BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029396
(194 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82352|RTNLE_ARATH Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1
SV=1
Length = 255
Score = 162 bits (409), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/161 (46%), Positives = 109/161 (67%)
Query: 33 FFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLRC 92
FE V YHL++ +CH IL L LFLWSN + + PQ PEI +PE+ F+ VA LR
Sbjct: 93 LFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRN 152
Query: 93 VFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEK 152
N A + + + D++KFL + LW+IS++G+WF+FLT++Y+ FV+ T+PMLYEK
Sbjct: 153 ELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEK 212
Query: 153 HEDLADTCAEKALVELKKQYAVLDQTVLQKLPISAVQRQHR 193
HED D AEKA+ EL+KQY V D+ VL K+PI++++ + +
Sbjct: 213 HEDKVDPLAEKAMKELQKQYVVFDEKVLSKIPIASLKAKAK 253
>sp|Q9SUR3|RTNLA_ARATH Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1
SV=1
Length = 275
Score = 158 bits (400), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 114/181 (62%), Gaps = 7/181 (3%)
Query: 14 GGTGKSQQAYWLVGQSYGFFFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQF 73
GG A W+V FE + YHL+T +CH +I+ L+ LFLWSN F + SPP+
Sbjct: 102 GGVLGGATAAWVV-------FELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKI 154
Query: 74 PEIKLPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFL 133
PE+ +PE+ +++A LR N +++ + D++KFL A LWV+SI+G F+FL
Sbjct: 155 PEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFL 214
Query: 134 TILYLVFVVSLTLPMLYEKHEDLADTCAEKALVELKKQYAVLDQTVLQKLPISAVQRQHR 193
T+ Y+ V+ T+P+ Y+K+ED D EKA++ELKKQYAVLD+ VL K+P+ ++ + +
Sbjct: 215 TLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVLSKIPLGPLKNKKK 274
Query: 194 S 194
Sbjct: 275 D 275
>sp|Q6DBN4|RTNLF_ARATH Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1
SV=1
Length = 253
Score = 155 bits (393), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 105/159 (66%)
Query: 33 FFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLRC 92
FE V YH ++ +CH +I L+ LFL SN AF + +PP+ PEI + E+ F+ + LR
Sbjct: 93 LFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRN 152
Query: 93 VFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEK 152
N A + + + D++KFL LW+IS++G+WF+FLT++Y+ FVV T+PMLYEK
Sbjct: 153 ELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEK 212
Query: 153 HEDLADTCAEKALVELKKQYAVLDQTVLQKLPISAVQRQ 191
HED D AEK L ELKK Y V D+ VL KLP+++++ +
Sbjct: 213 HEDKVDPVAEKTLKELKKHYMVFDEKVLSKLPVASLKAK 251
>sp|Q9SUT9|RTNLB_ARATH Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1
SV=1
Length = 271
Score = 150 bits (379), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 104/162 (64%)
Query: 33 FFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLRC 92
FE + YHL+T +CH +I+ L+ LFLWSN F SPP+ PE+ +PE+ +++A LR
Sbjct: 110 LFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRI 169
Query: 93 VFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEK 152
N +++ + DI+KFL+A LWV+SI+G + FLT+ Y+ V+ T+P+ Y+K
Sbjct: 170 EINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDK 229
Query: 153 HEDLADTCAEKALVELKKQYAVLDQTVLQKLPISAVQRQHRS 194
+ED D+ EKA+ ELKKQYAVLD V K+P ++ + +
Sbjct: 230 YEDKVDSYGEKAMAELKKQYAVLDAKVFSKIPRGPLKDKKKD 271
>sp|Q9FFS0|RTNLD_ARATH Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1
