Query 029398
Match_columns 194
No_of_seqs 158 out of 1089
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 20:10:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029398.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029398hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cu7_A KIAA1915 protein; nucle 99.3 3.1E-12 1.1E-16 90.5 4.3 40 3-42 18-57 (72)
2 1gv2_A C-MYB, MYB proto-oncoge 99.1 5E-11 1.7E-15 88.8 4.3 40 3-42 65-104 (105)
3 2din_A Cell division cycle 5-l 99.1 5.2E-11 1.8E-15 82.7 3.8 39 3-42 18-56 (66)
4 1guu_A C-MYB, MYB proto-oncoge 99.1 7.8E-11 2.7E-15 78.0 4.1 39 3-41 12-51 (52)
5 2k9n_A MYB24; R2R3 domain, DNA 99.1 6.3E-11 2.2E-15 89.1 3.9 40 3-42 62-101 (107)
6 2llk_A Cyclin-D-binding MYB-li 99.0 5.5E-11 1.9E-15 85.5 2.6 35 3-38 32-66 (73)
7 2d9a_A B-MYB, MYB-related prot 99.0 5.9E-11 2E-15 80.9 2.5 40 3-42 17-57 (60)
8 3zqc_A MYB3; transcription-DNA 99.0 1.2E-10 4.1E-15 90.4 4.1 40 3-42 63-102 (131)
9 1gvd_A MYB proto-oncogene prot 99.0 1.9E-10 6.3E-15 76.3 4.1 38 3-40 12-50 (52)
10 2ltp_A Nuclear receptor corepr 98.6 2.7E-11 9.3E-16 89.4 0.0 40 3-42 25-64 (89)
11 1h8a_C AMV V-MYB, MYB transfor 99.0 1.3E-10 4.6E-15 89.6 3.8 40 3-42 88-127 (128)
12 1w0t_A Telomeric repeat bindin 99.0 2E-10 6.9E-15 76.6 3.9 40 3-42 11-53 (53)
13 1ity_A TRF1; helix-turn-helix, 99.0 5.2E-10 1.8E-14 78.3 4.3 40 3-42 19-61 (69)
14 3osg_A MYB21; transcription-DN 98.9 5.7E-10 2E-14 86.1 4.9 40 3-42 71-110 (126)
15 1x41_A Transcriptional adaptor 98.9 4.7E-10 1.6E-14 76.8 3.6 39 3-41 17-56 (60)
16 2dim_A Cell division cycle 5-l 98.9 3E-10 1E-14 79.6 2.5 40 3-42 18-58 (70)
17 2yum_A ZZZ3 protein, zinc fing 98.9 9.4E-10 3.2E-14 77.9 3.0 40 3-42 17-62 (75)
18 1ign_A Protein (RAP1); RAP1,ye 98.8 1.6E-09 5.6E-14 93.5 4.2 40 3-42 17-62 (246)
19 2elk_A SPCC24B10.08C protein; 98.8 3.3E-09 1.1E-13 72.3 3.7 37 3-39 18-56 (58)
20 2cqr_A RSGI RUH-043, DNAJ homo 98.8 3E-09 1E-13 76.4 3.5 38 3-40 27-68 (73)
21 3sjm_A Telomeric repeat-bindin 98.7 7.3E-09 2.5E-13 72.2 4.4 40 3-42 20-62 (64)
22 2ckx_A NGTRF1, telomere bindin 98.7 8.4E-09 2.9E-13 75.7 4.6 40 3-42 9-53 (83)
23 1x58_A Hypothetical protein 49 98.6 3.4E-08 1.2E-12 69.3 4.4 39 3-41 17-58 (62)
24 2cjj_A Radialis; plant develop 98.6 3.7E-08 1.3E-12 73.6 4.3 40 3-42 17-60 (93)
25 2yus_A SWI/SNF-related matrix- 98.5 3.7E-08 1.3E-12 71.4 2.5 36 3-38 27-62 (79)
26 2juh_A Telomere binding protei 98.5 7.9E-08 2.7E-12 75.2 3.8 40 3-42 26-70 (121)
27 2aje_A Telomere repeat-binding 98.4 2E-07 6.8E-12 71.2 4.8 40 3-42 22-66 (105)
28 1gv2_A C-MYB, MYB proto-oncoge 98.4 1.8E-07 6.2E-12 69.4 4.4 40 3-42 13-53 (105)
29 3osg_A MYB21; transcription-DN 98.4 1.7E-07 5.8E-12 72.2 4.3 40 3-42 20-59 (126)
30 1h89_C C-MYB, MYB proto-oncoge 98.4 1.6E-07 5.6E-12 74.5 3.8 40 3-42 67-107 (159)
31 1h8a_C AMV V-MYB, MYB transfor 98.4 2.3E-07 7.7E-12 71.4 4.1 40 3-42 36-76 (128)
