRL 39 (131)
T ss_dssp CBCTTTCCBC
T ss_pred cccCcCCCcc
Confidence 3444444444
No 166
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=22.55 E-value=66 Score=20.88 Aligned_cols=48 Identities=17% Similarity=0.337 Sum_probs=29.2
Q ss_pred CCcccccccccccCCCCeEEe--cCCCeecHHHHHHHHH---------cCCCCCcccccc
Q 029389 140 DEDVCPTCLEEYTLENPKIVT--QCRHHYHLSCIYEWME---------RSPTCPVCSKVM 188 (194)
Q Consensus 140 ~~~~C~ICle~~~~~~~~~~l--~C~H~FH~~CI~~Wl~---------~~~tCPvCR~~v 188 (194)
+...| ||-.....+.-+.-- .|..=||..|+.---. .+..||.|+...
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 45567 888874322212222 5888999999853221 245799997643
No 167
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=21.76 E-value=25 Score=22.05 Aligned_cols=16 Identities=25% Similarity=0.611 Sum_probs=11.1
Q ss_pred cCCCCCcccccccCCC
Q 029389 177 RSPTCPVCSKVMVFDE 192 (194)
Q Consensus 177 ~~~tCPvCR~~v~~~~ 192 (194)
..+.||.|+..|.-.+
T Consensus 5 ~~k~CP~C~~~Iek~~ 20 (60)
T 1wd2_A 5 NTKECPKCHVTIEKDG 20 (60)
T ss_dssp CCCCCTTTCCCCSSCC
T ss_pred cceECcCCCCeeEeCC
Confidence 3467999988776543
No 168
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=21.42 E-value=39 Score=21.61 Aligned_cols=47 Identities=23% Similarity=0.545 Sum_probs=29.1
Q ss_pred CCCCcccccccccccCCCCeE-EecCCCeecHHHHHHHHH---cCCCCCcccc
Q 029389 138 PEDEDVCPTCLEEYTLENPKI-VTQCRHHYHLSCIYEWME---RSPTCPVCSK 186 (194)
Q Consensus 138 ~~~~~~C~ICle~~~~~~~~~-~l~C~H~FH~~CI~~Wl~---~~~tCPvCR~ 186 (194)
..+...| ||...+. +...+ --.|..=||..|+.--.. ..-.||.|+.
T Consensus 16 ~~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 16 FQGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 3455677 9987765 22222 235888999999864221 2346888864
No 169
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=21.03 E-value=34 Score=21.91 Aligned_cols=39 Identities=23% Similarity=0.473 Sum_probs=20.4
Q ss_pred CcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCccccccc
Q 029389 141 EDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMV 189 (194)
Q Consensus 141 ~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~ 189 (194)
...|..|-+.+..++. +..-+..||..|. .|-.|++.|.
T Consensus 7 ~~~C~~C~~~I~~~~~--~~a~~~~~H~~CF--------~C~~C~~~L~ 45 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEE--VQCDGRSFHRCCF--------LCMVCRKNLD 45 (81)
T ss_dssp -CBCSSSCCBCSSTTE--EEETTEEEESSSE--------ECSSSCCEEC
T ss_pred CCcCcCcCccccCcee--EEeCCcccccccC--------ccCCCCCCCC
Confidence 3467777776654332 2224566666552 2555655543
No 170
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.69 E-value=1e+02 Score=18.69 Aligned_cols=36 Identities=28% Similarity=0.594 Sum_probs=18.5
Q ss_pred cccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccccc
Q 029389 142 DVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVM 188 (194)
Q Consensus 142 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v 188 (194)
..|..|-+.+.. + .+..-+..||..|. +|-.|++.|
T Consensus 6 ~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L 41 (70)
T 2d8z_A 6 SGCVQCKKPITT-G--GVTYREQPWHKECF--------VCTACRKQL 41 (70)
T ss_dssp CBCSSSCCBCCS-S--EEESSSSEEETTTS--------BCSSSCCBC
T ss_pred CCCcccCCeecc-c--eEEECccccCCCCC--------ccCCCCCcC
Confidence 456666666642 1 12234566666552 355565554
No 171
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=20.50 E-value=7.3 Score=25.40 Aligned_cols=9 Identities=0% Similarity=-0.270 Sum_probs=4.1
Q ss_pred CCCcccccc
Q 029389 180 TCPVCSKVM 188 (194)
Q Consensus 180 tCPvCR~~v 188 (194)
.|+.|+...
T Consensus 28 iC~~cg~~Y 36 (68)
T 2jr6_A 28 WSRQAKLAY 36 (68)
T ss_dssp EETTTTEEE
T ss_pred EcCCCCcEe
Confidence 355554443
No 172
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=20.32 E-value=1.2e+02 Score=19.98 Aligned_cols=47 Identities=28% Similarity=0.446 Sum_probs=27.9
Q ss_pred CCcccccccccccCCCCeEEecCCCeecHHHHHHHHHcCCCCCcccccccC
Q 029389 140 DEDVCPTCLEEYTLENPKIVTQCRHHYHLSCIYEWMERSPTCPVCSKVMVF 190 (194)
Q Consensus 140 ~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCR~~v~~ 190 (194)
+-..|..|...+... . -...=+..|+..|..+ .-...|..|.+.|..
T Consensus 32 ~CF~C~~C~~~L~~~-~-~~~~~g~~yC~~cy~~--~~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 32 TCFRCAKCLHPLANE-T-FVAKDNKILCNKCTTR--EDSPKCKGCFKAIVA 78 (101)
T ss_dssp TTCCCSSSCCCTTSS-C-CEEETTEEECHHHHTT--CCCCBCSSSCCBCCS
T ss_pred cCCcccccCCCCCcC-e-eECcCCEEEChhHhhh--hcCCccccCCCcccc
Confidence 446777787776422 1 1223456677777432 234579999888764
Done!