Query 029396
Match_columns 194
No_of_seqs 108 out of 392
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 12:15:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029396.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029396hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1792 Reticulon [Intracellul 100.0 4.6E-44 1E-48 300.6 18.6 182 9-190 34-229 (230)
2 PF02453 Reticulon: Reticulon; 100.0 2.8E-32 6E-37 216.9 -7.8 158 12-170 6-169 (169)
3 KOG1792 Reticulon [Intracellul 93.8 0.26 5.7E-06 41.9 7.1 78 100-177 42-142 (230)
4 PF08372 PRT_C: Plant phosphor 91.8 1.1 2.4E-05 36.0 7.7 63 89-151 73-135 (156)
5 PF04842 DUF639: Plant protein 88.4 8.6 0.00019 37.6 11.9 99 78-190 580-678 (683)
6 PF10112 Halogen_Hydrol: 5-bro 76.2 39 0.00085 27.4 9.9 73 114-187 15-98 (199)
7 KOG1726 HVA22/DP1 gene product 74.6 42 0.00092 28.5 9.8 58 123-180 52-123 (225)
8 PF10256 Erf4: Golgin subfamil 72.1 32 0.00069 25.5 7.8 66 78-166 30-95 (118)
9 PF01594 UPF0118: Domain of un 69.4 72 0.0016 27.3 11.2 43 119-161 130-172 (327)
10 PF01484 Col_cuticle_N: Nemato 68.1 25 0.00054 22.1 5.6 30 140-169 15-47 (53)
11 COG0053 MMT1 Predicted Co/Zn/C 61.4 1.1E+02 0.0025 26.7 10.2 120 40-160 82-211 (304)
12 KOG3488 Dolichol phosphate-man 55.8 22 0.00047 25.0 3.8 35 100-134 38-72 (81)
13 PF00873 ACR_tran: AcrB/AcrD/A 49.7 3E+02 0.0065 28.1 14.8 153 12-181 351-525 (1021)
14 PF04842 DUF639: Plant protein 49.6 1.7E+02 0.0037 28.9 10.0 55 96-154 501-555 (683)
15 PHA03049 IMV membrane protein; 41.9 56 0.0012 22.6 4.0 28 81-108 40-68 (68)
16 TIGR02872 spore_ytvI sporulati 39.2 2.5E+02 0.0053 24.0 13.0 12 44-55 56-67 (341)
17 COG4536 CorB Putative Mg2+ and 38.5 2E+02 0.0044 26.6 8.1 86 9-95 81-182 (423)
18 COG1458 Predicted DNA-binding 37.4 48 0.001 27.8 3.7 45 60-104 74-118 (221)
19 PF10332 DUF2418: Protein of u 34.2 1.9E+02 0.0041 21.3 6.6 46 131-180 39-84 (99)
20 PF06881 Elongin_A: RNA polyme 34.1 69 0.0015 23.6 3.9 33 145-177 64-96 (109)
21 COG3404 Methenyl tetrahydrofol 33.8 2.8E+02 0.006 23.3 7.6 30 135-164 36-66 (208)
22 COG3887 Predicted signaling pr 33.2 4.8E+02 0.01 25.7 10.3 59 125-187 30-88 (655)
23 PF02453 Reticulon: Reticulon; 29.7 12 0.00025 29.1 -1.0 50 102-151 2-53 (169)
24 PF01452 Rota_NSP4: Rotavirus 29.3 79 0.0017 25.5 3.6 28 150-177 88-115 (173)
25 PRK10945 gene expression modul 27.1 54 0.0012 23.0 2.1 16 144-159 22-37 (72)
26 PF10444 Nbl1_Borealin_N: Nbl1 27.0 1.9E+02 0.0041 18.9 4.7 36 151-186 8-46 (59)
27 PF07234 DUF1426: Protein of u 26.2 1.1E+02 0.0023 22.9 3.6 47 106-162 4-50 (117)
28 PF14940 TMEM219: Transmembran 26.2 88 0.0019 26.6 3.6 46 45-106 13-58 (223)
29 PF13677 MotB_plug: Membrane M 23.8 2.2E+02 0.0048 18.6 4.5 25 128-152 20-44 (58)
30 TIGR03875 RNA_lig_partner RNA 23.7 73 0.0016 26.8 2.6 35 68-102 78-112 (206)
31 COG1377 FlhB Flagellar biosynt 22.6 6E+02 0.013 23.2 13.4 16 172-187 249-264 (363)
32 PF14800 DUF4481: Domain of un 22.4 2.7E+02 0.0059 24.8 6.0 82 22-114 69-153 (308)
33 PF05062 RICH: RICH domain; I 22.4 1.7E+02 0.0037 21.0 4.0 25 150-174 4-28 (82)
34 KOG1889 Putative phosphoinosit 21.9 2.4E+02 0.0051 27.3 5.8 54 23-76 524-577 (579)
35 PHA02677 hypothetical protein; 21.8 1.8E+02 0.004 21.8 4.1 33 132-164 5-37 (108)
36 COG5038 Ca2+-dependent lipid-b 21.8 4.6E+02 0.0099 27.8 8.2 54 109-164 157-210 (1227)
37 PRK04358 hypothetical protein; 21.8 85 0.0018 26.6 2.6 36 68-103 82-117 (217)
38 COG1405 SUA7 Transcription ini 20.8 5.1E+02 0.011 22.7 7.4 75 75-178 204-278 (285)
39 TIGR02831 spo_II_M stage II sp 20.4 4.8E+02 0.01 21.3 9.4 44 111-154 71-116 (200)
40 COG1682 TagG ABC-type polysacc 20.4 5.5E+02 0.012 22.0 8.5 47 96-158 214-260 (263)
No 1
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-44 Score=300.60 Aligned_cols=182 Identities=37% Similarity=0.678 Sum_probs=174.7
Q ss_pred eehhccCchhHHHHHH----------HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhhhCC-CCC--CCC-
Q 029396 9 QMFYFGGTGKSQQAYW----------LVGQSYGFFFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDM-SPP--QFP- 74 (194)
Q Consensus 9 ~~~~~~~~~~~~~~~~----------~~~~l~~~Lf~~~~ysliS~~s~ill~~l~~~fl~~~~~~~~~~-~~p--~~p- 74 (194)
-..++|+|++||..+| ..++++|++|+.++|+.+|++|+++++.+.+.|.|++...+++| ++| ..|
T Consensus 34 v~~~lg~~~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~ 113 (230)
T KOG1792|consen 34 VHKVLGGGKVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLNKKSEPGAYLPV 113 (230)
T ss_pred ccccCCCCchhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCc
Confidence 3567899999999999 78899999999999999999999999999999999999888888 666 688
Q ss_pred CcccCHHHHHHHHHHHHHHHHHHHHhcchhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhch
