Query 029397
Match_columns 194
No_of_seqs 114 out of 185
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 20:08:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029397.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029397hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cu1_A Mitogen-activated prote 99.7 1.1E-17 3.8E-22 129.1 11.1 79 37-119 15-93 (103)
2 1vd2_A Protein kinase C, IOTA 98.9 9.8E-09 3.4E-13 76.8 9.7 71 38-112 14-88 (89)
3 2jrh_A Mitogen-activated prote 98.3 3.8E-06 1.3E-10 63.9 10.1 73 38-114 12-84 (94)
4 2npt_B Mitogen-activated prote 98.3 4.8E-06 1.6E-10 64.0 9.3 71 38-112 28-98 (100)
5 2c60_A Human mitogen-activated 98.3 5.6E-06 1.9E-10 64.5 9.8 71 38-112 39-109 (111)
6 1q1o_A Cell division control p 98.2 6.5E-06 2.2E-10 62.8 8.1 68 39-110 22-97 (98)
7 2kkc_A Sequestosome-1; P62, PB 98.1 1.1E-05 3.6E-10 61.7 8.5 68 37-111 18-100 (102)
8 1pqs_A Cell division control p 98.0 1.3E-05 4.5E-10 58.3 6.5 68 40-111 2-77 (77)
9 2ktr_A Sequestosome-1; autopha 97.9 3E-05 1E-09 60.7 7.9 67 38-111 34-115 (117)
10 1oey_A P67-PHOX, neutrophil cy 97.4 0.00027 9.4E-09 52.3 6.2 68 34-110 10-80 (83)
11 1wmh_B Partitioning defective- 97.4 0.00085 2.9E-08 50.1 8.5 68 35-110 11-83 (86)
12 2bkf_A Zinc-finger protein NBR 97.2 0.0034 1.2E-07 47.1 9.9 69 38-111 14-85 (87)
13 1oey_J P40-PHOX, neutrophil cy 96.9 0.003 1E-07 49.0 7.5 68 38-112 17-89 (107)
14 1wj6_A KIAA0049 protein, RSGI 96.8 0.0039 1.3E-07 48.0 7.1 71 37-112 21-94 (101)
15 1ip9_A BEM1 protein; ubiquitin 96.1 0.019 6.4E-07 42.9 6.9 57 37-96 19-76 (85)
16 2npt_A Dual specificity mitoge 91.6 0.3 1E-05 37.6 5.3 50 48-100 35-86 (106)
17 3m62_B UV excision repair prot 91.5 0.081 2.8E-06 38.7 2.0 71 34-117 6-79 (106)
18 1wia_A Hypothetical ubiquitin- 79.7 4.9 0.00017 27.9 6.0 34 38-71 16-49 (95)
19 3a9j_A Ubiquitin; protein comp 78.3 4.3 0.00015 26.1 5.0 37 35-71 6-45 (76)
20 2kzr_A Ubiquitin thioesterase 76.3 2.3 7.7E-05 29.5 3.3 44 34-78 5-52 (86)
21 1hbw_A Regulatory protein GAL4 75.6 0.46 1.6E-05 33.2 -0.4 29 69-97 19-47 (57)
22 2bwf_A Ubiquitin-like protein 73.9 7.4 0.00025 25.3 5.2 35 38-72 12-49 (77)
23 1ndd_A NEDD8, protein (ubiquit 72.3 7.5 0.00026 24.9 4.9 36 36-71 7-45 (76)
24 2dzi_A Ubiquitin-like protein 70.2 8.7 0.0003 25.2 4.9 34 38-71 16-52 (81)
25 4dwf_A HLA-B-associated transc 70.0 10 0.00035 25.7 5.4 64 35-112 11-77 (90)
26 3ce8_A Putative PII-like nitro 69.4 4.7 0.00016 31.1 3.9 95 25-119 6-119 (120)
27 3mtn_B UBA80, ubcep1, ubiquiti 69.2 8.8 0.0003 25.3 4.8 37 35-71 9-48 (85)
28 1yx5_B Ubiquitin; proteasome, 68.1 11 0.00037 26.3 5.3 37 35-71 6-45 (98)
29 1wx7_A Ubiquilin 3; ubiquitin- 67.9 29 0.001 24.5 7.7 31 42-72 29-62 (106)
30 3phx_B Ubiquitin-like protein 67.9 11 0.00039 24.8 5.2 37 35-71 10-49 (79)
31 1wh3_A 59 kDa 2'-5'-oligoadeny 67.3 11 0.00039 25.2 5.2 34 38-71 16-52 (87)
32 3n3k_B Ubiquitin; hydrolase, p 66.9 10 0.00034 25.1 4.7 37 35-71 9-48 (85)
33 3k9o_B Ubiquitin, UBB+1; E2-25 64.9 14 0.00046 25.3 5.2 67 34-113 6-75 (96)
34 4eew_A Large proline-rich prot 64.9 13 0.00046 25.0 5.2 38 34-71 22-62 (88)
35 2hj8_A Interferon-induced 17 k 64.7 11 0.00039 25.8 4.8 63 37-112 12-77 (88)
36 2kd0_A LRR repeats and ubiquit 61.5 13 0.00045 25.6 4.6 35 37-71 19-56 (85)
37 3v6c_B Ubiquitin; structural g 60.6 14 0.00047 25.4 4.6 36 36-71 24-62 (91)
38 4hcn_B Polyubiquitin, ubiquiti 60.4 14 0.00047 26.0 4.7 38 34-71 27-67 (98)
39 3q3f_A Ribonuclease/ubiquitin 59.8 13 0.00045 30.2 5.1 51 15-66 87-142 (189)
40 3dbh_I NEDD8; cell cycle, acti 59.6 13 0.00044 24.8 4.3 32 35-66 18-49 (88)
41 1wjn_A Tubulin-folding protein 59.3 25 0.00085 24.6 5.9 35 38-72 21-58 (97)
42 2kk8_A Uncharacterized protein 58.9 20 0.00067 24.8 5.2 38 35-72 16-56 (84)
43 1v86_A DNA segment, CHR 7, way 58.8 6.6 0.00023 27.8 2.8 28 39-66 26-53 (95)
44 1sif_A Ubiquitin; hydrophobic 58.7 17 0.00059 24.9 4.9 37 35-71 15-54 (88)
45 4fbj_B NEDD8; effector-HOST ta 55.4 21 0.00073 24.4 4.9 37 35-71 6-45 (88)
46 2pjh_A Protein NPL4, nuclear p 55.0 4.1 0.00014 28.6 1.1 39 36-75 11-52 (80)
47 1wy8_A NP95-like ring finger p 54.7 28 0.00096 23.4 5.3 34 38-71 16-54 (89)
48 2uyz_B Small ubiquitin-related 54.1 27 0.00092 22.9 5.1 35 37-71 11-48 (79)
49 2ojr_A Ubiquitin; lanthide-bin 53.1 26 0.0009 25.1 5.3 35 37-71 43-80 (111)
50 2wyq_A HHR23A, UV excision rep 51.9 34 0.0012 22.6 5.4 38 35-72 11-54 (85)
51 2kdi_A Ubiquitin, vacuolar pro 51.8 25 0.00085 25.7 5.0 39 34-72 14-55 (114)
52 1v5t_A 8430435I17RIK protein; 51.2 13 0.00044 25.8 3.2 28 38-65 15-43 (90)
53 1ttn_A DC-UBP, dendritic cell- 50.8 21 0.00073 25.4 4.4 61 38-111 32-95 (106)
54 1wxv_A BAG-family molecular ch 50.6 32 0.0011 23.5 5.1 34 39-72 16-57 (92)
55 3vdz_A Ubiquitin-40S ribosomal 50.4 29 0.00098 25.1 5.1 36 36-71 42-80 (111)
56 1wgg_A Ubiquitin carboxyl-term 50.3 21 0.00073 25.2 4.3 28 38-65 15-43 (96)
57 4hc4_A Protein arginine N-meth 48.7 40 0.0014 29.7 6.7 75 38-114 104-198 (376)
58 1wyw_B Ubiquitin-like protein 48.7 33 0.0011 24.0 5.1 35 37-71 29-66 (97)
59 3u30_A Ubiquitin, linear DI-ub 48.1 49 0.0017 25.1 6.4 31 35-65 102-132 (172)
60 2eg2_A Nitrogen regulatory pro 47.7 65 0.0022 23.2 6.7 81 42-122 3-105 (112)
61 3b08_A Polyubiquitin-C, ubiqui 45.2 83 0.0028 22.6 7.8 31 35-65 82-112 (152)
62 2kan_A Uncharacterized protein 45.1 40 0.0014 23.6 5.0 33 38-71 24-59 (94)
63 1v5o_A 1700011N24RIK protein; 45.0 26 0.0009 24.7 4.1 28 38-65 20-47 (102)
64 3u30_A Ubiquitin, linear DI-ub 43.5 38 0.0013 25.7 5.1 38 35-72 26-66 (172)
65 2l7r_A Ubiquitin-like protein 43.4 29 0.001 24.1 4.1 34 39-72 27-63 (93)
66 2faz_A Ubiquitin-like containi 42.9 57 0.0019 21.2 5.3 34 38-71 11-49 (78)
67 1we7_A SF3A1 protein; structur 40.9 42 0.0014 24.2 4.7 35 37-71 43-80 (115)
68 3b1l_X E3 ubiquitin-protein li 46.5 5.9 0.0002 25.9 0.0 32 35-66 6-37 (76)
69 2klc_A Ubiquilin-1; ubiquitin- 40.0 51 0.0017 23.3 5.0 33 39-71 34-69 (101)
70 3q7e_A Protein arginine N-meth 40.0 79 0.0027 26.6 7.0 62 39-101 88-163 (349)
71 1uel_A HHR23B, UV excision rep 39.5 57 0.0019 22.5 5.1 65 36-113 7-77 (95)
72 3rt3_B Ubiquitin-like protein 39.4 66 0.0023 23.8 5.8 32 35-66 8-39 (159)
73 2i1s_A Hypothetical protein; m 38.4 53 0.0018 26.0 5.4 37 41-77 23-74 (188)
74 3p57_A Myocyte-specific enhanc 37.9 79 0.0027 23.2 5.8 45 53-101 25-72 (90)
75 3b08_A Polyubiquitin-C, ubiqui 37.9 54 0.0019 23.6 5.0 35 37-71 8-45 (152)
76 1wx8_A Riken cDNA 4931431F19; 37.6 39 0.0013 23.1 4.0 27 39-65 26-52 (96)
77 1j8c_A Ubiquitin-like protein 37.3 59 0.002 24.2 5.2 34 39-72 41-77 (125)
78 3m63_B Ubiquitin domain-contai 37.1 12 0.00043 26.7 1.3 28 38-65 36-63 (101)
79 1egw_A MADS box transcription 34.8 70 0.0024 22.7 4.9 45 53-101 25-72 (77)
80 3ady_A DOTD; 3-layer(BAB) sand 34.0 67 0.0023 25.7 5.2 77 17-95 39-121 (148)
81 3plu_A Ubiquitin-like modifier 33.9 64 0.0022 23.7 4.8 38 35-72 27-67 (93)
82 1uh6_A Ubiquitin-like 5; beta- 33.3 53 0.0018 24.2 4.3 36 37-72 36-74 (100)
83 1yqb_A Ubiquilin 3; structural 32.8 68 0.0023 22.6 4.7 33 38-71 31-66 (100)
84 3rt3_B Ubiquitin-like protein 32.8 1.5E+02 0.005 21.9 7.4 36 36-71 88-126 (159)
85 1vfj_A Nitrogen regulatory pro 31.2 99 0.0034 22.4 5.4 81 42-122 3-105 (116)
86 1y8x_B Ubiquitin-activating en 31.0 23 0.0008 26.2 2.0 25 38-62 3-27 (98)
87 1we6_A Splicing factor, putati 30.8 58 0.002 23.2 4.1 34 38-71 39-76 (111)
88 2dzm_A FAS-associated factor 1 28.7 55 0.0019 23.8 3.7 29 38-66 17-45 (100)
89 2daf_A FLJ35834 protein; hypot 28.5 88 0.003 24.1 4.9 63 38-116 25-93 (118)
90 4aff_A Nitrogen regulatory pro 26.0 2E+02 0.0068 21.2 8.3 83 41-123 2-106 (116)
91 2kjr_A CG11242; UBL, ubiquitin 25.8 1.3E+02 0.0045 21.3 5.2 32 41-72 29-63 (95)
92 2hy5_A Putative sulfurtransfer 25.7 16 0.00055 26.8 0.3 31 70-100 95-125 (130)
93 1wf9_A NPL4 family protein; be 25.5 73 0.0025 22.8 3.8 27 38-65 16-43 (107)
94 3bzq_A Nitrogen regulatory pro 25.5 1.9E+02 0.0063 20.7 6.0 82 41-122 4-107 (114)
95 3nku_A DRRA, SIDM; posttransla 25.2 44 0.0015 27.6 2.8 25 76-100 104-128 (213)
96 3l0w_B Monoubiquitinated proli 25.0 1.1E+02 0.0036 23.9 4.9 31 35-65 6-36 (169)
97 2gw8_A PII signal transduction 24.7 2E+02 0.0068 20.7 7.5 83 40-122 3-107 (114)
98 3u5e_m 60S ribosomal protein L 24.3 16 0.00055 27.0 0.0 32 35-66 6-37 (128)
99 2eke_C Ubiquitin-like protein 23.2 1.5E+02 0.0052 21.8 5.2 34 38-71 39-75 (106)
100 2kj6_A Tubulin folding cofacto 23.2 1.2E+02 0.004 21.8 4.5 32 41-72 28-62 (97)
101 1hwu_A PII protein; herbaspiri 23.2 2.1E+02 0.0071 20.4 6.6 81 42-122 3-105 (112)
102 3lmb_A Uncharacterized protein 22.8 1.2E+02 0.004 23.8 4.8 48 66-113 90-139 (165)
103 4b6w_A Tubulin-specific chaper 22.4 1E+02 0.0035 21.4 4.0 29 44-72 19-50 (86)
104 2o66_A PII protein; regulation 21.9 1.2E+02 0.0041 23.1 4.6 83 41-123 14-119 (135)
105 1x1m_A Ubiquitin-like protein 21.5 1.2E+02 0.0043 21.4 4.3 32 34-65 17-62 (107)
106 2j9c_A GLNK1, hypothetical nit 21.5 2.4E+02 0.0082 20.5 6.2 83 41-123 4-108 (119)
107 1v2y_A 3300001G02RIK protein; 21.2 68 0.0023 23.6 2.9 29 37-65 15-43 (105)
108 1wgd_A Homocysteine-responsive 21.0 1.6E+02 0.0054 20.0 4.7 25 41-65 21-47 (93)
109 1wju_A NEDD8 ultimate buster-1 20.9 97 0.0033 22.8 3.7 28 38-65 28-55 (100)
110 3a4r_A Nfatc2-interacting prot 20.7 1.9E+02 0.0066 19.5 5.0 34 38-71 16-53 (79)
111 2kpo_A Rossmann 2X2 fold prote 20.7 1.8E+02 0.006 21.9 5.1 65 43-107 5-81 (110)
112 1wm3_A Ubiquitin-like protein 20.5 1.7E+02 0.0058 19.2 4.6 34 38-71 10-46 (72)
113 3ek2_A Enoyl-(acyl-carrier-pro 20.1 3E+02 0.01 21.1 7.0 61 41-114 41-101 (271)
No 1
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=99.74 E-value=1.1e-17 Score=129.10 Aligned_cols=79 Identities=24% Similarity=0.344 Sum_probs=72.3
Q ss_pred ecCceEEEEecCCCCHHHHHHHHHhhcCCcEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEeCCCCC
Q 029397 37 VGGLTRVLSVERSISFAELMVKLGEFCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSPPASL 116 (194)
Q Consensus 37 vGGeTRIi~V~Rsisf~eL~~kLs~l~g~~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLFp~~~~ 116 (194)
.+||+|||.|+|.++|.||..|+.++||..+.|.|+ +++.||+++|+|||++.||+|||.....-||+||.+++..
