Query 029397
Match_columns 194
No_of_seqs 114 out of 185
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 12:16:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029397.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029397hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06410 PB1_UP2 Uncharacterize 100.0 2E-43 4.4E-48 269.0 11.0 94 18-111 1-97 (97)
2 smart00666 PB1 PB1 domain. Pho 99.5 5.1E-13 1.1E-17 94.7 10.2 75 32-111 4-81 (81)
3 cd05992 PB1 The PB1 domain is 99.1 7.6E-10 1.6E-14 77.9 9.2 74 33-111 4-81 (81)
4 PF00564 PB1: PB1 domain; Int 99.1 9.2E-10 2E-14 77.9 9.1 75 34-112 6-83 (84)
5 cd06407 PB1_NLP A PB1 domain i 98.8 7.1E-08 1.5E-12 71.7 9.8 70 38-111 8-81 (82)
6 cd06408 PB1_NoxR The PB1 domai 98.3 2.4E-06 5.2E-11 64.9 7.8 69 38-110 10-85 (86)
7 cd06398 PB1_Joka2 The PB1 doma 98.3 8.5E-06 1.8E-10 61.8 10.0 74 34-111 5-87 (91)
8 cd06405 PB1_Mekk2_3 The PB1 do 98.3 7.5E-06 1.6E-10 61.7 8.5 70 38-111 8-77 (79)
9 cd06396 PB1_NBR1 The PB1 domai 98.1 3.4E-05 7.4E-10 58.1 9.2 69 38-111 8-79 (81)
10 cd06401 PB1_TFG The PB1 domain 98.1 2.1E-05 4.6E-10 59.5 7.5 66 38-110 8-80 (81)
11 cd06404 PB1_aPKC PB1 domain is 98.1 4.6E-05 9.9E-10 57.9 9.3 72 37-112 7-82 (83)
12 cd06402 PB1_p62 The PB1 domain 97.6 0.00062 1.4E-08 51.8 8.6 65 40-111 15-85 (87)
13 cd06397 PB1_UP1 Uncharacterize 97.4 0.0007 1.5E-08 51.5 7.3 59 38-99 8-69 (82)
14 cd06403 PB1_Par6 The PB1 domai 97.2 0.0036 7.7E-08 47.5 8.7 67 36-110 6-77 (80)
15 cd06406 PB1_P67 A PB1 domain i 96.9 0.0034 7.4E-08 47.4 6.4 60 33-97 6-68 (80)
16 cd06399 PB1_P40 The PB1 domain 96.5 0.015 3.2E-07 45.3 7.1 60 38-100 12-76 (92)
17 cd06409 PB1_MUG70 The MUG70 pr 96.4 0.036 7.7E-07 42.2 8.8 70 38-111 9-84 (86)
18 cd06411 PB1_p51 The PB1 domain 95.6 0.056 1.2E-06 40.8 6.6 55 41-96 8-65 (78)
19 cd06395 PB1_Map2k5 PB1 domain 91.8 0.43 9.3E-06 37.0 5.1 50 48-100 21-72 (91)
20 KOG0695 Serine/threonine prote 87.6 6.5 0.00014 38.2 10.5 84 36-123 21-108 (593)
21 cd01812 BAG1_N Ubiquitin-like 84.8 3.1 6.8E-05 28.2 5.2 38 34-72 5-45 (71)
22 PF14560 Ubiquitin_2: Ubiquiti 83.9 3.5 7.6E-05 29.8 5.4 29 44-72 18-49 (87)
23 cd01803 Ubiquitin Ubiquitin. U 79.4 6.4 0.00014 26.8 5.2 38 34-71 5-45 (76)
24 cd01807 GDX_N ubiquitin-like d 78.4 7.3 0.00016 27.2 5.3 65 34-111 5-72 (74)
25 cd01796 DDI1_N DNA damage indu 78.0 6 0.00013 27.8 4.8 35 38-72 8-45 (71)
26 cd01794 DC_UbP_C dendritic cel 77.8 4.5 9.7E-05 28.7 4.1 33 33-65 2-34 (70)
27 cd00196 UBQ Ubiquitin-like pro 77.7 11 0.00024 22.0 5.3 39 35-73 3-44 (69)
28 cd01809 Scythe_N Ubiquitin-lik 76.2 10 0.00022 25.6 5.4 38 34-71 5-45 (72)
29 cd01806 Nedd8 Nebb8-like ubiq 76.0 9.9 0.00021 25.9 5.3 42 35-78 6-50 (76)
30 PTZ00044 ubiquitin; Provisiona 73.5 12 0.00025 25.9 5.3 38 35-72 6-46 (76)
31 cd01799 Hoil1_N Ubiquitin-like 71.7 9.2 0.0002 27.6 4.5 35 37-72 10-47 (75)
32 cd01805 RAD23_N Ubiquitin-like 71.5 11 0.00023 26.1 4.7 32 34-65 5-36 (77)
33 cd01800 SF3a120_C Ubiquitin-li 68.3 14 0.00029 26.2 4.7 63 37-112 5-70 (76)
34 cd01810 ISG15_repeat2 ISG15 ub 67.7 16 0.00035 25.5 4.9 39 34-72 3-44 (74)
35 KOG3206 Alpha-tubulin folding 67.1 6.5 0.00014 35.1 3.4 61 46-112 19-80 (234)
36 cd01798 parkin_N amino-termina 66.3 19 0.00041 24.7 5.0 38 35-72 4-44 (70)
37 cd01769 UBL Ubiquitin-like dom 61.7 28 0.0006 22.7 5.0 37 35-71 3-42 (69)
38 smart00213 UBQ Ubiquitin homol 61.1 21 0.00046 23.0 4.3 37 35-72 6-45 (64)
39 PF11976 Rad60-SLD: Ubiquitin- 60.9 9.2 0.0002 26.1 2.6 39 34-72 5-47 (72)
40 cd01789 Alp11_N Ubiquitin-like 59.3 18 0.00039 26.4 4.1 28 44-71 17-47 (84)
41 TIGR03649 ergot_EASG ergot alk 59.1 9 0.00019 32.0 2.8 62 39-101 189-251 (285)
42 cd01802 AN1_N ubiquitin-like d 53.8 38 0.00081 25.9 5.2 39 34-72 32-73 (103)
43 TIGR00601 rad23 UV excision re 52.9 2E+02 0.0044 27.0 10.9 69 34-115 5-79 (378)
44 cd01793 Fubi Fubi ubiquitin-li 50.1 56 0.0012 22.7 5.2 35 38-72 7-44 (74)
45 cd01804 midnolin_N Ubiquitin-l 49.8 51 0.0011 23.5 5.1 41 37-77 9-50 (78)
46 KOG2094 Predicted DNA damage i 48.1 59 0.0013 31.7 6.5 83 21-112 335-439 (490)
47 cd04894 ACT_ACR-like_1 ACT dom 47.6 38 0.00083 25.3 4.1 41 20-64 23-69 (69)
48 PF00240 ubiquitin: Ubiquitin 44.5 61 0.0013 21.7 4.6 35 37-71 3-40 (69)
49 KOG0672 Halotolerance protein 43.6 68 0.0015 28.6 5.7 66 29-97 16-90 (218)
50 PF03902 Gal4_dimer: Gal4-like 43.3 2.9 6.3E-05 30.2 -2.2 31 69-99 19-49 (57)
51 cd01813 UBP_N UBP ubiquitin pr 42.8 41 0.00088 24.0 3.6 29 38-66 8-36 (74)
52 cd01763 Sumo Small ubiquitin-r 41.6 69 0.0015 23.3 4.8 39 34-72 16-57 (87)
53 PF14259 RRM_6: RNA recognitio 40.5 36 0.00078 22.4 2.9 51 45-98 5-60 (70)
54 PRK10667 Hha toxicity attenuat 40.0 24 0.00052 28.9 2.3 37 48-98 44-80 (122)
55 cd02974 AhpF_NTD_N Alkyl hydro 35.1 1.2E+02 0.0025 22.9 5.2 47 54-110 5-54 (94)
56 PF10757 YbaJ: Biofilm formati 33.3 45 0.00098 27.4 2.9 37 48-98 44-80 (122)
57 cd00266 MADS_SRF_like SRF-like 33.0 1E+02 0.0023 22.6 4.6 51 47-100 15-72 (83)
58 COG4492 PheB ACT domain-contai 32.7 1.9E+02 0.0042 24.5 6.5 74 35-109 64-147 (150)
59 cd01791 Ubl5 UBL5 ubiquitin-li 32.3 1.5E+02 0.0033 21.1 5.3 34 39-72 11-47 (73)
60 COG1756 Mra1 Uncharacterized c 31.4 90 0.0019 27.9 4.6 67 30-115 90-157 (223)
61 PRK10665 nitrogen regulatory p 31.1 2E+02 0.0042 22.5 6.1 79 42-121 3-104 (112)
62 cd01792 ISG15_repeat1 ISG15 ub 31.1 1.9E+02 0.0042 20.4 5.9 32 35-66 8-39 (80)
63 PRK14462 ribosomal RNA large s 28.9 2.5E+02 0.0053 26.2 7.3 65 43-117 237-304 (356)
64 cd01808 hPLIC_N Ubiquitin-like 28.9 1.7E+02 0.0037 20.0 4.9 27 38-65 9-35 (71)
65 KOG0028 Ca2+-binding protein ( 28.8 34 0.00074 29.5 1.6 50 50-99 86-153 (172)
66 PF07888 CALCOCO1: Calcium bin 27.3 62 0.0013 32.2 3.2 46 7-52 63-110 (546)
67 PF00106 adh_short: short chai 27.1 1.5E+02 0.0032 22.2 4.6 62 39-114 24-89 (167)
68 COG0621 MiaB 2-methylthioadeni 26.9 2.5E+02 0.0054 27.1 7.1 57 51-119 281-342 (437)
69 PF04599 Pox_G5: Poxvirus G5 p 26.9 56 0.0012 31.7 2.8 29 82-110 41-71 (425)
70 KOG3606 Cell polarity protein 26.2 1.3E+02 0.0029 28.3 5.0 54 38-94 26-84 (358)
71 PRK12338 hypothetical protein; 25.5 1.6E+02 0.0035 27.1 5.4 61 37-99 202-268 (319)
72 TIGR03831 YgiT_finger YgiT-typ 24.5 37 0.00079 21.2 0.8 22 22-44 5-27 (46)
73 PF09822 ABC_transp_aux: ABC-t 24.3 1.8E+02 0.0039 24.7 5.2 61 50-113 10-70 (271)
74 PRK10858 nitrogen regulatory p 23.8 3.1E+02 0.0067 21.4 6.0 80 42-122 3-105 (112)
75 TIGR02447 yiiD_Cterm thioester 23.3 2.2E+02 0.0048 22.3 5.1 41 66-109 74-115 (138)
76 PF11575 FhuF_C: FhuF 2Fe-2S C 23.3 60 0.0013 19.0 1.5 11 68-78 5-15 (22)
77 cd01797 NIRF_N amino-terminal 22.7 2.3E+02 0.005 20.3 4.8 38 35-72 6-48 (78)
78 PRK00377 cbiT cobalt-precorrin 22.5 2.4E+02 0.0052 22.8 5.4 72 35-106 60-141 (198)
79 cd01787 GRB7_RA RA (RAS-associ 21.9 2.4E+02 0.0053 21.6 4.9 56 37-100 10-65 (85)
80 PF11543 UN_NPL4: Nuclear pore 21.2 1E+02 0.0022 22.7 2.7 26 39-65 14-39 (80)
81 PRK15317 alkyl hydroperoxide r 20.9 2.2E+02 0.0047 26.8 5.4 46 53-108 4-52 (517)
82 smart00295 B41 Band 4.1 homolo 20.8 4E+02 0.0086 20.9 6.2 44 34-77 8-55 (207)
83 PRK13696 hypothetical protein; 20.5 45 0.00097 24.3 0.6 41 48-96 21-61 (62)
No 1
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=100.00 E-value=2e-43 Score=268.97 Aligned_cols=94 Identities=61% Similarity=1.016 Sum_probs=90.5
Q ss_pred EeeeCCEeeeCCCCCCeEeecCceEEEEecCCCCHHHHHHHHHhhcCCc--EEEEeecCCCCCCcEEeecChhHHHHHHH
Q 029397 18 LCSYGGKILPRSMDGQLRYVGGLTRVLSVERSISFAELMVKLGEFCGYS--VTLRCQLPNGDLETLISIKSDDDLANLIE 95 (194)
Q Consensus 18 mCSyGG~I~PRp~Dg~LrYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~~--v~lKYQLP~edLDaLISVssDeDL~nM~e 95 (194)
||||||+|+||++||+|+|+|||||||+|+|+++|+||++||+++++.+ ++||||||+||||+||||++||||+|||+
T Consensus 1 ~cs~GG~i~pr~~dg~l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~~~lky~Lp~edld~Lisv~~DeDl~~M~~ 80 (97)
T cd06410 1 LCSYGGRILPRPPDGQLRYVGGETRIVSVDRSISFKELVSKLSELFGAGVVVTLKYQLPDEDLDALISVSNDEDLKNMME 80 (97)
T ss_pred CcccCCEEeCcCCCCCEEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCceEEEEEcCCCCcceeEEecCcHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999885 59999999999999999999999999999
Q ss_pred HHhhhCC-CCceEEEEe
Q 029397 96 EYDRAAP-SSKIRAILS 111 (194)
Q Consensus 96 EYdr~~~-s~rlRvFLF 111 (194)
||+++.. ++|||+|||
T Consensus 81 e~~~~~~~~~rirvflf 97 (97)
T cd06410 81 EYDRLSGGSARLRVFLF 97 (97)