Q 029396 75 EIKLPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHE 154 (194)
Q Consensus 75 ~~~isee~~~~~a~~v~~~in~~l~~lr~l~~g~d~~~~lKv~~~L~vls~vGs~~s~~TLl~i~~v~~FTlP~lYe~yq 154 (194)
|+++|||.+++.+++++.++|+.++.+|++++|+|+++|+|++++||++|++|+|||++|++|+|++++||+|++||+||
T Consensus 114 ~i~ipee~~~~~a~~~~~~in~~l~~l~~ia~~~d~~~~lk~~v~lw~lS~vGs~fn~lTll~ig~v~~~TvP~~YEky~ 193 (230)
T KOG1792|consen 114 EITIPEEFVLALASSLRVEINQALSELRDIALGRDLKDFLKVAVGLWILSYVGSLFNFLTLLYIGLVLLFTVPVLYEKYE 193 (230)
T ss_pred eeecCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchhHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchh
Q 029396 155 DLADTCAEKALVELKKQYAVLDQTVLQKLPISAVQR 190 (194)
Q Consensus 155 ~~ID~~~~~~~~~~~~~y~~~~~kv~~kiP~~~~k~ 190 (194)
|+||++++++.++.+++|+++|+|+++|||+++.++
T Consensus 194 d~ID~~~~~~~~~~k~~~~~~~~k~l~kip~~~~~~ 229 (230)
T KOG1792|consen 194 DQIDPYLGKVMEELKKHYRKFDEKVLSKIPAGPRKK 229 (230)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCccccC
Confidence 999999999999999999999999999999988654
No 2
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=99.96 E-value=2.8e-32 Score=216.89 Aligned_cols=158 Identities=27% Similarity=0.415 Sum_probs=49.2
Q ss_pred hccCchhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhhhCCCC------CCCCCcccCHHHHHH
Q 029396 12 YFGGTGKSQQAYWLVGQSYGFFFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSP------PQFPEIKLPEDLFVR 85 (194)
Q Consensus 12 ~~~~~~~~~~~~~~~~~l~~~Lf~~~~ysliS~~s~ill~~l~~~fl~~~~~~~~~~~~------p~~p~~~isee~~~~ 85 (194)
+|.+++.+- ....++.++|+++.++++|++|++|+++++.+++.+++......+++.+ |+.++.++|||.+++
T Consensus 6 ~W~~~~~S~-~v~~~~~~~~~l~~~~~~s~is~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (169)
T PF02453_consen 6 LWRDPKKSG-IVFGAILLFWLLFWLFNYSLISLVSYILLLLLAISFLYRLLSKVLSRSPKGPFKEPLDYDLEISEERVER 84 (169)
T ss_dssp ------------------------------------------------THCCCTCCHHHHCTTHHHHCHHHHHCCHHHHH
T ss_pred EecCCCchH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccCCccccccccHHHHHH
Confidence 344444442 2336677778999999999999999999999999999988888888765 445588999999999
Q ss_pred HHHHHHHHHHHHHHhcchhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhchhHHHHHHHHHH
Q 029396 86 VALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHEDLADTCAEKAL 165 (194)
Q Consensus 86 ~a~~v~~~in~~l~~lr~l~~g~d~~~~lKv~~~L~vls~vGs~~s~~TLl~i~~v~~FTlP~lYe~yq~~ID~~~~~~~ 165 (194)
.++.+++.+|..++.+|+++.++|+..|+|+++++|+++.+|+++|++|++|++++++||+|.+||+||++||+++++++
T Consensus 85 ~~~~~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~~~~~Id~~~~~~~ 164 (169)
T PF02453_consen 85 LADSVAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEKYQEEIDQYVAKVK 164 (169)
T ss_dssp HHHHCCCCCCHHHHHHHCCCHCT-TTGGG---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHH
Q 029396 166 VELKK 170 (194)
Q Consensus 166 ~~~~~ 170 (194)
+++||
T Consensus 165 ~~~~k 169 (169)
T PF02453_consen 165 EKVKK 169 (169)
T ss_dssp -----
T ss_pred HHhcC
Confidence 88763
No 3
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.75 E-value=0.26 Score=41.89 Aligned_cols=78 Identities=19% Similarity=0.215 Sum_probs=64.7
Q ss_pred hcchhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhc-----------------------hhH
Q 029396 100 MCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKH-----------------------EDL 156 (194)
Q Consensus 100 ~lr~l~~g~d~~~~lKv~~~L~vls~vGs~~s~~TLl~i~~v~~FTlP~lYe~y-----------------------q~~ 156 (194)
...+++.|||.+.++.+.++..++-.+-.+++..++...+.+..+++++.|-++ |+.
T Consensus 42 ~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ipee~ 121 (230)
T KOG1792|consen 42 KVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLNKKSEPGAYLPVEITIPEEF 121 (230)
T ss_pred chhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCceeecCHHH
Confidence 578999999999999999999999999888888888888888888777777665 567
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029396 157 ADTCAEKALVELKKQYAVLDQ 177 (194)
Q Consensus 157 ID~~~~~~~~~~~~~y~~~~~ 177 (194)
+++++..++.+++...+++.+
T Consensus 122 ~~~~a~~~~~~in~~l~~l~~ 142 (230)
T KOG1792|consen 122 VLALASSLRVEINQALSELRD 142 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888776666655
No 4
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=91.79 E-value=1.1 Score=35.97 Aligned_cols=63 Identities=11% Similarity=0.057 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhcchhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Q 029396 89 YLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYE 151 (194)
Q Consensus 89 ~v~~~in~~l~~lr~l~~g~d~~~~lKv~~~L~vls~vGs~~s~~TLl~i~~v~~FTlP~lYe 151 (194)
.+...+....+.++.++.|+|+..|..+++++++.+.+--+..+..++.+..+-.++=|++=.