SV=1
Length = 257
Score = 144 bits (362), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 107/177 (60%), Gaps = 8/177 (4%)
Query: 14 GGTGKSQQAYWLVGQSYGFFFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQF 73
GG + A W++ FE YHL+ F+CH I L+ LFLWSN F S P
Sbjct: 81 GGVLGAVTASWVL-------FELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHI 133
Query: 74 PEIKLPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFL 133
PE+ +PED +++ LR N + +++ + D++KF+ LWV+SIIGS ++FL
Sbjct: 134 PEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFL 193
Query: 134 TILYLVFVVSLTLPMLYEKHEDLADTCAEKALVELKKQYAVLDQTVLQKLPISAVQR 190
T+ Y V+ T+P+LYEK+ED D EKA+ E+KKQYAVLD+ VL+K+ IS + R
Sbjct: 194 TLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLDEKVLRKV-ISKIPR 249
>sp|Q9SH59|RTNLC_ARATH Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1
SV=1
Length = 255
Score = 126 bits (316), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 94/151 (62%)
Query: 33 FFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLRC 92
FE + Y+L+T H IL L+ LFLWS+ + F SP PE+ +PED+ +++A LR
Sbjct: 89 LFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRI 148
Query: 93 VFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEK 152
N + +D+ + D++KFL LWV+S +GS +FLT++Y+ V+ T+P+LYEK
Sbjct: 149 EINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEK 208
Query: 153 HEDLADTCAEKALVELKKQYAVLDQTVLQKL 183
+ED D EKA+ E+KKQY D VL K+
Sbjct: 209 YEDKVDDFGEKAMREIKKQYVEFDVKVLSKV 239
>sp|Q9SS37|RTNLH_ARATH Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1
SV=1
Length = 247
Score = 110 bits (275), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 92/160 (57%)
Query: 34 FECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLRCV 93
FE + +H ++ +C++++L + F+WSN + F + S + P + LP+D F V + +
Sbjct: 87 FEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKE 146
Query: 94 FNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKH 153
N QD+ + ++++FL A + LWV +++GS +FLT+LY+ FV + T+P+LYE++
Sbjct: 147 VNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERY 206
Query: 154 EDLADTCAEKALVELKKQYAVLDQTVLQKLPISAVQRQHR 193
ED D + +++ Y LD L ++P + R
Sbjct: 207 EDEVDGFMDSMIMKFHSHYKKLDTGFLSRIPSGKFGLKKR 246
>sp|Q9M145|RTNLG_ARATH Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=3
SV=2
Length = 244
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 88/147 (59%), Gaps = 3/147 (2%)
Query: 38 GYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLRCVFNVA 97
G L+T +C IL L FLWSN + SP +I +PE ++ A + N A
Sbjct: 100 GRRLLTSLCRGSILFLLLSFLWSNA---LNKSPENMMDIYIPEKPLLQAASAMTFELNCA 156
Query: 98 SKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHEDLA 157
+ + E DI+ F+ A + LW++S+IG+WF FL++LY+ FV+ T+PMLYEK+ED
Sbjct: 157 FATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHTVPMLYEKYEDEI 216
Query: 158 DTCAEKALVELKKQYAVLDQTVLQKLP 184
D AEKA++E+KK Y V + L K+P
Sbjct: 217 DPIAEKAVIEMKKHYQVFEAKFLSKIP 243
>sp|Q9LJQ5|RTNLI_ARATH Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2
SV=1
Length = 225
Score = 107 bits (266), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 89/160 (55%)
Query: 32 FFFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLR 91
F E V Y+ +T ICH+ + ++ F+WS + F + P PE+ L E F ++A
Sbjct: 63 FLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFH 122
