BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029390
(194 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WAR|A Chain A, Recombinant Human Purple Acid Phosphatase Expressed In
Pichia Pastoris
Length = 310
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 16/112 (14%)
Query: 38 SLSFLVVGDWG---------RRGAYNQTKVAHQMGIVGEKLKIDFIISTGDNFYDDGLTG 88
+L F+ VGDWG R N ++A + I+G DFI+S GDNFY G+
Sbjct: 10 ALRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQILG----ADFILSLGDNFYFTGVQD 65
Query: 89 VDDAAFFESFVNIYTAPSLAK-QWYNVLGNHDYRGDVEAQLSPVLRDIDSRW 139
++D F E+F ++++ SL K WY + GNHD+ G+V AQ++ I RW
Sbjct: 66 INDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQIA--YSKISKRW 115
>pdb|2BQ8|X Chain X, Crystal Structure Of Human Purple Acid Phosphatase With An
Inhibitory Conformation Of The Repression Loop
Length = 304
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 16/112 (14%)
Query: 38 SLSFLVVGDWG---------RRGAYNQTKVAHQMGIVGEKLKIDFIISTGDNFYDDGLTG 88
+L F+ VGDWG R N ++A + I+G DFI+S GDNFY G+
Sbjct: 4 ALRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQILGA----DFILSLGDNFYFTGVQD 59
Query: 89 VDDAAFFESFVNIYTAPSLAK-QWYNVLGNHDYRGDVEAQLSPVLRDIDSRW 139
++D F E+F ++++ SL K WY + GNHD+ G+V AQ++ I RW
Sbjct: 60 INDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQIA--YSKISKRW 109
>pdb|1QHW|A Chain A, Purple Acid Phosphatase From Rat Bone
Length = 327
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 62/119 (52%), Gaps = 16/119 (13%)
Query: 31 HPAKPDGSLSFLVVGDWG---------RRGAYNQTKVAHQMGIVGEKLKIDFIISTGDNF 81
H P +L F+ VGDWG R N ++A + I+G DFI+S GDNF
Sbjct: 20 HCTAPASTLRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQIMGA----DFIMSLGDNF 75
Query: 82 YDDGLTGVDDAAFFESFVNIYTAPSLAK-QWYNVLGNHDYRGDVEAQLSPVLRDIDSRW 139
Y G+ +D F E+F ++++ +L WY + GNHD+ G+V AQ++ I RW
Sbjct: 76 YFTGVHDANDKRFQETFEDVFSDRALRNIPWYVLAGNHDHLGNVSAQIA--YSKISKRW 132
>pdb|1QFC|A Chain A, Structure Of Rat Purple Acid Phosphatase
Length = 306
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 16/115 (13%)
Query: 35 PDGSLSFLVVGDWG---------RRGAYNQTKVAHQMGIVGEKLKIDFIISTGDNFYDDG 85
P +L F+ VGDWG R N ++A + I+G DFI+S GDNFY G
Sbjct: 3 PASTLRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQIMGA----DFIMSLGDNFYFTG 58
Query: 86 LTGVDDAAFFESFVNIYTAPSLAK-QWYNVLGNHDYRGDVEAQLSPVLRDIDSRW 139
+ +D F E+F ++++ +L WY + GNHD+ G+V AQ++ I RW
Sbjct: 59 VHDANDKRFQETFEDVFSDRALRNIPWYVLAGNHDHLGNVSAQIA--YSKISKRW 111
>pdb|1UTE|A Chain A, Pig Purple Acid Phosphatase Complexed With Phosphate
Length = 313
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 58/113 (51%), Gaps = 12/113 (10%)
Query: 35 PDGSLSFLVVGDWGRRGAYN-------QTKVAHQMGIVGEKLKIDFIISTGDNFYDDGLT 87
P L F+ VGDWG G N + A + + L DFI+S GDNFY G+
Sbjct: 3 PTPILRFVAVGDWG--GVPNAPFHTAREMANAKAIATTVKTLGADFILSLGDNFYFTGVH 60
Query: 88 GVDDAAFFESFVNIYTAPSLAK-QWYNVLGNHDYRGDVEAQLSPVLRDIDSRW 139
D F E+F ++++ PSL W+ + GNHD+ G+V AQ++ I RW