T Consensus 15 ~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~ldL~y~----n~EllIpl~sQeDLDkaIellDrss~~kSLrIlL~~~~~~ 90 (103)
T 2cu1_A 15 HRGEKRILQFPRPVKLEDLRSKAKIAFGQSMDLHYT----NNELVIPLTTQDDLDKAVELLDRSIHMKSLKILLVINGST 90 (103)
T ss_dssp ETTEEEEEEEESSCCHHHHHHHHHHHHSSCEEEEEC----SSSSCEECCSHHHHHHHHHHHHHCSSCCSEEEEEEECCCC
T ss_pred ecCeEEEEeccCCccHHHHHHHHHHHhCCeeeEEEe----cceEEEeccCHHHHHHHHHHHccCCcccceEEEEecCCCC
Confidence 479999999999999999999999999999999999 6799999999999999999999987777788899988766
Q ss_pred CCc
Q 029397 117 KKV 119 (194)
Q Consensus 117 ~~~ 119 (194)
...
T Consensus 91 ~~~ 93 (103)
T 2cu1_A 91 QAT 93 (103)
T ss_dssp SCC
T ss_pred ccc
Confidence 533
No 2
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=98.89 E-value=9.8e-09 Score=76.83 Aligned_cols=71 Identities=20% Similarity=0.329 Sum_probs=62.7
Q ss_pred cCceEEEEecCCCCHHHHHHHHHhhcCC----cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEeC
Q 029397 38 GGLTRVLSVERSISFAELMVKLGEFCGY----SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSP 112 (194)
Q Consensus 38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~----~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLFp 112 (194)
+|+.+++.|+.+++|.+|..|+.++|+. .+++||- +|| ..+|++++|+||+..+.-|+.. +..+|.+.+||
T Consensus 14 ~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~--DEe-GD~itisSd~EL~eAl~l~~~n-~~~~l~ihvf~ 88 (89)
T 1vd2_A 14 RGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWI--DEE-GDPCTVSSQLELEEAFRLYELN-KDSELLIHVFP 88 (89)
T ss_dssp SSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEEC--CSS-SCCEECCSHHHHHHHHHHHHHT-SCCCEEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEE--CCC-CCcccccCHHHHHHHHHHHHcc-CCCCEEEEEcc
Confidence 3568999999999999999999999984 6999998 776 7899999999999999988764 47889999997
No 3
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=98.35 E-value=3.8e-06 Score=63.93 Aligned_cols=73 Identities=25% Similarity=0.440 Sum_probs=64.8
Q ss_pred cCceEEEEecCCCCHHHHHHHHHhhcCCcEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEeCCC
Q 029397 38 GGLTRVLSVERSISFAELMVKLGEFCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSPPA 114 (194)
Q Consensus 38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLFp~~ 114 (194)
-||.|||.++|.+.|.||..|+...||..+.+-|- ++ +-+|-+.|.|||+.-||-.||...---||+.|....
T Consensus 12 ~gEKRIi~f~RPvkf~dl~qkv~~afGq~ldl~y~--nn--EL~iPL~~Q~DLDkAvelLDrs~~mkSLRIlL~~~~ 84 (94)
T 2jrh_A 12 NGERRIIAFSRPVKYEDVEHKVTTVFGQPLDLHYM--NN--ELSILLKNQDDLDKAIDILDRSSSMKSLRILLLSQD 84 (94)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHHHHCSSEEEEEE--CS--SCEEECCSHHHHHHHHHHHHHSTTTTEEEEEEEECS
T ss_pred cCceEEEecCCCccHHHHHHHHHHHhCCeeeeEEe--cc--eeEEeccCHHHHHHHHHHhccCccccceEEEEEcCC
Confidence 48999999999999999999999999999999998 33 579999999999999999999766666788887643
No 4
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=98.28 E-value=4.8e-06 Score=64.03 Aligned_cols=71 Identities=27% Similarity=0.408 Sum_probs=62.9
Q ss_pred cCceEEEEecCCCCHHHHHHHHHhhcCCcEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEeC
Q 029397 38 GGLTRVLSVERSISFAELMVKLGEFCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSP 112 (194)
Q Consensus 38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLFp 112 (194)
-||.|||.++|.+.|.||..|+...||..+.|-|- ++ +-+|-+.|.|||+.-||-.||...---||+.|..
T Consensus 28 ~gEkRIi~f~RPv~f~el~~kv~~afGq~ldl~y~--nn--EL~iPL~~Q~DLDkAvelLDrs~~~kSLrIlL~~ 98 (100)
T 2npt_B 28 RGEKRILQFPRPVKLEDLRSKAKIAFGQSMDLHYT--NN--ELVIPLTTQDDLDKAVELLDRSIHMKSLKILLVI 98 (100)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHHHHTSCEEEEEE--ET--TEEEECCCHHHHHHHHHHHHHCSSCCSEEEEEEE
T ss_pred cCceEEEecCCCccHHHHHHHHHHHhCCeeeeEEe--cc--eeEEecccHHHHHHHHHHhccCccccceEEEEec
Confidence 47999999999999999999999999999999998 33 5799999999999999999997665667887753
No 5
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=98.27 E-value=5.6e-06 Score=64.51 Aligned_cols=71 Identities=25% Similarity=0.455 Sum_probs=63.0
Q ss_pred cCceEEEEecCCCCHHHHHHHHHhhcCCcEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEeC
Q 029397 38 GGLTRVLSVERSISFAELMVKLGEFCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSP 112 (194)
Q Consensus 38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLFp 112 (194)
-||.|||.++|.+.|.||..|+...||..+.|-|- ++ +-+|-+.|.|||+.-||-.||...---||+.|..
T Consensus 39 ~gEKRIiqf~RPvkf~dl~qkv~~afGq~ldl~y~--nn--EL~IPL~~Q~DLDkAvelLDrs~~mkSLRIlL~~ 109 (111)
T 2c60_A 39 NGERRIIAFSRPVKYEDVEHKVTTVFGQPLDLHYM--NN--ELSILLKNQDDLDKAIDILDRSSSMKSLRILLLS 109 (111)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHHHHSSCCEEEEE--CS--SCEEECCSHHHHHHHHHHHHHCSSCCSEEEEEEC
T ss_pred cCceEEEecCCCccHHHHHHHHHHHhCCeeeeEEe--cc--eEEEecccHHHHHHHHHHhccCccccceEEEEec
Confidence 47999999999999999999999999999999998 33 5799999999999999999997655667888764
No 6
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=98.18 E-value=6.5e-06 Score=62.82 Aligned_cols=68 Identities=18% Similarity=0.225 Sum_probs=55.0
Q ss_pred CceEEEEecCCCCHHHHHHHHHhhcCC--------cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEE
Q 029397 39 GLTRVLSVERSISFAELMVKLGEFCGY--------SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAIL 110 (194)
Q Consensus 39 GeTRIi~V~Rsisf~eL~~kLs~l~g~--------~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFL 110 (194)
++++.|.|+.+|+|.+|..|+.+.++. .+.|||| +|| ...|++.+||||+-.+++..... .+++-+.+
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYk--DEd-GD~Vtl~sddDl~~A~e~~~e~~-~~~l~Iwv 97 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQ--DED-GDFVVLGSDEDWNVAKEMLAENN-EKFLNIRL 97 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEE--CSS-SCEEEECSHHHHHHHHHHHHHTT-CCEEEEEE
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEE--cCC-CCEEEEcCHHHHHHHHHHHHhhh-cCeEEEEE
Confidence 689999999999999999999886542 2679999 454 48999999999999998876542 46666654
No 7
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=98.13 E-value=1.1e-05 Score=61.69 Aligned_cols=68 Identities=13% Similarity=0.130 Sum_probs=56.8
Q ss_pred ecCceEEEEecCC-----------CCHHHHHHHHHhhcC----CcEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhC
Q 029397 37 VGGLTRVLSVERS-----------ISFAELMVKLGEFCG----YSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAA 101 (194)
Q Consensus 37 vGGeTRIi~V~Rs-----------isf~eL~~kLs~l~g----~~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~ 101 (194)
.|.|.|=++++++ .+|.+|+.++.++|. ..|.|||. +|| .-||++++||||...+.+-.
T Consensus 18 ~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~~~f~l~Y~--Ded-GDlItiSsDeEL~~Al~~~~--- 91 (102)
T 2kkc_A 18 AAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPGGFQAHYR--AER-GDLVAFSSDEELTMAMSYVK--- 91 (102)
T ss_dssp CEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEE--CTT-CCEEEECSHHHHHHHHHHCC---
T ss_pred CCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccCCCcEEEEEE--CCC-CCEEEecCHHHHHHHHHhcC---
Confidence 3689999999875 489999999999984 47999999 555 66999999999999888543
Q ss_pred CCCceEEEEe
Q 029397 102 PSSKIRAILS 111 (194)
Q Consensus 102 ~s~rlRvFLF 111 (194)
..-+|||+-
T Consensus 92 -~~~lRlyVk 100 (102)
T 2kkc_A 92 -DDIFRIYIK 100 (102)
T ss_dssp -SSEEEEEEE
T ss_pred -CCeEEEEEE
Confidence 578999973
No 8
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=98.00 E-value=1.3e-05 Score=58.35 Aligned_cols=68 Identities=18% Similarity=0.202 Sum_probs=56.0
Q ss_pred ceEEEEecCCCCHHHHHHHHHhhcC--------CcEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEe
Q 029397 40 LTRVLSVERSISFAELMVKLGEFCG--------YSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILS 111 (194)
Q Consensus 40 eTRIi~V~Rsisf~eL~~kLs~l~g--------~~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLF 111 (194)
+++.|.|+.+|+|.+|..|+.+.++ ..+.|||| +|| ...|++.+||||+--++..... ..+++-+.+|
T Consensus 2 D~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYk--DEd-GD~Vti~sddDl~~A~~~~~~~-~~~~leiWv~ 77 (77)
T 1pqs_A 2 EIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQ--DED-GDFVVLGSDEDWNVAKEMLAEN-NEKFLNIRLY 77 (77)
T ss_dssp CEEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEE--ETT-TEEEECCSTTHHHHHHHHHHHH-CCCEEEEECC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEE--cCC-CCEEEEcCHHHHHHHHHHHHhh-hcCeEEEEEC
Confidence 6899999999999999999998776 34789998 555 6899999999999888876543 2577777665
No 9
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=97.94 E-value=3e-05 Score=60.72 Aligned_cols=67 Identities=13% Similarity=0.131 Sum_probs=56.0
Q ss_pred cCceEEEEecCCC-----------CHHHHHHHHHhhcC----CcEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCC
Q 029397 38 GGLTRVLSVERSI-----------SFAELMVKLGEFCG----YSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAP 102 (194)
Q Consensus 38 GGeTRIi~V~Rsi-----------sf~eL~~kLs~l~g----~~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~ 102 (194)
++|.|=++++.+. +|.+|+.++.++|. ..|.|||. +|| .-||.+++||||..-+.+-.
T Consensus 34 ~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~~~f~l~Yk--DEd-GDlItISsDeEL~~Al~~~~---- 106 (117)
T 2ktr_A 34 AREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPGGFQAHYR--AER-GDLVAFSSDEELTMAMSYVK---- 106 (117)
T ss_dssp EEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEE--CTT-CCEEEECSHHHHHHHHHHCC----
T ss_pred CCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccCCCcEEEEEE--CCC-CCEEEecCHHHHHHHHHhcC----
Confidence 4799999998653 99999999999993 47999999 555 56999999999998887633
Q ss_pred CCceEEEEe
Q 029397 103 SSKIRAILS 111 (194)
Q Consensus 103 s~rlRvFLF 111 (194)
...+|||+-
T Consensus 107 ~~~lRlyVk 115 (117)
T 2ktr_A 107 DDIFRIYIK 115 (117)
T ss_dssp SSEEEEEEE
T ss_pred CCeEEEEEE
Confidence 578999974
No 10
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=97.44 E-value=0.00027 Score=52.25 Aligned_cols=68 Identities=10% Similarity=0.173 Sum_probs=53.5
Q ss_pred eEeecCceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEE
Q 029397 34 LRYVGGLTRVLSVERSISFAELMVKLGEFCGY---SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAIL 110 (194)
Q Consensus 34 LrYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFL 110 (194)
..|. +|.+|.|+++++|++|..||++-.+. .+.|.|.=+.+ ..++ +.+||||+.++..=. .+||.++.
T Consensus 10 V~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s--~~~v-i~~d~dl~~aw~~~~----n~~LtL~C 80 (83)
T 1oey_A 10 VHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDS--NELV-PLSEDSMKDAWGQVK----NYCLTLWC 80 (83)
T ss_dssp EESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTC--SSCE-ECCTTTHHHHHTTCB----TTEEEEEE
T ss_pred EEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCC--CCee-ccChHHHHHHHHhcc----CCcEEEEE
Confidence 4566 79999999999999999999997765 56799986633 6778 999999999885422 35676664
No 11
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=97.40 E-value=0.00085 Score=50.09 Aligned_cols=68 Identities=19% Similarity=0.277 Sum_probs=53.3
Q ss_pred EeecCceEEEEecCC--CCHHHHHHHHHhhcCC---cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEE
Q 029397 35 RYVGGLTRVLSVERS--ISFAELMVKLGEFCGY---SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAI 109 (194)
Q Consensus 35 rYvGGeTRIi~V~Rs--isf~eL~~kLs~l~g~---~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvF 109 (194)
..-|+|.|=.+++|+ .+|.+|..++..++.. +|.|+|.=+. ..||.|+|||+|..-+. +- ++ -+|||
T Consensus 11 skf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D~d---GDLlpInnDdnl~~Al~-~a---~p-lLRl~ 82 (86)
T 1wmh_B 11 SKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTDAH---GDLLPLTNDDSLHRALA-SG---PP-PLRLL 82 (86)
T ss_dssp EEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEECTT---SCEEECCSHHHHHHHTT-SS---SS-CEEEE
T ss_pred eecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEECCC---CCEeeecCHHHHHHHHH-hC---CC-cEEEE
Confidence 456889999999977 8999999999998754 7999999543 45999999998876443 11 23 78888
Q ss_pred E
Q 029397 110 L 110 (194)
Q Consensus 110 L 110 (194)
+
T Consensus 83 I 83 (86)
T 1wmh_B 83 V 83 (86)
T ss_dssp E
T ss_pred E
Confidence 7
No 12
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=97.20 E-value=0.0034 Score=47.08 Aligned_cols=69 Identities=7% Similarity=0.177 Sum_probs=55.5
Q ss_pred cCceEEEEe--cCCCCHHHHHHHHHhhcCC-cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEe
Q 029397 38 GGLTRVLSV--ERSISFAELMVKLGEFCGY-SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILS 111 (194)
Q Consensus 38 GGeTRIi~V--~Rsisf~eL~~kLs~l~g~-~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLF 111 (194)
.||++.+-| .|.++|.||.+.+...||. ++.|||. +|| +-.|+|+|+++++.++.=+.. .+..|+++++
T Consensus 14 ~ge~~rf~vs~~~~~tweel~~mvk~~f~L~~~~ikY~--DEe-nD~v~i~Sq~E~eEAlkva~k--~~n~L~m~v~ 85 (87)
T 2bkf_A 14 KNEIQSFLVSDPENTTWADIEAMVKVSFDLNTIQIKYL--DEE-NEEVSINSQGEYEEALKMAVK--QGNQLQMQVH 85 (87)
T ss_dssp TTEEEEEEESCGGGCCHHHHHHHHHHHHTCSSEEEEEE--CTT-SCEEEECSHHHHHHHHHHHHH--TTTEEEEEEE
T ss_pred cCCeeEEEeccCCCCCHHHHHHHHHHHcCCCceEEEEE--cCC-CCEEEEecHHHHHHHHHHhcc--CCCEEEEEEe
Confidence 567777555 5699999999999999997 7999997 666 779999999998888875544 2566777765
No 13
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=96.91 E-value=0.003 Score=49.05 Aligned_cols=68 Identities=22% Similarity=0.315 Sum_probs=55.4
Q ss_pred cCceEEEEecCCC----CHHHHHHHHHhhcCC-cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEeC
Q 029397 38 GGLTRVLSVERSI----SFAELMVKLGEFCGY-SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSP 112 (194)
Q Consensus 38 GGeTRIi~V~Rsi----sf~eL~~kLs~l~g~-~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLFp 112 (194)
|-.+|=|.|..++ +|.||+..+...+.. ++.|+|+=+.+| ||.+.+||||.-||.+-..+ +++.| +||
T Consensus 17 ~~~irdI~veedl~~~P~ykdLl~lmr~~F~~~DIaLNYrD~eGD---LIrilddeDv~lmi~~sr~~--~s~k~--~FP 89 (107)
T 1oey_J 17 ISTIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGD---LVRLLSDEDVALMVRQARGL--PSQKR--LFP 89 (107)
T ss_dssp EEEEEEEEECSCTTCCCCHHHHHHHHHHHHCCSSEEEEEECTTSC---EEECCSHHHHHHHHHHCCCC--CCTTC--BCS
T ss_pred CceeeeEEEccccccCCCHHHHHHHHHHHhcccceeeeeecCCCC---EEEEcchHHHHHHHHHhhcC--ccccc--ccc
Confidence 5567889998886 599999999998876 899999977666 99999999999999987543 44444 555
No 14
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=96.79 E-value=0.0039 Score=47.96 Aligned_cols=71 Identities=7% Similarity=0.170 Sum_probs=57.3
Q ss_pred ecCceEEEEe--cCCCCHHHHHHHHHhhcCC-cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEeC
Q 029397 37 VGGLTRVLSV--ERSISFAELMVKLGEFCGY-SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSP 112 (194)
Q Consensus 37 vGGeTRIi~V--~Rsisf~eL~~kLs~l~g~-~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLFp 112 (194)
-.||++.+-| .|.++|.||.+.+...||. ++.|||. +|| +-.|+|+++++++.++.=+.+- +..|+++++-
T Consensus 21 f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~~~~IkY~--DEe-nD~V~i~Sq~E~eEAlkva~k~--~n~L~m~V~~ 94 (101)
T 1wj6_A 21 FKNEIQSFLVSDPENTTWADIEAMVKVSFDLNTIQIKYL--DEE-NEEVSINSQGEYEEALKMAVKQ--GNQLQMQVHE 94 (101)
T ss_dssp ETTEEEEEEESCTTTSCHHHHHHHHHHHHCCSSBCCEEE--CTT-SCEECCCSHHHHHHHHHHHHHH--TSEEEEECCB
T ss_pred EcCCeeEEEecCCCCCCHHHHHHHHHHHcCCCceEEEEe--cCC-CCEEEEecHHHHHHHHHHhccC--CCEEEEEEee
Confidence 3567777555 5699999999999999997 7899997 666 7799999999988888755442 5678888865
No 15
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=96.06 E-value=0.019 Score=42.94 Aligned_cols=57 Identities=19% Similarity=0.245 Sum_probs=44.2
Q ss_pred ecCceEEEEecCCCCHHHHHHHHHhhcCC-cEEEEeecCCCCCCcEEeecChhHHHHHHHH
Q 029397 37 VGGLTRVLSVERSISFAELMVKLGEFCGY-SVTLRCQLPNGDLETLISIKSDDDLANLIEE 96 (194)
Q Consensus 37 vGGeTRIi~V~Rsisf~eL~~kLs~l~g~-~v~lKYQLP~edLDaLISVssDeDL~nM~eE 96 (194)
--+|--+|.||.+|+|++|..||.+-... ++.+.+-. +|..-. .+.+|+||..-|+.