Query: 92 CVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYE 151
FN DV D F T+ L+++SIIG++F+F+ +L++ FV TLP++YE
Sbjct: 123 VRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYE 182
Query: 152 KHEDLADTCAEKALVELKKQYAVLDQTVLQKLPISAVQRQ 191
+ED DT A K + ++KK Y +D VL K+P V+ +
Sbjct: 183 MYEDDVDTAAGKLMRKMKKLYKKVDTNVLSKIPRGTVKNK 222
>sp|Q6NPD8|RTNLJ_ARATH Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2
SV=1
Length = 201
Score = 97.1 bits (240), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 91/164 (55%), Gaps = 3/164 (1%)
Query: 32 FFFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLR 91
F FE GY F+ ++ +L++ LFLW+ A + PQ P +++ E+ VA +R
Sbjct: 38 FLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIR 97
Query: 92 CVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYE 151
N + +++ + ++ ++VLW +S +G++ +FLTILYL V+SL +P LYE
Sbjct: 98 VWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYE 157
Query: 152 KHEDLADTCAEKALVELKKQYAVLDQTVLQKL---PISAVQRQH 192
+++DL D ++ QY +D+ +LQK+ P + +++
Sbjct: 158 RYQDLIDEKLSLTHRVIQTQYRKIDERLLQKIIAKPTNKIKKMQ 201
>sp|Q9LT71|RTNLK_ARATH Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2
SV=1
Length = 200
Score = 86.7 bits (213), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 75/127 (59%)
Query: 32 FFFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLR 91
F FE GY+L++F+ + ++L ++ FLW+ A + P P +++PE+ + A LR
Sbjct: 46 FLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVLNRPLPPVPNMEIPEEFANKAADDLR 105
Query: 92 CVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYE 151
N + D+T + + L +LVLW IS +G+ + LT++Y+ ++SL+ P++YE
Sbjct: 106 VWINYVLSIASDITIARNPIRLLQVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYE 165
Query: 152 KHEDLAD 158
K++D D
Sbjct: 166 KYQDHID 172
>sp|A2RVT6|RTNLN_ARATH Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2
SV=2
Length = 215
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 32 FFFECVGYHLVTFICHSIILTLSTLFLWSNLAA--FTDMSPPQFPEIKLPED----LFVR 85
F FE V Y +TF+C ++L + +WS + + PP ++++ E LF +
Sbjct: 55 FLFEVVEYPFITFLCQILLLFIFIFLIWSYIGSSQLIQSKPPSINDLRISESNWRFLFNK 114
Query: 86 VALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLT 145
+ ++ ++ D+++ D R A + LW++S++G++F LT+LY+VFV T
Sbjct: 115 INWFIIKLY--------DISSGKDFRLLFLAVVSLWILSVVGNYFSSLTLLYIVFVGLET 166
Query: 146 LPMLYEKHEDLADTCAEKALVELKKQYAVLDQTVLQKLPISAVQRQH 192
+PMLYE++E+ A K+ ++KK + V+ K+P + + +
Sbjct: 167 IPMLYEQYEEELTYAASKSGRDMKKLLNKFNSKVINKIPKAQAKTRR 213
>sp|Q8GYH6|RTNLP_ARATH Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2
SV=1
Length = 226
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 73/153 (47%)
Query: 32 FFFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLR 91
FE G ++ +++ + F+ + ++AF + PE+ L E++ A R
Sbjct: 65 LIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFR 124
Query: 92 CVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYE 151
N M DVT D R F + LW++S IGS+ T+LY+ ++S+T+P LY
Sbjct: 125 IKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYS 184
Query: 152 KHEDLADTCAEKALVELKKQYAVLDQTVLQKLP 184
K++ D C L Y ++D+ V+ +L
Sbjct: 185 KYQSKVDKCCGTIHRRLSHHYKIVDENVISRLS 217
>sp|O64837|RTNLM_ARATH Reticulon-like protein B13 OS=Arabidopsis thaliana GN=RTNLB13 PE=2
SV=1
Length = 206
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%)
Query: 25 LVGQSYGFFFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFV 84
