Query 029396
Match_columns 194
No_of_seqs 108 out of 392
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 20:07:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029396.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029396hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1i5za1 a.4.5.4 (A:138-206) Ca 37.6 16 0.0011 21.9 3.4 30 75-104 27-56 (69)
2 d1h2vc1 a.118.1.14 (C:29-290) 34.8 59 0.0043 24.5 7.3 98 58-168 57-175 (262)
3 d2axtl1 f.23.31.1 (L:1-37) Pho 25.3 29 0.0021 18.7 2.6 20 134-153 15-34 (37)
4 d2je6a2 d.101.1.1 (A:192-275) 21.6 60 0.0044 19.6 4.3 26 153-178 56-81 (84)
5 d1cjba_ c.61.1.1 (A:) Hypoxant 18.5 20 0.0014 26.9 1.4 30 143-172 28-64 (228)
6 d2nn6e2 d.101.1.1 (E:192-285) 18.0 81 0.0059 19.6 4.4 27 153-179 57-83 (94)
7 d2gaua1 a.4.5.4 (A:152-232) Tr 17.1 54 0.0039 19.6 3.2 30 75-104 27-56 (81)
8 d351ca_ a.3.1.1 (A:) Cytochrom 16.4 49 0.0035 19.8 2.8 21 72-92 60-80 (82)
9 d1ntya1 a.87.1.1 (A:1231-1414) 15.7 71 0.0052 22.0 3.9 33 63-99 148-180 (184)
10 d1cora_ a.3.1.1 (A:) Cytochrom 14.3 55 0.004 19.5 2.6 20 73-92 61-80 (82)
No 1
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=37.58 E-value=16 Score=21.91 Aligned_cols=30 Identities=20% Similarity=0.156 Sum_probs=26.7
Q ss_pred CcccCHHHHHHHHHHHHHHHHHHHHhcchh
Q 029396 75 EIKLPEDLFVRVALYLRCVFNVASKMCQDV 104 (194)
Q Consensus 75 ~~~isee~~~~~a~~v~~~in~~l~~lr~l 104 (194)
++.+|++..-+....-++.+|..++.+++-
T Consensus 27 ~l~lt~~~lA~~~G~sRetvsr~L~~l~~~ 56 (69)
T d1i5za1 27 QIKITRQEIGQIVGCSRETVGRILKMLEDQ 56 (69)
T ss_dssp EEECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred ecCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 677999999999999999999999988764
No 2
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.78 E-value=59 Score=24.50 Aligned_cols=98 Identities=14% Similarity=0.164 Sum_probs=51.3
Q ss_pred HHHHHHhhhCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHhcchhccccCHHHHHHHHHHHHHHHHH--HHHHHHHHH
Q 029396 58 LWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISII--GSWFDFLTI 135 (194)
Q Consensus 58 l~~~~~~~~~~~~p~~p~~~isee~~~~~a~~v~~~in~~l~~lr~l~~g~d~~~~lKv~~~L~vls~v--Gs~~s~~TL 135 (194)
+|+.+.+++|-..| + +.++.++++...+...+++ --+++.+..+++++.|+....+ ++.++.+..
T Consensus 57 ~yA~Lv~llN~~~~---e--~g~~~l~~~~~~f~~~l~~--------~~~~~~~~llrFla~L~n~~Vv~~~~i~~ll~~ 123 (262)
T d1h2vc1 57 IYTTLVGLLNARNY---N--FGGEFVEAMIRQLKESLKA--------NNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFEN 123 (262)
T ss_dssp HHHHHHHHHHTTCH---H--HHHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHHTTSBCHHHHHHHHHH
T ss_pred HHHHHHHHHccCcH---H--HHHHHHHHHHHHHHHHHHh--------CCHHHHHHHHHHHHHHccCCCCcHhHHHHHHHH
Confidence 56666666654332 2 2344444444444443332 1234455666777777643333 223333333
Q ss_pred HH---------------HHHHHHHhhhH----HHhhchhHHHHHHHHHHHHH
Q 029396 136 LY---------------LVFVVSLTLPM----LYEKHEDLADTCAEKALVEL 168 (194)
Q Consensus 136 l~---------------i~~v~~FTlP~----lYe~yq~~ID~~~~~~~~~~ 168 (194)
+. ++...+-|+|. +||+++++.|+.++.+...+
T Consensus 124 ll~~~~e~~~~~~~~d~~~~~vL~~LP~~g~~l~~~~~~~~~~ll~~i~~y~ 175 (262)
T d1h2vc1 124 FVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFANTESYL 175 (262)
T ss_dssp HHHGGGCSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 32 34456667665 47788888888877765544
No 3
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=25.28 E-value=29 Score=18.66 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhhhHHHhhc
Q 029396 134 TILYLVFVVSLTLPMLYEKH 153 (194)
Q Consensus 134 TLl~i~~v~~FTlP~lYe~y 153 (194)
|-+|.|.+..|.+-.++..|
T Consensus 15 tsLy~GlLlifvl~vLFssY 34 (37)
T d2axtl1 15 TSLYLGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 56777888888877777665
No 4
>d2je6a2 d.101.1.1 (A:192-275) Exosome complex exonuclease 2, ECX2 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=21.61 E-value=60 Score=19.64 Aligned_cols=26 Identities=15% Similarity=0.014 Sum_probs=21.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Q 029396 153 HEDLADTCAEKALVELKKQYAVLDQT 178 (194)
Q Consensus 153 yq~~ID~~~~~~~~~~~~~y~~~~~k 178 (194)
-+++++++++.+.++.++.++.+++.