T Consensus 73 ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~ 135 (156)
T PF08372_consen 73 NVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRN 135 (156)
T ss_pred HHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccC
Confidence 334445567889999999999999999999998888887777777777777677777766644
No 5
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=88.36 E-value=8.6 Score=37.58 Aligned_cols=99 Identities=15% Similarity=0.117 Sum_probs=74.8
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHhcchhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhchhHH
Q 029396 78 LPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHEDLA 157 (194)
Q Consensus 78 isee~~~~~a~~v~~~in~~l~~lr~l~~g~d~~~~lKv~~~L~vls~vGs~~s~~TLl~i~~v~~FTlP~lYe~yq~~I 157 (194)
+.=..+...++......|-++-++|.|.+...+..+-+|++.|..++.+--.+.+--++...++-.||-..=+.+
T Consensus 580 lalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll~~A~~LavvP~kyil~~v~l~~FTre~~~Rr----- 654 (683)
T PF04842_consen 580 LALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALLGLAAVLAVVPFKYILLFVFLEVFTRESPFRR----- 654 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCch-----
Confidence 455556666788888899999999999999999999999999999999999999999999999888885432211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchh
Q 029396 158 DTCAEKALVELKKQYAVLDQTVLQKLPISAVQR 190 (194)
Q Consensus 158 D~~~~~~~~~~~~~y~~~~~kv~~kiP~~~~k~ 190 (194)
...++..+++++.+ ..||-+|..-
T Consensus 655 -~s~er~~RRlrEWW--------~sIPAaPV~v 678 (683)
T PF04842_consen 655 -ESSERFNRRLREWW--------DSIPAAPVQV 678 (683)
T ss_pred -hhHHHHHHHHHHHH--------hhCCccceEe
Confidence 12233444444333 4678877654
No 6
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=76.21 E-value=39 Score=27.44 Aligned_cols=73 Identities=12% Similarity=0.175 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhchhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 029396 114 LTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHEDLA-----------DTCAEKALVELKKQYAVLDQTVLQK 182 (194)
Q Consensus 114 lKv~~~L~vls~vGs~~s~~TLl~i~~v~~FTlP~lYe~yq~~I-----------D~~~~~~~~~~~~~y~~~~~kv~~k 182 (194)
.-+++..|++++.|.-.+++--+.+|.++.+.......+.+..- .+++.....+.+++.+++.+ ...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~k~~~~~gls~~e~~~~~~~l~ea~~~i~~i~~-~~~~ 93 (199)
T PF10112_consen 15 VLIAAITFLVSFFGFDHSFLLSLLIGAVAFAVVYLFGKRRQRRKFLKEAGLSDREYEYIREILEEAKEKIRRIEK-AIKR 93 (199)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccccchhHhhhcCCChhHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 34555666777776555666655566666666555555443222 22445555555666666644 4566
Q ss_pred CCCCc
Q 029396 183 LPISA 187 (194)
Q Consensus 183 iP~~~ 187 (194)
++...
T Consensus 94 i~~~~ 98 (199)
T PF10112_consen 94 IRDLE 98 (199)
T ss_pred cCCHH
Confidence 66543
No 7
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms]
Probab=74.57 E-value=42 Score=28.52 Aligned_cols=58 Identities=28% Similarity=0.423 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh------HHHh--------hchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029396 123 ISIIGSWFDFLTILYLVFVVSLTLP------MLYE--------KHEDLADTCAEKALVELKKQYAVLDQTVL 180 (194)
Q Consensus 123 ls~vGs~~s~~TLl~i~~v~~FTlP------~lYe--------~yq~~ID~~~~~~~~~~~~~y~~~~~kv~ 180 (194)
...+-+|+-+....-+.++.-.-.| .+|+ +||++||+++.+++++.-++...+-.|.+
T Consensus 52 ~d~~lsw~P~Y~e~Kl~fv~wL~~p~t~G~~~vY~~f~~p~ls~~E~eid~~l~~~k~~~~~~a~~~~~r~l 123 (225)
T KOG1726|consen 52 TDFLLSWFPFYSEFKLAFVIWLLSPATKGASYVYRKFLRPFLSKHEEEIDRMLVEAKERVYDAAVSILKRAL 123 (225)
T ss_pred HHHHHHHhhhHHHHHHHHHhhccccccCccHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555556655555433 4554 57999999999998887665555555444
No 8
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=72.11 E-value=32 Score=25.54 Aligned_cols=66 Identities=18% Similarity=0.135 Sum_probs=33.7
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHhcchhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhchhHH
Q 029396 78 LPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHEDLA 157 (194)
Q Consensus 78 isee~~~~~a~~v~~~in~~l~~lr~l~~g~d~~~~lKv~~~L~vls~vGs~~s~~TLl~i~~v~~FTlP~lYe~yq~~I 157 (194)
||+++.+ .+...+|..+.....-..+. ++++..+..+|+ ++. ..-.-..|++...++
T Consensus 30 is~~ef~----~iI~~IN~~l~~a~~~~~~~---------------~~~~~~l~~lt~-~l~---~~~~~~~~~~~~~~l 86 (118)
T PF10256_consen 30 ISPEEFE----EIINTINQILKEAFEPISWR---------------NIIENILGCLTL-GLS---SLCFKTHYKRKLREL 86 (118)
T ss_pred CCHHHHH----HHHHHHHHHHHHHhcchhHH---------------HHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHH
Confidence 7888877 55667777766553332222 222222233331 111 111145677777777
Q ss_pred HHHHHHHHH
Q 029396 158 DTCAEKALV 166 (194)
Q Consensus 158 D~~~~~~~~ 166 (194)
|++++....
T Consensus 87 e~~l~~~N~ 95 (118)
T PF10256_consen 87 EKYLEQLNE 95 (118)
T ss_pred HHHHHHHHH
Confidence 777766643
No 9
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=69.41 E-value=72 Score=27.30 Aligned_cols=43 Identities=19% Similarity=0.191 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhchhHHHHHH
Q 029396 119 VLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHEDLADTCA 161 (194)
Q Consensus 119 ~L~vls~vGs~~s~~TLl~i~~v~~FTlP~lYe~yq~~ID~~~ 161 (194)
.-++.+..++..+...=+.+..+..|-.=.=.++.++.+.+..
T Consensus 130 ~~~~~~~~~~~~~~l~~~~i~l~~~~~~l~~~~~~~~~~~~~~ 172 (327)
T PF01594_consen 130 LSSLSSFISSIFSFLFNFFIFLIFLFFFLLDGEKLRRFLIRLL 172 (327)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 3444555555544444444443333333333344444444433
No 10
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=68.11 E-value=25 Score=22.06 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=16.5
Q ss_pred HHHHHhhhHHHhh---chhHHHHHHHHHHHHHH
Q 029396 140 FVVSLTLPMLYEK---HEDLADTCAEKALVELK 169 (194)
Q Consensus 140 ~v~~FTlP~lYe~---yq~~ID~~~~~~~~~~~ 169 (194)
+.+.+++|.+|.. -|++++.-++..+...+
T Consensus 15 ~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~ 47 (53)
T PF01484_consen 15 LSCLITVPSIYNDIQNFQSELDDEMEEFKEISD 47 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999964 23334444444443333
No 11
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=61.36 E-value=1.1e+02 Score=26.73 Aligned_cols=120 Identities=18% Similarity=0.250 Sum_probs=71.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCc--------ccCHHHHHHHHHHHHHHHHHHHHhcchhccccCHH
Q 029396 40 HLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEI--------KLPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIR 111 (194)
Q Consensus 40 sliS~~s~ill~~l~~~fl~~~~~~~~~~~~p~~p~~--------~isee~~~~~a~~v~~~in~~l~~lr~l~~g~d~~ 111 (194)
++.+++.-+.++...+..+|....++++..+++.|.. .+..+...+....+..+.|.-.-..-..=.--|..