LV S G+ +T + I +S +FLW +L P+ +++ E+ V
Sbjct: 33 LVSTSTWILLSFYGFTTITIVSWIGIAVVSMIFLWGSLLRLLSKVEPELSGLEVSEEFVV 92
Query: 85 RVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSL 144
R + + V E + F L W++S IG+ DF T L++ V+ L
Sbjct: 93 ETVRSCRMLMEEMVRWMFRVGAESEWFVFARTVLGFWILSRIGNLLDFHTCLFIGLVMGL 152
Query: 145 TLPMLYEKHED 155
T+P L+E++ D
Sbjct: 153 TVPKLWEEYGD 163
>sp|Q9M392|RTNLL_ARATH Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2
SV=1
Length = 203
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 22 AYWLVGQSYGFFFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPED 81
A W+V +++ Y + T I ++L LS LFLWS A+ + P PE ++ E
Sbjct: 45 ASWMVFEAF-------AYTIFTLISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEA 97
Query: 82 LFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFV 141
+ +++LR N ++ D+ D + + L+++S+IGS DF T+ + +
Sbjct: 98 MAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKVAVSLFLLSLIGSLMDFQTLCHTSVL 157
Query: 142 VSLTLPMLYEKHED 155
V +T+P YE++ED
Sbjct: 158 VVMTVPAFYERYED 171
>sp|Q9ZU43|RTNLO_ARATH Reticulon-like protein B15 OS=Arabidopsis thaliana GN=RTNLB15 PE=2
SV=2
Length = 191
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 12/130 (9%)
Query: 59 WSNLA-AFTDMSPPQFPEIKLPEDLFVRVALYLRCVFNVASK---MCQDVTTEPDIRKFL 114
W+ F PP E+ P+ L+ +F++ M ++ D + FL
Sbjct: 64 WAKFGEVFFTRRPPTPEELNQPDS-------PLKALFSMMEGHLLMLYEIAYGKDNKTFL 116
Query: 115 TATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHEDLADTCAEKALVELKKQYAV 174
L + +I IGS+ LTILY+ V S+T+P++Y + ++L D+ K E V
Sbjct: 117 KTILYVAIIYNIGSYISLLTILYICLVCSMTIPVVYMQFQELIDSFMGKVSEEKNNLLEV 176
Query: 175 LDQTVLQKLP 184
Q V+ K+P
Sbjct: 177 FKQ-VVSKIP 185
>sp|Q64548|RTN1_RAT Reticulon-1 OS=Rattus norvegicus GN=Rtn1 PE=2 SV=1
Length = 777
Score = 40.4 bits (93), Expect = 0.008, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 43/84 (51%)
Query: 75 EIKLPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLT 134
EI L ++ + L+ N K + + D+ L +++W+++ +G+ F+ LT
Sbjct: 665 EITLSQEQIQKYTDCLQLYVNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLT 724
Query: 135 ILYLVFVVSLTLPMLYEKHEDLAD 158
+L + V TLP++Y KH+ D
Sbjct: 725 LLLMAVVSMFTLPVVYVKHQAQVD 748
>sp|Q8K0T0|RTN1_MOUSE Reticulon-1 OS=Mus musculus GN=Rtn1 PE=1 SV=1
Length = 780
Score = 40.4 bits (93), Expect = 0.008, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 43/84 (51%)
Query: 75 EIKLPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLT 134
EI L ++ + L+ N K + + D+ L +++W+++ +G+ F+ LT
Sbjct: 668 EITLSQEQIQKYTDCLQLYVNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLT 727
Query: 135 ILYLVFVVSLTLPMLYEKHEDLAD 158
+L + V TLP++Y KH+ D
Sbjct: 728 LLLMAVVSMFTLPVVYVKHQAQVD 751
>sp|Q99P72|RTN4_MOUSE Reticulon-4 OS=Mus musculus GN=Rtn4 PE=1 SV=2
Length = 1162
Score = 39.7 bits (91), Expect = 0.012, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 31/50 (62%)
Query: 109 DIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHEDLAD 158
D+ L +++WV + +G+ F+ LT+L L + ++P++YE+H+ D
Sbjct: 1084 DLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLFSIPVIYERHQAQID 1133
>sp|Q9JK11|RTN4_RAT Reticulon-4 OS=Rattus norvegicus GN=Rtn4 PE=1 SV=1
Length = 1163
Score = 39.7 bits (91), Expect = 0.014, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 30/46 (65%)
Query: 109 DIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHE 154