T ss_pred hhccccCCCceEEEEEC
Confidence 9999853 899999998
No 2
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=99.47 E-value=5.1e-13 Score=94.73 Aligned_cols=75 Identities=48% Similarity=0.671 Sum_probs=66.4
Q ss_pred CCeEeecCceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEE
Q 029397 32 GQLRYVGGLTRVLSVERSISFAELMVKLGEFCGY---SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRA 108 (194)
Q Consensus 32 g~LrYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRv 108 (194)
.|++| ||++|.+.|+++++|.||+.++.+.++. .+.|||+ +||-| +|++++|+||..||+.+.+.. ...+|+
T Consensus 4 vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~--Dedgd-~v~l~sd~Dl~~a~~~~~~~~-~~~l~l 78 (81)
T smart00666 4 VKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQ--DEDGD-LVSLTSDEDLEEAIEEYDSLG-SKKLRL 78 (81)
T ss_pred EEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEE--CCCCC-EEEecCHHHHHHHHHHHHHcC-CceEEE
Confidence 56788 9999999999999999999999999987 6999999 67645 999999999999999998753 467888
Q ss_pred EEe
Q 029397 109 ILS 111 (194)
Q Consensus 109 FLF 111 (194)
++|
T Consensus 79 ~v~ 81 (81)
T smart00666 79 HVF 81 (81)
T ss_pred EeC
Confidence 875
No 3
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=99.10 E-value=7.6e-10 Score=77.89 Aligned_cols=74 Identities=39% Similarity=0.562 Sum_probs=59.1
Q ss_pred CeEeecCceEEEEec-CCCCHHHHHHHHHhhcCC---cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEE
Q 029397 33 QLRYVGGLTRVLSVE-RSISFAELMVKLGEFCGY---SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRA 108 (194)
Q Consensus 33 ~LrYvGGeTRIi~V~-Rsisf~eL~~kLs~l~g~---~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRv 108 (194)
|++|. |++|.+.++ ++++|.+|++++.+.++. .+.|||. +|| ..+|++++|+||+.|++.+.+ ....++++
T Consensus 4 K~~~~-~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~--D~e-~d~v~l~sd~Dl~~a~~~~~~-~~~~~l~l 78 (81)
T cd05992 4 KVKYG-GEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYP--DED-GDLVTISSDEDLEEAIEEARR-SGSKKLRL 78 (81)
T ss_pred EEEec-CCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEee--CCC-CCEEEeCCHHHHHHHHHHHhh-cCCccEEE
Confidence 45555 567777777 999999999999999987 4556665 455 368999999999999999986 23678888
Q ss_pred EEe
Q 029397 109 ILS 111 (194)
Q Consensus 109 FLF 111 (194)
+++
T Consensus 79 ~v~ 81 (81)
T cd05992 79 FVF 81 (81)
T ss_pred EeC
Confidence 874
No 4
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=99.09 E-value=9.2e-10 Score=77.93 Aligned_cols=75 Identities=31% Similarity=0.554 Sum_probs=62.0
Q ss_pred eEeecCceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEE
Q 029397 34 LRYVGGLTRVLSVERSISFAELMVKLGEFCGY---SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAIL 110 (194)
Q Consensus 34 LrYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFL 110 (194)
++|.|+..|++.++++++|.+|+.++++.++. .+.|+|+ +|| ..+|+|++|+||..|++++.+. ...++|||+
T Consensus 6 ~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~--D~d-gD~V~i~sd~Dl~~a~~~~~~~-~~~~lrl~v 81 (84)
T PF00564_consen 6 VRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYK--DED-GDLVTISSDEDLQEAIEQAKES-GSKTLRLFV 81 (84)
T ss_dssp EEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEE--ETT-SSEEEESSHHHHHHHHHHHHHC-TTSCEEEEE
T ss_pred EEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEee--CCC-CCEEEeCCHHHHHHHHHHHHhc-CCCcEEEEE
Confidence 44544444569999999999999999999987 6888887 555 4799999999999999999986 355999998
Q ss_pred eC
Q 029397 111 SP 112 (194)
Q Consensus 111 Fp 112 (194)
..
T Consensus 82 ~~ 83 (84)
T PF00564_consen 82 QD 83 (84)
T ss_dssp EE
T ss_pred Ee
Confidence 63
No 5
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=98.78 E-value=7.1e-08 Score=71.69 Aligned_cols=70 Identities=23% Similarity=0.346 Sum_probs=61.5
Q ss_pred cCceEEEEecCCCCHHHHHHHHHhhcCC----cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEe
Q 029397 38 GGLTRVLSVERSISFAELMVKLGEFCGY----SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILS 111 (194)
Q Consensus 38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~----~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLF 111 (194)
|||++.+.++.+++|.+|+.++++.|+. .+.|||. +|| ...|+++||+||+.=++-|... ...++|+|+-
T Consensus 8 ~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~--Dde-gd~v~ltsd~DL~eai~i~~~~-~~~~v~l~v~ 81 (82)
T cd06407 8 GEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYL--DDD-EEWVLLTCDADLEECIDVYRSS-GSHTIRLLVH 81 (82)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEE--CCC-CCeEEeecHHHHHHHHHHHHHC-CCCeEEEEee
Confidence 8899999999999999999999999874 6999998 444 6799999999999999877654 5899999973
No 6
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=98.35 E-value=2.4e-06 Score=64.94 Aligned_cols=69 Identities=19% Similarity=0.302 Sum_probs=57.7
Q ss_pred cCceEEEEecCCCCHHHHHHHHHhhcCC--cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhC-----CCCceEEEE
Q 029397 38 GGLTRVLSVERSISFAELMVKLGEFCGY--SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAA-----PSSKIRAIL 110 (194)
Q Consensus 38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~--~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~-----~s~rlRvFL 110 (194)
+||+++|.|+.+|+|.+|..|+.+.|+. .++|||+=. ...|++++++||+--|.-..... .-+|+-+.+
T Consensus 10 ~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~~~~~iKykDE----GD~iti~sq~DLd~Ai~~a~~~~~~~~~~~~~~e~w~ 85 (86)
T cd06408 10 QDDTRYIMIGPDTGFADFEDKIRDKFGFKRRLKIKMKDD----GDMITMGDQDDLDMAIDTARSEARKQGSDMGKLEIWV 85 (86)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHHHHhCCCCceEEEEEcC----CCCccccCHHHHHHHHHHHHHHHHhhcccccceeeec
Confidence 7899999999999999999999999987 799999833 57999999999999997665321 246776654
No 7
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=98.31 E-value=8.5e-06 Score=61.82 Aligned_cols=74 Identities=19% Similarity=0.400 Sum_probs=61.2
Q ss_pred eEeecCceEEEEecC-----CCCHHHHHHHHHhhcCC----cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCC
Q 029397 34 LRYVGGLTRVLSVER-----SISFAELMVKLGEFCGY----SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSS 104 (194)
Q Consensus 34 LrYvGGeTRIi~V~R-----sisf~eL~~kLs~l~g~----~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~ 104 (194)
..| ||++|-+.++. +++|.+|..|+++.++. .+.|||. +|| ..+|.++||+||+.-|+...+.++..
T Consensus 5 v~y-~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~--Ded-gd~V~l~~D~DL~~a~~~~~~~~~~~ 80 (91)
T cd06398 5 VKY-GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYT--DED-GDVVTLVDDNDLTDAIQYFCSGSRLN 80 (91)
T ss_pred EEe-CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEE--CCC-CCEEEEccHHHHHHHHHHHhccCCCc
Confidence 344 88899999995 79999999999999865 6889997 444 67999999999999998866666678
Q ss_pred ceEEEEe
Q 029397 105 KIRAILS 111 (194)
Q Consensus 105 rlRvFLF 111 (194)
-||+++-
T Consensus 81 ~lrl~v~ 87 (91)
T cd06398 81 PLRIDVT 87 (91)
T ss_pred eEEEEEE
Confidence 8888774
No 8
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=98.25 E-value=7.5e-06 Score=61.73 Aligned_cols=70 Identities=30% Similarity=0.474 Sum_probs=60.8
Q ss_pred cCceEEEEecCCCCHHHHHHHHHhhcCCcEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEe
Q 029397 38 GGLTRVLSVERSISFAELMVKLGEFCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILS 111 (194)
Q Consensus 38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLF 111 (194)
-||.|||.++|.+.|.||..|+.+.||+.+.+-|-.= .-||-+.|.|||+.-||-.|+...-.-+|+.|.
T Consensus 8 ~gEKRIi~f~RPvkf~dl~~kv~~afGq~mdl~ytn~----eL~iPl~~Q~DLDkAie~ld~s~~~ksLRilL~ 77 (79)
T cd06405 8 NGEKRIIQFPRPVKFKDLQQKVTTAFGQPMDLHYTNN----ELLIPLKNQEDLDRAIELLDRSPHMKSLRILLS 77 (79)
T ss_pred cCceEEEecCCCccHHHHHHHHHHHhCCeeeEEEecc----cEEEeccCHHHHHHHHHHHccCccccceeEeEe
Confidence 4899999999999999999999999999999988732 379999999999999999998544556777764
No 9
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=98.09 E-value=3.4e-05 Score=58.12 Aligned_cols=69 Identities=10% Similarity=0.220 Sum_probs=59.5
Q ss_pred cCceEEEEecC--CCCHHHHHHHHHhhcCC-cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEe
Q 029397 38 GGLTRVLSVER--SISFAELMVKLGEFCGY-SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILS 111 (194)
Q Consensus 38 GGeTRIi~V~R--sisf~eL~~kLs~l~g~-~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLF 111 (194)
|||+..+.++. +++|.+|.+.+++.|+. .+.|||- +|| .--|+++||.||+.-++-|.+- +..||+++.