T Consensus 19 y~DDIiAIrvP~di~~~~L~dKi~~RLk~~~~~l~~yk-de~~g~--~i~sD~dl~~aiqr 76 (85)
T 1ip9_A 19 YKDDIFALMLKGDTTYKELRSKIAPRIDTDNFKLQTKL-FDGSGE--EIKTDSQVSNIIQA 76 (85)
T ss_dssp BTTCCEEEEECSCCCHHHHHHHHHHHHTSSCEEEEECC-SSSCCS--CCCSHHHHHHHHHT
T ss_pred ecCcEEEEECCCCCCHHHHHHHHHHHhcccceEEEEec-CCCCCC--cccCHHHHHHHHHh
Confidence 33688899999999999999999987654 55443333 555555 99999999998875
No 16
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=91.58 E-value=0.3 Score=37.63 Aligned_cols=50 Identities=14% Similarity=0.382 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHhhcCCc--EEEEeecCCCCCCcEEeecChhHHHHHHHHHhhh
Q 029397 48 RSISFAELMVKLGEFCGYS--VTLRCQLPNGDLETLISIKSDDDLANLIEEYDRA 100 (194)
Q Consensus 48 Rsisf~eL~~kLs~l~g~~--v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~ 100 (194)
..++|.|+..-+....... -.|.|. +|| ..=|+|.+||+|+.|+..|...
T Consensus 35 ~~L~FrDvL~~I~~vmP~aT~TAFeYE--DE~-gDRITVRSDeE~kAMlsyy~~~ 86 (106)
T 2npt_A 35 PQLLFRDVLDVIGQVLPEATTTAFEYE--DED-GDRITVRSDEEMKAMLSYYYST 86 (106)
T ss_dssp -CCCHHHHHHHHHHHSTTSCCSEEEEE--CTT-SCEEEECSHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhCccceeeeeeec--ccc-CCeeEEcchHHHHHHHHHHHHH
Confidence 6799999999999988652 347776 565 4469999999999999988643
No 17
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=91.54 E-value=0.081 Score=38.67 Aligned_cols=71 Identities=18% Similarity=0.169 Sum_probs=44.0
Q ss_pred eEeecCceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEE
Q 029397 34 LRYVGGLTRVLSVERSISFAELMVKLGEFCGYS---VTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAIL 110 (194)
Q Consensus 34 LrYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFL 110 (194)
++..+|.+..|.|+.+.+..+|+.++.+..|.+ ..|-|. |..| .|+ .-+.+|. +.....|-+.+
T Consensus 6 Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~--Gk~L-------~D~---~tL~~~~-i~~g~~i~lv~ 72 (106)
T 3m62_B 6 FKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYS--GKVL-------QDS---KTVSECG-LKDGDQVVFMV 72 (106)
T ss_dssp EECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEET--TEEC-------CTT---SBTTTTT-CCTTCEEEEEC
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC--CEEC-------CCc---CCHHHcC-CCCCCEEEEEE
Confidence 345678899999999999999999999998863 445553 3222 121 2344553 23356777777
Q ss_pred eCCCCCC
Q 029397 111 SPPASLK 117 (194)
Q Consensus 111 Fp~~~~~ 117 (194)
-.+++.+
T Consensus 73 ~~~~~~~ 79 (106)
T 3m62_B 73 SQKKSTK 79 (106)
T ss_dssp CC-----
T ss_pred cCCCCCC
Confidence 6655443
No 18
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=79.72 E-value=4.9 Score=27.91 Aligned_cols=34 Identities=9% Similarity=-0.106 Sum_probs=26.5
Q ss_pred cCceEEEEecCCCCHHHHHHHHHhhcCCcEEEEe
Q 029397 38 GGLTRVLSVERSISFAELMVKLGEFCGYSVTLRC 71 (194)
Q Consensus 38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~~v~lKY 71 (194)
.|.+..|.|+.+.+..+|+.++.+.......|-|
T Consensus 16 ~g~~~~~~v~~~~TV~~LK~~i~~~~~~~qrLi~ 49 (95)
T 1wia_A 16 NDTEELAVARPEDTVGTLKSKYFPGQESQMKLIY 49 (95)
T ss_dssp TTEEEEEEECSSSBHHHHHHHHSSSTTTTCEEEE
T ss_pred CCCEEEEEECCCCcHHHHHHHHHhhCcCcEEEEE
Confidence 4666788999999999999999987623455555
No 19
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=78.30 E-value=4.3 Score=26.15 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=30.4
Q ss_pred EeecCceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEe
Q 029397 35 RYVGGLTRVLSVERSISFAELMVKLGEFCGY---SVTLRC 71 (194)
Q Consensus 35 rYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKY 71 (194)
+..+|++..+.|+.+.+..+|+.++++..|. ...|-|
T Consensus 6 k~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 3a9j_A 6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (76)
T ss_dssp EETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 4456788889999999999999999999887 345666
No 20
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=76.29 E-value=2.3 Score=29.50 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=32.0
Q ss_pred eEeecCceEEEE-ecCCCCHHHHHHHHHhhcCC---cEEEEeecCCCCC
Q 029397 34 LRYVGGLTRVLS-VERSISFAELMVKLGEFCGY---SVTLRCQLPNGDL 78 (194)
Q Consensus 34 LrYvGGeTRIi~-V~Rsisf~eL~~kLs~l~g~---~v~lKYQLP~edL 78 (194)
++..+|. ++|. |+.+.+..||+.++++..|. ...|.|--|+..|
T Consensus 5 vr~~~G~-~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l 52 (86)
T 2kzr_A 5 CKAKGGT-HLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECL 52 (86)
T ss_dssp EEETTEE-EEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCC
T ss_pred EEcCCCC-EEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCccc
Confidence 4556774 4567 88889999999999988776 3567776666544
No 21
>1hbw_A Regulatory protein GAL4; transcriptional activator, galactose and melibiose metabolism, dimerization domain, coiled-coil dimeric; NMR {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=75.64 E-value=0.46 Score=33.22 Aligned_cols=29 Identities=21% Similarity=0.415 Sum_probs=26.2
Q ss_pred EEeecCCCCCCcEEeecChhHHHHHHHHH
Q 029397 69 LRCQLPNGDLETLISIKSDDDLANLIEEY 97 (194)
Q Consensus 69 lKYQLP~edLDaLISVssDeDL~nM~eEY 97 (194)
|+|-+|++|+|.|+--.++++|+.|+.-+
T Consensus 19 l~~lfP~~d~D~ll~~~~l~~ir~~L~~~ 47 (57)
T 1hbw_A 19 FLLIFPREDLDMILKMDSLRDIEALLTGL 47 (57)
T ss_dssp CSSSSSSSCCCHHHHHHSSHHHHHHHHHH
T ss_pred HHHHCCcccHHHHHcCCChHHHHHHHHHH
Confidence 67889999999999999999999999754
No 22
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=73.92 E-value=7.4 Score=25.31 Aligned_cols=35 Identities=11% Similarity=0.082 Sum_probs=28.6
Q ss_pred cCceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEee
Q 029397 38 GGLTRVLSVERSISFAELMVKLGEFCGYS---VTLRCQ 72 (194)
Q Consensus 38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKYQ 72 (194)
+|.+.-+.|+.+.+..+|+.++++..|.+ ..|-|.
T Consensus 12 ~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~ 49 (77)
T 2bwf_A 12 GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYS 49 (77)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 56777889999999999999999998873 455553
No 23
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=72.34 E-value=7.5 Score=24.94 Aligned_cols=36 Identities=14% Similarity=0.116 Sum_probs=29.5
Q ss_pred eecCceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEe
Q 029397 36 YVGGLTRVLSVERSISFAELMVKLGEFCGY---SVTLRC 71 (194)
Q Consensus 36 YvGGeTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKY 71 (194)
..+|.+..+.|+.+.+..+|+.++++..|. ...|-|
T Consensus 7 ~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 1ndd_A 7 TLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (76)
T ss_dssp CTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 345778889999999999999999999886 345555
No 24
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.19 E-value=8.7 Score=25.21 Aligned_cols=34 Identities=18% Similarity=0.034 Sum_probs=27.9
Q ss_pred cCceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEe
Q 029397 38 GGLTRVLSVERSISFAELMVKLGEFCGY---SVTLRC 71 (194)
Q Consensus 38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKY 71 (194)
+|++..+.|+.+.+..+|+.++++..|. ...|-|
T Consensus 16 ~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 52 (81)
T 2dzi_A 16 QGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF 52 (81)
T ss_dssp TSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 4667788999999999999999999876 345555
No 25
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=69.97 E-value=10 Score=25.73 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=43.0
Q ss_pred EeecCceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEe
Q 029397 35 RYVGGLTRVLSVERSISFAELMVKLGEFCGYS---VTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILS 111 (194)
Q Consensus 35 rYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLF 111 (194)
+..+|.+..|.|+.+.+..+|+.++.+..|.+ ..|-|. |..| .| ...+.+|.- ....|.+++-
T Consensus 11 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~--Gk~L-------~d---~~tL~~~~i--~g~~i~l~~~ 76 (90)
T 4dwf_A 11 KTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ--GRVL-------QD---DKKLQEYNV--GGKVIHLVER 76 (90)
T ss_dssp EETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET--TEEC-------CT---TSBGGGGTC--TTEEEEEEEC
T ss_pred EcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC--CeEC-------CC---CCCHHHcCC--CCcEEEEEec
Confidence 45578889999999999999999999998873 456553 2222 12 123455653 3566766665
Q ss_pred C
Q 029397 112 P 112 (194)
Q Consensus 112 p 112 (194)
+
T Consensus 77 ~ 77 (90)
T 4dwf_A 77 A 77 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 26
>3ce8_A Putative PII-like nitrogen regulatory protein; structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE; 2.40A {Shewanella baltica}
Probab=69.44 E-value=4.7 Score=31.08 Aligned_cols=95 Identities=12% Similarity=0.031 Sum_probs=55.4
Q ss_pred eeeCCCCCCeEeecCce--EEEEecCCCCHHHHHHHHHhhcCC---cEE-EE-eecCC------C-----CCC-cEEeec
Q 029397 25 ILPRSMDGQLRYVGGLT--RVLSVERSISFAELMVKLGEFCGY---SVT-LR-CQLPN------G-----DLE-TLISIK 85 (194)
Q Consensus 25 I~PRp~Dg~LrYvGGeT--RIi~V~Rsisf~eL~~kLs~l~g~---~v~-lK-YQLP~------e-----dLD-aLISVs 85 (194)
|.--.+--.|.|-|-.+ .|.++=|...+.+++..|.++-|. +++ ++ |=-.. | +-. .|--|.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~lI~aIIrP~kld~V~daL~~~~gi~G~TvseV~G~Grqkg~~S~~E~yrG~epKvkiEivv 85 (120)
T 3ce8_A 6 IHHHHHHENLYFQGMSTEQLLVLIAQNDIKDDIVDTLIELEFLSGFSLGNICGFSREHSHFNIKEQVEGYREFCKFEIMH 85 (120)
T ss_dssp --------------CCSEEEEEEEEEGGGHHHHHHHHTTCTTCCCCEEEEEEEEECC-----------EEEEEEEEEEEE
T ss_pred ccccccccceeecCCccceEEEEEeCHHHHHHHHHHHHhCCCCCcEEEEeeEEeCCCCCCCCceeEEecCCceEEEEEEE
Confidence 33333445677777655 467888999999999999997332 222 11 11111 1 112 333456
Q ss_pred ChhHHHHHHHHHhhhCCCCceEEEEeCCCCCCCc
Q 029397 86 SDDDLANLIEEYDRAAPSSKIRAILSPPASLKKV 119 (194)
Q Consensus 86 sDeDL~nM~eEYdr~~~s~rlRvFLFp~~~~~~~ 119 (194)
+||+++.+++.-.+..+.+++++|+.|....-++
T Consensus 86 ~d~~ve~vv~aI~~~a~tg~IKIfV~pVe~~vRI 119 (120)
T 3ce8_A 86 PAAQQAALLTALALVCKHNPCRYWIMPIYQNGTL 119 (120)
T ss_dssp EGGGHHHHHHHHHHHTTTSCCEEEEEECSCCCCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEEEEEhHHeEEe
Confidence 7899999999988888889999999998766554
No 27
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=69.22 E-value=8.8 Score=25.31 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=29.8
Q ss_pred EeecCceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEe
Q 029397 35 RYVGGLTRVLSVERSISFAELMVKLGEFCGYS---VTLRC 71 (194)
Q Consensus 35 rYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKY 71 (194)
+...|++..|.|+.+.+..+|+.++++..+.+ ..|-|
T Consensus 9 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~ 48 (85)
T 3mtn_B 9 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 48 (85)
T ss_dssp ECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEE
Confidence 33467888899999999999999999998863 44555
No 28
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=68.10 E-value=11 Score=26.25 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=30.6
Q ss_pred EeecCceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEe
Q 029397 35 RYVGGLTRVLSVERSISFAELMVKLGEFCGY---SVTLRC 71 (194)
Q Consensus 35 rYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKY 71 (194)
+..+|++..+.|+.+.+..+|+.++++..|. ...|-|
T Consensus 6 k~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~ 45 (98)
T 1yx5_B 6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (98)
T ss_dssp EETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred EeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 4456788889999999999999999999887 355666
No 29
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=67.92 E-value=29 Score=24.54 Aligned_cols=31 Identities=13% Similarity=0.122 Sum_probs=25.3
Q ss_pred EEEEecCCCCHHHHHHHHHhhcCC---cEEEEee
Q 029397 42 RVLSVERSISFAELMVKLGEFCGY---SVTLRCQ 72 (194)
Q Consensus 42 RIi~V~Rsisf~eL~~kLs~l~g~---~v~lKYQ 72 (194)
..|.|+.+.+..+|+.++++..|. ...|-|.