D+ L +++WV + +G+ F+ LT+L L + ++P++YE+H+
Sbjct: 1085 DLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLFSIPVIYERHQ 1130
>sp|Q9NQC3|RTN4_HUMAN Reticulon-4 OS=Homo sapiens GN=RTN4 PE=1 SV=2
Length = 1192
Score = 39.3 bits (90), Expect = 0.015, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 31/50 (62%)
Query: 109 DIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHEDLAD 158
D+ L +++WV + +G+ F+ LT+L L + ++P++YE+H+ D
Sbjct: 1114 DLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQID 1163
>sp|Q5IS59|RTN1_PANTR Reticulon-1 OS=Pan troglodytes GN=RTN1 PE=2 SV=1
Length = 776
Score = 39.3 bits (90), Expect = 0.016, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 43/84 (51%)
Query: 75 EIKLPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLT 134
EI L ++ + L+ N K + + D+ L +++W+++ +G+ F+ LT
Sbjct: 664 EITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLT 723
Query: 135 ILYLVFVVSLTLPMLYEKHEDLAD 158
+L + V TLP++Y KH+ D
Sbjct: 724 LLLMAVVSMFTLPVVYVKHQAQID 747
>sp|Q16799|RTN1_HUMAN Reticulon-1 OS=Homo sapiens GN=RTN1 PE=1 SV=1
Length = 776
Score = 39.3 bits (90), Expect = 0.016, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 43/84 (51%)
Query: 75 EIKLPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLT 134
EI L ++ + L+ N K + + D+ L +++W+++ +G+ F+ LT
Sbjct: 664 EITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLT 723
Query: 135 ILYLVFVVSLTLPMLYEKHEDLAD 158
+L + V TLP++Y KH+ D
Sbjct: 724 LLLMAVVSMFTLPVVYVKHQAQID 747
>sp|A7MC64|RTN1_XENTR Reticulon-1 OS=Xenopus tropicalis GN=rtn1 PE=2 SV=2
Length = 764
Score = 37.4 bits (85), Expect = 0.060, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 44/84 (52%)
Query: 75 EIKLPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLT 134
EI L ++ + L+ N K + + D+ L +++W+++ +G+ F+ LT
Sbjct: 653 EISLSQEQIQKYTDCLQAYTNSIVKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLT 712
Query: 135 ILYLVFVVSLTLPMLYEKHEDLAD 158
+L + V +LP++Y+K++ D
Sbjct: 713 LLIMAVVSMFSLPVVYDKYQAQID 736
>sp|Q5MY90|RTN1B_XENLA Reticulon-1-B OS=Xenopus laevis GN=rtn1-b PE=2 SV=1
Length = 752
Score = 36.6 bits (83), Expect = 0.095, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 44/84 (52%)
Query: 75 EIKLPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLT 134
EI L ++ + + N +K + + D+ L +++W+++ +G+ F+ LT
Sbjct: 641 EISLSQEQIQKYTGCFQLYTNSIAKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLT 700
Query: 135 ILYLVFVVSLTLPMLYEKHEDLAD 158
+L + V +LP++Y+K++ D
Sbjct: 701 LLIMAVVSMFSLPVVYDKYQAQID 724
>sp|Q88AQ2|ALGB_PSESM Alginate biosynthesis transcriptional regulatory protein AlgB
OS=Pseudomonas syringae pv. tomato (strain DC3000)
GN=algB PE=3 SV=1
Length = 448
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 74/181 (40%), Gaps = 23/181 (12%)
Query: 7 NVQMFYFGGTGKSQQAYWLVGQSYGFFFECVGYHLVTFICHSIILTL--STLFLWSNLAA 64
N+ + GTGK + A + G S CV T C S+ L S LF S A
Sbjct: 170 NILILGESGTGKGELARAIHGWSKRAKKSCV-----TINCPSLTAELMESELFGHSR-GA 223
Query: 65 FTDMSPPQFPEIKLPED--LFVRV---------ALYLRCVFNVASKMCQD-VTTEPDIRK 112
FT S + + LF+ LR + + + D VT D+R
Sbjct: 224 FTGASESTLGRVNQADGGTLFLDEIGDFPLTLQPKLLRFIQDKEYERVGDPVTRRADVRI 283
Query: 113 FLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHEDLADTCAEKALVELKKQY 172
L L + G + + L LY + V++L LP L E+ ED+ T A++ L K+Y