32 2k9n_A MYB24; R2R3 domain, DNA 98.3 4.4E-07 1.5E-11 67.9 4.0 40 3-42 10-50 (107)
33 2roh_A RTBP1, telomere binding 98.3 4.4E-07 1.5E-11 71.0 4.0 40 3-42 40-84 (122)
34 3zqc_A MYB3; transcription-DNA 98.2 9.9E-07 3.4E-11 68.2 3.3 40 3-42 11-51 (131)
35 2eqr_A N-COR1, N-COR, nuclear 98.1 1.8E-06 6.1E-11 59.2 3.9 37 3-39 21-57 (61)
36 3hm5_A DNA methyltransferase 1 97.8 2.5E-05 8.7E-10 58.5 5.5 40 3-42 39-83 (93)
37 2iw5_B Protein corest, REST co 97.8 1.2E-05 4E-10 69.1 3.1 39 3-41 142-180 (235)
38 2cqq_A RSGI RUH-037, DNAJ homo 97.7 1.7E-05 5.8E-10 56.5 3.3 36 3-39 17-56 (72)
39 1h89_C C-MYB, MYB proto-oncoge 97.7 6E-06 2.1E-10 65.4 0.5 40 3-42 15-55 (159)
40 1wgx_A KIAA1903 protein; MYB D 96.7 0.00073 2.5E-08 48.4 2.6 40 3-42 17-60 (73)
41 1ug2_A 2610100B20RIK gene prod 96.2 0.0043 1.5E-07 46.5 3.8 38 3-40 42-82 (95)
42 1fex_A TRF2-interacting telome 96.1 0.0046 1.6E-07 42.2 3.5 38 3-40 11-58 (59)
43 2lr8_A CAsp8-associated protei 94.8 0.0015 5.3E-08 46.5 0.0 37 3-40 23-62 (70)
44 4iej_A DNA methyltransferase 1 95.6 0.022 7.5E-07 42.6 5.6 40 3-42 39-83 (93)
45 4eef_G F-HB80.4, designed hema 93.9 0.016 5.4E-07 41.7 1.0 34 4-37 30-67 (74)
46 1ign_A Protein (RAP1); RAP1,ye 93.1 0.049 1.7E-06 47.0 2.9 28 15-42 173-200 (246)
47 4a69_C Nuclear receptor corepr 92.9 0.13 4.3E-06 37.9 4.6 36 3-38 52-87 (94)
48 2yqk_A Arginine-glutamic acid 91.6 0.26 8.8E-06 33.5 4.5 36 3-38 18-54 (63)
49 2xag_B REST corepressor 1; ami 91.5 0.1 3.4E-06 48.9 3.1 36 3-38 389-424 (482)
50 2ebi_A DNA binding protein GT- 88.9 0.19 6.6E-06 35.5 2.1 40 3-42 13-66 (86)
51 2crg_A Metastasis associated p 88.0 0.7 2.4E-05 32.0 4.5 35 3-37 17-52 (70)
52 3hug_A RNA polymerase sigma fa 76.8 4.6 0.00016 27.9 5.1 46 3-50 43-88 (92)
53 4b4c_A Chromodomain-helicase-D 73.1 4.4 0.00015 32.4 4.8 39 2-40 15-58 (211)
54 1ofc_X ISWI protein; nuclear p 61.9 9.7 0.00033 33.5 4.9 38 2-39 118-156 (304)
55 2li6_A SWI/SNF chromatin-remod 58.4 7.2 0.00025 29.0 3.1 39 4-42 53-99 (116)
56 2lm1_A Lysine-specific demethy 51.9 17 0.00058 26.3 4.1 39 4-42 48-98 (107)
57 2o8x_A Probable RNA polymerase 51.8 19 0.00067 22.7 4.0 37 4-42 22-58 (70)
58 1kkx_A Transcription regulator 49.0 9.2 0.00031 29.0 2.3 39 4-42 52-98 (123)
59 2jrz_A Histone demethylase jar 48.6 18 0.00062 26.9 3.9 39 4-42 44-94 (117)
60 2cxy_A BAF250B subunit, HBAF25 47.9 19 0.00067 27.0 4.0 39 4-42 55-105 (125)
61 2eqy_A RBP2 like, jumonji, at 45.8 22 0.00075 26.7 4.0 39 4-42 46-96 (122)
62 1ku3_A Sigma factor SIGA; heli 45.6 27 0.00094 22.8 4.1 36 5-42 18-57 (73)
63 1xsv_A Hypothetical UPF0122 pr 42.8 60 0.002 23.5 5.9 40 4-45 32-71 (113)
64 2p7v_B Sigma-70, RNA polymeras 42.6 28 0.00096 22.4 3.7 27 11-38 23-49 (68)
65 1ig6_A MRF-2, modulator recogn 41.7 19 0.00065 26.1 3.0 39 4-42 37-88 (107)
66 2rq5_A Protein jumonji; develo 41.6 26 0.0009 26.5 3.9 38 4-41 46-96 (121)