T Consensus 29 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 62 (106)
T 1wx7_A 29 EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA 62 (106)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEET
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 368999999999999999999886 3556553
No 30
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=67.90 E-value=11 Score=24.80 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=30.4
Q ss_pred EeecCceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEe
Q 029397 35 RYVGGLTRVLSVERSISFAELMVKLGEFCGYS---VTLRC 71 (194)
Q Consensus 35 rYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKY 71 (194)
+..+|.+..+.|+.+.+..+|+.++++..|.+ ..|-|
T Consensus 10 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 49 (79)
T 3phx_B 10 RNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 49 (79)
T ss_dssp ECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEE
Confidence 44577888899999999999999999998873 44555
No 31
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=67.27 E-value=11 Score=25.18 Aligned_cols=34 Identities=12% Similarity=0.128 Sum_probs=28.2
Q ss_pred cCceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEe
Q 029397 38 GGLTRVLSVERSISFAELMVKLGEFCGY---SVTLRC 71 (194)
Q Consensus 38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKY 71 (194)
.|.+..+.|+.+.+..+|+.++++..|. ...|-|
T Consensus 16 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~ 52 (87)
T 1wh3_A 16 DGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEF 52 (87)
T ss_dssp TTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE
T ss_pred CCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEE
Confidence 4677789999999999999999999876 345555
No 32
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=66.87 E-value=10 Score=25.12 Aligned_cols=37 Identities=24% Similarity=0.235 Sum_probs=30.3
Q ss_pred EeecCceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEe
Q 029397 35 RYVGGLTRVLSVERSISFAELMVKLGEFCGY---SVTLRC 71 (194)
Q Consensus 35 rYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKY 71 (194)
+...|++..+.|+.+.+..+|+.++++..+. ...|-|
T Consensus 9 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~ 48 (85)
T 3n3k_B 9 KTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 48 (85)
T ss_dssp ECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE
Confidence 3456788889999999999999999999886 345655
No 33
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=64.90 E-value=14 Score=25.35 Aligned_cols=67 Identities=21% Similarity=0.289 Sum_probs=43.6
Q ss_pred eEeecCceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEE
Q 029397 34 LRYVGGLTRVLSVERSISFAELMVKLGEFCGYS---VTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAIL 110 (194)
Q Consensus 34 LrYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFL 110 (194)
++...|.+.-|.|+.+.+..+|+.++++..|.+ ..|-|. |..| .|+ ..+.+|. +.....|.+.+
T Consensus 6 vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~--G~~L-------~d~---~tL~~~~-i~~~~~i~l~~ 72 (96)
T 3k9o_B 6 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA--GKQL-------EDG---RTLSDYN-IQKESTLHLVL 72 (96)
T ss_dssp EEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET--TEEC-------CTT---SBTGGGT-CCTTCEEEEEE
T ss_pred EEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEEC--CEEC-------CCC---CcHHHcC-CCCCCEEEEEE
Confidence 345578888999999999999999999998873 445552 2222 122 1345564 23356677766
Q ss_pred eCC
Q 029397 111 SPP 113 (194)
Q Consensus 111 Fp~ 113 (194)
-..
T Consensus 73 r~~ 75 (96)
T 3k9o_B 73 RLR 75 (96)
T ss_dssp CCC
T ss_pred EcC
Confidence 543
No 34
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=64.86 E-value=13 Score=25.04 Aligned_cols=38 Identities=13% Similarity=0.168 Sum_probs=31.4
Q ss_pred eEeecCceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEe
Q 029397 34 LRYVGGLTRVLSVERSISFAELMVKLGEFCGYS---VTLRC 71 (194)
Q Consensus 34 LrYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKY 71 (194)
++..+|.+..+.|+.+.+..+|+.++++..|.+ ..|-|
T Consensus 22 Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~ 62 (88)
T 4eew_A 22 VKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 62 (88)
T ss_dssp EEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 456678888999999999999999999998863 34555
No 35
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=64.71 E-value=11 Score=25.78 Aligned_cols=63 Identities=22% Similarity=0.220 Sum_probs=40.5
Q ss_pred ecCceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEeC
Q 029397 37 VGGLTRVLSVERSISFAELMVKLGEFCGYS---VTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSP 112 (194)
Q Consensus 37 vGGeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLFp 112 (194)
..|.+..+.|+.+.+..+|+.++++..|.+ ..|-|. |..|+ |+ .-+++|.- .....|.+.+-+
T Consensus 12 ~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~--Gk~L~-------D~---~tL~~~~I-~~g~~i~l~~~~ 77 (88)
T 2hj8_A 12 NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE--GKPLE-------DQ---LPLGEYGL-KPLSTVFMNLRL 77 (88)
T ss_dssp TTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESS--SSCCC-------TT---SBHHHHHC-STTCEEEEEEC-
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC--CEECC-------CC---CcHHHcCC-CCCCEEEEEEEc
Confidence 346777899999999999999999998863 445553 43321 22 23566742 234566655543
No 36
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=61.54 E-value=13 Score=25.61 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=28.7
Q ss_pred ecCceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEe
Q 029397 37 VGGLTRVLSVERSISFAELMVKLGEFCGY---SVTLRC 71 (194)
Q Consensus 37 vGGeTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKY 71 (194)
.+|++..|.|+.+.+..+|+.++++..|. ...|-|
T Consensus 19 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 56 (85)
T 2kd0_A 19 FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIF 56 (85)
T ss_dssp ETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEE
T ss_pred ECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE
Confidence 46777789999999999999999999876 344555
No 37
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=60.59 E-value=14 Score=25.39 Aligned_cols=36 Identities=22% Similarity=0.194 Sum_probs=29.6
Q ss_pred eecCceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEe
Q 029397 36 YVGGLTRVLSVERSISFAELMVKLGEFCGYS---VTLRC 71 (194)
Q Consensus 36 YvGGeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKY 71 (194)
-.+|.+.-|.|+.+.+..+|+.++.+..|.+ ..|-|
T Consensus 24 ~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 62 (91)
T 3v6c_B 24 TLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 62 (91)
T ss_dssp CTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred eCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEE
Confidence 3467788899999999999999999998873 45555
No 38
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=60.41 E-value=14 Score=25.96 Aligned_cols=38 Identities=24% Similarity=0.235 Sum_probs=30.8
Q ss_pred eEeecCceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEe
Q 029397 34 LRYVGGLTRVLSVERSISFAELMVKLGEFCGYS---VTLRC 71 (194)
Q Consensus 34 LrYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKY 71 (194)
++..+|++..|.|+.+.+..+|+.++++..|.+ ..|-|
T Consensus 27 Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 67 (98)
T 4hcn_B 27 VKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 67 (98)
T ss_dssp EEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE
Confidence 345578888899999999999999999998863 34555
No 39
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=59.77 E-value=13 Score=30.21 Aligned_cols=51 Identities=24% Similarity=0.191 Sum_probs=42.2
Q ss_pred EEEEeeeCCEeeeCCCCC-----CeEeecCceEEEEecCCCCHHHHHHHHHhhcCCc
Q 029397 15 LKFLCSYGGKILPRSMDG-----QLRYVGGLTRVLSVERSISFAELMVKLGEFCGYS 66 (194)
Q Consensus 15 VKlmCSyGG~I~PRp~Dg-----~LrYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~~ 66 (194)
-++++|-.|.+..- .|. .++-..|.+..|.|+.+.+..+|+.++++..|.+
T Consensus 87 ~r~~~s~dg~~y~T-~d~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp 142 (189)
T 3q3f_A 87 DRILYSSDWLIYKT-TDHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 142 (189)
T ss_dssp CEEEEETTCCEEEE-SCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred cceEecCCCcEEEc-ccccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCC
Confidence 38899999988863 554 2456689999999999999999999999998863
No 40
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=59.64 E-value=13 Score=24.79 Aligned_cols=32 Identities=13% Similarity=0.167 Sum_probs=27.3
Q ss_pred EeecCceEEEEecCCCCHHHHHHHHHhhcCCc
Q 029397 35 RYVGGLTRVLSVERSISFAELMVKLGEFCGYS 66 (194)
Q Consensus 35 rYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~~ 66 (194)
+..+|.+.-|.|+.+.+..+|+.++++..|.+
T Consensus 18 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip 49 (88)
T 3dbh_I 18 KTLTGKEIEIDIEPTDKVERIKERVEEKEGIP 49 (88)
T ss_dssp ECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred EcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC
Confidence 34467788899999999999999999998863
No 41
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=59.33 E-value=25 Score=24.61 Aligned_cols=35 Identities=9% Similarity=0.022 Sum_probs=29.1
Q ss_pred cCceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEee
Q 029397 38 GGLTRVLSVERSISFAELMVKLGEFCGY---SVTLRCQ 72 (194)
Q Consensus 38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKYQ 72 (194)
+|+..-+.++.+++..+|+.+|++++|. ...|-|.
T Consensus 21 ~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~ 58 (97)
T 1wjn_A 21 ERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYE 58 (97)
T ss_dssp SSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEE
Confidence 4566668899999999999999999987 4567776
No 42
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=58.94 E-value=20 Score=24.76 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=31.1
Q ss_pred EeecCceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEee
Q 029397 35 RYVGGLTRVLSVERSISFAELMVKLGEFCGYS---VTLRCQ 72 (194)
Q Consensus 35 rYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKYQ 72 (194)
+...|++.-|.|+.+.+..+|+.++++..|.+ ..|-|.
T Consensus 16 k~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 56 (84)
T 2kk8_A 16 ENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVD 56 (84)
T ss_dssp EETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred EecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC
Confidence 45678889999999999999999999999873 445553
No 43
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=58.82 E-value=6.6 Score=27.77 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=24.0
Q ss_pred CceEEEEecCCCCHHHHHHHHHhhcCCc
Q 029397 39 GLTRVLSVERSISFAELMVKLGEFCGYS 66 (194)
Q Consensus 39 GeTRIi~V~Rsisf~eL~~kLs~l~g~~ 66 (194)
|.+..|.|+.+.+..+|+.+|++..|.+
T Consensus 26 g~~~~i~v~~~~TV~~LK~~I~~~tgip 53 (95)
T 1v86_A 26 KTKHDVKVPLDSTGSELKQKIHSITGLP 53 (95)
T ss_dssp TEEEEEEECTTSBHHHHHHHHHHHHCSC
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 3455689999999999999999999864
No 44
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=58.66 E-value=17 Score=24.92 Aligned_cols=37 Identities=22% Similarity=0.208 Sum_probs=30.6
Q ss_pred EeecCceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEe
Q 029397 35 RYVGGLTRVLSVERSISFAELMVKLGEFCGYS---VTLRC 71 (194)
Q Consensus 35 rYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKY 71 (194)
+-.+|++..+.|+.+.+..+|+.++++..|.+ ..|-|
T Consensus 15 ~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 54 (88)
T 1sif_A 15 KTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIF 54 (88)
T ss_dssp EETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEE
Confidence 44578888999999999999999999998863 45555
No 45
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=55.42 E-value=21 Score=24.44 Aligned_cols=37 Identities=14% Similarity=0.139 Sum_probs=30.1
Q ss_pred EeecCceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEe
Q 029397 35 RYVGGLTRVLSVERSISFAELMVKLGEFCGYS---VTLRC 71 (194)
Q Consensus 35 rYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKY 71 (194)
+-..|.+..|.|+.+.+..+|+.++++..|.+ ..|-|
T Consensus 6 k~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 45 (88)
T 4fbj_B 6 KTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (88)
T ss_dssp EETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEE
Confidence 34568888999999999999999999998863 34555
No 46
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=54.98 E-value=4.1 Score=28.57 Aligned_cols=39 Identities=13% Similarity=0.272 Sum_probs=29.0
Q ss_pred eecCceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEeecCC
Q 029397 36 YVGGLTRVLSVERSISFAELMVKLGEFCGY---SVTLRCQLPN 75 (194)
Q Consensus 36 YvGGeTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKYQLP~ 75 (194)
--.|-.|| .|+.+.+|.+|..++.+.++. ..+|++..|.
T Consensus 11 s~~G~~Ri-~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p 52 (80)
T 2pjh_A 11 SPDGVKRI-TATKRETAATFLKKVAKEFGFQNNGFSVYINRNK 52 (80)
T ss_dssp CSSEEEEC-CCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCG
T ss_pred CCCCCEEE-EcCCcChHHHHHHHHHHHcCCCCCcceEEecCCC
Confidence 34565554 599999999999999998875 3456666664
No 47
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=54.73 E-value=28 Score=23.37 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=27.2
Q ss_pred cC-ceEEE-EecCCCCHHHHHHHHHhhcCC---cEEEEe
Q 029397 38 GG-LTRVL-SVERSISFAELMVKLGEFCGY---SVTLRC 71 (194)
Q Consensus 38 GG-eTRIi-~V~Rsisf~eL~~kLs~l~g~---~v~lKY 71 (194)
.| ++..| .|+.+.+..+|+.++++..|. ...|-|
T Consensus 16 ~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 54 (89)
T 1wy8_A 16 DGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFY 54 (89)
T ss_dssp TCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEE
T ss_pred CCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 35 56778 599999999999999999886 345555
No 48
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=54.09 E-value=27 Score=22.92 Aligned_cols=35 Identities=9% Similarity=0.024 Sum_probs=29.0
Q ss_pred ecCceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEe
Q 029397 37 VGGLTRVLSVERSISFAELMVKLGEFCGYS---VTLRC 71 (194)
Q Consensus 37 vGGeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKY 71 (194)
..|.+..+.|+.+.++.+|+.++++..|.+ ..|-|
T Consensus 11 ~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~ 48 (79)
T 2uyz_B 11 QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 48 (79)
T ss_dssp TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE
Confidence 457778899999999999999999988873 45555
No 49
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=53.12 E-value=26 Score=25.14 Aligned_cols=35 Identities=26% Similarity=0.235 Sum_probs=28.8
Q ss_pred ecCceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEe
Q 029397 37 VGGLTRVLSVERSISFAELMVKLGEFCGY---SVTLRC 71 (194)
Q Consensus 37 vGGeTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKY 71 (194)
..|.+..+.|+.+.+..+|+.++++..|. ...|-|
T Consensus 43 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 80 (111)
T 2ojr_A 43 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 80 (111)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEE
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEE
Confidence 35777889999999999999999998876 345655
No 50
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=51.93 E-value=34 Score=22.57 Aligned_cols=38 Identities=13% Similarity=0.045 Sum_probs=29.1
Q ss_pred EeecCceEEEEecCCCCHHHHHHHHHhh---cCC---cEEEEee
Q 029397 35 RYVGGLTRVLSVERSISFAELMVKLGEF---CGY---SVTLRCQ 72 (194)
Q Consensus 35 rYvGGeTRIi~V~Rsisf~eL~~kLs~l---~g~---~v~lKYQ 72 (194)
+..+|.+..+.|+.+.+..+|+.++++. .|. ...|-|.
T Consensus 11 k~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~ 54 (85)
T 2wyq_A 11 KTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA 54 (85)
T ss_dssp EETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEET
T ss_pred EECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEEC
Confidence 3446778889999999999999999997 444 3456553
No 51
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=51.83 E-value=25 Score=25.65 Aligned_cols=39 Identities=23% Similarity=0.198 Sum_probs=32.7
Q ss_pred eEeecCceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEee
Q 029397 34 LRYVGGLTRVLSVERSISFAELMVKLGEFCGY---SVTLRCQ 72 (194)
Q Consensus 34 LrYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKYQ 72 (194)
.+-..|.+..+.|+.+.+..+|+.++++..|. ...|-|.