Sbjct: 284 LAATNLNLEDMVRSGRFREDL--LYRLNVITLHLPALRERSEDIL-TLADRFLARFVKEY 340
Query: 173 A 173
A
Sbjct: 341 A 341
>sp|Q28D16|RTN3_XENTR Reticulon-3 OS=Xenopus tropicalis GN=rtn3 PE=2 SV=1
Length = 213
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 66 TDMSPPQFP----EIKLPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLW 121
TD P P +I L D F + N A K + D+ L L++W
Sbjct: 87 TDEGHPFKPLLEKDIALSSDAFQKALSTSLAHVNHALKYIVRLFLVEDLVDSLKLALLMW 146
Query: 122 VISIIGSWFDFLTILYLVFVVSLTLPMLYEKHE 154
+++ +G+ F+ +T+L L +++ T P++YEK++
Sbjct: 147 LMTYVGAVFNGITLLILGVLLAFTAPIVYEKYK 179
>sp|Q68EW1|RTN3B_XENLA Reticulon-3-B OS=Xenopus laevis GN=rtn3-b PE=2 SV=1
Length = 214
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 32/46 (69%)
Query: 109 DIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHE 154
D+ L L++W+++ IG+ F+ +T+L L +++ T P++YEK++
Sbjct: 135 DLVDSLKLALLMWLMTYIGAVFNGITLLILGVLLAFTTPLVYEKYK 180
>sp|Q5J6M8|RTN3A_XENLA Reticulon-3-A OS=Xenopus laevis GN=rtn3-a PE=2 SV=2
Length = 214
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 18/150 (12%)
Query: 23 YWLVGQSYGFFFECVGYHLVTFICHSIILTLSTLFLW------------SNLAAF--TDM 68
YW + G F L++ SII +S L L S L A TD
Sbjct: 31 YWRDVKQSGMVFGGTMVLLLSLAAFSIISVISYLVLSLLTVTISYRVYKSVLQAVQKTDE 90
Query: 69 SPPQFP----EIKLPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVIS 124
P P +I L D F + N A K + D+ L L++W+++
Sbjct: 91 GHPFKPLLEKDITLSSDSFQKALTASLAHVNHALKYIVRLFLVDDLVDSLKLALLMWLMT 150
Query: 125 IIGSWFDFLTILYLVFVVSLTLPMLYEKHE 154
+G+ F+ +T+L L +++ T P++YEK++
Sbjct: 151 YVGAVFNGITLLILGVLLTFTAPIVYEKYK 180
>sp|Q6RJR6|RTN3_RAT Reticulon-3 OS=Rattus norvegicus GN=Rtn3 PE=1 SV=1
Length = 940
Score = 35.0 bits (79), Expect = 0.32, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 8/57 (14%)
Query: 110 IRKFLTATLV--------LWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHEDLAD 158
IR FL LV +W+++ +G+ F+ +T+L L ++ ++P++YEK++ D
Sbjct: 854 IRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLVFSVPIVYEKYKTQID 910
>sp|Q9ES97|RTN3_MOUSE Reticulon-3 OS=Mus musculus GN=Rtn3 PE=1 SV=2
Length = 964
Score = 35.0 bits (79), Expect = 0.32, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 8/57 (14%)
Query: 110 IRKFLTATLV--------LWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHEDLAD 158
IR FL LV +W+++ +G+ F+ +T+L L ++ ++P++YEK++ D
Sbjct: 878 IRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLVFSVPIVYEKYKTQID 934
>sp|Q6IFY7|RTN1A_XENLA Reticulon-1-A OS=Xenopus laevis GN=rtn1-a PE=2 SV=1
Length = 207
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 45/84 (53%)
Query: 75 EIKLPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLT 134
EI L ++ + L+ N +K + + D+ L +++W+++ +G+ F+ LT
Sbjct: 96 EISLSQEQIQKYTDCLQVYTNSIAKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLT 155
Query: 135 ILYLVFVVSLTLPMLYEKHEDLAD 158
+L + V +LP++Y+K++ D
Sbjct: 156 LLIMAVVSMFSLPVVYDKYQAQID 179
>sp|O95197|RTN3_HUMAN Reticulon-3 OS=Homo sapiens GN=RTN3 PE=1 SV=2
Length = 1032
Score = 34.7 bits (78), Expect = 0.39, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 8/57 (14%)
Query: 110 IRKFLTATLV--------LWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHEDLAD 158
IR FL LV +W+++ +G+ F+ +T+L L ++ ++P++YEK++ D
Sbjct: 946 IRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQID 1002
>sp|Q4FZ58|RTN2_XENTR Reticulon-2 OS=Xenopus tropicalis GN=rtn2 PE=2 SV=2