67 2kk0_A AT-rich interactive dom 38.5 31 0.0011 26.6 3.9 39 4-42 68-119 (145)
68 2jxj_A Histone demethylase jar 37.7 15 0.0005 26.2 1.8 38 4-41 40-89 (96)
69 1c20_A DEAD ringer protein; DN 35.5 37 0.0013 25.4 3.8 39 4-42 56-107 (128)
70 2xag_B REST corepressor 1; ami 34.9 8.1 0.00028 36.1 0.0 35 4-38 199-233 (482)
71 2lfw_A PHYR sigma-like domain; 33.2 24 0.00084 26.2 2.5 37 4-42 100-136 (157)
72 2yqf_A Ankyrin-1; death domain 32.7 38 0.0013 24.6 3.4 30 4-34 20-49 (111)
73 1x3u_A Transcriptional regulat 31.8 76 0.0026 20.4 4.6 32 5-38 24-55 (79)
74 2of5_A Death domain-containing 31.5 49 0.0017 24.6 3.9 30 4-34 26-55 (114)
75 2of5_H Leucine-rich repeat and 31.1 47 0.0016 24.5 3.7 30 4-34 15-44 (118)
76 1wxp_A THO complex subunit 1; 31.0 48 0.0016 24.0 3.7 29 4-33 20-48 (110)
77 2o71_A Death domain-containing 28.9 52 0.0018 24.5 3.6 30 4-34 26-55 (115)
78 3ulq_B Transcriptional regulat 28.5 68 0.0023 22.3 4.0 34 5-40 37-70 (90)
79 1s7o_A Hypothetical UPF0122 pr 28.2 1E+02 0.0035 22.4 5.1 40 4-45 29-68 (113)
80 1je8_A Nitrate/nitrite respons 27.5 70 0.0024 21.5 3.9 32 5-38 29-60 (82)
81 3c57_A Two component transcrip 27.1 67 0.0023 22.2 3.8 35 5-42 35-69 (95)
82 1tty_A Sigma-A, RNA polymerase 25.1 89 0.003 21.1 4.1 25 12-37 37-61 (87)
83 1fad_A Protein (FADD protein); 23.2 35 0.0012 24.0 1.7 30 4-34 16-45 (99)
84 1fse_A GERE; helix-turn-helix 21.7 1.1E+02 0.0038 19.1 3.9 31 5-37 19-49 (74)
85 2jpc_A SSRB; DNA binding prote 20.5 1.4E+02 0.0048 18.1 4.0 32 5-38 6-37 (61)
86 2rnj_A Response regulator prot 20.3 78 0.0027 21.4 3.0 32 5-38 37-68 (91)
No 1
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.26 E-value=3.1e-12 Score=90.51 Aligned_cols=40 Identities=20% Similarity=0.154 Sum_probs=38.5
Q ss_pred HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398 3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~Lrkr 42 (194)
++|+++|.+||++|..||++|||||+++||+||+.+++++
T Consensus 18 ~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 18 ELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999888
No 2
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.10 E-value=5e-11 Score=88.83 Aligned_cols=40 Identities=43% Similarity=0.812 Sum_probs=36.7
Q ss_pred HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398 3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~Lrkr 42 (194)
++|+++|.+||++|+.||++|||||+++|||||+.+++++
T Consensus 65 ~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 65 RIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 5899999999999999999999999999999999998876
No 3
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=5.2e-11 Score=82.67 Aligned_cols=39 Identities=23% Similarity=0.299 Sum_probs=37.4
Q ss_pred HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398 3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~Lrkr 42 (194)
++|+++++++|++|..||+ |+|||+++||+||+.+|++.