T Consensus 14 vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 55 (114)
T 2kdi_A 14 AKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWA 55 (114)
T ss_dssp EEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC
Confidence 46678999999999999999999999999887 3456553
No 52
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=51.23 E-value=13 Score=25.85 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=24.5
Q ss_pred cCceEEE-EecCCCCHHHHHHHHHhhcCC
Q 029397 38 GGLTRVL-SVERSISFAELMVKLGEFCGY 65 (194)
Q Consensus 38 GGeTRIi-~V~Rsisf~eL~~kLs~l~g~ 65 (194)
+|.+..| .|+.+.+..+|+.++++..|.
T Consensus 15 ~g~~~~i~~v~~~~TV~~lK~~I~~~~gi 43 (90)
T 1v5t_A 15 GGQEYSVTTLSEDDTVLDLKQFLKTLTGV 43 (90)
T ss_dssp TTEEEEECSCCSSSBHHHHHHHHHHHTCC
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHHCc
Confidence 5566668 899999999999999999986
No 53
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=50.81 E-value=21 Score=25.42 Aligned_cols=61 Identities=18% Similarity=0.128 Sum_probs=40.5
Q ss_pred cCceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEe
Q 029397 38 GGLTRVLSVERSISFAELMVKLGEFCGYS---VTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILS 111 (194)
Q Consensus 38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLF 111 (194)
+|.+..+.|+.+.+..+|+.++++..|.+ ..|-|. |..| .|+ ..+.+|.- .....|.+.+-
T Consensus 32 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~--Gk~L-------~D~---~tL~~ygI-~~g~ti~lv~~ 95 (106)
T 1ttn_A 32 TGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFS--GRPL-------TDK---MKFEELKI-PKDYVVQVIVS 95 (106)
T ss_dssp TTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEET--TEEC-------CTT---SHHHHCCC-SSSCEEEEECC
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEEC--CEEC-------CCC---CcHHHcCC-CCCCEEEEEEe
Confidence 56777799999999999999999998863 455553 3221 122 35677752 23556666553
No 54
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=50.60 E-value=32 Score=23.54 Aligned_cols=34 Identities=18% Similarity=0.089 Sum_probs=25.9
Q ss_pred CceEEEEecCC-----CCHHHHHHHHHhhcCC---cEEEEee
Q 029397 39 GLTRVLSVERS-----ISFAELMVKLGEFCGY---SVTLRCQ 72 (194)
Q Consensus 39 GeTRIi~V~Rs-----isf~eL~~kLs~l~g~---~v~lKYQ 72 (194)
|.+..|.|+.+ .+..+|+.++++..|. ...|-|.
T Consensus 16 ~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~ 57 (92)
T 1wxv_A 16 NEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFK 57 (92)
T ss_dssp SSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEET
T ss_pred CEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 34556789885 9999999999999886 3455553
No 55
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=50.35 E-value=29 Score=25.08 Aligned_cols=36 Identities=25% Similarity=0.213 Sum_probs=29.2
Q ss_pred eecCceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEe
Q 029397 36 YVGGLTRVLSVERSISFAELMVKLGEFCGYS---VTLRC 71 (194)
Q Consensus 36 YvGGeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKY 71 (194)
...|.+..|.|+.+.+..+|+.++++..|.+ ..|-|
T Consensus 42 ~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 80 (111)
T 3vdz_A 42 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 80 (111)
T ss_dssp CSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred eCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEE
Confidence 3457778899999999999999999998873 44555
No 56
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=50.34 E-value=21 Score=25.24 Aligned_cols=28 Identities=11% Similarity=0.010 Sum_probs=24.0
Q ss_pred cCceE-EEEecCCCCHHHHHHHHHhhcCC
Q 029397 38 GGLTR-VLSVERSISFAELMVKLGEFCGY 65 (194)
Q Consensus 38 GGeTR-Ii~V~Rsisf~eL~~kLs~l~g~ 65 (194)
+|++. -|.|+.+.+..+|+.++++..|.
T Consensus 15 ~g~~~~~l~v~~~~TV~~lK~~I~~~tgi 43 (96)
T 1wgg_A 15 GKEKFEGVELNTDEPPMVFKAQLFALTGV 43 (96)
T ss_dssp TTEEEEEEEEESSSCHHHHHHHHHHHTCC
T ss_pred CCEEEEEEEECCCCcHHHHHHHHHHHHCc
Confidence 45556 48999999999999999999986
No 57
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=48.74 E-value=40 Score=29.73 Aligned_cols=75 Identities=19% Similarity=0.341 Sum_probs=52.9
Q ss_pred cCceEEEEecCCCCHHHHHHHHHhhcCC--cEEEE------eecCCCCCCcEEe------ecChhHHHHHHHHHhhhCC-
Q 029397 38 GGLTRVLSVERSISFAELMVKLGEFCGY--SVTLR------CQLPNGDLETLIS------IKSDDDLANLIEEYDRAAP- 102 (194)
Q Consensus 38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~--~v~lK------YQLP~edLDaLIS------VssDeDL~nM~eEYdr~~~- 102 (194)
-|-.+|++|+.+ ...+...++.+..|. .+++- ..|| |..|.+|| +-....|..++...+|+-.
T Consensus 104 aGA~~V~ave~s-~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp 181 (376)
T 4hc4_A 104 AGARRVYAVEAS-AIWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKE 181 (376)
T ss_dssp TTCSEEEEEECS-TTHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEE
T ss_pred hCCCEEEEEeCh-HHHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeecccccccccchhhhHHHHHHhhCCC
Confidence 366799999988 467777777776665 24432 3466 66899998 4455578888887777632
Q ss_pred -----CCceEEEEeCCC
Q 029397 103 -----SSKIRAILSPPA 114 (194)
Q Consensus 103 -----s~rlRvFLFp~~ 114 (194)
|.+..+|+.|..
T Consensus 182 ~G~~iP~~atly~apie 198 (376)
T 4hc4_A 182 GGLLLPASAELFIVPIS 198 (376)
T ss_dssp EEEEESCEEEEEEEEEC
T ss_pred CceECCccceEEEEEec
Confidence 788888888764
No 58
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=48.68 E-value=33 Score=24.01 Aligned_cols=35 Identities=9% Similarity=0.024 Sum_probs=29.1
Q ss_pred ecCceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEe
Q 029397 37 VGGLTRVLSVERSISFAELMVKLGEFCGYS---VTLRC 71 (194)
Q Consensus 37 vGGeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKY 71 (194)
..|.+..+.|..+.++.+|+.++++..|.+ ..|-|
T Consensus 29 ~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif 66 (97)
T 1wyw_B 29 QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 66 (97)
T ss_dssp TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE
Confidence 357778899999999999999999998873 45555
No 59
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=48.13 E-value=49 Score=25.08 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=25.8
Q ss_pred EeecCceEEEEecCCCCHHHHHHHHHhhcCC
Q 029397 35 RYVGGLTRVLSVERSISFAELMVKLGEFCGY 65 (194)
Q Consensus 35 rYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~ 65 (194)
+-..|.+..+.|+.+.+..+|+.++.+..|.
T Consensus 102 k~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi 132 (172)
T 3u30_A 102 KTLTGKTITLEVEPSDTIENVKAKIQDKEGI 132 (172)
T ss_dssp EESSCCEEEEEECTTCBHHHHHHHHHHHHCC
T ss_pred ecccCcceeEEecCCCCHHHHHHHHHHHhCC
Confidence 3456788888899999999999999988876
No 60
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=47.69 E-value=65 Score=23.24 Aligned_cols=81 Identities=15% Similarity=0.259 Sum_probs=52.4
Q ss_pred EEEEecCCCCHHHHHHHHHhhc--CCcEE-EEe---ecC------CCC-------CCcEEeecChhHHHHHHHHHhhhCC
Q 029397 42 RVLSVERSISFAELMVKLGEFC--GYSVT-LRC---QLP------NGD-------LETLISIKSDDDLANLIEEYDRAAP 102 (194)
Q Consensus 42 RIi~V~Rsisf~eL~~kLs~l~--g~~v~-lKY---QLP------~ed-------LDaLISVssDeDL~nM~eEYdr~~~ 102 (194)
.|+++=|...+.+++..|.+.- |..++ .+= |.- +.+ ...|.-|..||+++..++.-.+...
T Consensus 3 ~I~aII~~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~d~~v~~vv~~I~~~~~ 82 (112)
T 2eg2_A 3 KIEAIIKPFKLDEVKDALVEIGIGGMTVTEVKGFGQQKGHTEIYRGTEYVIDFLPKVKIEVVVRDEDVEKVVETIVKTAQ 82 (112)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTCCCCEEEEEEEC-----------------CCEEEEEEEEEECGGGHHHHHHHHHHHHC
T ss_pred EEEEEECHHHHHHHHHHHHHCCCCeEEEEEeEeecccCCCceeeeccccccccccEEEEEEEEcHHHHHHHHHHHHHHhc
Confidence 5788889999999999999862 11111 111 100 111 1256677789999999987766543
Q ss_pred ---CCceEEEEeCCCCCCCcCCC
Q 029397 103 ---SSKIRAILSPPASLKKVSPP 122 (194)
Q Consensus 103 ---s~rlRvFLFp~~~~~~~s~~ 122 (194)
.+-=++|+.|....-++..+
T Consensus 83 tg~~GdGkiFV~pVe~~~rirtg 105 (112)
T 2eg2_A 83 TGRVGDGKIFIIPVEDVIRIRTG 105 (112)
T ss_dssp CSSTTCCEEEEEECSCCBCTTTC
T ss_pred CCCCCCEEEEEEEhHhEEEecCC
Confidence 44459999999887766544
No 61
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=45.25 E-value=83 Score=22.60 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=24.1
Q ss_pred EeecCceEEEEecCCCCHHHHHHHHHhhcCC
Q 029397 35 RYVGGLTRVLSVERSISFAELMVKLGEFCGY 65 (194)
Q Consensus 35 rYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~ 65 (194)
+...|++..+.|+.+.+..+|+.++++..|.
T Consensus 82 k~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi 112 (152)
T 3b08_A 82 KTLTGKTITLEVEPSDTIENVKAKIQDKEGI 112 (152)
T ss_dssp EESSSCEEEEEECTTCBHHHHHHHHHHHHCC
T ss_pred eecCCCEEEEEeCCCCcHHHHHHHHHHHhCc
Confidence 3446777788888888888888888887776
No 62
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=45.06 E-value=40 Score=23.65 Aligned_cols=33 Identities=15% Similarity=0.118 Sum_probs=26.9
Q ss_pred cCceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEe
Q 029397 38 GGLTRVLSVERSISFAELMVKLGEFCGYS---VTLRC 71 (194)
Q Consensus 38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKY 71 (194)
+| +.-|.|+.+.+..+|+.++++..|.+ ..|-|
T Consensus 24 ~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 59 (94)
T 2kan_A 24 SK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYY 59 (94)
T ss_dssp SC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEE
T ss_pred Cc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 45 67789999999999999999998863 44545
No 63
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=44.97 E-value=26 Score=24.75 Aligned_cols=28 Identities=18% Similarity=0.118 Sum_probs=25.1
Q ss_pred cCceEEEEecCCCCHHHHHHHHHhhcCC
Q 029397 38 GGLTRVLSVERSISFAELMVKLGEFCGY 65 (194)
Q Consensus 38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~ 65 (194)
.|++..|.|+.+.+..+|+.++++..|.
T Consensus 20 ~~~~~~i~v~~~~TV~~LK~~I~~~~gi 47 (102)
T 1v5o_A 20 TEVTFSLQVNPDFELSNFRVLCELESGV 47 (102)
T ss_dssp CCCEEEEEECTTCBHHHHHHHHHHHTCC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHCc
Confidence 3577789999999999999999999987
No 64
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=43.48 E-value=38 Score=25.75 Aligned_cols=38 Identities=24% Similarity=0.224 Sum_probs=31.2
Q ss_pred EeecCceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEee
Q 029397 35 RYVGGLTRVLSVERSISFAELMVKLGEFCGYS---VTLRCQ 72 (194)
Q Consensus 35 rYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKYQ 72 (194)
+..+|.+..|.|+.+.+..+|+.++.+..|.+ ..|-|.
T Consensus 26 k~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~ 66 (172)
T 3u30_A 26 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 66 (172)
T ss_dssp EETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC
Confidence 44578888899999999999999999999873 356553
No 65
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=43.43 E-value=29 Score=24.09 Aligned_cols=34 Identities=9% Similarity=0.102 Sum_probs=28.1
Q ss_pred CceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEee
Q 029397 39 GLTRVLSVERSISFAELMVKLGEFCGYS---VTLRCQ 72 (194)
Q Consensus 39 GeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKYQ 72 (194)
|.+..+.|+.+.+..+|+.++++..|.+ ..|-|.
T Consensus 27 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 63 (93)
T 2l7r_A 27 QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLA 63 (93)
T ss_dssp SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEET
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEEC
Confidence 6777899999999999999999998863 455554
No 66
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=42.94 E-value=57 Score=21.16 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=26.8
Q ss_pred cCce-EEEE-ecCCCCHHHHHHHHHhhcCCc---EEEEe
Q 029397 38 GGLT-RVLS-VERSISFAELMVKLGEFCGYS---VTLRC 71 (194)
Q Consensus 38 GGeT-RIi~-V~Rsisf~eL~~kLs~l~g~~---v~lKY 71 (194)
.|.+ .-+. |+.+.+..+|+.++++..|.+ ..|-|
T Consensus 11 ~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~ 49 (78)
T 2faz_A 11 DGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFY 49 (78)
T ss_dssp TSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 4555 3688 999999999999999998863 45555
No 67
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=40.95 E-value=42 Score=24.18 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=29.9
Q ss_pred ecCceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEe
Q 029397 37 VGGLTRVLSVERSISFAELMVKLGEFCGY---SVTLRC 71 (194)
Q Consensus 37 vGGeTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKY 71 (194)
..|.+.-|.|+.+.+..+|+.++++..|. ...|-|
T Consensus 43 L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~ 80 (115)
T 1we7_A 43 LNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQY 80 (115)
T ss_dssp CSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEE
T ss_pred cCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE
Confidence 47889999999999999999999999886 345655
No 68
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=46.48 E-value=5.9 Score=25.89 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=27.2
Q ss_pred EeecCceEEEEecCCCCHHHHHHHHHhhcCCc
Q 029397 35 RYVGGLTRVLSVERSISFAELMVKLGEFCGYS 66 (194)
Q Consensus 35 rYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~~ 66 (194)
+..+|++..+.|+.+.+..+|+.++++..|.+
T Consensus 6 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~ 37 (76)
T 3b1l_X 6 RFNSSYGFPVEVDSDTSILQLKEVVAKQQGVP 37 (76)
Confidence 34567888899999999999999999988764
No 69
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=40.03 E-value=51 Score=23.30 Aligned_cols=33 Identities=9% Similarity=0.040 Sum_probs=26.7
Q ss_pred CceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEe
Q 029397 39 GLTRVLSVERSISFAELMVKLGEFCGYS---VTLRC 71 (194)
Q Consensus 39 GeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKY 71 (194)
|.+..|.|+.+.+..+|+.++++..|.+ ..|-|
T Consensus 34 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 69 (101)
T 2klc_A 34 KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIF 69 (101)
T ss_dssp SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 4456789999999999999999998873 45555
No 70
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=40.00 E-value=79 Score=26.61 Aligned_cols=62 Identities=24% Similarity=0.351 Sum_probs=45.0
Q ss_pred CceEEEEecCCCCHHHHHHHHHhhcCCc--EEEEe------ecCCCCCCcEEe------ecChhHHHHHHHHHhhhC
Q 029397 39 GLTRVLSVERSISFAELMVKLGEFCGYS--VTLRC------QLPNGDLETLIS------IKSDDDLANLIEEYDRAA 101 (194)
Q Consensus 39 GeTRIi~V~Rsisf~eL~~kLs~l~g~~--v~lKY------QLP~edLDaLIS------VssDeDL~nM~eEYdr~~ 101 (194)
|..+|+.||.+ ...+...+..+..|.. +.+.. .+|.+..|.+|+ +...+++..++++..++-
T Consensus 88 g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~L 163 (349)
T 3q7e_A 88 GARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWL 163 (349)
T ss_dssp TCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHE
T ss_pred CCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccccccccCchhHHHHHHHHHHhC
Confidence 56799999999 6777777666655542 44332 467788899998 456789999999987753
No 71
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=39.46 E-value=57 Score=22.53 Aligned_cols=65 Identities=15% Similarity=0.209 Sum_probs=41.4
Q ss_pred eecCceEEEEecCCCCHHHHHHHHHhh---cCC---cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEE
Q 029397 36 YVGGLTRVLSVERSISFAELMVKLGEF---CGY---SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAI 109 (194)
Q Consensus 36 YvGGeTRIi~V~Rsisf~eL~~kLs~l---~g~---~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvF 109 (194)
-.+|.+..+.|+.+.+..+|+.++++. .|. ...|-|. |..| .|+ ..+++|. +.....|-+.