T Consensus 8 ~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~~f~lKYl--Dde-~e~v~lssd~eLeE~~rl~~~~--~~~l~~~v~ 79 (81)
T cd06396 8 NGESQSFLVSDSENTTWASVEAMVKVSFGLNDIQIKYV--DEE-NEEVSVNSQGEYEEALKSAVRQ--GNLLQMNVY 79 (81)
T ss_pred CCeEEEEEecCCCCCCHHHHHHHHHHHhCCCcceeEEE--cCC-CCEEEEEchhhHHHHHHHHHhC--CCEEEEEEe
Confidence 68888999999 88999999999999987 7889996 555 6789999999999988888873 678888874
No 10
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=98.06 E-value=2.1e-05 Score=59.46 Aligned_cols=66 Identities=23% Similarity=0.372 Sum_probs=52.4
Q ss_pred cCceEEEEecC-CCCHHHHHHHHHhhcCC------cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEE
Q 029397 38 GGLTRVLSVER-SISFAELMVKLGEFCGY------SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAIL 110 (194)
Q Consensus 38 GGeTRIi~V~R-sisf~eL~~kLs~l~g~------~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFL 110 (194)
|||.|.+.++. .++|.||+..+..+++. +|.|||.=+.+| ||+|++++||.--+ .+. ...|+++|+
T Consensus 8 g~DiR~~~~~~~~~t~~~L~~~v~~~F~~~~~~~~~flIKYkD~dGD---lVTIts~~dL~~A~-~~~---~~~~l~~~~ 80 (81)
T cd06401 8 GDDIRRIPIHNEDITYDELLLMMQRVFRGKLGSSDDVLIKYKDEDGD---LITIFDSSDLSFAI-QCS---RILKLTLFV 80 (81)
T ss_pred CCeEEEEeccCccccHHHHHHHHHHHhccccCCcccEEEEEECCCCC---EEEeccHHHHHHHH-hcC---cceEEEEec
Confidence 99999999998 48999999999877752 799999955555 99999999998652 222 256777764
No 11
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=98.05 E-value=4.6e-05 Score=57.92 Aligned_cols=72 Identities=24% Similarity=0.374 Sum_probs=59.5
Q ss_pred ecCceEEEEecCCCCHHHHHHHHHhhcCC----cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEeC
Q 029397 37 VGGLTRVLSVERSISFAELMVKLGEFCGY----SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSP 112 (194)
Q Consensus 37 vGGeTRIi~V~Rsisf~eL~~kLs~l~g~----~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLFp 112 (194)
-+|+-+|..++.+++|.+|..|+.++|.. +|++||-=..+ -+|++++|++|+.-+.-|.... ..-|-+-+||
T Consensus 7 y~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEG---Dp~tiSS~~EL~EA~rl~~~n~-~~~l~ihvfp 82 (83)
T cd06404 7 YNGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDEEG---DPCTISSQMELEEAFRLYELNK-DSELNIHVFP 82 (83)
T ss_pred ecCcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCC---CceeecCHHHHHHHHHHHHhcC-cccEEEEecC
Confidence 47888999999999999999999999965 79999984444 4899999999998888887543 4466677776
No 12
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=97.57 E-value=0.00062 Score=51.80 Aligned_cols=65 Identities=18% Similarity=0.323 Sum_probs=52.0
Q ss_pred ceEEEEecCC--CCHHHHHHHHHhhcC----CcEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEe
Q 029397 40 LTRVLSVERS--ISFAELMVKLGEFCG----YSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILS 111 (194)
Q Consensus 40 eTRIi~V~Rs--isf~eL~~kLs~l~g----~~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLF 111 (194)
|-|-++++.. ++|.+|+.++.++|. ..|+|||.=..+| ||+|+|||||.--+...+ .+-+|+|+-
T Consensus 15 EIRRf~l~~~~~~s~~~L~~~V~~~f~~l~~~~ftlky~DeeGD---lvtIssdeEL~~A~~~~~----~~~~RlyI~ 85 (87)
T cd06402 15 EIRRFAIDEDVSTSYEYLVEKVAAVFPSLRGKNFQLFWKDEEGD---LVAFSSDEELVMALGSLN----DDTFRIYIK 85 (87)
T ss_pred ceEEEEecCCCCcCHHHHHHHHHHHccccCCCcEEEEEECCCCC---EEeecCHHHHHHHHHcCC----CCcEEEEEE
Confidence 5677788555 689999999999984 3899999844444 999999999998877654 377888873
No 13
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=97.43 E-value=0.0007 Score=51.54 Aligned_cols=59 Identities=20% Similarity=0.272 Sum_probs=49.4
Q ss_pred cCceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhh
Q 029397 38 GGLTRVLSVERSISFAELMVKLGEFCGY---SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDR 99 (194)
Q Consensus 38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr 99 (194)
||+||=+.+++.-+|.+|.+||..++.. ++.|+|- +|| .-+|++++|+||++.+....+
T Consensus 8 ~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYi--DeD-~D~ITlssd~eL~d~~~~~~~ 69 (82)
T cd06397 8 LGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYI--DND-NDEITLSSNKELQDFYRLSHR 69 (82)
T ss_pred CCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEE--cCC-CCEEEecchHHHHHHHHhccc
Confidence 5677777899999999999999999976 5889996 444 369999999999987765554
No 14
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=97.20 E-value=0.0036 Score=47.54 Aligned_cols=67 Identities=19% Similarity=0.361 Sum_probs=55.7
Q ss_pred eecCceEEEEecCC--CCHHHHHHHHHhhc---CCcEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEE
Q 029397 36 YVGGLTRVLSVERS--ISFAELMVKLGEFC---GYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAIL 110 (194)
Q Consensus 36 YvGGeTRIi~V~Rs--isf~eL~~kLs~l~---g~~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFL 110 (194)
+-|+|.|=.+++|+ .+|.||.+.|..+. +.++.|+|.=|++| |+.|+|||.+..-+.- ...-+|+|+
T Consensus 6 kfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l~~~~f~i~Y~D~~gD---LLPInNDdNf~kAlss-----a~plLRl~i 77 (80)
T cd06403 6 KFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHIPNVDFLIGYTDPHGD---LLPINNDDNFLKALSS-----ANPLLRIFI 77 (80)
T ss_pred ccCCeEEEEEeccccCcCHHHHHHHHHHHhCCCCCcEEEEEeCCCCC---EecccCcHHHHHHHHc-----CCCceEEEE
Confidence 56899999999998 89999999888876 44899999999776 8999999998876651 256788886
No 15
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=96.92 E-value=0.0034 Score=47.41 Aligned_cols=60 Identities=18% Similarity=0.306 Sum_probs=47.7
Q ss_pred CeEeecCceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEeecCCCCCCcEEeecChhHHHHHHHHH
Q 029397 33 QLRYVGGLTRVLSVERSISFAELMVKLGEFCGY---SVTLRCQLPNGDLETLISIKSDDDLANLIEEY 97 (194)
Q Consensus 33 ~LrYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKYQLP~edLDaLISVssDeDL~nM~eEY 97 (194)
|++|-+ |-+|.|+++++|++|..|+++-.+. .+.|.|.=... ..++.+ +|+||+.++.--
T Consensus 6 KV~f~~--tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~s--~~~v~l-~d~dle~aws~~ 68 (80)
T cd06406 6 KVHFKY--TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEAS--GEDVIL-SDTNMEDVWSQA 68 (80)
T ss_pred EEEEEE--EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCCC--CCccCc-ChHHHHHHHHhh
Confidence 467776 9999999999999999999997654 57788884433 356777 899999988643
No 16
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w
Probab=96.46 E-value=0.015 Score=45.26 Aligned_cols=60 Identities=22% Similarity=0.288 Sum_probs=52.3
Q ss_pred cCceEEEEecCCC----CHHHHHHHHHhhcCC-cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhh
Q 029397 38 GGLTRVLSVERSI----SFAELMVKLGEFCGY-SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRA 100 (194)
Q Consensus 38 GGeTRIi~V~Rsi----sf~eL~~kLs~l~g~-~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~ 100 (194)
|-++|=|.|..++ +|.||...+..-++. ++.|.|+=+.+| ||-+-+|||+.-||+|-..+
T Consensus 12 ~~~~rdi~vee~l~~~P~~kdLl~lmr~~f~~~dIaLNYrD~EGD---LIRllddeDv~LMV~~~r~~ 76 (92)
T cd06399 12 ISTIRDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGD---LIRLLSDEDVALMVRQSRGL 76 (92)
T ss_pred CccccceEeecccccCccHHHHHHHHHHHhchhheeeeeecCCCC---EEEEcchhhHHHHHHHHhcC
Confidence 5577889998887 589999999998876 899999988877 89999999999999998655
No 17
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=96.40 E-value=0.036 Score=42.19 Aligned_cols=70 Identities=21% Similarity=0.219 Sum_probs=56.0
Q ss_pred cCceEEEEecCCCCHHHHHHHHHhhcCCc------EEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEe
Q 029397 38 GGLTRVLSVERSISFAELMVKLGEFCGYS------VTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILS 111 (194)
Q Consensus 38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~~------v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLF 111 (194)
.|.++=+.+..+.++.+|+..+++-+|.+ +.|||- ++| .-.|++|||.||..-|+-+... ..-++|+||-
T Consensus 9 ~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Yl--DDE-gD~VllT~D~DL~e~v~iar~~-g~~~v~L~v~ 84 (86)
T cd06409 9 KGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYV--DDE-GDIVLITSDSDLVAAVLVARSA-GLKKLDLHLH 84 (86)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEE--cCC-CCEEEEeccchHHHHHHHHHHc-CCCEEEEEEe
Confidence 57788888888999999999999988653 568885 222 4689999999999999877654 4678998874
No 18
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=95.60 E-value=0.056 Score=40.78 Aligned_cols=55 Identities=18% Similarity=0.239 Sum_probs=47.3
Q ss_pred eEEEEecCCCCHHHHHHHHHhhcCC---cEEEEeecCCCCCCcEEeecChhHHHHHHHH
Q 029397 41 TRVLSVERSISFAELMVKLGEFCGY---SVTLRCQLPNGDLETLISIKSDDDLANLIEE 96 (194)
Q Consensus 41 TRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKYQLP~edLDaLISVssDeDL~nM~eE 96 (194)
|-+|.|++..++++|+.+|++.... ...|-|.-|+++ ..||-++.+||++.++.-
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~~~~~-~~~v~l~~e~~me~aW~~ 65 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRAPGED-GHWVPISGEESLQRAWQD 65 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecCCCCC-ccEeecCcchHHHHHHHh
Confidence 7789999999999999999997765 578999988875 478999989999888753
No 19
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=91.79 E-value=0.43 Score=37.02 Aligned_cols=50 Identities=14% Similarity=0.379 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHhhcCCc--EEEEeecCCCCCCcEEeecChhHHHHHHHHHhhh
Q 029397 48 RSISFAELMVKLGEFCGYS--VTLRCQLPNGDLETLISIKSDDDLANLIEEYDRA 100 (194)
Q Consensus 48 Rsisf~eL~~kLs~l~g~~--v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~ 100 (194)
..++|.|+..-++....-. -.|.|. +|| ..=|+|.+||+++.||..|..+
T Consensus 21 ~~L~F~DvL~~I~~vlp~aT~tAFeYE--DE~-gDRITVRSDeEm~AMlsyy~~~ 72 (91)
T cd06395 21 PQLLFRDVLDVIGQVLPEATTTAFEYE--DED-GDRITVRSDEEMKAMLSYYCST 72 (91)
T ss_pred ccccHHHHHHHHHHhcccccccceeec--ccc-CCeeEecchHHHHHHHHHHHHH
Confidence 5689999999999988652 347775 666 4469999999999999988654
No 20
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=87.64 E-value=6.5 Score=38.18 Aligned_cols=84 Identities=17% Similarity=0.247 Sum_probs=63.1
Q ss_pred eecCceEEEEecCCCCHHHHHHHHHhhcCC----cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEe
Q 029397 36 YVGGLTRVLSVERSISFAELMVKLGEFCGY----SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILS 111 (194)
Q Consensus 36 YvGGeTRIi~V~Rsisf~eL~~kLs~l~g~----~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLF 111 (194)
|-+|+--|..++..++|.+|...+..+|.. .+++|+- +|| ..=++|++.-+|+.-+.-|. .+..+-|-+-+|
T Consensus 21 ~y~g~i~i~~~~p~~~~e~~~~~vrd~c~~h~~q~~t~kwi--dee-gdp~tv~sqmeleea~r~~~-~~~d~el~ihvf 96 (593)
T KOG0695|consen 21 HYGGDIFITSVDPATTFEELCEEVRDMCRLHQQQPLTLKWI--DEE-GDPCTVSSQMELEEAFRLAR-QCRDEELIIHVF 96 (593)
T ss_pred eecCcEEEEeccCcccHHHHHHHHHHHHHHhhcCCceeEee--cCC-CCcceechhhhHHHHHHHHH-hccccceEEEEc
Confidence 334455588999999999999999999964 7889985 555 34689999988877665554 344678889999
Q ss_pred CCCCCCCcCCCC
Q 029397 112 PPASLKKVSPPA 123 (194)
Q Consensus 112 p~~~~~~~s~~~ 123 (194)
|.++...--|-+
T Consensus 97 ~~~pe~pglpc~ 108 (593)
T KOG0695|consen 97 PSTPEQPGLPCP 108 (593)
T ss_pred cCCCCCCCCCCC
Confidence 988877544433
No 21
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=84.83 E-value=3.1 Score=28.17 Aligned_cols=38 Identities=24% Similarity=0.370 Sum_probs=31.5
Q ss_pred eEeecCceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEee
Q 029397 34 LRYVGGLTRVLSVERSISFAELMVKLGEFCGYS---VTLRCQ 72 (194)
Q Consensus 34 LrYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKYQ 72 (194)
+++ +|++.-+.|+.+.+..+|+.++++..|.+ ..|.|.