T Consensus 18 ~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~ 56 (66)
T 2din_A 18 EKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKA 56 (66)
T ss_dssp HHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChH
Confidence 5899999999999999999 99999999999999999888
No 4
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.08 E-value=7.8e-11 Score=78.02 Aligned_cols=39 Identities=28% Similarity=0.441 Sum_probs=36.4
Q ss_pred HHHHHHHHccCC-CHHHHhccCCCCChHHHHHHHHHhhHh
Q 029398 3 QVLYLINFAPFS-RWSAIAGRLPGRTDNEIKNVWHTHLKK 41 (194)
Q Consensus 3 ~lLi~l~~e~Gn-kWs~IA~~LpGRTdn~IKNrW~~~Lrk 41 (194)
++|++++.+||+ +|..||++|||||+++|++||+.+|+.
T Consensus 12 ~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 12 EKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp HHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 589999999998 999999999999999999999998753
No 5
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.07 E-value=6.3e-11 Score=89.07 Aligned_cols=40 Identities=25% Similarity=0.399 Sum_probs=37.9
Q ss_pred HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398 3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~Lrkr 42 (194)
++|+++|.+||++|+.||++|||||+++|||||+.++++.
T Consensus 62 ~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 62 MLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHHHhhH
Confidence 5899999999999999999999999999999999988776
No 6
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.05 E-value=5.5e-11 Score=85.52 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=33.3
Q ss_pred HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHh
Q 029398 3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTH 38 (194)
Q Consensus 3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~ 38 (194)
++|+++|+++|++|+.||+.| |||+++|||||+.+
T Consensus 32 ~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 32 EKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp HHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 589999999999999999999 99999999999973
No 7
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.05 E-value=5.9e-11 Score=80.86 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=37.4
Q ss_pred HHHHHHHHccC-CCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398 3 QVLYLINFAPF-SRWSAIAGRLPGRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 3 ~lLi~l~~e~G-nkWs~IA~~LpGRTdn~IKNrW~~~Lrkr 42 (194)
++|+++|.+|| ++|..||++|||||+++||+||+.+|+..
T Consensus 17 ~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~ 57 (60)
T 2d9a_A 17 EQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGP 57 (60)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCc
Confidence 58999999999 69999999999999999999999988765
No 8
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.03 E-value=1.2e-10 Score=90.40 Aligned_cols=40 Identities=40% Similarity=0.742 Sum_probs=38.7
Q ss_pred HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398 3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~Lrkr 42 (194)
++|+++|.+||++|+.||++|||||+++|||||+.+|+++
T Consensus 63 ~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~ 102 (131)
T 3zqc_A 63 ETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKR 102 (131)
T ss_dssp HHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999988
No 9
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.02 E-value=1.9e-10 Score=76.29 Aligned_cols=38 Identities=37% Similarity=0.592 Sum_probs=35.5
Q ss_pred HHHHHHHHccCC-CHHHHhccCCCCChHHHHHHHHHhhH
Q 029398 3 QVLYLINFAPFS-RWSAIAGRLPGRTDNEIKNVWHTHLK 40 (194)
Q Consensus 3 ~lLi~l~~e~Gn-kWs~IA~~LpGRTdn~IKNrW~~~Lr 40 (194)
++|++++.+||+ +|..||+.|+|||+++||+||+.+|+
T Consensus 12 ~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1gvd_A 12 QRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50 (52)
T ss_dssp HHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 589999999997 59999999999999999999999875
No 10
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.59 E-value=2.7e-11 Score=89.36 Aligned_cols=40 Identities=23% Similarity=0.198 Sum_probs=37.9
Q ss_pred HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398 3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~Lrkr 42 (194)
++|+++|.+||++|+.||++|||||+++|||||+.+|++.