T Consensus 82 ~l~sl~~~~~i~~~g~~i~~~a~~~~~~~~~~~~~~~~~~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ 161 (304)
T COG0053 82 TLASLIVSILIFAAGFEILLEAIKRLISPQPVEPPLLALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVL 161 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHH
Confidence 4556666666666666678888888887555554421 13355555666666666664333222222223888
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhh-hHHHhhchhHHHHH
Q 029396 112 KFLTATLVLWVISIIG-SWFDFLTILYLVFVVSLTL-PMLYEKHEDLADTC 160 (194)
Q Consensus 112 ~~lKv~~~L~vls~vG-s~~s~~TLl~i~~v~~FTl-P~lYe~yq~~ID~~ 160 (194)
.++-+.+++- ....| -|.+...-+.+++....+. =.++|.-.+.+|+.
T Consensus 162 ts~~~lvgl~-~~~~g~~~lD~i~a~~I~~~Il~~~~~~~~~s~~~L~d~~ 211 (304)
T COG0053 162 TSLAVLVGLL-GSLLGWPWLDPLAALLISLYILKTGFRLFKESVNELMDAA 211 (304)
T ss_pred HHHHHHHHHH-HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 8888888887 77778 6666666665555544443 34455555555533
No 12
>KOG3488 consensus Dolichol phosphate-mannose regulatory protein (DPM2) [Posttranslational modification, protein turnover, chaperones]
Probab=55.81 E-value=22 Score=24.96 Aligned_cols=35 Identities=9% Similarity=0.276 Sum_probs=29.5
Q ss_pred hcchhccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029396 100 MCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLT 134 (194)
Q Consensus 100 ~lr~l~~g~d~~~~lKv~~~L~vls~vGs~~s~~T 134 (194)
..+..++-+|+....-++++++.+..+|-+.|...
T Consensus 38 iihKyFLpr~yAi~iPvaagl~ll~lig~Fis~vM 72 (81)
T KOG3488|consen 38 IIHKYFLPREYAITIPVAAGLFLLCLIGTFISLVM 72 (81)
T ss_pred HHHHHhcChhHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 34567888999999999999999999999877654
No 13
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=49.72 E-value=3e+02 Score=28.06 Aligned_cols=153 Identities=9% Similarity=0.054 Sum_probs=79.0
Q ss_pred hccCchhHHHHHH---HHHHHHHHHHHhhcc--chhHHHHHHHHHHHHHH---HHHHHHHhhhCC-CCCCCCCcccCHHH
Q 029396 12 YFGGTGKSQQAYW---LVGQSYGFFFECVGY--HLVTFICHSIILTLSTL---FLWSNLAAFTDM-SPPQFPEIKLPEDL 82 (194)
Q Consensus 12 ~~~~~~~~~~~~~---~~~~l~~~Lf~~~~y--sliS~~s~ill~~l~~~---fl~~~~~~~~~~-~~p~~p~~~isee~ 82 (194)
++|+-|.+-+... +.....+.++.+.|+ +.+|+.+-++.+.+++= -+-=|..+..++ ..++ .+.
T Consensus 351 fl~~~r~~liv~~~IPisi~~t~~~m~~~g~slN~~SL~gl~laiG~lVDdaIVV~Eni~r~~~~~g~~~-------~~A 423 (1021)
T PF00873_consen 351 FLRNWRSALIVALSIPISILGTFIFMYLFGISLNIMSLAGLILAIGMLVDDAIVVVENIYRHLEEEGKSP-------LEA 423 (1021)
T ss_dssp HHTSHHHHHHHHHHHHHHHHHHHHHHHHTTTTBEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSH-------HHH
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHhHHHhcccccccceehHHHHHHHHHHhccch-------HHH
Confidence 4466665543333 333334444445554 45777776665555552 222333222222 1111 344
Q ss_pred HHHHHHHHH-----HHHHHHHHhcchhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhc----
Q 029396 83 FVRVALYLR-----CVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKH---- 153 (194)
Q Consensus 83 ~~~~a~~v~-----~~in~~l~~lr~l~~g~d~~~~lKv~~~L~vls~vGs~~s~~TLl~i~~v~~FTlP~lYe~y---- 153 (194)
+.+-+..+. ..+......+=-++.......+++-.....+++.+.|++ +..+-+|.++...
T Consensus 424 a~~~~~ev~~~i~~stlTti~vF~Pl~f~~G~~g~~~~~l~~~v~~al~~Sll----------val~~~P~l~~~~l~~~ 493 (1021)
T PF00873_consen 424 AIEGTKEVAPPILASTLTTIAVFLPLLFMPGIAGQFFRPLALTVIIALIASLL----------VALTLVPALAALFLKPK 493 (1021)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCGGGGSBHHHHHHHHHHHHHHHHHHHHHHH----------HHHTTHHHHHHHCS---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCchHHHHHHHHHHHHHHHHHHHH----------HHHHhhhhhhhhhhccc
Confidence 433333332 233344444445566667778888888888888888873 4445556555331
Q ss_pred ---hh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029396 154 ---ED-LADTCAEKALVELKKQYAVLDQTVLQ 181 (194)
Q Consensus 154 ---q~-~ID~~~~~~~~~~~~~y~~~~~kv~~ 181 (194)
++ ..++..+....++++.|.++-.++++
T Consensus 494 ~~~~~~~~~~~~~~~~~~l~~~Y~~lL~~~L~ 525 (1021)
T PF00873_consen 494 KKSSKKRFFSKFDRFFDRLQRGYRRLLRWALR 525 (1021)
T ss_dssp -TT-CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccchhhhhhhhhh
Confidence 11 23344555556677778777666553
No 14
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=49.60 E-value=1.7e+02 Score=28.92 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=37.5
Q ss_pred HHHHhcchhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhch
Q 029396 96 VASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHE 154 (194)
Q Consensus 96 ~~l~~lr~l~~g~d~~~~lKv~~~L~vls~vGs~~s~~TLl~i~~v~~FTlP~lYe~yq 154 (194)
....+++.+..|||+..|+-++++.+.+-|-| | ..=.+-.+++..++-+++-||+
T Consensus 501 ~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~-w---l~Y~~p~~Ll~~a~~Ml~~r~~ 555 (683)
T PF04842_consen 501 EIAKWLQKLASWEEPLKTLVFLALFLYIIYRG-W---LGYIFPAFLLFSAVFMLWLRYQ 555 (683)
T ss_pred HHHHHHHHHhhccCcchhHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHhh
Confidence 55678999999999999998776666554433 2 2223345555666677778887
No 15
>PHA03049 IMV membrane protein; Provisional
Probab=41.93 E-value=56 Score=22.55 Aligned_cols=28 Identities=0% Similarity=-0.161 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHH-HHHHhcchhcccc
Q 029396 81 DLFVRVALYLRCVFN-VASKMCQDVTTEP 108 (194)
Q Consensus 81 e~~~~~a~~v~~~in-~~l~~lr~l~~g~ 108 (194)
|..++.-...++.++ .-++.++++++|+
T Consensus 40 e~~e~~kT~yvD~L~~~hl~SfyklFs~~ 68 (68)
T PHA03049 40 EKMEDLKTGYVDKLKSSHLNSFYKLFSSK 68 (68)
T ss_pred cCchhhhhhHHhhcCHHHHHHHHHHhcCC
Confidence 334444444555554 3366777777663
No 16
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein.