T Consensus 5 vk~-~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 45 (71)
T cd01812 5 VKH-GGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFK 45 (71)
T ss_pred EEE-CCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeC
Confidence 456 48888899999999999999999998873 566665
No 22
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=83.87 E-value=3.5 Score=29.84 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=25.3
Q ss_pred EEecCCCCHHHHHHHHHhhcCC---cEEEEee
Q 029397 44 LSVERSISFAELMVKLGEFCGY---SVTLRCQ 72 (194)
Q Consensus 44 i~V~Rsisf~eL~~kLs~l~g~---~v~lKYQ 72 (194)
+.++.+++..||+.||..++|. .+.|.|.
T Consensus 18 kr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~ 49 (87)
T PF14560_consen 18 KRFPKSITVSELKQKLEKLTGIPPSDMRLQLK 49 (87)
T ss_dssp EEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCcccEEEEEE
Confidence 6799999999999999999998 4677664
No 23
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=79.39 E-value=6.4 Score=26.79 Aligned_cols=38 Identities=24% Similarity=0.241 Sum_probs=31.5
Q ss_pred eEeecCceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEe
Q 029397 34 LRYVGGLTRVLSVERSISFAELMVKLGEFCGYS---VTLRC 71 (194)
Q Consensus 34 LrYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKY 71 (194)
++..+|++..+.|+.+.+..+|+.++++..|.+ ..|.|
T Consensus 5 v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~ 45 (76)
T cd01803 5 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (76)
T ss_pred EEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEE
Confidence 345678899999999999999999999998873 45655
No 24
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=78.39 E-value=7.3 Score=27.19 Aligned_cols=65 Identities=20% Similarity=0.323 Sum_probs=44.0
Q ss_pred eEeecCceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEE
Q 029397 34 LRYVGGLTRVLSVERSISFAELMVKLGEFCGY---SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAIL 110 (194)
Q Consensus 34 LrYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFL 110 (194)
.+..+|++..+.|+.+.+..+|++++++..|. ...|-|. |..|+ |+ ..+++|. +.+...|.+.+
T Consensus 5 vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~--G~~L~-------d~---~~L~~~~-i~~~~~l~l~~ 71 (74)
T cd01807 5 VKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFK--GKALA-------DD---KRLSDYS-IGPNAKLNLVV 71 (74)
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEEC--CEECC-------CC---CCHHHCC-CCCCCEEEEEE
Confidence 46678999999999999999999999998876 3455554 33322 22 3456665 22345555554
Q ss_pred e
Q 029397 111 S 111 (194)
Q Consensus 111 F 111 (194)
=
T Consensus 72 ~ 72 (74)
T cd01807 72 R 72 (74)
T ss_pred c
Confidence 3
No 25
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=78.02 E-value=6 Score=27.78 Aligned_cols=35 Identities=14% Similarity=0.113 Sum_probs=30.5
Q ss_pred cCceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEee
Q 029397 38 GGLTRVLSVERSISFAELMVKLGEFCGY---SVTLRCQ 72 (194)
Q Consensus 38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKYQ 72 (194)
+|++..|.|+.+.+..+|+.++++..|. ...|-|.
T Consensus 8 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~ 45 (71)
T cd01796 8 SETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYN 45 (71)
T ss_pred CCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 8999999999999999999999999886 3456554
No 26
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=77.79 E-value=4.5 Score=28.69 Aligned_cols=33 Identities=24% Similarity=0.224 Sum_probs=30.2
Q ss_pred CeEeecCceEEEEecCCCCHHHHHHHHHhhcCC
Q 029397 33 QLRYVGGLTRVLSVERSISFAELMVKLGEFCGY 65 (194)
Q Consensus 33 ~LrYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~ 65 (194)
+++..+|++..+.|+.+.+..+|++++++..|.
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi 34 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGV 34 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCC
Confidence 467789999999999999999999999998876
No 27
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=77.69 E-value=11 Score=22.02 Aligned_cols=39 Identities=26% Similarity=0.197 Sum_probs=31.0
Q ss_pred EeecCceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEeec
Q 029397 35 RYVGGLTRVLSVERSISFAELMVKLGEFCGY---SVTLRCQL 73 (194)
Q Consensus 35 rYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKYQL 73 (194)
++.+|.+..+.++.+.++.+|+.++.+..|. .+.|-+..
T Consensus 3 ~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~ 44 (69)
T cd00196 3 KLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNG 44 (69)
T ss_pred EecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECC
Confidence 3448999999999999999999999998764 35555543
No 28
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=76.19 E-value=10 Score=25.55 Aligned_cols=38 Identities=24% Similarity=0.326 Sum_probs=31.8
Q ss_pred eEeecCceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEe
Q 029397 34 LRYVGGLTRVLSVERSISFAELMVKLGEFCGY---SVTLRC 71 (194)
Q Consensus 34 LrYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKY 71 (194)
.+...|++..+.|+.+.+..+|+.++++..|. ...|-|
T Consensus 5 vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~ 45 (72)
T cd01809 5 VKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIY 45 (72)
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 35567888999999999999999999998876 356666
No 29
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=75.99 E-value=9.9 Score=25.85 Aligned_cols=42 Identities=12% Similarity=0.148 Sum_probs=32.3
Q ss_pred EeecCceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEeecCCCCC
Q 029397 35 RYVGGLTRVLSVERSISFAELMVKLGEFCGYS---VTLRCQLPNGDL 78 (194)
Q Consensus 35 rYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKYQLP~edL 78 (194)
+-.+|++..+.|+.+.+..+|+.++++..|.+ ..|-|. |..|
T Consensus 6 ~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~--g~~L 50 (76)
T cd01806 6 KTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS--GKQM 50 (76)
T ss_pred EeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEEC--CeEc
Confidence 33568888899999999999999999988773 455554 5544
No 30
>PTZ00044 ubiquitin; Provisional
Probab=73.49 E-value=12 Score=25.88 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=31.9
Q ss_pred EeecCceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEee
Q 029397 35 RYVGGLTRVLSVERSISFAELMVKLGEFCGY---SVTLRCQ 72 (194)
Q Consensus 35 rYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKYQ 72 (194)
+-..|++..+.|+.+.+-.+|++++++..|. ...|-|.
T Consensus 6 k~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 46 (76)
T PTZ00044 6 KTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYS 46 (76)
T ss_pred EeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 4567999999999999999999999999987 3456564
No 31
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=71.72 E-value=9.2 Score=27.62 Aligned_cols=35 Identities=20% Similarity=0.120 Sum_probs=30.1
Q ss_pred ecCceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEee
Q 029397 37 VGGLTRVLSVERSISFAELMVKLGEFCGYS---VTLRCQ 72 (194)
Q Consensus 37 vGGeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKYQ 72 (194)
.+|.|..|.|+.+.+..+|+.|+.+..|.+ ..| |.
T Consensus 10 ~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~ 47 (75)
T cd01799 10 SHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VI 47 (75)
T ss_pred cCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-Ec
Confidence 368899999999999999999999999874 456 54
No 32
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=71.53 E-value=11 Score=26.08 Aligned_cols=32 Identities=25% Similarity=0.208 Sum_probs=29.0
Q ss_pred eEeecCceEEEEecCCCCHHHHHHHHHhhcCC
Q 029397 34 LRYVGGLTRVLSVERSISFAELMVKLGEFCGY 65 (194)
Q Consensus 34 LrYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~ 65 (194)
++..+|++..+.|+.+.+..+|++++++..|.
T Consensus 5 vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i 36 (77)
T cd01805 5 FKTLKQQTFPIEVDPDDTVAELKEKIEEEKGC 36 (77)
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHhhCC
Confidence 46788999999999999999999999998875
No 33
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=68.25 E-value=14 Score=26.16 Aligned_cols=63 Identities=22% Similarity=0.235 Sum_probs=44.6
Q ss_pred ecCceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEeC
Q 029397 37 VGGLTRVLSVERSISFAELMVKLGEFCGYS---VTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSP 112 (194)
Q Consensus 37 vGGeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLFp 112 (194)
.+|++..|.|+.+.+..+|+.+|.+..|.+ ..|.|. |. +-.|+ ..+++|. +.....|.+.+-.
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~--G~-------~L~d~---~tL~~~~-i~~g~~l~v~~~~ 70 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYE--GI-------FIKDS---NSLAYYN-LANGTIIHLQLKE 70 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC--CE-------EcCCC---CcHHHcC-CCCCCEEEEEEec
Confidence 478999999999999999999999998873 456664 22 22232 3567776 4345667666543
No 34
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=67.72 E-value=16 Score=25.51 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=31.9
Q ss_pred eEeecCceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEee
Q 029397 34 LRYVGGLTRVLSVERSISFAELMVKLGEFCGYS---VTLRCQ 72 (194)
Q Consensus 34 LrYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKYQ 72 (194)
.+...|++..+.|+.+.+..+|++++++..|.+ ..|-|.
T Consensus 3 vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~ 44 (74)
T cd01810 3 VRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFE 44 (74)
T ss_pred EECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 356789999999999999999999999988763 445453
No 35
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=67.07 E-value=6.5 Score=35.13 Aligned_cols=61 Identities=21% Similarity=0.348 Sum_probs=45.5
Q ss_pred ecCCCCHHHHHHHHHhhcCCcE-EEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEeC
Q 029397 46 VERSISFAELMVKLGEFCGYSV-TLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSP 112 (194)
Q Consensus 46 V~Rsisf~eL~~kLs~l~g~~v-~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLFp 112 (194)
.++++++++|+.||.-++|..+ +.+-||=+.| |.+++.-+|||-. +-.|- ..--+||-+.-
T Consensus 19 ~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~-d~~~~~lsn~d~~--lg~~~---~~Dg~rihviD 80 (234)
T KOG3206|consen 19 LSNSLTLAQFKDKLELLTGTEAESMELELYDGD-DKKVSALSNEDAD--LGFYK---VEDGLRIHVID 80 (234)
T ss_pred cCCcCcHHHHHhhhhhhhCCCccceEEEEEcCC-CceeeeccCCccc--ccccC---CCCceEEEEEe
Confidence 4688999999999999999865 5888888888 9999999988742 22222 23445666554
No 36
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=66.32 E-value=19 Score=24.73 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=31.8
Q ss_pred EeecCceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEee
Q 029397 35 RYVGGLTRVLSVERSISFAELMVKLGEFCGY---SVTLRCQ 72 (194)
Q Consensus 35 rYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKYQ 72 (194)
+-.+|++..+.|+.+.+..+|+.++++..|. ...|-|.
T Consensus 4 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~ 44 (70)
T cd01798 4 RTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFA 44 (70)
T ss_pred EcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 5568999999999999999999999999876 3455554
No 37
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=61.71 E-value=28 Score=22.67 Aligned_cols=37 Identities=27% Similarity=0.205 Sum_probs=29.1
Q ss_pred EeecCceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEe
Q 029397 35 RYVGGLTRVLSVERSISFAELMVKLGEFCGY---SVTLRC 71 (194)
Q Consensus 35 rYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKY 71 (194)
+..+|.+..+.++.+.+..+|+.++++.+|. .+.|.|
T Consensus 3 ~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~ 42 (69)
T cd01769 3 KTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIY 42 (69)
T ss_pred EccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 3446777788999999999999999999886 345555
No 38
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=61.11 E-value=21 Score=22.98 Aligned_cols=37 Identities=27% Similarity=0.276 Sum_probs=28.5
Q ss_pred EeecCceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEee
Q 029397 35 RYVGGLTRVLSVERSISFAELMVKLGEFCGYS---VTLRCQ 72 (194)
Q Consensus 35 rYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKYQ 72 (194)
+..+ .+.-+.|+.+.+..+|+.++++.+|.+ ..|.|.
T Consensus 6 k~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~ 45 (64)
T smart00213 6 KTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYK 45 (64)
T ss_pred EECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 3445 477899999999999999999998873 345443
No 39
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=60.92 E-value=9.2 Score=26.14 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=31.6
Q ss_pred eEeecCceEEEEecCCCCHHHHHHHHHhhcCC----cEEEEee
Q 029397 34 LRYVGGLTRVLSVERSISFAELMVKLGEFCGY----SVTLRCQ 72 (194)
Q Consensus 34 LrYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~----~v~lKYQ 72 (194)
|+-.+|+.--+.|.++.+|..|+.+.++..|. .+.|.|.