T Consensus 25 ~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 25 GTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 5799999999999999999999999999999999988876
No 11
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.02 E-value=1.3e-10 Score=89.56 Aligned_cols=40 Identities=40% Similarity=0.805 Sum_probs=37.5
Q ss_pred HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398 3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~Lrkr 42 (194)
++|+++|.+||++|+.||++|||||+++|||||+.+++++
T Consensus 88 ~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 88 RIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp HHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 5899999999999999999999999999999999998876
No 12
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.01 E-value=2e-10 Score=76.63 Aligned_cols=40 Identities=28% Similarity=0.203 Sum_probs=36.6
Q ss_pred HHHHHHHHccC-CCHHHHhccCC--CCChHHHHHHHHHhhHhh
Q 029398 3 QVLYLINFAPF-SRWSAIAGRLP--GRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 3 ~lLi~l~~e~G-nkWs~IA~~Lp--GRTdn~IKNrW~~~Lrkr 42 (194)
++|+++|.+|| ++|+.||..|+ |||+++|++||+.+++.+
T Consensus 11 ~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k 53 (53)
T 1w0t_A 11 KNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53 (53)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence 58999999999 69999999999 999999999999988753
No 13
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.95 E-value=5.2e-10 Score=78.31 Aligned_cols=40 Identities=28% Similarity=0.203 Sum_probs=37.9
Q ss_pred HHHHHHHHccC-CCHHHHhccCC--CCChHHHHHHHHHhhHhh
Q 029398 3 QVLYLINFAPF-SRWSAIAGRLP--GRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 3 ~lLi~l~~e~G-nkWs~IA~~Lp--GRTdn~IKNrW~~~Lrkr 42 (194)
++|+++|.+|| ++|+.||+.|+ |||+++||+||+.+|+..
T Consensus 19 ~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~ 61 (69)
T 1ity_A 19 KNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 61 (69)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCC
Confidence 58999999999 69999999999 999999999999998877
No 14
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.95 E-value=5.7e-10 Score=86.14 Aligned_cols=40 Identities=38% Similarity=0.434 Sum_probs=37.2
Q ss_pred HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398 3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~Lrkr 42 (194)
++|+++|.+||++|+.||++|||||+++||+||+.++++.
T Consensus 71 ~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 71 ALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp HHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 5899999999999999999999999999999999976655
No 15
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.94 E-value=4.7e-10 Score=76.77 Aligned_cols=39 Identities=13% Similarity=0.189 Sum_probs=36.3
Q ss_pred HHHHHHHHccC-CCHHHHhccCCCCChHHHHHHHHHhhHh
Q 029398 3 QVLYLINFAPF-SRWSAIAGRLPGRTDNEIKNVWHTHLKK 41 (194)
Q Consensus 3 ~lLi~l~~e~G-nkWs~IA~~LpGRTdn~IKNrW~~~Lrk 41 (194)
++|++++.+|| ++|..||++|||||+++||+||+.+|..
T Consensus 17 ~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 17 MALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 57999999999 8999999999999999999999988754
No 16
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=3e-10 Score=79.61 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=37.9
Q ss_pred HHHHHHHHccC-CCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398 3 QVLYLINFAPF-SRWSAIAGRLPGRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 3 ~lLi~l~~e~G-nkWs~IA~~LpGRTdn~IKNrW~~~Lrkr 42 (194)
++|+++|.+|| ++|..||++|+|||+++|++||+.+|+..
T Consensus 18 ~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~ 58 (70)
T 2dim_A 18 EILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPS 58 (70)
T ss_dssp HHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCc
Confidence 58999999999 89999999999999999999999998876
No 17
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=9.4e-10 Score=77.91 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=37.6
Q ss_pred HHHHHHHHccC------CCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398 3 QVLYLINFAPF------SRWSAIAGRLPGRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 3 ~lLi~l~~e~G------nkWs~IA~~LpGRTdn~IKNrW~~~Lrkr 42 (194)
++|++++.+|| ++|..||++|+|||+++|++||+.+|++.