Probab=39.15 E-value=2.5e+02 Score=24.03 Aligned_cols=12 Identities=33% Similarity=0.412 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 029396 44 FICHSIILTLST 55 (194)
Q Consensus 44 ~~s~ill~~l~~ 55 (194)
.+.+++.+.++.
T Consensus 56 ~l~~l~~~~~l~ 67 (341)
T TIGR02872 56 FIVLLIFLGIIG 67 (341)
T ss_pred HHHHHHHHHHHH
Confidence 333443333333
No 17
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=38.45 E-value=2e+02 Score=26.64 Aligned_cols=86 Identities=14% Similarity=0.062 Sum_probs=51.7
Q ss_pred eehhccCchhHHHHHHHHHHHHHHHHHhhccch-------hHHHHHHHHHHHHHHH---------HHHHHHhhhCCCCCC
Q 029396 9 QMFYFGGTGKSQQAYWLVGQSYGFFFECVGYHL-------VTFICHSIILTLSTLF---------LWSNLAAFTDMSPPQ 72 (194)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~l~~~Lf~~~~ysl-------iS~~s~ill~~l~~~f---------l~~~~~~~~~~~~p~ 72 (194)
-|.++|+-|+|- +.-+.+.++.++-|....+. +|+.++..+..+..+| +-..+.+.++..++.
T Consensus 81 ~irl~Gd~GvaI-At~~mT~vilvFaEVlPKt~Aa~~perva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~~~~ 159 (423)
T COG4536 81 GIRLYGDAGVAI-ATGVLTFVILVFAEVLPKTIAALYPERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINLDQ 159 (423)
T ss_pred HHHHhccchHHH-HHHHHHHHHHHHHHhcchHHhhhChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCccc
Confidence 356788888774 44455555555555555554 3334433333333332 234457888888888
Q ss_pred CCCcccCHHHHHHHHHHHHHHHH
Q 029396 73 FPEIKLPEDLFVRVALYLRCVFN 95 (194)
Q Consensus 73 ~p~~~isee~~~~~a~~v~~~in 95 (194)
.++-..|+|+.+-+++.-....+
T Consensus 160 ~~~~~~s~EElR~~v~~~~~e~~ 182 (423)
T COG4536 160 AVSQLSSKEELRTAVNESGSEGS 182 (423)
T ss_pred ccccccCHHHHHHHHHHhhcccc
Confidence 88888898887766655554443
No 18
>COG1458 Predicted DNA-binding protein containing PIN domain [General function prediction only]
Probab=37.39 E-value=48 Score=27.82 Aligned_cols=45 Identities=16% Similarity=0.313 Sum_probs=33.7
Q ss_pred HHHHhhhCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHhcchh
Q 029396 60 SNLAAFTDMSPPQFPEIKLPEDLFVRVALYLRCVFNVASKMCQDV 104 (194)
Q Consensus 60 ~~~~~~~~~~~p~~p~~~isee~~~~~a~~v~~~in~~l~~lr~l 104 (194)
..+...+-+.+|+--++.||-+...+.++.++..+|+++....+.
T Consensus 74 ~ki~twivkKtPnryevkiPa~ifyeyV~diR~RinkGlRvAE~~ 118 (221)
T COG1458 74 AKIETWIVKKTPNRYEVKIPAAIFYEYVEDIRERINKGLRVAEEA 118 (221)
T ss_pred HhhheeeEecCCCceeecCcHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 333334444555555999999999999999999999998765543
No 19
>PF10332 DUF2418: Protein of unknown function (DUF2418); InterPro: IPR018819 This entry represents the conserved 100 residue central region from a family of proteins found in fungi. It carries a characteristic EYD sequence motif. The function is not known.
Probab=34.18 E-value=1.9e+02 Score=21.26 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029396 131 DFLTILYLVFVVSLTLPMLYEKHEDLADTCAEKALVELKKQYAVLDQTVL 180 (194)
Q Consensus 131 s~~TLl~i~~v~~FTlP~lYe~yq~~ID~~~~~~~~~~~~~y~~~~~kv~ 180 (194)
+..+.+.+.++..+.+-.+-++|+.++..-.-...+-+ ++.++|..
T Consensus 39 ~~~~~~~~~~l~s~~l~~li~~f~~~ikD~~Ii~~ev~----~EYn~KfV 84 (99)
T PF10332_consen 39 TSFTTLFLMVLLSFQLYFLISRFEQLIKDKQIIHKEVM----HEYNTKFV 84 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH----HHHhcccc
Confidence 55566666667777778888899998877644443333 35566544
No 20
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=34.10 E-value=69 Score=23.56 Aligned_cols=33 Identities=27% Similarity=0.302 Sum_probs=27.8
Q ss_pred hhhHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 029396 145 TLPMLYEKHEDLADTCAEKALVELKKQYAVLDQ 177 (194)
Q Consensus 145 TlP~lYe~yq~~ID~~~~~~~~~~~~~y~~~~~ 177 (194)
+--.+|.+|+++-|+....+..++++.+...+.
T Consensus 64 ~Wr~~Y~~~~~e~e~~~~~~~~~L~~~~~~~~~ 96 (109)
T PF06881_consen 64 SWRELYEKLKKEREEKLKEATERLRKKIKKLQQ 96 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445789999999999999999999888877655
No 21
>COG3404 Methenyl tetrahydrofolate cyclohydrolase [Amino acid transport and metabolism]
Probab=33.79 E-value=2.8e+02 Score=23.33 Aligned_cols=30 Identities=23% Similarity=0.180 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhhHH-HhhchhHHHHHHHHH
Q 029396 135 ILYLVFVVSLTLPML-YEKHEDLADTCAEKA 164 (194)
Q Consensus 135 Ll~i~~v~~FTlP~l-Ye~yq~~ID~~~~~~ 164 (194)
.-.++.++-||.-+= |+.|+++++..++..
