BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029397
         (194 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9Z301|PER2_RAT Period circadian protein homolog 2 OS=Rattus norvegicus GN=Per2
           PE=1 SV=1
          Length = 1257

 Score = 32.0 bits (71), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 16/113 (14%)

Query: 2   VVRVIESKNRAETLKFLCSYGGKILPRSM-------DGQLRYVGGLTRVLSVERSISF-- 52
           V+R +ES N A TLK  C +   I  R          G+      +T    V   +S   
Sbjct: 593 VIRYLESCNEAATLKRKCEFPANIPSRKATVSPGLHSGEAARSSKVTSHTEVSAHLSSLA 652

Query: 53  ----AELMVKLGEFCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAA 101
               AE +V L   C YS T+   +  GD +    +++ +D+A+  E  D AA
Sbjct: 653 LPGKAESVVSLTSQCSYSSTI---VHVGDKKPQPELETVEDVASGPESQDDAA 702


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.136    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,827,348
Number of Sequences: 539616
Number of extensions: 3108759
Number of successful extensions: 9875
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 9820
Number of HSP's gapped (non-prelim): 122
length of query: 194
length of database: 191,569,459
effective HSP length: 111
effective length of query: 83
effective length of database: 131,672,083
effective search space: 10928782889
effective search space used: 10928782889
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)