T Consensus 7 ~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~--Gk~L-------~D~---~tL~~yg-I~~g~~i~l~ 73 (95)
T 1uel_A 7 TLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYA--GKIL-------NDD---TALKEYK-IDEKNFVVVM 73 (95)
T ss_dssp ETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEET--TEEC-------CTT---SBGGGGT-CCSSSEEEEE
T ss_pred eCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEEC--CEEC-------CCc---CcHHHCC-CCCCCEEEEE
Confidence 345777889999999999999999998 444 3455553 3211 122 2355664 2235677776
Q ss_pred EeCC
Q 029397 110 LSPP 113 (194)
Q Consensus 110 LFp~ 113 (194)
+..+
T Consensus 74 ~~~~ 77 (95)
T 1uel_A 74 VTKP 77 (95)
T ss_dssp ESSC
T ss_pred EeCC
Confidence 6554
No 72
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=39.40 E-value=66 Score=23.83 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=28.3
Q ss_pred EeecCceEEEEecCCCCHHHHHHHHHhhcCCc
Q 029397 35 RYVGGLTRVLSVERSISFAELMVKLGEFCGYS 66 (194)
Q Consensus 35 rYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~~ 66 (194)
+-.+|.+..+.|+.+.+-.+|+.++++..|.+
T Consensus 8 k~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip 39 (159)
T 3rt3_B 8 KMLAGNEFQVSLSSSMSVSELKAQITQKIGVH 39 (159)
T ss_dssp EETTSCEEEEECCTTCCHHHHHHHHHHHHCCC
T ss_pred EECCCCEEEEEeCCCCcHHHHHHHHHHHhCCC
Confidence 34578889999999999999999999999874
No 73
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=38.44 E-value=53 Score=25.98 Aligned_cols=37 Identities=14% Similarity=0.259 Sum_probs=29.9
Q ss_pred eEEEEecCCCCHHHHHHHHHhhcCC------cEEE---------EeecCCCC
Q 029397 41 TRVLSVERSISFAELMVKLGEFCGY------SVTL---------RCQLPNGD 77 (194)
Q Consensus 41 TRIi~V~Rsisf~eL~~kLs~l~g~------~v~l---------KYQLP~ed 77 (194)
.|-|.|+-+++|.+|-.-|-..+|. .|.+ .|.+|..+
T Consensus 23 WRri~Vp~~~TL~~LH~vIq~afgw~~~HL~~F~~~~~~~~~~~~y~~~~~~ 74 (188)
T 2i1s_A 23 WRRIQVPENYTFLDLHKAIQAVMDWEDYHLHEFEMVNPKTGMLDKIGAEGDD 74 (188)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHTTCCCCSCEEEEEECTTTCSEEEEESCCC-
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCEeeEEEECCCCcccceEEccCCcc
Confidence 3899999999999999999998886 3544 67777655
No 74
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=37.91 E-value=79 Score=23.25 Aligned_cols=45 Identities=22% Similarity=0.279 Sum_probs=32.6
Q ss_pred HHHHHHHHh---hcCCcEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhC
Q 029397 53 AELMVKLGE---FCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAA 101 (194)
Q Consensus 53 ~eL~~kLs~---l~g~~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~ 101 (194)
..|+.|..| ||+.+|.|=..=|.+.+-... + .+++.|++.|.+..
T Consensus 25 ~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~---s-~~~~~il~rY~~~~ 72 (90)
T 3p57_A 25 FGLMKKAYELSVLCDCEIALIIFNSSNKLFQYA---S-TDMDKVLLKYTEYN 72 (90)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEE---S-SCHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHhccCCceEEEEECCCCCEEEeC---C-CCHHHHHHHHHhcC
Confidence 467777655 699988877777887644443 3 47999999998764
No 75
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=37.86 E-value=54 Score=23.60 Aligned_cols=35 Identities=26% Similarity=0.237 Sum_probs=28.8
Q ss_pred ecCceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEe
Q 029397 37 VGGLTRVLSVERSISFAELMVKLGEFCGYS---VTLRC 71 (194)
Q Consensus 37 vGGeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKY 71 (194)
.+|.+.-+.|+.+.+..+|+.++++..|.+ ..|-|
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~ 45 (152)
T 3b08_A 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (152)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEE
Confidence 457778899999999999999999998873 44555
No 76
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=37.56 E-value=39 Score=23.14 Aligned_cols=27 Identities=0% Similarity=0.015 Sum_probs=23.5
Q ss_pred CceEEEEecCCCCHHHHHHHHHhhcCC
Q 029397 39 GLTRVLSVERSISFAELMVKLGEFCGY 65 (194)
Q Consensus 39 GeTRIi~V~Rsisf~eL~~kLs~l~g~ 65 (194)
|.+..+.|+.+.+..+|+.++++..|.
T Consensus 26 g~~~~~~v~~~~TV~~LK~~I~~~~gi 52 (96)
T 1wx8_A 26 QDCHEFFLAENSNVRRFKKQISKYLHC 52 (96)
T ss_dssp SSEEEEEEETTCCHHHHHHHHHHHTCS
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHhCC
Confidence 445678999999999999999999876
No 77
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=37.30 E-value=59 Score=24.16 Aligned_cols=34 Identities=9% Similarity=0.025 Sum_probs=27.3
Q ss_pred CceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEee
Q 029397 39 GLTRVLSVERSISFAELMVKLGEFCGY---SVTLRCQ 72 (194)
Q Consensus 39 GeTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKYQ 72 (194)
|.+.-|.|+.+.+..+|+.++.+..|. ...|-|+
T Consensus 41 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 77 (125)
T 1j8c_A 41 KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFA 77 (125)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEET
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEEC
Confidence 555678999999999999999999886 3455553
No 78
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=37.08 E-value=12 Score=26.73 Aligned_cols=28 Identities=11% Similarity=0.102 Sum_probs=23.8
Q ss_pred cCceEEEEecCCCCHHHHHHHHHhhcCC
Q 029397 38 GGLTRVLSVERSISFAELMVKLGEFCGY 65 (194)
Q Consensus 38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~ 65 (194)
+|++..|.|+.+.+..+|+.++++..|.
T Consensus 36 ~g~~~~l~v~~~~TV~~LK~~I~~~~gi 63 (101)
T 3m63_B 36 GQDKWEVNVAPESTVLQFKEAINKANGI 63 (101)
T ss_dssp SSCCCCBCCCTTSBHHHHHHHHHHHHSC
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHCc
Confidence 6777778888889999999999988875
No 79
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=34.77 E-value=70 Score=22.69 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=31.3
Q ss_pred HHHHHHHHh---hcCCcEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhC
Q 029397 53 AELMVKLGE---FCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAA 101 (194)
Q Consensus 53 ~eL~~kLs~---l~g~~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~ 101 (194)
..|+.|..| ||+.+|.|=-.=|++.+-.. .+ .+++.|++.|.+..
T Consensus 25 ~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~---~s-~~~~~il~ry~~~~ 72 (77)
T 1egw_A 25 FGLMKKAYELSVLCDCEIALIIFNSSNKLFQY---AS-TDMDKVLLKYTEYN 72 (77)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECTTCCEEEE---ES-SCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcccCCeEEEEEECCCCCEeeC---CC-CCHHHHHHHHHhcc
Confidence 467776555 79998887666677754443 33 36999999998753
No 80
>3ady_A DOTD; 3-layer(BAB) sandwich, MTH1598-like, proton transport; 2.00A {Legionella pneumophila}
Probab=34.03 E-value=67 Score=25.67 Aligned_cols=77 Identities=22% Similarity=0.236 Sum_probs=48.6
Q ss_pred EEeeeCCEeeeCCCCCCeEeec--CceEEEEecCCCCHHHHHHHHHhhcCCcEEEEeecCCCCCCcEEeecC----hhHH
Q 029397 17 FLCSYGGKILPRSMDGQLRYVG--GLTRVLSVERSISFAELMVKLGEFCGYSVTLRCQLPNGDLETLISIKS----DDDL 90 (194)
Q Consensus 17 lmCSyGG~I~PRp~Dg~LrYvG--GeTRIi~V~Rsisf~eL~~kLs~l~g~~v~lKYQLP~edLDaLISVss----DeDL 90 (194)
.|--++=-+.|...|+.++.-+ +.+|.|.++=+=...+|..+|+...|.. ++|.=.--.+.-+|.|.. -.|+
T Consensus 39 ~La~~e~a~~~p~~~~~~~~P~~~~~~~~vs~dW~Gp~eelL~~LA~~~Gy~--f~v~G~rpalPv~I~V~~~~~~l~dv 116 (148)
T 3ady_A 39 EMAKVEKVITPPSKDNTLTIPNAYNLQARASVDWSGPIEELTARIAKAAHFR--FRVLGKSPSVPVLISISTKDESLAEI 116 (148)
T ss_dssp ------------CCCCTTTSCCCGGGGCEEEEEEEEEHHHHHHHHHHHTTCE--EEEESCCCSSCCEEEEEEEEEEHHHH
T ss_pred HHHHhhcccCCcccCCcCcCCchhccccEEEEEeeCCHHHHHHHHHHHcCce--EEeccCCCCCCceEEEccccCcHHHH
Confidence 3333343445545566777777 8899999998888999999999999984 556544455677888876 3444
Q ss_pred HHHHH
Q 029397 91 ANLIE 95 (194)
Q Consensus 91 ~nM~e 95 (194)
-.++.
T Consensus 117 LRdig 121 (148)
T 3ady_A 117 LRDID 121 (148)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 81
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=33.89 E-value=64 Score=23.75 Aligned_cols=38 Identities=13% Similarity=-0.029 Sum_probs=32.2
Q ss_pred EeecCceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEee
Q 029397 35 RYVGGLTRVLSVERSISFAELMVKLGEFCGY---SVTLRCQ 72 (194)
Q Consensus 35 rYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKYQ 72 (194)
...+|.+.-|.|+.+-+-.+|++++++..|. ...|+|+
T Consensus 27 k~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~ 67 (93)
T 3plu_A 27 NDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKG 67 (93)
T ss_dssp ECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred ECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeC
Confidence 3457889999999999999999999999987 3567774
No 82
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=33.35 E-value=53 Score=24.22 Aligned_cols=36 Identities=11% Similarity=0.067 Sum_probs=29.9
Q ss_pred ecCceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEee
Q 029397 37 VGGLTRVLSVERSISFAELMVKLGEFCGYS---VTLRCQ 72 (194)
Q Consensus 37 vGGeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKYQ 72 (194)
.+|.+..|.|+.+.+..+|+.++++..|.+ ..|.|+
T Consensus 36 l~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~ 74 (100)
T 1uh6_A 36 RLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKW 74 (100)
T ss_dssp SSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 346777899999999999999999999873 456665
No 83
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=32.84 E-value=68 Score=22.64 Aligned_cols=33 Identities=12% Similarity=0.082 Sum_probs=26.2
Q ss_pred cCceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEe
Q 029397 38 GGLTRVLSVERSISFAELMVKLGEFCGYS---VTLRC 71 (194)
Q Consensus 38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKY 71 (194)
+|. ..|.|+.+.+..+|+.++++..|.+ ..|-|
T Consensus 31 ~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 66 (100)
T 1yqb_A 31 KDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF 66 (100)
T ss_dssp SCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 454 3689999999999999999998873 45555
No 84
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=32.79 E-value=1.5e+02 Score=21.87 Aligned_cols=36 Identities=17% Similarity=0.142 Sum_probs=27.6
Q ss_pred eecCceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEe
Q 029397 36 YVGGLTRVLSVERSISFAELMVKLGEFCGYS---VTLRC 71 (194)
Q Consensus 36 YvGGeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKY 71 (194)
-..|.+..+.|+.+.+..+|+.++++..|.+ ..|-|
T Consensus 88 ~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~ 126 (159)
T 3rt3_B 88 NNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 126 (159)
T ss_dssp CTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEE
Confidence 3467888888888889999999998887763 44555
No 85
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=31.19 E-value=99 Score=22.35 Aligned_cols=81 Identities=12% Similarity=0.121 Sum_probs=54.5
Q ss_pred EEEEecCCCCHHHHHHHHHhhc--CCcEE-EEeecC---------CCCCC-------cEEeecChhHHHHHHHHHhhhCC
Q 029397 42 RVLSVERSISFAELMVKLGEFC--GYSVT-LRCQLP---------NGDLE-------TLISIKSDDDLANLIEEYDRAAP 102 (194)
Q Consensus 42 RIi~V~Rsisf~eL~~kLs~l~--g~~v~-lKYQLP---------~edLD-------aLISVssDeDL~nM~eEYdr~~~ 102 (194)
.|+++=|.-.+.+++..|.+.- |..+. .+=+.- |.+.+ .|.-|..||+++..++.-.+...
T Consensus 3 ~I~aII~~~~~~~V~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~ 82 (116)
T 1vfj_A 3 LIVAIVRPEKLNEVLKALFQAEVRGLTLSRVQGHGGETERVETYRGTTVKMELHEKVRLEIGVSEPFVKPTVEAILKAAR 82 (116)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTCCCCEEEEEEEECTTCCCHHHHTTSCCSTTCEEEEEEEEEECGGGHHHHHHHHHHHHC
T ss_pred EEEEEECHHHHHHHHHHHHhCCCCeEEEEeeEeEcCccCCccceeceeeeeccCceEEEEEEEcHHHHHHHHHHHHHHhc
Confidence 5788888999999999999862 22221 221111 11122 68888899999999988776543
Q ss_pred ---CCceEEEEeCCCCCCCcCCC
Q 029397 103 ---SSKIRAILSPPASLKKVSPP 122 (194)
Q Consensus 103 ---s~rlRvFLFp~~~~~~~s~~ 122 (194)
.+-=++|+.|....-++..+
T Consensus 83 tg~~GdGkiFV~pVe~~~~irtg 105 (116)
T 1vfj_A 83 TGEVGDGKIFVLPVEKVYRIRTG 105 (116)
T ss_dssp CSSTTCCEEEEEECSEEEETTTC
T ss_pred CCCCCCEEEEEEEhHHeEEecCC
Confidence 45559999998776655443
No 86
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=30.97 E-value=23 Score=26.23 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=21.3
Q ss_pred cCceEEEEecCCCCHHHHHHHHHhh
Q 029397 38 GGLTRVLSVERSISFAELMVKLGEF 62 (194)
Q Consensus 38 GGeTRIi~V~Rsisf~eL~~kLs~l 62 (194)
|+..+.|.|+.+.+++||+..|.+-
T Consensus 3 g~~~~~l~v~~~~TL~~lid~L~~~ 27 (98)
T 1y8x_B 3 SQLPQNIQFSPSAKLQEVLDYLTNS 27 (98)
T ss_dssp --CCCCEECCTTCBHHHHHHHHHHC
T ss_pred CCCcEEEEECCchhHHHHHHHHHhC
Confidence 6678889999999999999999984
No 87
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=30.82 E-value=58 Score=23.19 Aligned_cols=34 Identities=18% Similarity=0.102 Sum_probs=28.0
Q ss_pred cCceEEEEecC-CCCHHHHHHHHHhhcCCc---EEEEe
Q 029397 38 GGLTRVLSVER-SISFAELMVKLGEFCGYS---VTLRC 71 (194)
Q Consensus 38 GGeTRIi~V~R-sisf~eL~~kLs~l~g~~---v~lKY 71 (194)
+|.+.-+.|+. +.+..+|+.++++..|.+ ..|-|
T Consensus 39 ~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~ 76 (111)
T 1we6_A 39 DGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSG 76 (111)
T ss_dssp SSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEEC
T ss_pred CCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEE
Confidence 57777899997 999999999999998863 34555
No 88
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.68 E-value=55 Score=23.82 Aligned_cols=29 Identities=10% Similarity=-0.001 Sum_probs=25.0
Q ss_pred cCceEEEEecCCCCHHHHHHHHHhhcCCc
Q 029397 38 GGLTRVLSVERSISFAELMVKLGEFCGYS 66 (194)
Q Consensus 38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~~ 66 (194)
+|++..|.|+.+-+..+|++++.+..|.+
T Consensus 17 ~Gk~~~v~v~~~~TV~~LK~~I~~~tgIp 45 (100)
T 2dzm_A 17 RDRNVDVVLEDTCTVGEIKQILENELQIP 45 (100)
T ss_dssp SSCEEEEEEETTSBHHHHHHHHHHHHCCC
T ss_pred CCeEEEEEECCCCcHHHHHHHHHHHHCCC
Confidence 35667789999999999999999999873
No 89
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.51 E-value=88 Score=24.13 Aligned_cols=63 Identities=13% Similarity=0.178 Sum_probs=44.6
Q ss_pred cCceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEee---cCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEe
Q 029397 38 GGLTRVLSVERSISFAELMVKLGEFCGY---SVTLRCQ---LPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILS 111 (194)
Q Consensus 38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKYQ---LP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLF 111 (194)
+|+...|.|+.+.+..||+.++++.++. ...|-|. |.++ | -+++|. ..+...|-+-+|
T Consensus 25 ~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~-----------e----TL~~~g-Ik~g~TIhLvi~ 88 (118)
T 2daf_A 25 VGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNN-----------E----TLVQHG-VKPQEIVQVEIF 88 (118)
T ss_dssp TCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSS-----------C----CHHHHS-CCSSCEEEEEEE
T ss_pred CCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCc-----------c----hHHHcC-CCCCCEEEEEEe
Confidence 5667788999999999999999999876 3567775 3222 2 245564 234678888888
Q ss_pred CCCCC
Q 029397 112 PPASL 116 (194)
Q Consensus 112 p~~~~ 116 (194)
...+.