T Consensus 36 ~~L~~MV~~lt~gKk~Y~~~d~e~k~i~~~~ 66 (208)
T COG3404 36 CALASMVANLTRGKKGYEDYDDEMKEILEEL 66 (208)
T ss_pred HHHHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 345667888888877 999999999976543
No 22
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=33.23 E-value=4.8e+02 Score=25.65 Aligned_cols=59 Identities=15% Similarity=0.197 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Q 029396 125 IIGSWFDFLTILYLVFVVSLTLPMLYEKHEDLADTCAEKALVELKKQYAVLDQTVLQKLPISA 187 (194)
Q Consensus 125 ~vGs~~s~~TLl~i~~v~~FTlP~lYe~yq~~ID~~~~~~~~~~~~~y~~~~~kv~~kiP~~~ 187 (194)
.-|+|.+..-++.+++...|.+-..+.-||+..-.+++....+++ +.-+..+...|-|-
T Consensus 30 ~~~~~l~~i~~l~~~~~~i~~l~~~~~~~~~~~~~~i~~ls~~~~----~~~~~al~nmPiGi 88 (655)
T COG3887 30 SFNWWLSAIAVLLLVVFLIFLLLAFTLFYQDSDQNYISYLSYQAE----KSLEEALTNMPIGI 88 (655)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhCCceE
Confidence 335555555555555555555555555555555546676655555 55555677888763
No 23
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=29.67 E-value=12 Score=29.05 Aligned_cols=50 Identities=12% Similarity=0.189 Sum_probs=0.4
Q ss_pred chhccccCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Q 029396 102 QDVTTEPDIRKFLTATLVLWV--ISIIGSWFDFLTILYLVFVVSLTLPMLYE 151 (194)
Q Consensus 102 r~l~~g~d~~~~lKv~~~L~v--ls~vGs~~s~~TLl~i~~v~~FTlP~lYe 151 (194)
+|+..|||+..|..+.++.-+ .-+.-...|..|++......++..-.+++
T Consensus 2 ~dll~W~~~~~S~~v~~~~~~~~~l~~~~~~s~is~~s~~~~~~l~~~~~~~ 53 (169)
T PF02453_consen 2 ADLLLWRDPKKSGIVFGAILLFWLLFWLFNYSLISLVSYILLLLLAISFLYR 53 (169)
T ss_dssp ---------------------------------------------------T
T ss_pred ceeeEecCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999997776655 22222223555544433344444333333
No 24
>PF01452 Rota_NSP4: Rotavirus non structural protein; InterPro: IPR002107 This entry contains rotaviral non-structural protein 4 (NSP4) as well as related proteins: NSP5, NS28, and NCVP5. The final steps in the assembly of rotavirus occur in the lumen of the endoplasmic reticulum (ER). Targeting of the immature inner capsid particle (ICP) to this compartment is mediated by the cytoplasmic tail of NSP4, located in the ER membrane [, ].; PDB: 2O1J_D 1G1J_B 1G1I_B 2O1K_B 3MIW_A.
Probab=29.35 E-value=79 Score=25.50 Aligned_cols=28 Identities=14% Similarity=0.325 Sum_probs=18.3
Q ss_pred HhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 029396 150 YEKHEDLADTCAEKALVELKKQYAVLDQ 177 (194)
Q Consensus 150 Ye~yq~~ID~~~~~~~~~~~~~y~~~~~ 177 (194)
+---+|+||.++..+..++++|.+.+|.
T Consensus 88 qittkDeie~qmdrivkemrrQlemidk 115 (173)
T PF01452_consen 88 QITTKDEIEKQMDRIVKEMRRQLEMIDK 115 (173)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345789999999999999998877765
No 25
>PRK10945 gene expression modulator; Provisional
Probab=27.07 E-value=54 Score=22.95 Aligned_cols=16 Identities=25% Similarity=0.092 Sum_probs=11.2
Q ss_pred HhhhHHHhhchhHHHH
Q 029396 144 LTLPMLYEKHEDLADT 159 (194)
Q Consensus 144 FTlP~lYe~yq~~ID~ 159 (194)
=|+-+++|++++....
T Consensus 22 eTLEkvie~~~~~L~~ 37 (72)
T PRK10945 22 DTLERVIEKNKYELSD 37 (72)
T ss_pred HHHHHHHHHhhccCCH
Confidence 3677888887776654
No 26
>PF10444 Nbl1_Borealin_N: Nbl1 / Borealin N terminal; InterPro: IPR018851 This entry represents the N-terminal domain of borealin, and is also found in the N-terminal-Borealin-like (NBL; YHR199C-A) protein from Saccharomyces cerevisiae (Baker's yeast). NBL is a subunit of the conserved chromosomal passenger complex (CPC; Ipl1p-Sli15p-Bir1p-Nbl1p), which regulates mitotic chromosome segregation. It is not required for the kinase activity of the complex and it mediates the interaction of Sli15p and Bir1p [].; PDB: 2RAW_B 2RAX_Y 2QFA_B.
Probab=27.03 E-value=1.9e+02 Score=18.95 Aligned_cols=36 Identities=8% Similarity=0.180 Sum_probs=25.2
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCC
Q 029396 151 EKHEDLADTCAEKALVELKKQYAVLDQTV---LQKLPIS 186 (194)
Q Consensus 151 e~yq~~ID~~~~~~~~~~~~~y~~~~~kv---~~kiP~~ 186 (194)
+.++.|++.-++...++.+.+-+.++... +.+||++
T Consensus 8 ~~fd~Ev~~r~~~lr~~~~~~~~~~~~~~~~~l~riP~~ 46 (59)
T PF10444_consen 8 QNFDLEVEERIRRLRAQYENLLQSLRNRLEMELLRIPKA 46 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 56677788888887777777776776655 6788874
No 27
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=26.18 E-value=1.1e+02 Score=22.94 Aligned_cols=47 Identities=21% Similarity=0.310 Sum_probs=31.9
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhchhHHHHHHH
Q 029396 106 TEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHEDLADTCAE 162 (194)
Q Consensus 106 ~g~d~~~~lKv~~~L~vls~vGs~~s~~TLl~i~~v~~FTlP~lYe~yq~~ID~~~~ 162 (194)
++|..+.|+.... ++|..|--.|++|+-..++|-+|+ |-+++-+++-
T Consensus 4 TtERVKlfFEwFL------F~~AIFiAItIlYILLalL~EvPk----YIK~~VrYlV 50 (117)
T PF07234_consen 4 TTERVKLFFEWFL------FFGAIFIAITILYILLALLFEVPK----YIKELVRYLV 50 (117)
T ss_pred hHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHH
Confidence 3445555555432 357778889999999999999996 4444445443
No 28
>PF14940 TMEM219: Transmembrane 219
Probab=26.18 E-value=88 Score=26.56 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHhcchhcc
Q 029396 45 ICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLRCVFNVASKMCQDVTT 106 (194)
Q Consensus 45 ~s~ill~~l~~~fl~~~~~~~~~~~~p~~p~~~isee~~~~~a~~v~~~in~~l~~lr~l~~ 106 (194)
+..++++++++.|+= +..++++.+.+.||+ ...||.++..+-++=+
T Consensus 13 vF~l~Ll~~aI~~l~--Lg~yi~~~~l~nPDi--------------~~DWN~fL~~ls~l~f 58 (223)
T PF14940_consen 13 VFTLCLLLLAISFLC--LGYYIKRNELKNPDI--------------PQDWNTFLLSLSQLDF 58 (223)
T ss_pred HHHHHHHHHHHHHhe--eeeEecccCCCcccc--------------hhhHHHHHHhhcCeeE
Confidence 344555556665521 245668888899998 5678888877766543
No 29
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=23.78 E-value=2.2e+02 Score=18.63 Aligned_cols=25 Identities=20% Similarity=0.505 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHhh
Q 029396 128 SWFDFLTILYLVFVVSLTLPMLYEK 152 (194)
Q Consensus 128 s~~s~~TLl~i~~v~~FTlP~lYe~ 152 (194)
++-++.||+..-|++.++.-.+=+.