T Consensus 56 ~~~~i~~~i~~A~~~~~~l~~~l~~~ 81 (84)
T d2je6a2 56 SLQDIDQAENTARSTAVKLLEELKKH 81 (84)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999888777654
No 5
>d1cjba_ c.61.1.1 (A:) Hypoxanthine-guanine PRTase (HGPRTase) {Plasmodium falciparum [TaxId: 5833]}
Probab=18.52 E-value=20 Score=26.93 Aligned_cols=30 Identities=30% Similarity=0.478 Sum_probs=22.2
Q ss_pred HHhhhHHHhhc-------hhHHHHHHHHHHHHHHHHH
Q 029396 143 SLTLPMLYEKH-------EDLADTCAEKALVELKKQY 172 (194)
Q Consensus 143 ~FTlP~lYe~y-------q~~ID~~~~~~~~~~~~~y 172 (194)
+|++|..|++| +++|++-++..-.++.+.|
T Consensus 28 ~f~~p~~y~~~~~~Vli~~~~I~~rI~rLA~eI~~~y 64 (228)
T d1cjba_ 28 SFMIPAHYKKYLTKVLVPNGVIKNRIEKLAYDIKKVY 64 (228)
T ss_dssp GSCCCTTTGGGEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred hccCccchhccccEEecCHHHHHHHHHHHHHHHHHHc
Confidence 58999999988 5567777777766666554
No 6
>d2nn6e2 d.101.1.1 (E:192-285) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.97 E-value=81 Score=19.60 Aligned_cols=27 Identities=19% Similarity=-0.060 Sum_probs=22.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 029396 153 HEDLADTCAEKALVELKKQYAVLDQTV 179 (194)
Q Consensus 153 yq~~ID~~~~~~~~~~~~~y~~~~~kv 179 (194)
..++|+++++.+....++.++.+++.+
T Consensus 57 ~~~~i~~~i~~A~~~~~el~~~l~~~L 83 (94)
T d2nn6e2 57 DPESIFEMMETGKRVGKVLHASLQSVV 83 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999998888877754
No 7
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=17.10 E-value=54 Score=19.60 Aligned_cols=30 Identities=7% Similarity=-0.106 Sum_probs=25.4
Q ss_pred CcccCHHHHHHHHHHHHHHHHHHHHhcchh
Q 029396 75 EIKLPEDLFVRVALYLRCVFNVASKMCQDV 104 (194)
Q Consensus 75 ~~~isee~~~~~a~~v~~~in~~l~~lr~l 104 (194)
++.+|++..-+.+..-++.+|..+..+++-
T Consensus 27 ~~~lt~~eLA~~~G~sretvsr~L~~l~~~ 56 (81)
T d2gaua1 27 SIYLSREELATLSNMTVSNAIRTLSTFVSE 56 (81)
T ss_dssp SCCCCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred eecCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 667899999999888899999998887764
No 8
>d351ca_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=16.41 E-value=49 Score=19.80 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=16.7
Q ss_pred CCCCcccCHHHHHHHHHHHHH
Q 029396 72 QFPEIKLPEDLFVRVALYLRC 92 (194)
Q Consensus 72 ~~p~~~isee~~~~~a~~v~~ 92 (194)
.-|.+.+|+|++..+++-+++
T Consensus 60 ~MP~~~lsd~ei~~la~Yi~S 80 (82)
T d351ca_ 60 PMPPNAVSDDEAQTLAKWVLS 80 (82)
T ss_dssp CBCCCSCCHHHHHHHHHHHHT
T ss_pred cccccCCCHHHHHHHHHHHHh
Confidence 346778999999988887764
No 9
>d1ntya1 a.87.1.1 (A:1231-1414) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.66 E-value=71 Score=21.98 Aligned_cols=33 Identities=18% Similarity=-0.050 Sum_probs=25.5
Q ss_pred HhhhCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Q 029396 63 AAFTDMSPPQFPEIKLPEDLFVRVALYLRCVFNVASK 99 (194)
Q Consensus 63 ~~~~~~~~p~~p~~~isee~~~~~a~~v~~~in~~l~ 99 (194)
..+++.+|+.+||+ +.|.+....+...+|.+..
T Consensus 148 ~~llk~T~~~~~dl----~~al~~i~~v~~~ine~~~ 180 (184)
T d1ntya1 148 KELLTCCEEGKGEI----KDGLEVMLSVPKRANDAMH 180 (184)
T ss_dssp HHHHHTSCTTCTTH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHH----HHHHHHHHHHHHHHHHHHH
Confidence 45677889999986 3466778888999998764
No 10
>d1cora_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas stutzeri [TaxId: 316]}
Probab=14.30 E-value=55 Score=19.47 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=16.2
Q ss_pred CCCcccCHHHHHHHHHHHHH
Q 029396 73 FPEIKLPEDLFVRVALYLRC 92 (194)
Q Consensus 73 ~p~~~isee~~~~~a~~v~~ 92 (194)
-|.+.+|+|++..+++-+++
T Consensus 61 Mp~~~lsdeei~~la~Yi~S 80 (82)
T d1cora_ 61 MPPNPVTEEEAKILAEWILS 80 (82)
T ss_dssp BCCCSCCHHHHHHHHHHHHS
T ss_pred ccccCCCHHHHHHHHHHHHh
Confidence 36788999999998887753
Done!