T Consensus 5 v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fd 47 (72)
T PF11976_consen 5 VRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFD 47 (72)
T ss_dssp EEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEET
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEEC
Confidence 45567888889999999999999999998765 3556664
No 40
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=59.31 E-value=18 Score=26.37 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=23.0
Q ss_pred EEecCCCCHHHHHHHHHhhcCCc---EEEEe
Q 029397 44 LSVERSISFAELMVKLGEFCGYS---VTLRC 71 (194)
Q Consensus 44 i~V~Rsisf~eL~~kLs~l~g~~---v~lKY 71 (194)
..++.+++..+|+.||..++|.+ +.|-|
T Consensus 17 kr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l 47 (84)
T cd01789 17 KKYSRGLTIAELKKKLELVVGTPASSMRLQL 47 (84)
T ss_pred EecCCCCcHHHHHHHHHHHHCCCccceEEEE
Confidence 45899999999999999999983 45543
No 41
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=59.12 E-value=9 Score=31.98 Aligned_cols=62 Identities=21% Similarity=0.283 Sum_probs=44.1
Q ss_pred CceEEEEecCCCCHHHHHHHHHhhcCCcEEEEeecCCCCC-CcEEeecChhHHHHHHHHHhhhC
Q 029397 39 GLTRVLSVERSISFAELMVKLGEFCGYSVTLRCQLPNGDL-ETLISIKSDDDLANLIEEYDRAA 101 (194)
Q Consensus 39 GeTRIi~V~Rsisf~eL~~kLs~l~g~~v~lKYQLP~edL-DaLISVssDeDL~nM~eEYdr~~ 101 (194)
|.+..+.-+..+++.|+...+++..|.++...+ +|.|++ +.|..---.+|+.+|+.++.+..
T Consensus 189 ~~~~~l~g~~~~s~~eia~~l~~~~g~~v~~~~-~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 251 (285)
T TIGR03649 189 NTDYVVLGPELLTYDDVAEILSRVLGRKITHVK-LTEEELAQRLQSFGMPEDLARMLASLDTAV 251 (285)
T ss_pred CCeEEeeCCccCCHHHHHHHHHHHhCCceEEEe-CCHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 455667778899999999999999998764433 565554 33433345688888888877653
No 42
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=53.81 E-value=38 Score=25.91 Aligned_cols=39 Identities=15% Similarity=0.125 Sum_probs=32.7
Q ss_pred eEeecCceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEee
Q 029397 34 LRYVGGLTRVLSVERSISFAELMVKLGEFCGYS---VTLRCQ 72 (194)
Q Consensus 34 LrYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKYQ 72 (194)
++-.+|++..|.|+.+.+-.+|+.++++..|.+ ..|-|.
T Consensus 32 Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~ 73 (103)
T cd01802 32 IETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWN 73 (103)
T ss_pred EEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEEC
Confidence 466789999999999999999999999988763 456664
No 43
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=52.91 E-value=2e+02 Score=27.04 Aligned_cols=69 Identities=22% Similarity=0.283 Sum_probs=45.3
Q ss_pred eEeecCceEEEEecCCCCHHHHHHHHHhhcC---Cc---EEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceE
Q 029397 34 LRYVGGLTRVLSVERSISFAELMVKLGEFCG---YS---VTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIR 107 (194)
Q Consensus 34 LrYvGGeTRIi~V~Rsisf~eL~~kLs~l~g---~~---v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlR 107 (194)
++-..|++..|.|+.+.+..+|+.+|.+..| .+ ..|-|. |. |-.|+ ..+++|.- .....|-
T Consensus 5 VKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~--Gk-------iL~Dd---~tL~dy~I-~e~~~Iv 71 (378)
T TIGR00601 5 FKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYS--GK-------ILSDD---KTVREYKI-KEKDFVV 71 (378)
T ss_pred EEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEEC--CE-------ECCCC---CcHHHcCC-CCCCEEE
Confidence 4566789999999999999999999999887 42 445554 33 22333 24677752 2234455
Q ss_pred EEEeCCCC
Q 029397 108 AILSPPAS 115 (194)
Q Consensus 108 vFLFp~~~ 115 (194)
+.|-..|.
T Consensus 72 vmv~k~k~ 79 (378)
T TIGR00601 72 VMVSKPKT 79 (378)
T ss_pred EEeccCCC
Confidence 55554444
No 44
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=50.09 E-value=56 Score=22.71 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=29.2
Q ss_pred cCceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEee
Q 029397 38 GGLTRVLSVERSISFAELMVKLGEFCGY---SVTLRCQ 72 (194)
Q Consensus 38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKYQ 72 (194)
+++++.+.|+.+.+-.+|+.++++..|. ...|-|.
T Consensus 7 ~~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~ 44 (74)
T cd01793 7 AQNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLA 44 (74)
T ss_pred CCCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEEC
Confidence 4678999999999999999999998876 3456664
No 45
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=49.77 E-value=51 Score=23.47 Aligned_cols=41 Identities=15% Similarity=0.017 Sum_probs=30.2
Q ss_pred ecCceEEEEecCCCCHHHHHHHHHhhcCCcE-EEEeecCCCC
Q 029397 37 VGGLTRVLSVERSISFAELMVKLGEFCGYSV-TLRCQLPNGD 77 (194)
Q Consensus 37 vGGeTRIi~V~Rsisf~eL~~kLs~l~g~~v-~lKYQLP~ed 77 (194)
..|.+.-|.|+.+.+..||+.++++..|.+. .+|.-..|.-
T Consensus 9 ~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~ 50 (78)
T cd01804 9 TTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETR 50 (78)
T ss_pred CCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcC
Confidence 3577788999999999999999999877632 2333333543
No 46
>KOG2094 consensus Predicted DNA damage inducible protein [Replication, recombination and repair]
Probab=48.13 E-value=59 Score=31.71 Aligned_cols=83 Identities=28% Similarity=0.385 Sum_probs=52.2
Q ss_pred eCCEeeeCCCCCCeEeecCceEEEEecCCCC----HHHHHHHHHhhc-------------CCcEEEEeecCCCCCCc---
Q 029397 21 YGGKILPRSMDGQLRYVGGLTRVLSVERSIS----FAELMVKLGEFC-------------GYSVTLRCQLPNGDLET--- 80 (194)
Q Consensus 21 yGG~I~PRp~Dg~LrYvGGeTRIi~V~Rsis----f~eL~~kLs~l~-------------g~~v~lKYQLP~edLDa--- 80 (194)
+||.++++ | |+.+-|++.|..+ ++.|-.|+.++| |.+++|||.+-.=|.-+
T Consensus 335 ~g~t~~~~--~-------~eRKsis~ErTFs~~sd~~il~~k~qel~~~lsedlqK~glv~rtvtiKlK~ssFev~Tr~~ 405 (490)
T KOG2094|consen 335 LGTTILDE--D-------GERKSISSERTFSSTSDPSILYSKLQELCQMLSEDLQKEGLVGRTVTIKLKTSSFEVHTRQK 405 (490)
T ss_pred CCCCcCcc--c-------cccccccceeeecccCCHHHHHHHHHHHHHHHHHHHHhcCcccceEEEEEeccceeeeeccC
Confidence 45788874 4 4466777777653 555555555544 55899999987644221
Q ss_pred -EE-eecChhHHHHHHHHHhhhCCCCceEEEEeC
Q 029397 81 -LI-SIKSDDDLANLIEEYDRAAPSSKIRAILSP 112 (194)
Q Consensus 81 -LI-SVssDeDL~nM~eEYdr~~~s~rlRvFLFp 112 (194)
.= =|.+.||+..---|.-+..-+.+||+.=.-
T Consensus 406 t~s~vv~S~edi~k~aleLLk~e~~~~iRLlGvR 439 (490)
T KOG2094|consen 406 TISQVVHSEEDILKPALELLKQEYPMTIRLLGVR 439 (490)
T ss_pred chhhhhccHHHHHHHHHHHHHhhcCceEeeeeee
Confidence 11 156788887776666665557788876443
No 47
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=47.56 E-value=38 Score=25.32 Aligned_cols=41 Identities=27% Similarity=0.413 Sum_probs=29.2
Q ss_pred eeCCEeeeC--CCCCCeEeecCceEEEEecCC----CCHHHHHHHHHhhcC
Q 029397 20 SYGGKILPR--SMDGQLRYVGGLTRVLSVERS----ISFAELMVKLGEFCG 64 (194)
Q Consensus 20 SyGG~I~PR--p~Dg~LrYvGGeTRIi~V~Rs----isf~eL~~kLs~l~g 64 (194)
-||=.|.-. ..||++.|+ -.-.|+++ +.|.-|+.||.++|.
T Consensus 23 ~fGl~i~rgd~sTDGkWCyi----v~wVv~~~~~~~~rW~lLK~RL~~~CP 69 (69)
T cd04894 23 EFGLNITRGDDSTDGRWCYI----VFWVVPRPPSIKVRWDLLKNRLMSACP 69 (69)
T ss_pred HhceEEEecccccCCcEEEE----EEEEecCCCCCcccHHHHHHHHHhcCC
Confidence 456555532 469999997 33445565 789999999999873
No 48
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=44.51 E-value=61 Score=21.67 Aligned_cols=35 Identities=29% Similarity=0.300 Sum_probs=29.4
Q ss_pred ecCceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEe
Q 029397 37 VGGLTRVLSVERSISFAELMVKLGEFCGYS---VTLRC 71 (194)
Q Consensus 37 vGGeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKY 71 (194)
..|.+.-+.|+.+.+..+|+.++++..|.+ ..|-|
T Consensus 3 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~ 40 (69)
T PF00240_consen 3 LSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIY 40 (69)
T ss_dssp TTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEE
T ss_pred CCCcEEEEEECCCCCHHHhhhhcccccccccccceeee
Confidence 468899999999999999999999998873 44555
No 49
>KOG0672 consensus Halotolerance protein HAL3 (contains flavoprotein domain) [Inorganic ion transport and metabolism; Cell cycle control, cell division, chromosome partitioning]
Probab=43.57 E-value=68 Score=28.58 Aligned_cols=66 Identities=23% Similarity=0.343 Sum_probs=48.3
Q ss_pred CCCCCeEeecCceEEEEecCCCCHHHHHHHHHhhcCCc-EEEEe--------ecCCCCCCcEEeecChhHHHHHHHHH
Q 029397 29 SMDGQLRYVGGLTRVLSVERSISFAELMVKLGEFCGYS-VTLRC--------QLPNGDLETLISIKSDDDLANLIEEY 97 (194)
Q Consensus 29 p~Dg~LrYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~~-v~lKY--------QLP~edLDaLISVssDeDL~nM~eEY 97 (194)
..|||+.-.=|-|==|+| |++..|++||.+..|.+ ++|+- ++-.++|...|.+-+|+|.+.|+.+-
T Consensus 16 ~~d~K~hvL~gaTGSvA~---iK~~~li~kL~ei~G~dki~iqvvvT~~a~~f~~~~~l~~~v~~~~d~DeW~~W~~r 90 (218)
T KOG0672|consen 16 QDDGKFHVLLGATGSVAV---IKLPLLIKKLEEIYGRDKISIQVVVTKSATHFLEKLKLNKHVQLYTDEDEWKMWKSR 90 (218)
T ss_pred CCCCceeEEEEeccccce---eehHHHHHHHHHhcCCcceeEEEEEechHHHHHhhcccccceeeecChHHhhhhhhc
Confidence 367777655444444443 78999999999999962 33332 24468899999999999999998764
No 50
>PF03902 Gal4_dimer: Gal4-like dimerisation domain; InterPro: IPR005600 The DNA binding domain (residues 1 to 147) of the yeast transcriptional activator GAL4 exists in solution in dimeric form, with the region responsible for dimerisation somewhere between residues 74 and 147. Experimental studies confirmed that the 'hydrophobic region' of the protein (residues 54-97, which contains a larger proportion of alpha-helix), is essential for dimerisation []. ; PDB: 1HBW_B 1D66_A 3COQ_A.