T Consensus 20 tyaDlmTLLl~fFVlL~s~s~~d~~ 44 (58)
T PF13677_consen 20 TYADLMTLLLAFFVLLFSMSSVDKE 44 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 3458899999999988887655433
No 30
>TIGR03875 RNA_lig_partner RNA ligase partner, MJ_0950 family. This uncharacterized protein family is found almost perfectly in the same set of genomes as the Pab1020 family described by model TIGR01209. These pairs are found mostly in Archaea, but also in a few bacteria (e.g. Alkalilimnicola ehrlichei MLHE-1, Aquifex aeolicus). While the partner protein has been described as homodimeric ligase that has RNA circularization activity, the function of this protein (also called UPF0278) is unknown.
Probab=23.69 E-value=73 Score=26.75 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=28.2
Q ss_pred CCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHhcc
Q 029396 68 MSPPQFPEIKLPEDLFVRVALYLRCVFNVASKMCQ 102 (194)
Q Consensus 68 ~~~p~~p~~~isee~~~~~a~~v~~~in~~l~~lr 102 (194)
+.+|..-++.||-+.+.+..+.++..||+++....
T Consensus 78 ~KsP~rye~~IPA~i~ye~I~e~R~RInkGLRVAE 112 (206)
T TIGR03875 78 KKSPNRYEVKIPAEIFYEYIEEVRERIDKGLRVAE 112 (206)
T ss_pred EcCCCeeeeeccHHHHHHHHHHHHHHHhcchhHHH
Confidence 34444448999999999999999999999876543
No 31
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.56 E-value=6e+02 Score=23.22 Aligned_cols=16 Identities=6% Similarity=0.299 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhCCCCc
Q 029396 172 YAVLDQTVLQKLPISA 187 (194)
Q Consensus 172 y~~~~~kv~~kiP~~~ 187 (194)
.+..+++..+.+|++.
T Consensus 249 re~a~~rm~~~Vp~Ad 264 (363)
T COG1377 249 REIARRRMMSDVPKAD 264 (363)
T ss_pred HHHHHHHHHhhCCCCC
Confidence 4455666677888764
No 32
>PF14800 DUF4481: Domain of unknown function (DUF4481)
Probab=22.44 E-value=2.7e+02 Score=24.79 Aligned_cols=82 Identities=11% Similarity=-0.083 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHHH---HHHHHHHHHHHHHHHhhhCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHH
Q 029396 22 AYWLVGQSYGFFFECVGYHLVTFICHS---IILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLRCVFNVAS 98 (194)
Q Consensus 22 ~~~~~~~l~~~Lf~~~~ysliS~~s~i---ll~~l~~~fl~~~~~~~~~~~~p~~p~~~isee~~~~~a~~v~~~in~~l 98 (194)
..|++-.++|..+ +++.+++++-.|. +++.+++.|+-..+.-.+.+ ++..++.-.+.-....|+.+
T Consensus 69 ~a~I~yivlw~~l-~Stl~l~slg~~wv~~Llv~l~ai~lt~~l~lv~~~----------~~rKlN~n~D~rLa~vN~~L 137 (308)
T PF14800_consen 69 VAVIFYIVLWANL-YSTLQLFSLGSHWVGWLLVNLAAIFLTMALILVFMR----------HQRKLNMNTDVRLAAVNEAL 137 (308)
T ss_pred HHHHHHHHHHHHH-HccchhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHhcccHHHHHHHHHHHH
Confidence 5677777777777 5677788877777 44444444532222111111 13333444566678899999
Q ss_pred HhcchhccccCHHHHH
Q 029396 99 KMCQDVTTEPDIRKFL 114 (194)
Q Consensus 99 ~~lr~l~~g~d~~~~l 114 (194)
.+.+-+....|+..--
T Consensus 138 ~rHkiLLGv~D~v~~c 153 (308)
T PF14800_consen 138 LRHKILLGVTDRVEGC 153 (308)
T ss_pred hhhheEEEeccccccc
Confidence 9999999989987643
No 33
>PF05062 RICH: RICH domain; InterPro: IPR007756 This domain is about 85 residues in length and very rich in charged residues, hence the name RICH (Rich In CHarged residues). It is found in secreted proteins such as PspC Q9KK19 from SWISSPROT, SpsA O33742 from SWISSPROT and IgA FC receptor P27951 from SWISSPROT from Streptococcus agalactiae. This domain could be involved in bacterial adherence or cell wall binding.
Probab=22.36 E-value=1.7e+02 Score=20.97 Aligned_cols=25 Identities=40% Similarity=0.413 Sum_probs=19.8
Q ss_pred HhhchhHHHHHHHHHHHHHHHHHHH
Q 029396 150 YEKHEDLADTCAEKALVELKKQYAV 174 (194)
Q Consensus 150 Ye~yq~~ID~~~~~~~~~~~~~y~~ 174 (194)
.+++.++||.++++....++++.++
T Consensus 4 ~~Ka~~~V~~y~~kiL~ei~~~L~k 28 (82)
T PF05062_consen 4 RKKAKDEVDEYMEKILSEIKKQLDK 28 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999888655444
No 34
>KOG1889 consensus Putative phosphoinositide phosphatase [Lipid transport and metabolism]
Probab=21.93 E-value=2.4e+02 Score=27.29 Aligned_cols=54 Identities=11% Similarity=0.105 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCc
Q 029396 23 YWLVGQSYGFFFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEI 76 (194)
Q Consensus 23 ~~~~~~l~~~Lf~~~~ysliS~~s~ill~~l~~~fl~~~~~~~~~~~~p~~p~~ 76 (194)
.|++.+.+.+-+.+..=+++-.+-+....++...+++.+..+++|||.+..|.+
T Consensus 524 ~lva~~m~~is~l~~~~~l~~~l~w~~~~~~s~~~i~~~g~~fvnwPrl~~p~~ 577 (579)
T KOG1889|consen 524 FLVALSMFIISLLFSTPNLLYRLFWFAIMVVSIAVILINGDQFVNWPRLVLPQF 577 (579)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhheechHHhcCCccccCccc
Confidence 344433333333333456666666777777777788888899999998887754
No 35
>PHA02677 hypothetical protein; Provisional
Probab=21.84 E-value=1.8e+02 Score=21.84 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhhhHHHhhchhHHHHHHHHH
Q 029396 132 FLTILYLVFVVSLTLPMLYEKHEDLADTCAEKA 164 (194)
Q Consensus 132 ~~TLl~i~~v~~FTlP~lYe~yq~~ID~~~~~~ 164 (194)
|+-|+|.-.+.=.-+|.+-||-+.|=|.+..-.