Sbjct: 61 DAKDKRFQETFEDVFSDPSLRNVPWHVLAGNHDHLGNVSAQIA--YSKISKRW 111
>pdb|3TGH|A Chain A, Gap50 The Anchor In The Inner Membrane Complex Of
Plasmodium
Length = 342
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 8/94 (8%)
Query: 39 LSFLVVGDWGR--RGAYNQTKVAHQMGIVGEKLKIDFIISTGDNFYDDGLTGVDDAAFFE 96
L F +GDWG+ +G K Q I E+ + FI+S G NF D G+ G++D A+
Sbjct: 4 LRFASLGDWGKDTKGQILNAKYFKQF-IKNER--VTFIVSPGSNFID-GVKGLNDPAWKN 59
Query: 97 SFVNIYTAPS--LAKQWYNVLGNHDYRGDVEAQL 128
+ ++Y+ + ++ VLG D+ G+ AQL
Sbjct: 60 LYEDVYSEEKGDMYMPFFTVLGTRDWTGNYNAQL 93
>pdb|2WUY|A Chain A, The Crystal Structure Of Wild-Type Baculovirus Polyhedra
Length = 245
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 64 IVGEKLKIDFIISTGDNFYDDGLTGVDDAAFFESFVNIYTAPSLAKQWYNVLGNHDYRGD 123
+VG K K +F T F +D V+D + F+ + P+ + Y L H R D
Sbjct: 86 VVGWKGK-EFYRETWTRFMEDSFPIVNDQEVMDVFLVVNMRPTRPNRCYKFLAQHALRCD 144
Query: 124 VEAQLSPVLRDIDSRWL 140
+ V+R ++ W+
Sbjct: 145 PDYVPHDVIRIVEPSWV 161
>pdb|2WUX|A Chain A, The Crystal Structure Of Recombinant Baculovirus Polyhedra
Length = 245
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 64 IVGEKLKIDFIISTGDNFYDDGLTGVDDAAFFESFVNIYTAPSLAKQWYNVLGNHDYRGD 123
+VG K K +F T F +D V+D + F+ + P+ + Y L H R D
Sbjct: 86 VVGWKGK-EFYRETWTRFMEDSFPIVNDQEVMDVFLVVNMRPTRPNRCYKFLAQHALRCD 144
Query: 124 VEAQLSPVLRDIDSRWL 140
+ V+R ++ W+
Sbjct: 145 PDYVPHDVIRIVEPSWV 161
>pdb|3JW6|A Chain A, Crystal Structure Of Acmnpv Baculovirus Polyhedra
Length = 245
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 64 IVGEKLKIDFIISTGDNFYDDGLTGVDDAAFFESFVNIYTAPSLAKQWYNVLGNHDYRGD 123
+VG K K +F T F +D V+D + F+ + P+ + Y L H R D
Sbjct: 86 VVGWKGK-EFYRETWTRFXEDSFPIVNDQEVXDVFLVVNXRPTRPNRCYKFLAQHALRCD 144
Query: 124 VEAQLSPVLRDIDSRWL 140
+ V+R ++ W+
Sbjct: 145 PDYVPHDVIRIVEPSWV 161
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
pdb|2ANL|B Chain B, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
Length = 327
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 116 GNHDYRGDVEAQLSPVLRDIDSRWLCLRSFIVNAEIAEFIFVDTTPFVNKYFT 168
N+ Y + E + P+L DID LC+ +I+ +I + F+ PF+ KYFT
Sbjct: 262 ANNTYTLEPEYYMEPLL-DIDDT-LCML-YILPVDIDKNTFILGDPFMRKYFT 311
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 117 NHDYRGDVEAQLSPVLRDIDSRWLCLRSFIVNAEIAEFIFVDTTPFVNKYFT 168
N+ Y + E + P L DID LC+ +I+ +I + F+ PF+ KYFT
Sbjct: 263 NNKYTLEPEFYMDP-LSDIDPA-LCML-YILPVDIDDNTFILGDPFMRKYFT 311
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,292,312
Number of Sequences: 62578
Number of extensions: 272889
Number of successful extensions: 453
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 434
Number of HSP's gapped (non-prelim): 11
length of query: 194
length of database: 14,973,337
effective HSP length: 94
effective length of query: 100
effective length of database: 9,091,005
effective search space: 909100500
effective search space used: 909100500
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)