Probab=43.30 E-value=2.9 Score=30.16 Aligned_cols=31 Identities=23% Similarity=0.440 Sum_probs=25.6
Q ss_pred EEeecCCCCCCcEEeecChhHHHHHHHHHhh
Q 029397 69 LRCQLPNGDLETLISIKSDDDLANLIEEYDR 99 (194)
Q Consensus 69 lKYQLP~edLDaLISVssDeDL~nM~eEYdr 99 (194)
|++-+|++|+|.|+--.++.||..|.+....
T Consensus 19 l~~lfP~~did~lL~~~~~~~l~~il~~l~~ 49 (57)
T PF03902_consen 19 LRELFPGEDIDDLLNDRDASDLKPILKKLFP 49 (57)
T ss_dssp HCCCSSSSHHHHHHHHHSCHHHHHHHHHH--
T ss_pred HHHHCCCcCHHHHHHcccHHHHHHHHHHhcc
Confidence 5677899999999999999999999886654
No 51
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=42.84 E-value=41 Score=24.01 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=26.1
Q ss_pred cCceEEEEecCCCCHHHHHHHHHhhcCCc
Q 029397 38 GGLTRVLSVERSISFAELMVKLGEFCGYS 66 (194)
Q Consensus 38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~~ 66 (194)
+|++.-|.|+.+.+..+|+++|.+..|.+
T Consensus 8 ~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp 36 (74)
T cd01813 8 GGQEYSVTTLSEDTVLDLKQFIKTLTGVL 36 (74)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCC
Confidence 67788899999999999999999998873
No 52
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=41.57 E-value=69 Score=23.26 Aligned_cols=39 Identities=21% Similarity=0.246 Sum_probs=32.1
Q ss_pred eEeecCceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEee
Q 029397 34 LRYVGGLTRVLSVERSISFAELMVKLGEFCGY---SVTLRCQ 72 (194)
Q Consensus 34 LrYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKYQ 72 (194)
++..-|.+..+.|.++.++..|+.+.++..|. .+.|-|.
T Consensus 16 v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~ 57 (87)
T cd01763 16 VKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFD 57 (87)
T ss_pred EECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEEC
Confidence 45556888889999999999999999998876 4566665
No 53
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=40.53 E-value=36 Score=22.42 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=35.3
Q ss_pred EecCCCCHHHHHHHHHhhcCCcEEEEeecCCC-----CCCcEEeecChhHHHHHHHHHh
Q 029397 45 SVERSISFAELMVKLGEFCGYSVTLRCQLPNG-----DLETLISIKSDDDLANLIEEYD 98 (194)
Q Consensus 45 ~V~Rsisf~eL~~kLs~l~g~~v~lKYQLP~e-----dLDaLISVssDeDL~nM~eEYd 98 (194)
.+|.+++-.+|+.-+... | .+ .++.+..+ --.++|...+-||..+.++.++
T Consensus 5 nlp~~~~~~~l~~~f~~~-g-~v-~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~ 60 (70)
T PF14259_consen 5 NLPPSTTEEDLRNFFSRF-G-PV-EKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLN 60 (70)
T ss_dssp SSTTT--HHHHHHHCTTS-S-BE-EEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHhc-C-Cc-ceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCC
Confidence 367888888888766665 4 22 23333333 1479999999999999999987
No 54
>PRK10667 Hha toxicity attenuator; Provisional
Probab=39.97 E-value=24 Score=28.93 Aligned_cols=37 Identities=24% Similarity=0.541 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHhhcCCcEEEEeecCCCCCCcEEeecChhHHHHHHHHHh
Q 029397 48 RSISFAELMVKLGEFCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYD 98 (194)
Q Consensus 48 Rsisf~eL~~kLs~l~g~~v~lKYQLP~edLDaLISVssDeDL~nM~eEYd 98 (194)
.++.+.||+..++.+. ..+.||| |. +.||..+||||-
T Consensus 44 ~nlqLNeLIEHIa~f~-~~fKIKY--p~-----------~~~l~~~ideYL 80 (122)
T PRK10667 44 VNLQLNELIEHIATFA-LNFKIKY--PE-----------DSKLIEQIDEYL 80 (122)
T ss_pred hhhhHHHHHHHHHHHH-HHhhccC--Cc-----------HhhHHHHHHHHH
Confidence 4567899999999876 4677888 44 468899999984
No 55
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=35.06 E-value=1.2e+02 Score=22.94 Aligned_cols=47 Identities=23% Similarity=0.296 Sum_probs=33.4
Q ss_pred HHHHHHHhhc---CCcEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEE
Q 029397 54 ELMVKLGEFC---GYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAIL 110 (194)
Q Consensus 54 eL~~kLs~l~---g~~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFL 110 (194)
++++.|.+++ ..+|+|+.++-+. ..-++++.|++|...++ .||++=.
T Consensus 5 ~~~~qL~~~f~~l~~pV~l~~f~~~~--------~~~~e~~~ll~e~a~lS--dkI~~~~ 54 (94)
T cd02974 5 NLKQQLKAYLERLENPVELVASLDDS--------EKSAELLELLEEIASLS--DKITLEE 54 (94)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEeCCC--------cchHHHHHHHHHHHHhC--CceEEEE
Confidence 4555555544 3489999998753 45688999999999874 6777744
No 56
>PF10757 YbaJ: Biofilm formation regulator YbaJ; InterPro: IPR019693 YbaJ regulates biofilm formation. It also has an important role in the regulation of motility in the biofilm. YbaJ functions in increasing conjugation, aggregation and decreasing the motility, resulting in an increase of biofilm [].
Probab=33.32 E-value=45 Score=27.36 Aligned_cols=37 Identities=27% Similarity=0.646 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHhhcCCcEEEEeecCCCCCCcEEeecChhHHHHHHHHHh
Q 029397 48 RSISFAELMVKLGEFCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYD 98 (194)
Q Consensus 48 Rsisf~eL~~kLs~l~g~~v~lKYQLP~edLDaLISVssDeDL~nM~eEYd 98 (194)
.++.+.||+..++.+. ..+.||| |+ +.+|...||||-
T Consensus 44 ~nlqLNeLIEHIA~F~-~~fKIKY--p~-----------~~~l~~~ideYL 80 (122)
T PF10757_consen 44 VNLQLNELIEHIAAFI-WNFKIKY--PD-----------ESDLIELIDEYL 80 (122)
T ss_pred hhhhHHHHHHHHHHHH-Hhheecc--Cc-----------HhhHHHHHHHHH
Confidence 4567899999999876 4777888 44 457888899984
No 57
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=33.04 E-value=1e+02 Score=22.64 Aligned_cols=51 Identities=24% Similarity=0.505 Sum_probs=34.7
Q ss_pred cCCCCHH----HHHHHHHh---hcCCcEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhh
Q 029397 47 ERSISFA----ELMVKLGE---FCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRA 100 (194)
Q Consensus 47 ~Rsisf~----eL~~kLs~---l~g~~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~ 100 (194)
.|.++|. .|+.|..| |||.++.+=+.=|++... .+.....++.+++.|..+
T Consensus 15 ~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~---~~~~~~~~~~~l~~~~~~ 72 (83)
T cd00266 15 KRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLY---VFWPSSEVEGVISRFEVL 72 (83)
T ss_pred hhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcc---eecCcHHHHHHHHHHhhc
Confidence 4566664 55555544 789999988888998632 233322399999999765
No 58
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=32.68 E-value=1.9e+02 Score=24.48 Aligned_cols=74 Identities=14% Similarity=0.192 Sum_probs=55.1
Q ss_pred EeecCceEEEEec-----CCCCHHHHHHHHHhhcCCcEEEEeecCCCCCCcE----Eee-cChhHHHHHHHHHhhhCCCC
Q 029397 35 RYVGGLTRVLSVE-----RSISFAELMVKLGEFCGYSVTLRCQLPNGDLETL----ISI-KSDDDLANLIEEYDRAAPSS 104 (194)
Q Consensus 35 rYvGGeTRIi~V~-----Rsisf~eL~~kLs~l~g~~v~lKYQLP~edLDaL----ISV-ssDeDL~nM~eEYdr~~~s~ 104 (194)
-|-|++.||+.+. |.=.++++.+.+++.+-.-+++-=-.|=++ .|= |+. +-.+|++++|++...+..-.
T Consensus 64 f~~m~k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g-~Anvtlsi~~ssm~~~V~~ii~kl~k~e~V~ 142 (150)
T COG4492 64 FYDMLKERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQG-RANVTLSIDTSSMEKDVDKIIEKLRKVEGVE 142 (150)
T ss_pred hhhcccceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCc-eeeEEEEEEchhhhhhHHHHHHHHhccccee
Confidence 4678999999874 555799999999998866667777788765 332 222 23579999999998877667
Q ss_pred ceEEE
Q 029397 105 KIRAI 109 (194)
Q Consensus 105 rlRvF 109 (194)
|+++.
T Consensus 143 kVeiv 147 (150)
T COG4492 143 KVEIV 147 (150)
T ss_pred EEEEe
Confidence 77763
No 59
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=32.31 E-value=1.5e+02 Score=21.11 Aligned_cols=34 Identities=12% Similarity=0.127 Sum_probs=28.1
Q ss_pred CceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEee
Q 029397 39 GLTRVLSVERSISFAELMVKLGEFCGYS---VTLRCQ 72 (194)
Q Consensus 39 GeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKYQ 72 (194)
|.+..+.|+.+.+..||+.++++..|.+ ..|-|.
T Consensus 11 Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~ 47 (73)
T cd01791 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKW 47 (73)
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeC
Confidence 6777889999999999999999988763 456665
No 60
>COG1756 Mra1 Uncharacterized conserved protein [Function unknown]
Probab=31.36 E-value=90 Score=27.93 Aligned_cols=67 Identities=25% Similarity=0.317 Sum_probs=45.8
Q ss_pred CCCCeEeecCceEEEEecCC-CCHHHHHHHHHhhcCCcEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEE
Q 029397 30 MDGQLRYVGGLTRVLSVERS-ISFAELMVKLGEFCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRA 108 (194)
Q Consensus 30 ~Dg~LrYvGGeTRIi~V~Rs-isf~eL~~kLs~l~g~~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRv 108 (194)
-++.+-+|+.+|| +||+ -.|.+||.+|-+.-- .|..+-.+|+.|.. ..|++.+++.+. +.
T Consensus 90 ~~~~vI~v~p~~R---~Prny~RFiGLmeqLlk~~~--------i~~~~~e~Ll~v~~-~~l~d~l~~~~~-------~~ 150 (223)
T COG1756 90 RNDYVIEVNPETR---LPRNYNRFIGLMEQLLKKGR--------IPSNGGETLLEVEK-NPLTDLLPENNK-------VT 150 (223)
T ss_pred cCCEEEEECCCcc---CCCCHHHHHHHHHHHHhcCC--------cCCCCCcEeeeeec-CcHHHhccccCc-------eE
Confidence 4788889999887 5888 468888888876542 24443368888864 567777777652 35
Q ss_pred EEeCCCC
Q 029397 109 ILSPPAS 115 (194)
Q Consensus 109 FLFp~~~ 115 (194)
+||-++.
T Consensus 151 ill~e~G 157 (223)
T COG1756 151 ILLHEKG 157 (223)
T ss_pred EEEcCCC
Confidence 5665543
No 61
>PRK10665 nitrogen regulatory protein P-II 2; Provisional
Probab=31.14 E-value=2e+02 Score=22.49 Aligned_cols=79 Identities=13% Similarity=0.162 Sum_probs=50.3
Q ss_pred EEEEecCCCCHHHHHHHHHhhcCC-cEEE---EeecCCC----------------CCCcEEeecChhHHHHHHHHHhhhC
Q 029397 42 RVLSVERSISFAELMVKLGEFCGY-SVTL---RCQLPNG----------------DLETLISIKSDDDLANLIEEYDRAA 101 (194)
Q Consensus 42 RIi~V~Rsisf~eL~~kLs~l~g~-~v~l---KYQLP~e----------------dLDaLISVssDeDL~nM~eEYdr~~ 101 (194)
.|.+|=|...+.+++..|.++ |. .+++ +=+--.. .--.|--|..|||++..++---+..