T Consensus 89 s~~p~ 93 (118)
T 2daf_A 89 STNPD 93 (118)
T ss_dssp ESCTT
T ss_pred cCCCc
Confidence 75544
No 90
>4aff_A Nitrogen regulatory protein P-II; signaling protein; HET: ATP FLC; 1.05A {Synechococcus elongatus} SCOP: d.58.5.1 PDB: 2xun_A* 2xul_A* 2xzw_A* 2xbp_A* 2v5h_G* 2jj4_D* 2xg8_A 1qy7_A 3n5b_A* 1ul3_A
Probab=26.01 E-value=2e+02 Score=21.22 Aligned_cols=83 Identities=16% Similarity=0.216 Sum_probs=54.9
Q ss_pred eEEEEecCCCCHHHHHHHHHhhc--CCcEE-EEeecC---------CCC-------CCcEEeecChhHHHHHHHHHhhhC
Q 029397 41 TRVLSVERSISFAELMVKLGEFC--GYSVT-LRCQLP---------NGD-------LETLISIKSDDDLANLIEEYDRAA 101 (194)
Q Consensus 41 TRIi~V~Rsisf~eL~~kLs~l~--g~~v~-lKYQLP---------~ed-------LDaLISVssDeDL~nM~eEYdr~~ 101 (194)
..|.++=|...+.+++..|.+.- |.+++ ++=+.= |.+ ...|.-|..||+++..++--.+..
T Consensus 2 K~I~AIIrp~kl~~vk~AL~~~G~~g~Tv~~V~G~G~q~g~~~~yrG~~~~~~~~pK~kieivV~d~~ve~vv~~I~~~a 81 (116)
T 4aff_A 2 KKIEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVEFLQKLKLEIVVEDAQVDTVIDKIVAAA 81 (116)
T ss_dssp EEEEEEECGGGHHHHHHHHHHTTCCCCEEEEEEECCCCC------CCCSSCCCCEEEEEEEEEECGGGHHHHHHHHHHHH
T ss_pred eEEEEEECHHHHHHHHHHHHHCCCCeEEEEeeEeEcccCCCccccccceeeecccceEEEEEEEcHHHHHHHHHHHHHHh
Confidence 36888889999999999999852 21221 221111 111 145667778999999888665543
Q ss_pred ---CCCceEEEEeCCCCCCCcCCCC
Q 029397 102 ---PSSKIRAILSPPASLKKVSPPA 123 (194)
Q Consensus 102 ---~s~rlRvFLFp~~~~~~~s~~~ 123 (194)
..+-=++|+.|....-++..+-
T Consensus 82 ~Tg~~GDGkIFV~~Ve~~vrIrtge 106 (116)
T 4aff_A 82 RTGENGDGKIFVSPVDQTIRIRTGE 106 (116)
T ss_dssp CCSSTTCEEEEEEECSCCBCTTTCC
T ss_pred cCCCCCCeEEEEEEhHHeEEecCCC
Confidence 3455589999998887776654
No 91
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=25.79 E-value=1.3e+02 Score=21.28 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=25.6
Q ss_pred eEEEEecCCCCHHHHHHHHHhhcCCc---EEEEee
Q 029397 41 TRVLSVERSISFAELMVKLGEFCGYS---VTLRCQ 72 (194)
Q Consensus 41 TRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKYQ 72 (194)
+--+.|+.+.+..+|+.||.+..|.+ ..|-|.
T Consensus 29 ~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~ 63 (95)
T 2kjr_A 29 AFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVF 63 (95)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEE
T ss_pred EEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEe
Confidence 55688999999999999999999863 445443
No 92
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=25.72 E-value=16 Score=26.79 Aligned_cols=31 Identities=16% Similarity=0.125 Sum_probs=25.3
Q ss_pred EeecCCCCCCcEEeecChhHHHHHHHHHhhh
Q 029397 70 RCQLPNGDLETLISIKSDDDLANLIEEYDRA 100 (194)
Q Consensus 70 KYQLP~edLDaLISVssDeDL~nM~eEYdr~ 100 (194)
+|+|++.||-.=+.+++-.+|..++.++|+.
T Consensus 95 ~~~~~~~~l~~g~~i~~~~~l~~~~~~aD~v 125 (130)
T 2hy5_A 95 RNGKDATNIHPKFRISGLGQLVEAAIQADRL 125 (130)
T ss_dssp HHTCSCCCBCTTCEEECTHHHHHHHHHSSEE
T ss_pred hcccccccccCCeEEeCHHHHHHHHHhCCEE
Confidence 3556666887778999999999999999864
No 93
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=25.53 E-value=73 Score=22.77 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=22.5
Q ss_pred cCceEEEEec-CCCCHHHHHHHHHhhcCC
Q 029397 38 GGLTRVLSVE-RSISFAELMVKLGEFCGY 65 (194)
Q Consensus 38 GGeTRIi~V~-Rsisf~eL~~kLs~l~g~ 65 (194)
.|..| |.|+ .+.++.+|+.||.+.+|.
T Consensus 16 ~G~~~-v~v~~~~~Tv~~LK~kI~~~~gi 43 (107)
T 1wf9_A 16 DGLER-VSVDGPHITVSQLKTLIQDQLQI 43 (107)
T ss_dssp SCEEE-EEECCTTSBHHHHHHHHHHHSCC
T ss_pred CCCEE-EEECCCCCcHHHHHHHHHHHhCc
Confidence 35444 6799 999999999999999885
No 94
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=25.51 E-value=1.9e+02 Score=20.73 Aligned_cols=82 Identities=12% Similarity=0.218 Sum_probs=52.6
Q ss_pred eEEEEecCCCCHHHHHHHHHhhc--CCcEE-EEeecC---------CCCC-------CcEEeecChhHHHHHHHHHhhhC
Q 029397 41 TRVLSVERSISFAELMVKLGEFC--GYSVT-LRCQLP---------NGDL-------ETLISIKSDDDLANLIEEYDRAA 101 (194)
Q Consensus 41 TRIi~V~Rsisf~eL~~kLs~l~--g~~v~-lKYQLP---------~edL-------DaLISVssDeDL~nM~eEYdr~~ 101 (194)
..|+++=|...+.+++..|.+.- |..+. .+=+.- +.++ ..|.-|..||+++..++.-.+..
T Consensus 4 k~I~aIIr~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~g~~~~~~g~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~ 83 (114)
T 3bzq_A 4 KLITAIVKPFTLDDVKTSLEDAGVLGMTVSEIQGYGRQKGHTEVYRGAEYSVDFVPKVRIEVVVDDSIVDKVVDSIVRAA 83 (114)
T ss_dssp EEEEEEECGGGHHHHHHHHHHTTCCCCEEEEEEEECC---------------CEEEEEEEEEEEETTTHHHHHHHHHHHH
T ss_pred EEEEEEECHHHHHHHHHHHHHCCCCeEEEEeeEEeccccCcccceeccccccccccEEEEEEEECHHHHHHHHHHHHHHh
Confidence 46888889999999999999862 11111 111110 1111 25666777899999988766553
Q ss_pred C---CCceEEEEeCCCCCCCcCCC
Q 029397 102 P---SSKIRAILSPPASLKKVSPP 122 (194)
Q Consensus 102 ~---s~rlRvFLFp~~~~~~~s~~ 122 (194)
. .+-=.+|+.|....-++..+
T Consensus 84 ~tg~~GdGkiFV~pVe~~~rirtg 107 (114)
T 3bzq_A 84 RTGKIGDGKVWVSPVDTIVRVRTG 107 (114)
T ss_dssp CCSSTTCCEEEEEEESCCBCTTTC
T ss_pred cCCCCCCEEEEEEEhHHeEEecCC
Confidence 3 45568999998877766544
No 95
>3nku_A DRRA, SIDM; posttranslational modification, ampylation, adenylylation, R RAB1, vesicular transport, protein transport; HET: MSE PGE; 2.10A {Legionella pneumophila subsp}
Probab=25.15 E-value=44 Score=27.59 Aligned_cols=25 Identities=24% Similarity=0.581 Sum_probs=20.2
Q ss_pred CCCCcEEeecChhHHHHHHHHHhhh
Q 029397 76 GDLETLISIKSDDDLANLIEEYDRA 100 (194)
Q Consensus 76 edLDaLISVssDeDL~nM~eEYdr~ 100 (194)
.|||+.|-|.+|||+...---+|.+
T Consensus 104 sdldafvivkndedikkvkpvfdal 128 (213)
T 3nku_A 104 SDLDAFVIVKNDEDIKKVKPVFDAL 128 (213)
T ss_dssp CCCEEEEECSSTHHHHHHHHHHHHH
T ss_pred cccceEEEecchhhhhhhhhHHHHH
Confidence 5899999999999998866555543
No 96
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=24.95 E-value=1.1e+02 Score=23.86 Aligned_cols=31 Identities=26% Similarity=0.274 Sum_probs=27.4
Q ss_pred EeecCceEEEEecCCCCHHHHHHHHHhhcCC
Q 029397 35 RYVGGLTRVLSVERSISFAELMVKLGEFCGY 65 (194)
Q Consensus 35 rYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~ 65 (194)
+-..|.+..+.|+.+.+..+|+.++.+..|.
T Consensus 6 k~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gi 36 (169)
T 3l0w_B 6 KTLTGKTITLEVESSDTIDNVKSKIQDKEGI 36 (169)
T ss_dssp EETTSCEEEEECCTTCBHHHHHHHHHHHHCC
T ss_pred EeCCCCEEEEEeCCCCCHHHHHHHHHHHHCc
Confidence 3456888899999999999999999999886
No 97
>2gw8_A PII signal transduction protein; transcriptional regulation, neisse structural genomics, oxford protein production facility; 1.85A {Neisseria meningitidis}
Probab=24.66 E-value=2e+02 Score=20.70 Aligned_cols=83 Identities=12% Similarity=0.191 Sum_probs=53.4
Q ss_pred ceEEEEecCCCCHHHHHHHHHhhc--CCcEE-EEe---ecC------CC-------CCCcEEeecChhHHHHHHHHHhhh
Q 029397 40 LTRVLSVERSISFAELMVKLGEFC--GYSVT-LRC---QLP------NG-------DLETLISIKSDDDLANLIEEYDRA 100 (194)
Q Consensus 40 eTRIi~V~Rsisf~eL~~kLs~l~--g~~v~-lKY---QLP------~e-------dLDaLISVssDeDL~nM~eEYdr~ 100 (194)
-..|++|=|...+.+++..|.+.- |..++ .+= |.+ +. ....|.-|..||+++..++.-.+.
T Consensus 3 Mk~I~aII~~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~K~~ieivv~d~~v~~vv~~I~~~ 82 (114)
T 2gw8_A 3 MKKIEAIVKPFKLDDVREALTEIGITGMTVSEVKGFGRQKGHTEIYRGAEYAVDFLPKIKIELVLADDAVERAIDVIVEV 82 (114)
T ss_dssp EEEEEEEECGGGHHHHHHHHHHTTCCCCEEEEEEEECC--------------CCEEEEEEEEEEEEGGGHHHHHHHHHHH
T ss_pred cEEEEEEECHHHHHHHHHHHHHCCCCeEEEEeeEeecccCCCccceecccccccccceEEEEEEEcHHHHHHHHHHHHHH
Confidence 457888889999999999999861 21111 111 111 00 113556666789999998876655
Q ss_pred CC---CCceEEEEeCCCCCCCcCCC
Q 029397 101 AP---SSKIRAILSPPASLKKVSPP 122 (194)
Q Consensus 101 ~~---s~rlRvFLFp~~~~~~~s~~ 122 (194)
.. .+-=.+|+.|....-++..+
T Consensus 83 ~~tg~~GdGkiFV~pVe~~~rirtg 107 (114)
T 2gw8_A 83 ARSGKIGDGKIFVLPVEEAIRIRTG 107 (114)
T ss_dssp HCCSSTTCCEEEEEEESCCBCTTTS
T ss_pred hCCCCCCCEEEEEEEhHHeEEecCC
Confidence 33 45568999998877766544
No 98
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=24.34 E-value=16 Score=27.04 Aligned_cols=32 Identities=25% Similarity=0.269 Sum_probs=0.0
Q ss_pred EeecCceEEEEecCCCCHHHHHHHHHhhcCCc
Q 029397 35 RYVGGLTRVLSVERSISFAELMVKLGEFCGYS 66 (194)
Q Consensus 35 rYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~~ 66 (194)
+..+|.+..|.|+.+.+..+|+.++++..|.+
T Consensus 6 k~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip 37 (128)
T 3u5e_m 6 KTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 37 (128)
T ss_dssp --------------------------------
T ss_pred EeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcC
Confidence 34578888999999999999999999988764
No 99
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=23.19 E-value=1.5e+02 Score=21.80 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=27.9
Q ss_pred cCceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEe
Q 029397 38 GGLTRVLSVERSISFAELMVKLGEFCGY---SVTLRC 71 (194)
Q Consensus 38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKY 71 (194)
.|.+..+.|.++.+|..|+.+.++..|. .+.|.|
T Consensus 39 ~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~F 75 (106)
T 2eke_C 39 GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY 75 (106)
T ss_dssp SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEE
Confidence 4677788999999999999999998876 455655
No 100
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=23.18 E-value=1.2e+02 Score=21.76 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=26.0
Q ss_pred eEEEEecCCCCHHHHHHHHHhhcCCc---EEEEee
Q 029397 41 TRVLSVERSISFAELMVKLGEFCGYS---VTLRCQ 72 (194)
Q Consensus 41 TRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKYQ 72 (194)
+--+.|+.+.+..+|+.||.+..|.+ ..|-|.