Length = 321
Score = 34.3 bits (77), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Query: 109 DIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHEDLAD 158
D KFL +++++++ +G+ F+ +T+L L + + T P+LY++H+ D
Sbjct: 246 DSLKFL---VIIYLLTYVGAVFNGITVLLLCVIGAFTFPILYKQHQTQVD 292
>sp|Q4FZ76|RTN2_XENLA Reticulon-2 OS=Xenopus laevis GN=rtn2 PE=2 SV=1
Length = 321
Score = 33.9 bits (76), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Query: 109 DIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHEDLAD 158
D KFL +++++++ +G+ F+ +T+L L + + T P+LY++H+ D
Sbjct: 246 DSLKFL---VIVYLLTYVGAVFNGITVLLLCVIGAFTFPILYKQHQTQVD 292
>sp|O70622|RTN2_MOUSE Reticulon-2 OS=Mus musculus GN=Rtn2 PE=1 SV=1
Length = 471
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 29/46 (63%)
Query: 109 DIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHE 154
D+ L L+ ++++ +G+ F+ LT++ L V T+P+LY +H+
Sbjct: 381 DLVDSLKLALLFYILTFVGAIFNGLTLVILGVVALFTVPLLYRQHQ 426
>sp|Q8K400|STXB5_MOUSE Syntaxin-binding protein 5 OS=Mus musculus GN=Stxbp5 PE=1 SV=3
Length = 1152
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 8 VQMFYFGGTGKSQQAYWLVGQSYGF--FFECVGYHLVTFICHSIILTLSTLFLWSN 61
+Q+ + GG Q + SYG F C G +V ++ +++L LST+ L+ +
Sbjct: 620 IQLVWVGGEPPQQITSLALNSSYGLVVFGNCNGIAMVDYLQKAVLLNLSTIELYGS 675
>sp|O75298|RTN2_HUMAN Reticulon-2 OS=Homo sapiens GN=RTN2 PE=1 SV=1
Length = 545
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 29/46 (63%)
Query: 109 DIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHE 154
D+ L L+ ++++ +G+ F+ LT+L L + T+P+LY +H+
Sbjct: 454 DLVDSLKLALLFYILTFVGAIFNGLTLLILGVIGLFTIPLLYRQHQ 499
>sp|Q08D83|RTN3_BOVIN Reticulon-3 OS=Bos taurus GN=RTN3 PE=2 SV=1
Length = 256
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 8/57 (14%)
Query: 110 IRKFLTATLV--------LWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHEDLAD 158
IR FL LV +W+++ +G+ F+ +T+L L ++ ++P++YEK++ D
Sbjct: 170 IRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLVFSIPIVYEKYKTQID 226
>sp|Q5RBL9|RTN3_PONAB Reticulon-3 OS=Pongo abelii GN=RTN3 PE=2 SV=1
Length = 236
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 8/57 (14%)
Query: 110 IRKFLTATLV--------LWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHEDLAD 158
IR FL LV +W+++ +G+ F+ +T+L L ++ ++P++YEK++ D
Sbjct: 150 IRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQID 206
>sp|O60412|OR7C2_HUMAN Olfactory receptor 7C2 OS=Homo sapiens GN=OR7C2 PE=2 SV=4
Length = 319
Score = 30.0 bits (66), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 121 WVISIIGSWFDFLTILYLVFVVSLTLPMLY-EKHEDLADTCAE 162
W IS++GS + LTIL L F ++ +P + + E L C++
Sbjct: 149 WCISVMGSLLETLTILRLSFCTNMEIPHFFCDPSEVLKLACSD 191
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.141 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,526,529
Number of Sequences: 539616
Number of extensions: 2482155
Number of successful extensions: 7258
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 7215
Number of HSP's gapped (non-prelim): 48
length of query: 194
length of database: 191,569,459
effective HSP length: 111
effective length of query: 83
effective length of database: 131,672,083
effective search space: 10928782889
effective search space used: 10928782889
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.9 bits)