T Consensus 3 ~I~AIIRp~kl~~v~~AL~~~-G~~g~Tv~~V~G~G~q~g~~~~~rg~~~~~~~~~k~~ieivv~de~ve~vv~~I~~~a 81 (112)
T PRK10665 3 LVTVIIKPFKLEDVREALSSI-GIQGLTVTEVKGFGRQKGHAELYRGAEYSVNFLPKVKIDVAIADDQLDEVIDIISKAA 81 (112)
T ss_pred EEEEEECHHHHHHHHHHHHHC-CCCcEEEEeeEecCCCCCCcceeccceeeecccceEEEEEEEChHhHHHHHHHHHHHh
Confidence 588899999999999999986 43 2332 1111100 0013444778999999888655543
Q ss_pred ---CCCceEEEEeCCCCCCCcCC
Q 029397 102 ---PSSKIRAILSPPASLKKVSP 121 (194)
Q Consensus 102 ---~s~rlRvFLFp~~~~~~~s~ 121 (194)
..+==++|+.|....-++..
T Consensus 82 ~TG~~GDGkIfV~pV~~~~rIrT 104 (112)
T PRK10665 82 YTGKIGDGKIFVAELQRVIRIRT 104 (112)
T ss_pred ccCCCCCcEEEEEEhhhEEEecC
Confidence 34444789999877655543
No 62
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=31.12 E-value=1.9e+02 Score=20.41 Aligned_cols=32 Identities=22% Similarity=0.407 Sum_probs=27.2
Q ss_pred EeecCceEEEEecCCCCHHHHHHHHHhhcCCc
Q 029397 35 RYVGGLTRVLSVERSISFAELMVKLGEFCGYS 66 (194)
Q Consensus 35 rYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~~ 66 (194)
+-..|.+..+.|+.+.+-.||+.++++..|.+
T Consensus 8 k~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~ 39 (80)
T cd01792 8 KMLGGNEFLVSLRDSMTVSELKQQIAQKIGVP 39 (80)
T ss_pred EeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCC
Confidence 33468888889999999999999999988763
No 63
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.87 E-value=2.5e+02 Score=26.21 Aligned_cols=65 Identities=8% Similarity=0.105 Sum_probs=43.7
Q ss_pred EEEecCCCCHHHHHHHHHhh---cCCcEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEeCCCCCC
Q 029397 43 VLSVERSISFAELMVKLGEF---CGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSPPASLK 117 (194)
Q Consensus 43 Ii~V~Rsisf~eL~~kLs~l---~g~~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLFp~~~~~ 117 (194)
|+.|.+..++.+++.-+.+. .+..++|+|-|-.+=-| ++||++.+.+....+ ..+|=|.|-++..
T Consensus 237 l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvND------s~e~a~~La~llk~l----~~~VnLIPyn~~~ 304 (356)
T PRK14462 237 LMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVND------DLKSAKKLVKLLNGI----KAKVNLILFNPHE 304 (356)
T ss_pred hCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCC------CHHHHHHHHHHHhhc----CcEEEEEeCCCCC
Confidence 34455556667777766543 36789999996543112 688988888877654 3688888887654
No 64
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=28.87 E-value=1.7e+02 Score=20.00 Aligned_cols=27 Identities=4% Similarity=0.003 Sum_probs=23.2
Q ss_pred cCceEEEEecCCCCHHHHHHHHHhhcCC
Q 029397 38 GGLTRVLSVERSISFAELMVKLGEFCGY 65 (194)
Q Consensus 38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~ 65 (194)
.|.+ .|.|+.+.+-.+|+.++++..|.
T Consensus 9 ~g~~-~l~v~~~~TV~~lK~~I~~~~~i 35 (71)
T cd01808 9 KDKE-EIEIAEDASVKDFKEAVSKKFKA 35 (71)
T ss_pred CCCE-EEEECCCChHHHHHHHHHHHhCC
Confidence 4553 78999999999999999998875
No 65
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=28.77 E-value=34 Score=29.50 Aligned_cols=50 Identities=28% Similarity=0.371 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHhhcCC-c--EEEE--eecCCCCCCcEEe-------------ecChhHHHHHHHHHhh
Q 029397 50 ISFAELMVKLGEFCGY-S--VTLR--CQLPNGDLETLIS-------------IKSDDDLANLIEEYDR 99 (194)
Q Consensus 50 isf~eL~~kLs~l~g~-~--v~lK--YQLP~edLDaLIS-------------VssDeDL~nM~eEYdr 99 (194)
|+|.+|+.-++...+- + ..|+ ++|=+.|-+-=|| --+|+||..||||.|+
T Consensus 86 i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~ 153 (172)
T KOG0028|consen 86 ITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADR 153 (172)
T ss_pred echHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcc
Confidence 7788888776665543 1 1122 2233333222222 2479999999999986
No 66
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=27.29 E-value=62 Score=32.23 Aligned_cols=46 Identities=20% Similarity=0.292 Sum_probs=32.9
Q ss_pred ecCCCCceEEEEeeeCCEeeeCCCCC--CeEeecCceEEEEecCCCCH
Q 029397 7 ESKNRAETLKFLCSYGGKILPRSMDG--QLRYVGGLTRVLSVERSISF 52 (194)
Q Consensus 7 ~~~~~~~kVKlmCSyGG~I~PRp~Dg--~LrYvGGeTRIi~V~Rsisf 52 (194)
+....+..+.-...|.+--+|.+.+. .++||.....|+.+.....|
T Consensus 63 ~~~~~~s~~~~~V~F~ayyLPk~~~e~YqfcYv~~~g~V~G~S~pFqf 110 (546)
T PF07888_consen 63 ENYVEGSAVNCQVQFQAYYLPKDDDEFYQFCYVDQKGEVRGASTPFQF 110 (546)
T ss_pred ccccCCCccceEEEECcccCCCCCCCeEEEEEECCCccEEEecCCccc
Confidence 44455666666788999999975553 57999988877776665443
No 67
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=27.14 E-value=1.5e+02 Score=22.17 Aligned_cols=62 Identities=18% Similarity=0.234 Sum_probs=40.5
Q ss_pred CceEEEEecCC---CCHHHHHHHHHhhcCCcE-EEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEeCCC
Q 029397 39 GLTRVLSVERS---ISFAELMVKLGEFCGYSV-TLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSPPA 114 (194)
Q Consensus 39 GeTRIi~V~Rs---isf~eL~~kLs~l~g~~v-~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLFp~~ 114 (194)
|..+|+.+.|+ ....++..++.+.- ..+ .++ .++++.|+++.++++-... ...+.+++.-..
T Consensus 24 g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~-----------~D~~~~~~~~~~~~~~~~~--~~~ld~li~~ag 89 (167)
T PF00106_consen 24 GARVVILTSRSEDSEGAQELIQELKAPG-AKITFIE-----------CDLSDPESIRALIEEVIKR--FGPLDILINNAG 89 (167)
T ss_dssp TTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEE-----------SETTSHHHHHHHHHHHHHH--HSSESEEEEECS
T ss_pred CceEEEEeeecccccccccccccccccc-ccccccc-----------ccccccccccccccccccc--cccccccccccc
Confidence 56688888988 45666666666332 222 222 2378889999999998732 466887776543
No 68
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.94 E-value=2.5e+02 Score=27.14 Aligned_cols=57 Identities=11% Similarity=0.251 Sum_probs=40.4
Q ss_pred CHHHHHHHHHhhcCC-----cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEeCCCCCCCc
Q 029397 51 SFAELMVKLGEFCGY-----SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSPPASLKKV 119 (194)
Q Consensus 51 sf~eL~~kLs~l~g~-----~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLFp~~~~~~~ 119 (194)
.|-+++.|+.+.+.. +|.+= .||| +|||.++.++...+.. ..++-+|.|.+-+-.++
T Consensus 281 ~~~~~i~k~R~~~Pd~~i~tDiIVG--FPgE---------TeedFe~tl~lv~e~~-fd~~~~F~YSpRpGTpA 342 (437)
T COG0621 281 EYLEIIEKLRAARPDIAISTDIIVG--FPGE---------TEEDFEETLDLVEEVR-FDRLHVFKYSPRPGTPA 342 (437)
T ss_pred HHHHHHHHHHHhCCCceEeccEEEE--CCCC---------CHHHHHHHHHHHHHhC-CCEEeeeecCCCCCCcc
Confidence 366777788776643 55543 3999 4999999999888763 67777888776555433
No 69
>PF04599 Pox_G5: Poxvirus G5 protein; InterPro: IPR007678 Protein G5 is found in a number of Poxviruses.
Probab=26.92 E-value=56 Score=31.67 Aligned_cols=29 Identities=31% Similarity=0.393 Sum_probs=23.7
Q ss_pred EeecChhHHHHHHHHHhhhC--CCCceEEEE
Q 029397 82 ISIKSDDDLANLIEEYDRAA--PSSKIRAIL 110 (194)
Q Consensus 82 ISVssDeDL~nM~eEYdr~~--~s~rlRvFL 110 (194)
-||++++||.+++++|-..- ..+++-||+
T Consensus 41 ysv~s~~eL~~~~~~~i~~w~~~~~~VtlFv 71 (425)
T PF04599_consen 41 YSVNSLDELRNSFEEYIQQWIKNNGKVTLFV 71 (425)
T ss_pred hhhCCHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 37999999999999997653 477777776
No 70
>KOG3606 consensus Cell polarity protein PAR6 [Signal transduction mechanisms]
Probab=26.24 E-value=1.3e+02 Score=28.32 Aligned_cols=54 Identities=31% Similarity=0.415 Sum_probs=39.3
Q ss_pred cCceEEEEecCCC--CHHH---HHHHHHhhcCCcEEEEeecCCCCCCcEEeecChhHHHHHH
Q 029397 38 GGLTRVLSVERSI--SFAE---LMVKLGEFCGYSVTLRCQLPNGDLETLISIKSDDDLANLI 94 (194)
Q Consensus 38 GGeTRIi~V~Rsi--sf~e---L~~kLs~l~g~~v~lKYQLP~edLDaLISVssDeDL~nM~ 94 (194)
|-|-|=.+++|+- +|.| |+.++-.+-+.+|.|-|.=+..| |.-|+|||-|..-+
T Consensus 26 daEfRRfsl~r~~~~~f~~F~~Lv~~~H~i~nvdvllgY~d~hgD---LLPinNDDn~~ka~ 84 (358)
T KOG3606|consen 26 DAEFRRFSLPRHSASSFDEFYSLVEHLHHIPNVDVLLGYADTHGD---LLPINNDDNLHKAL 84 (358)
T ss_pred cchhheecccccCcccHHHHHHHHHHHhcCCCceEEEEEecCCCc---eecccCchhHHHHh
Confidence 4556667777763 4555 55555566777999999999887 78899998876544
No 71
>PRK12338 hypothetical protein; Provisional
Probab=25.46 E-value=1.6e+02 Score=27.15 Aligned_cols=61 Identities=11% Similarity=0.263 Sum_probs=46.4
Q ss_pred ecCceEEEEecCCCCHHHHHHHHHhh---cCCcE-EEEeecCCC--CCCcEEeecChhHHHHHHHHHhh
Q 029397 37 VGGLTRVLSVERSISFAELMVKLGEF---CGYSV-TLRCQLPNG--DLETLISIKSDDDLANLIEEYDR 99 (194)
Q Consensus 37 vGGeTRIi~V~Rsisf~eL~~kLs~l---~g~~v-~lKYQLP~e--dLDaLISVssDeDL~nM~eEYdr 99 (194)
+-=.+|+|.|.. +..++...|..+ +|+.+ .+-|.++|+ .|.+-+-|++-+|+++.|+....