T Consensus 28 ~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~ 62 (97)
T 2kj6_A 28 SADARFSPQMSVEAVKEKLWKKCGTSVNSMALELY 62 (97)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEE
T ss_pred EEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEe
Confidence 45588999999999999999999873 455554
No 101
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=23.17 E-value=2.1e+02 Score=20.41 Aligned_cols=81 Identities=14% Similarity=0.185 Sum_probs=51.6
Q ss_pred EEEEecCCCCHHHHHHHHHhhc--CCcEE-EEe---ecC------CC-------CCCcEEeecChhHHHHHHHHHhhhCC
Q 029397 42 RVLSVERSISFAELMVKLGEFC--GYSVT-LRC---QLP------NG-------DLETLISIKSDDDLANLIEEYDRAAP 102 (194)
Q Consensus 42 RIi~V~Rsisf~eL~~kLs~l~--g~~v~-lKY---QLP------~e-------dLDaLISVssDeDL~nM~eEYdr~~~ 102 (194)
.|+++=|...+.+++..|.+.- |..++ .+= |.+ +. ....|.-|..||+++..++.-.+...
T Consensus 3 ~I~aII~~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~k~~ieivv~d~~v~~vv~~I~~~~~ 82 (112)
T 1hwu_A 3 QVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVKIEVVVDDKVVEQAVDAIIKAAR 82 (112)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTCCCCEEEEEEEEC-------------CCCCEEEEEEEEEEECGGGHHHHHHHHHHHHC
T ss_pred EEEEEECHHHHHHHHHHHHHCCCCeEEEEeeEeEcCccCCccccccccccccccceEEEEEEEcHHHHHHHHHHHHHHhc
Confidence 6788889999999999999861 21211 111 111 00 11356667789999999887665533
Q ss_pred ---CCceEEEEeCCCCCCCcCCC
Q 029397 103 ---SSKIRAILSPPASLKKVSPP 122 (194)
Q Consensus 103 ---s~rlRvFLFp~~~~~~~s~~ 122 (194)
.+-=.+|+.|....-++..+
T Consensus 83 tg~~GdGkiFV~~V~~~~rirtg 105 (112)
T 1hwu_A 83 TGKIGDGKIFVQEVEQVIRIRTG 105 (112)
T ss_dssp CSSTTCCEEEEEECSEEEETTTC
T ss_pred CCCCCCEEEEEEEhHHEEEecCC
Confidence 45568999998776655443
No 102
>3lmb_A Uncharacterized protein; protein OLEI01261, unknown function, chlorobaculum tepidum T structural genomics, PSI2, MCSG; HET: MSE; 2.10A {Oleispira antarctica rb-8} SCOP: d.38.1.0
Probab=22.76 E-value=1.2e+02 Score=23.77 Aligned_cols=48 Identities=13% Similarity=0.306 Sum_probs=31.9
Q ss_pred cEEEEeecCCCC-CCcEEeecChhHHHHHHHHHhhhCC-CCceEEEEeCC
Q 029397 66 SVTLRCQLPNGD-LETLISIKSDDDLANLIEEYDRAAP-SSKIRAILSPP 113 (194)
Q Consensus 66 ~v~lKYQLP~ed-LDaLISVssDeDL~nM~eEYdr~~~-s~rlRvFLFp~ 113 (194)
+..|+|--|+.. +-+-.+++.+|+++...+.+.+-.+ ...+.+-|+-.
T Consensus 90 ~~~I~yl~P~~~~~~a~~~~~~~~~~~~i~~~l~~~gK~~~~l~v~I~d~ 139 (165)
T 3lmb_A 90 EGNMKYIAPVYGRIRAICHAPDEEELANFFDHFERKGKARISLEAAIYND 139 (165)
T ss_dssp EEEEEECSCCCSCEEEEEECCCHHHHHHHHHHHHHHSEEEEEEEEEEESC
T ss_pred EeEEEEccCccCCeEEEEEeCcHHHHHHHHHHHHhCCceEEEEEEEEEeC
Confidence 356999999864 4455666778999999999987432 23333444443
No 103
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=22.37 E-value=1e+02 Score=21.44 Aligned_cols=29 Identities=3% Similarity=-0.065 Sum_probs=24.9
Q ss_pred EEecCCCCHHHHHHHHHhhcCCc---EEEEee
Q 029397 44 LSVERSISFAELMVKLGEFCGYS---VTLRCQ 72 (194)
Q Consensus 44 i~V~Rsisf~eL~~kLs~l~g~~---v~lKYQ 72 (194)
+.|+.+++..+|+.||.+.+|.+ ..|-|.
T Consensus 19 ~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~ 50 (86)
T 4b6w_A 19 KRYGLAQTIESIKENVFTHFATPPEYMQLQLI 50 (86)
T ss_dssp EEEETTSBHHHHHHHHHTTSCCCGGGEEEEEE
T ss_pred EEcCccCcHHHHHHHHHHHHCCCHHHEEEEEe
Confidence 77999999999999999999983 566664
No 104
>2o66_A PII protein; regulation of nitrogen and carbon metabolism, biosynthetic protein; HET: FLC; 1.90A {Arabidopsis thaliana} PDB: 2o67_A 2rd5_C*
Probab=21.89 E-value=1.2e+02 Score=23.13 Aligned_cols=83 Identities=13% Similarity=0.176 Sum_probs=53.6
Q ss_pred eEEEEecCCCCHHHHHHHHHhhc--CCcEE-EEeecC---------CCCC--------CcEEeecChhHHHHHHHHHhhh
Q 029397 41 TRVLSVERSISFAELMVKLGEFC--GYSVT-LRCQLP---------NGDL--------ETLISIKSDDDLANLIEEYDRA 100 (194)
Q Consensus 41 TRIi~V~Rsisf~eL~~kLs~l~--g~~v~-lKYQLP---------~edL--------DaLISVssDeDL~nM~eEYdr~ 100 (194)
..|++|=|...+.+++..|.+.- |.+++ ++=..- +.++ ..|.-|..||+++..++.-.+.
T Consensus 14 K~I~AIIr~~k~~~V~~AL~~~G~~G~Tv~~v~G~G~q~g~~~~~rG~~~~~~~~~pK~~ieivV~de~ve~Vv~~I~~~ 93 (135)
T 2o66_A 14 YKVEAIVRPWRIQQVSSALLKIGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVKKDQVESVINTIIEG 93 (135)
T ss_dssp EEEEEEECGGGHHHHHHHHHHTTCCCCEEEEEEECC---------------CCCCEEEEEEEEEEEGGGHHHHHHHHHHH
T ss_pred EEEEEEECHHHHHHHHHHHHHCCCceEEEEeeEeEeccCCCceeEcceeeeccccCceEEEEEEEcHHHHHHHHHHHHHH
Confidence 47889999999999999999851 22221 111100 1111 2566777899999999876655
Q ss_pred CC---CCceEEEEeCCCCCCCcCCCC
Q 029397 101 AP---SSKIRAILSPPASLKKVSPPA 123 (194)
Q Consensus 101 ~~---s~rlRvFLFp~~~~~~~s~~~ 123 (194)
.. .+-=++|+.|....-++..+-
T Consensus 94 ~~tg~~GdGkIFV~pVe~~vrIrTge 119 (135)
T 2o66_A 94 ARTGEIGDGKIFVLPVSDVIRVRTGE 119 (135)
T ss_dssp HCCSSTTCCEEEEEEECEEEETTTCC
T ss_pred hCCCCCCCEEEEEEEhHHEEEecCCC
Confidence 33 444589999987776665443
No 105
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=21.49 E-value=1.2e+02 Score=21.38 Aligned_cols=32 Identities=9% Similarity=0.069 Sum_probs=25.6
Q ss_pred eEeecC---ceEEEEecC---------CCCHHHHHHHHHhhc--CC
Q 029397 34 LRYVGG---LTRVLSVER---------SISFAELMVKLGEFC--GY 65 (194)
Q Consensus 34 LrYvGG---eTRIi~V~R---------sisf~eL~~kLs~l~--g~ 65 (194)
++..+| .+.-|.|+. +.+..+|+.++++.. |.
T Consensus 17 Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gi 62 (107)
T 1x1m_A 17 VKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESV 62 (107)
T ss_dssp EEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTC
T ss_pred EEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCC
Confidence 466677 788888554 499999999999998 65
No 106
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=21.45 E-value=2.4e+02 Score=20.50 Aligned_cols=83 Identities=13% Similarity=0.153 Sum_probs=53.2
Q ss_pred eEEEEecCCCCHHHHHHHHHhhcCCcEE---EEeecCCCC----------------CCcEEeecChhHHHHHHHHHhhhC
Q 029397 41 TRVLSVERSISFAELMVKLGEFCGYSVT---LRCQLPNGD----------------LETLISIKSDDDLANLIEEYDRAA 101 (194)
Q Consensus 41 TRIi~V~Rsisf~eL~~kLs~l~g~~v~---lKYQLP~ed----------------LDaLISVssDeDL~nM~eEYdr~~ 101 (194)
..|++|=|...+.+++..|.+.--..++ .+=+.-... ..-|.-|..||+++..++.-.+..
T Consensus 4 k~I~aII~~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~g~~~~~~G~~~~~~~~pK~~ieivv~de~v~~vv~~I~~~~ 83 (119)
T 2j9c_A 4 KKVEAIIRPEKLEIVKKALSDAGYVGMTVSEVKGRGVQGGIVERYRGREYIVDLIPKVKIELVVKEEDVDNVIDIICENA 83 (119)
T ss_dssp EEEEEEECGGGHHHHHHHHHHTTCCCEEEEEEEEECCSSSSCCEETTEECSSSCEEEEEEEEEEEGGGHHHHHHHHHHHH
T ss_pred EEEEEEECHHHHHHHHHHHHHCCCCeEEEEeeEeecccCCccceeeccccccccCcEEEEEEEEcHHHHHHHHHHHHHHh
Confidence 4678888999999999999986211122 111111100 112556667899999998776654
Q ss_pred C---CCceEEEEeCCCCCCCcCCCC
Q 029397 102 P---SSKIRAILSPPASLKKVSPPA 123 (194)
Q Consensus 102 ~---s~rlRvFLFp~~~~~~~s~~~ 123 (194)
. .+-=++|+.|....-++..+-
T Consensus 84 ~tg~~GdGkiFV~pVe~~~rirtge 108 (119)
T 2j9c_A 84 RTGNPGDGKIFVIPVERVVRVRTKE 108 (119)
T ss_dssp CCSSTTCEEEEEEEECEEEETTTCC
T ss_pred cCCCCCCEEEEEEEhHHEEEecCCC
Confidence 4 444599999987776665443
No 107
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=21.20 E-value=68 Score=23.64 Aligned_cols=29 Identities=10% Similarity=0.184 Sum_probs=25.4
Q ss_pred ecCceEEEEecCCCCHHHHHHHHHhhcCC
Q 029397 37 VGGLTRVLSVERSISFAELMVKLGEFCGY 65 (194)
Q Consensus 37 vGGeTRIi~V~Rsisf~eL~~kLs~l~g~ 65 (194)
.+|++.-|.|+.+.+..||+.++.+..+.
T Consensus 15 l~g~~~~v~V~~~~TV~dLK~~I~~~~~i 43 (105)
T 1v2y_A 15 MDGEVMPVVVVQNATVLDLKKAIQRYVQL 43 (105)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEECCCChHHHHHHHHHHHhCC
Confidence 35888889999999999999999998753
No 108
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=21.04 E-value=1.6e+02 Score=19.97 Aligned_cols=25 Identities=24% Similarity=0.157 Sum_probs=21.1
Q ss_pred eEEEEecCCCCHHHHHHHHHhhc--CC
Q 029397 41 TRVLSVERSISFAELMVKLGEFC--GY 65 (194)
Q Consensus 41 TRIi~V~Rsisf~eL~~kLs~l~--g~ 65 (194)
+.-|.|+.+.+..+|+.++++.. |.
T Consensus 21 ~~~v~v~~~~TV~~lK~~I~~~~~~~i 47 (93)
T 1wgd_A 21 DLELSGDRGWSVGHLKAHLSRVYPERP 47 (93)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHSTTCC
T ss_pred EEEEecCCCCcHHHHHHHHHHHhcCCC
Confidence 55567779999999999999987 54
No 109
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=20.89 E-value=97 Score=22.79 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=25.3
Q ss_pred cCceEEEEecCCCCHHHHHHHHHhhcCC
Q 029397 38 GGLTRVLSVERSISFAELMVKLGEFCGY 65 (194)
Q Consensus 38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~ 65 (194)
||.+..|.|+.+.+-.+|+.++++..|.
T Consensus 28 ~~~~~~lev~~~~TV~~lK~kI~~k~gi 55 (100)
T 1wju_A 28 KDRKNLLETRLHITGRELRSKIAETFGL 55 (100)
T ss_dssp CSSSEEEEEESSSBHHHHHHHHHHHTTC
T ss_pred CCcEEEEEeCCcCHHHHHHHHHHHHHCc
Confidence 3677899999999999999999999985
No 110
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=20.72 E-value=1.9e+02 Score=19.51 Aligned_cols=34 Identities=15% Similarity=0.122 Sum_probs=27.0
Q ss_pred cC-ceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEe
Q 029397 38 GG-LTRVLSVERSISFAELMVKLGEFCGY---SVTLRC 71 (194)
Q Consensus 38 GG-eTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKY 71 (194)
.| +..-+.|.++.+|..|+.+.++..|. .+.|.|
T Consensus 16 ~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f 53 (79)
T 3a4r_A 16 EKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF 53 (79)
T ss_dssp STTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE
Confidence 45 46678999999999999999998876 345555
No 111
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=20.72 E-value=1.8e+02 Score=21.93 Aligned_cols=65 Identities=18% Similarity=0.281 Sum_probs=0.0
Q ss_pred EEEecCCCCHHHHHHHHHhhcCCcE-EEE-----------eecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceE
Q 029397 43 VLSVERSISFAELMVKLGEFCGYSV-TLR-----------CQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIR 107 (194)
Q Consensus 43 Ii~V~Rsisf~eL~~kLs~l~g~~v-~lK-----------YQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlR 107 (194)
++.+..+-.+.|-..|+++..+..+ ++| +.--...+..||-|++||+|+.--|--..+.-..|.|
T Consensus 5 vliisndkklieearkmaekanlelrtvktedelkkyleefrkesqnikvlilvsndeeldkakelaqkmeidvrtr 81 (110)
T 2kpo_A 5 VLIISNDKKLIEEARKMAEKANLELRTVKTEDELKKYLEEFRKESQNIKVLILVSNDEELDKAKELAQKMEIDVRTR 81 (110)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTCEEEECCSHHHHHHHHHHHTSSTTSEEEEEEESSHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEcCcHHHHHHHHHHHHhcCceeeeeccHHHHHHHHHHHHhhccCeEEEEEEcChHHHHHHHHHHHhhceeeeee
No 112
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=20.54 E-value=1.7e+02 Score=19.24 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=25.2
Q ss_pred cCceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEe
Q 029397 38 GGLTRVLSVERSISFAELMVKLGEFCGY---SVTLRC 71 (194)
Q Consensus 38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKY 71 (194)
.|+.--+.|.++.+|..|+.+.++..|. .+.|.|
T Consensus 10 ~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f 46 (72)
T 1wm3_A 10 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 46 (72)
T ss_dssp TSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEE
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEE
Confidence 4566778888888888888888887765 345555
No 113
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=20.12 E-value=3e+02 Score=21.08 Aligned_cols=61 Identities=7% Similarity=0.129 Sum_probs=41.7
Q ss_pred eEEEEecCCCCHHHHHHHHHhhcCCcEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEeCCC
Q 029397 41 TRVLSVERSISFAELMVKLGEFCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSPPA 114 (194)
Q Consensus 41 TRIi~V~Rsisf~eL~~kLs~l~g~~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLFp~~ 114 (194)
.+|+.++|+-...+...++.+..+.-..+ -.+|++.++++.++++..+. -++|.+++.-..
T Consensus 41 ~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-----------~~Dv~~~~~v~~~~~~~~~~--~g~id~lv~nAg 101 (271)
T 3ek2_A 41 AELAFTYVGDRFKDRITEFAAEFGSELVF-----------PCDVADDAQIDALFASLKTH--WDSLDGLVHSIG 101 (271)
T ss_dssp CEEEEEESSGGGHHHHHHHHHHTTCCCEE-----------ECCTTCHHHHHHHHHHHHHH--CSCEEEEEECCC
T ss_pred CCEEEEecchhhHHHHHHHHHHcCCcEEE-----------ECCCCCHHHHHHHHHHHHHH--cCCCCEEEECCc
Confidence 37888888866666666665555431112 13688999999999987654 368998887653
Done!