T Consensus 5 FLilCYFILIFNIiVP~I~EKlR~E~~Af~ky~ 37 (108)
T PHA02677 5 FLIICYFVLIFNILVPGIFEKLRQEHAAFDRLA 37 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888899999999999988886544
No 36
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=21.83 E-value=4.6e+02 Score=27.79 Aligned_cols=54 Identities=11% Similarity=0.397 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhchhHHHHHHHHH
Q 029396 109 DIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHEDLADTCAEKA 164 (194)
Q Consensus 109 d~~~~lKv~~~L~vls~vGs~~s~~TLl~i~~v~~FTlP~lYe~yq~~ID~~~~~~ 164 (194)
+....+-..++.|+++++| |+++.|.++...+++--=..++++..-|...+.+-
T Consensus 157 s~~i~l~~~v~Swifg~~~--fs~~slffii~~~~~vY~~~~~rv~rnird~v~~~ 210 (1227)
T COG5038 157 SVAIVLIGSVASWIFGYLG--FSFASLFFIILVTMYVYRTCIKRVRRNIRDLVQQE 210 (1227)
T ss_pred hhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356666777778888875 79999999998888877777777777766665443
No 37
>PRK04358 hypothetical protein; Provisional
Probab=21.79 E-value=85 Score=26.58 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=29.0
Q ss_pred CCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHhcch
Q 029396 68 MSPPQFPEIKLPEDLFVRVALYLRCVFNVASKMCQD 103 (194)
Q Consensus 68 ~~~p~~p~~~isee~~~~~a~~v~~~in~~l~~lr~ 103 (194)
+.+|.--++.||-+-+.+..+.++..||+++....+
T Consensus 82 ~KsP~ry~v~IPA~i~ye~I~~mR~RInkGLRVAEe 117 (217)
T PRK04358 82 KKSPNRYEIKIPAEIFYEYIEDMRERINKGLRVAEE 117 (217)
T ss_pred EcCCCceeeeccHHHHHHHHHHHHHHHhcchHHHHH
Confidence 334444489999999999999999999998876544
No 38
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=20.80 E-value=5.1e+02 Score=22.69 Aligned_cols=75 Identities=15% Similarity=0.182 Sum_probs=49.8
Q ss_pred CcccCHHHHHHHHHHHHHHHHHHHHhcchhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhch
Q 029396 75 EIKLPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHE 154 (194)
Q Consensus 75 ~~~isee~~~~~a~~v~~~in~~l~~lr~l~~g~d~~~~lKv~~~L~vls~vGs~~s~~TLl~i~~v~~FTlP~lYe~yq 154 (194)
++.+| +.+++.|..+....- .. .+..|+++.- ..++.+|+.|.+-. +.+=|
T Consensus 204 ~L~l~-~~v~~~a~ei~~~~~---~~--g~~~Gk~P~g--lAaaaiy~as~l~~---------------------~~~tq 254 (285)
T COG1405 204 KLGLS-DEVRRKAIEIVKKAK---RA--GLTAGKSPAG--LAAAAIYLASLLLG---------------------ERRTQ 254 (285)
T ss_pred HcCCC-HHHHHHHHHHHHHHH---Hh--CcccCCCchh--HHHHHHHHHHHHhC---------------------CchHH
Confidence 67788 444444444333322 21 2223888874 45888888887766 77888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 029396 155 DLADTCAEKALVELKKQYAVLDQT 178 (194)
Q Consensus 155 ~~ID~~~~~~~~~~~~~y~~~~~k 178 (194)
.+|-+...-.-..+++.|+++-+.
T Consensus 255 ~eva~v~~vtevTIrnrykel~~~ 278 (285)
T COG1405 255 KEVAKVAGVTEVTIRNRYKELADA 278 (285)
T ss_pred HHHHHHhCCeeeHHHHHHHHHHHh
Confidence 888888887777888888777553
No 39
>TIGR02831 spo_II_M stage II sporulation protein M. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This predicted integral membrane protein is designated stage II sporulation protein M.
Probab=20.43 E-value=4.8e+02 Score=21.29 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhHHHhhch
Q 029396 111 RKFLTATLVLWVISI--IGSWFDFLTILYLVFVVSLTLPMLYEKHE 154 (194)
Q Consensus 111 ~~~lKv~~~L~vls~--vGs~~s~~TLl~i~~v~~FTlP~lYe~yq 154 (194)
..-++....+|+++. +|--.-+..+..=|+...||+-.+.++++
T Consensus 71 ~nn~~~~~li~~lGl~~~Gip~i~~~l~~nGf~~Gf~v~~~v~~~g 116 (200)
T TIGR02831 71 FNNIKYVGLMWILGLSIIGLPIILILDFLKGFVVGFTVGFLVNQLG 116 (200)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455667777776554 67766666688889999999999988876
No 40
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=20.37 E-value=5.5e+02 Score=21.98 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=30.3
Q ss_pred HHHHhcchhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhchhHHH
Q 029396 96 VASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHEDLAD 158 (194)
Q Consensus 96 ~~l~~lr~l~~g~d~~~~lKv~~~L~vls~vGs~~s~~TLl~i~~v~~FTlP~lYe~yq~~ID 158 (194)
..++..|+...|.++.+- .+.+-.+.+++++.+..=.+|.|+++++-
T Consensus 214 ~iie~~R~~~~~~~~~~~----------------~~~~~~~~~~li~l~vg~~~~~~~~~~~~ 260 (263)
T COG1682 214 HIIESFRAPLLGGDVPDL----------------HLLVYILLLTLILLFVGLLLFRKFRKRFV 260 (263)
T ss_pred HHHHHHHHHHhCCCcccH----------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 778999999999998722 22223333444555555567777777653
Done!