T Consensus 202 I~e~s~~i~~~H--~~~~~~~El~~I~vd~Gg~v~dV~h~iyG~~~~i~~~l~i~s~~dv~~Fi~~~~~ 268 (319)
T PRK12338 202 IREVCVTVTLQH--SVDDLDEVIEIIIKRHGGRITDISYPIPGFKDPLKREVNVSDPDEAEKFIKRLNE 268 (319)
T ss_pred HHhheEEEEEeC--CHHHHHHHHHeEEecCCCEEEEecccCCCCCceeEEEEccCCHHHHHHHHHHHhh
Confidence 333467777776 568888888888 45533 244999995 79999999999999999987653
No 72
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=24.52 E-value=37 Score=21.15 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=12.9
Q ss_pred CCEeeeCCC-CCCeEeecCceEEE
Q 029397 22 GGKILPRSM-DGQLRYVGGLTRVL 44 (194)
Q Consensus 22 GG~I~PRp~-Dg~LrYvGGeTRIi 44 (194)
||.-+.+.. +-...| ||+..+|
T Consensus 5 ~~~~~~~~~~~~~~~~-~~~~~~i 27 (46)
T TIGR03831 5 GGEELEGKTTTETYEY-GGELIVI 27 (46)
T ss_pred CCceecceEEEEEEEe-CCEEEEE
Confidence 555554433 455667 7776666
No 73
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=24.31 E-value=1.8e+02 Score=24.75 Aligned_cols=61 Identities=20% Similarity=0.277 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHhhcCCcEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEeCC
Q 029397 50 ISFAELMVKLGEFCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSPP 113 (194)
Q Consensus 50 isf~eL~~kLs~l~g~~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLFp~ 113 (194)
-|+++-..++-+-...+|.|.+.+..+ |+.-. -.-.+++..|++||.+.. +++|++=..-+
T Consensus 10 ysLS~~T~~~L~~L~~pV~i~~~~s~~-l~~~~-~~~~~~v~~lL~~y~~~s-~g~i~v~~iDp 70 (271)
T PF09822_consen 10 YSLSDQTKKVLKSLDEPVTITVYFSRE-LPPEL-SPLRKQVRDLLDEYARYS-PGKIKVEFIDP 70 (271)
T ss_pred ccCCHHHHHHHHhCCCCEEEEEEECCC-cchhh-hHHHHHHHHHHHHHHHhC-CCceEEEEECC
Confidence 456666666666666799999998874 44411 234578999999999874 45888866654
No 74
>PRK10858 nitrogen regulatory protein P-II 1; Provisional
Probab=23.82 E-value=3.1e+02 Score=21.39 Aligned_cols=80 Identities=13% Similarity=0.189 Sum_probs=49.7
Q ss_pred EEEEecCCCCHHHHHHHHHhhcCC-cEEE---EeecC---------C-C---CC--C-cEEeecChhHHHHHHHHHhhhC
Q 029397 42 RVLSVERSISFAELMVKLGEFCGY-SVTL---RCQLP---------N-G---DL--E-TLISIKSDDDLANLIEEYDRAA 101 (194)
Q Consensus 42 RIi~V~Rsisf~eL~~kLs~l~g~-~v~l---KYQLP---------~-e---dL--D-aLISVssDeDL~nM~eEYdr~~ 101 (194)
.|.++=|.-.+.+++..|.++ |. .+++ +=+-- + + +| . .|-=|.+|||++..++---+..
T Consensus 3 ~I~AIIRp~kl~~v~~aL~~~-G~~g~Tv~~V~G~G~q~g~~~~~~~~~~~~~~~pK~~ieivv~D~~v~~vv~~I~~~a 81 (112)
T PRK10858 3 KIDAIIKPFKLDDVREALAEV-GITGMTVTEVKGFGRQKGHTELYRGAEYMVDFLPKVKIEIVVPDDIVDTCVDTIIRTA 81 (112)
T ss_pred EEEEEECHHHHHHHHHHHHHC-CCCeEEEEEeEecCCCCCCceeeecceeeccceeeEEEEEEEChHhHHHHHHHHHHHh
Confidence 578899999999999999986 43 2222 11100 0 0 11 1 2344667888988887654443
Q ss_pred ---CCCceEEEEeCCCCCCCcCCC
Q 029397 102 ---PSSKIRAILSPPASLKKVSPP 122 (194)
Q Consensus 102 ---~s~rlRvFLFp~~~~~~~s~~ 122 (194)
..+==++|+.|....-++..+
T Consensus 82 ~TG~~GDGkIfV~pV~~~vrIrTg 105 (112)
T PRK10858 82 QTGKIGDGKIFVFDVARVIRIRTG 105 (112)
T ss_pred ccCCCCCcEEEEEEhhhEEEecCC
Confidence 344447899998776555443
No 75
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=23.34 E-value=2.2e+02 Score=22.27 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=30.5
Q ss_pred cEEEEeecCCC-CCCcEEeecChhHHHHHHHHHhhhCCCCceEEE
Q 029397 66 SVTLRCQLPNG-DLETLISIKSDDDLANLIEEYDRAAPSSKIRAI 109 (194)
Q Consensus 66 ~v~lKYQLP~e-dLDaLISVssDeDL~nM~eEYdr~~~s~rlRvF 109 (194)
+..+.|--|.- |+-+-.++..+|+++++.....+- +|-+++
T Consensus 74 ~~~i~yl~P~~~~~~a~~~~~~~~~~~~~~~~l~~~---gr~~~~ 115 (138)
T TIGR02447 74 DSHIRYLAPVTGDPVANCEAPDLESWEAFLATLQRG---GKARVK 115 (138)
T ss_pred EeeeEEcCCcCCCeEEEEEcCCHHHHHHHHHHHHhC---CceEEE
Confidence 56799999985 555677788899999999888863 444443
No 76
>PF11575 FhuF_C: FhuF 2Fe-2S C-terminal domain; InterPro: IPR024726 Ferric iron reductase (FhuF) is involved in the reduction of ferric iron in cytoplasmic ferrioxamine B []. This entry represents the C-terminal domain that contains 4 conserved cysteine residues found to be part of a 2Fe-2S cluster [].; GO: 0051537 2 iron, 2 sulfur cluster binding
Probab=23.29 E-value=60 Score=19.04 Aligned_cols=11 Identities=36% Similarity=0.649 Sum_probs=9.1
Q ss_pred EEEeecCCCCC
Q 029397 68 TLRCQLPNGDL 78 (194)
Q Consensus 68 ~lKYQLP~edL 78 (194)
.|.|++|++++
T Consensus 5 Cl~y~~~~~~~ 15 (22)
T PF11575_consen 5 CLYYRLPGGGY 15 (22)
T ss_pred eeeEEcCCCCc
Confidence 58999999864
No 77
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=22.68 E-value=2.3e+02 Score=20.29 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=28.3
Q ss_pred EeecCce-EEEE-ecCCCCHHHHHHHHHhhcCCc---EEEEee
Q 029397 35 RYVGGLT-RVLS-VERSISFAELMVKLGEFCGYS---VTLRCQ 72 (194)
Q Consensus 35 rYvGGeT-RIi~-V~Rsisf~eL~~kLs~l~g~~---v~lKYQ 72 (194)
+-..|.+ .-|. |+.+.+..+|+.++++..|.+ ..|-|.
T Consensus 6 k~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~ 48 (78)
T cd01797 6 RTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYR 48 (78)
T ss_pred EcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeC
Confidence 3456765 3564 889999999999999988763 456664
No 78
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=22.55 E-value=2.4e+02 Score=22.82 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=47.8
Q ss_pred EeecCceEEEEecCCCCHHHHHHHHHhhcCC--cEEEEe-----ecC--CCCCCcEEeecChhHHHHHHHHHhhh-CCCC
Q 029397 35 RYVGGLTRVLSVERSISFAELMVKLGEFCGY--SVTLRC-----QLP--NGDLETLISIKSDDDLANLIEEYDRA-APSS 104 (194)
Q Consensus 35 rYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~--~v~lKY-----QLP--~edLDaLISVssDeDL~nM~eEYdr~-~~s~ 104 (194)
+..|+..+|+.||.+-...++..+-.+..|. .+.+.. .++ .+..|..+.-...+++..++++..++ .+.+
T Consensus 60 ~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG 139 (198)
T PRK00377 60 LLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGGSEKLKEIISASWEIIKKGG 139 (198)
T ss_pred HHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECCCcccHHHHHHHHHHHcCCCc
Confidence 3456677999999998887776665555552 233211 122 24578888866778899999987665 4456
Q ss_pred ce
Q 029397 105 KI 106 (194)
Q Consensus 105 rl 106 (194)
++
T Consensus 140 ~l 141 (198)
T PRK00377 140 RI 141 (198)
T ss_pred EE
Confidence 66
No 79
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=21.88 E-value=2.4e+02 Score=21.59 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=40.9
Q ss_pred ecCceEEEEecCCCCHHHHHHHHHhhcCCcEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhh
Q 029397 37 VGGLTRVLSVERSISFAELMVKLGEFCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRA 100 (194)
Q Consensus 37 vGGeTRIi~V~Rsisf~eL~~kLs~l~g~~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~ 100 (194)
-.|.++.|.|+..++-.|....|.+..... +.++ =+|+-..-|--|++.+|.++.+
T Consensus 10 ~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~-------~~~~-W~LvE~~P~l~lER~~EDHE~v 65 (85)
T cd01787 10 EDGASKSLEVDERMTARDVCQLLVDKNHCQ-------DDSS-WTLVEHLPHLQLERLFEDHELV 65 (85)
T ss_pred cCCCeeEEEEcCCCcHHHHHHHHHHHhCCC-------CCCC-eEEEEecchhhhhhhccchHHH
Confidence 458899999999999999999999987642 2222 3566666666667777766654
No 80
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=21.24 E-value=1e+02 Score=22.66 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=19.3
Q ss_pred CceEEEEecCCCCHHHHHHHHHhhcCC
Q 029397 39 GLTRVLSVERSISFAELMVKLGEFCGY 65 (194)
Q Consensus 39 GeTRIi~V~Rsisf~eL~~kLs~l~g~ 65 (194)
|-.|| .|+.+.++.+|..|+.+.++.
T Consensus 14 G~~Ri-e~~~~~t~~~L~~kI~~~l~~ 39 (80)
T PF11543_consen 14 GMKRI-EVSPSSTLSDLKEKISEQLSI 39 (80)
T ss_dssp EEEEE-EE-TTSBHHHHHHHHHHHS--
T ss_pred CCEEE-EcCCcccHHHHHHHHHHHcCC
Confidence 34455 689999999999999998865
No 81
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=20.90 E-value=2.2e+02 Score=26.80 Aligned_cols=46 Identities=24% Similarity=0.403 Sum_probs=32.5
Q ss_pred HHHHHHHHhhc---CCcEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEE
Q 029397 53 AELMVKLGEFC---GYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRA 108 (194)
Q Consensus 53 ~eL~~kLs~l~---g~~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRv 108 (194)
.++++.|.+++ ..+|.|+.++.+.+ ..++++.|++|...++ .||.+
T Consensus 4 ~~~~~~l~~~~~~~~~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~s--~~i~~ 52 (517)
T PRK15317 4 ANLKTQLKQYLELLERPIELVASLDDSE--------KSAELKELLEEIASLS--DKITV 52 (517)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEeCCCc--------hHHHHHHHHHHHHHhC--CceEE
Confidence 35666666655 34899999988532 4588999999998874 45554
No 82
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=20.82 E-value=4e+02 Score=20.85 Aligned_cols=44 Identities=23% Similarity=0.286 Sum_probs=36.3
Q ss_pred eEeecCceEEEEecCCCCHHHHHHHHHhhcCC----cEEEEeecCCCC
Q 029397 34 LRYVGGLTRVLSVERSISFAELMVKLGEFCGY----SVTLRCQLPNGD 77 (194)
Q Consensus 34 LrYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~----~v~lKYQLP~ed 77 (194)
+...+|.+.-+.|+.+++-.|+...+++.+|. -+.|.+.-++++
T Consensus 8 V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~ 55 (207)
T smart00295 8 VYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDED 55 (207)
T ss_pred EEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCC
Confidence 45567889999999999999999999998876 467877776654
No 83
>PRK13696 hypothetical protein; Provisional
Probab=20.46 E-value=45 Score=24.35 Aligned_cols=41 Identities=24% Similarity=0.214 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHHhhcCCcEEEEeecCCCCCCcEEeecChhHHHHHHHH
Q 029397 48 RSISFAELMVKLGEFCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEE 96 (194)
Q Consensus 48 Rsisf~eL~~kLs~l~g~~v~lKYQLP~edLDaLISVssDeDL~nM~eE 96 (194)
-++||+|++.+|.+.-... .++|..+.-+-+||+.+.|.+|
T Consensus 21 ~~~SFSevi~~L~~~~~~~--------~~~l~~~~Gil~dee~~e~~~~ 61 (62)
T PRK13696 21 GDKSFSEVIRELIEKKKGN--------LDKLMKAFGILSEEEAEELKKE 61 (62)
T ss_pred CCCCHHHHHHHHHHHhhcc--------HHHHHHHHCCCCHHHHHHHHhh
Confidence 4579999999998422111 1223344455678888888765
Done!