T Consensus 17 ~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~ 62 (75)
T 2yum_A 17 KKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKL 62 (75)
T ss_dssp HHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 58999999999 79999999999999999999999888877
No 18
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.84 E-value=1.6e-09 Score=93.47 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=38.5
Q ss_pred HHHHHHHHccCCC------HHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398 3 QVLYLINFAPFSR------WSAIAGRLPGRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 3 ~lLi~l~~e~Gnk------Ws~IA~~LpGRTdn~IKNrW~~~Lrkr 42 (194)
++|+++|+++|++ |..||++|||||+|+|||||+.+|+++
T Consensus 17 ~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ 62 (246)
T 1ign_A 17 EFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKR 62 (246)
T ss_dssp HHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhh
Confidence 6899999999986 999999999999999999999999998
No 19
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=98.79 E-value=3.3e-09 Score=72.25 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=34.5
Q ss_pred HHHHHHHHccC-CCHHHHhccCC-CCChHHHHHHHHHhh
Q 029398 3 QVLYLINFAPF-SRWSAIAGRLP-GRTDNEIKNVWHTHL 39 (194)
Q Consensus 3 ~lLi~l~~e~G-nkWs~IA~~Lp-GRTdn~IKNrW~~~L 39 (194)
++|++++.+|| .+|..||++++ |||+++|++||+.++
T Consensus 18 ~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 18 LLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 58999999999 89999999999 999999999998754
No 20
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.78 E-value=3e-09 Score=76.37 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=34.9
Q ss_pred HHHHHHHHccC----CCHHHHhccCCCCChHHHHHHHHHhhH
Q 029398 3 QVLYLINFAPF----SRWSAIAGRLPGRTDNEIKNVWHTHLK 40 (194)
Q Consensus 3 ~lLi~l~~e~G----nkWs~IA~~LpGRTdn~IKNrW~~~Lr 40 (194)
++|++++++|| ++|..||++|||||+++||+||+.+++
T Consensus 27 ~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 27 KLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 57889999999 899999999999999999999998653
No 21
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.74 E-value=7.3e-09 Score=72.21 Aligned_cols=40 Identities=25% Similarity=0.283 Sum_probs=35.7
Q ss_pred HHHHHHHHccC-CCHHHHhccCC--CCChHHHHHHHHHhhHhh
Q 029398 3 QVLYLINFAPF-SRWSAIAGRLP--GRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 3 ~lLi~l~~e~G-nkWs~IA~~Lp--GRTdn~IKNrW~~~Lrkr 42 (194)
++|+++|.+|| .+|+.||+.+| |||+.+||+||+.+++..
T Consensus 20 ~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 20 EWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence 58999999999 58999999866 999999999999977654
No 22
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.73 E-value=8.4e-09 Score=75.69 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=37.0
Q ss_pred HHHHHHHHccCC-CHHHHhcc----CCCCChHHHHHHHHHhhHhh
Q 029398 3 QVLYLINFAPFS-RWSAIAGR----LPGRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 3 ~lLi~l~~e~Gn-kWs~IA~~----LpGRTdn~IKNrW~~~Lrkr 42 (194)
++|++++++||+ +|+.|++. |+|||+++||+||+.++++.
T Consensus 9 ~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 9 EALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 689999999998 99999996 89999999999999988765
No 23
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.61 E-value=3.4e-08 Score=69.28 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=35.7
Q ss_pred HHHHHHHHccCCCHHHHh---ccCCCCChHHHHHHHHHhhHh
Q 029398 3 QVLYLINFAPFSRWSAIA---GRLPGRTDNEIKNVWHTHLKK 41 (194)
Q Consensus 3 ~lLi~l~~e~GnkWs~IA---~~LpGRTdn~IKNrW~~~Lrk 41 (194)
+.|++.|++||.+|+.|+ ..|+|||+..||++|+.++|+
T Consensus 17 ~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 17 NYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp HHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 679999999999999999 688999999999999996654
No 24
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.58 E-value=3.7e-08 Score=73.65 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=35.4
Q ss_pred HHHHHHHHccC----CCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398 3 QVLYLINFAPF----SRWSAIAGRLPGRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 3 ~lLi~l~~e~G----nkWs~IA~~LpGRTdn~IKNrW~~~Lrkr 42 (194)
++|++++++|| ++|..||++|||||+++||+||+.+++..
T Consensus 17 ~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 17 KAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp HHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 47888999996 89999999999999999999999976543
No 25
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.51 E-value=3.7e-08 Score=71.37 Aligned_cols=36 Identities=14% Similarity=0.108 Sum_probs=34.2
Q ss_pred HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHh
Q 029398 3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTH 38 (194)
Q Consensus 3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~ 38 (194)
++|++++.+||.+|..||++++|||+.+|++||+.+
T Consensus 27 ~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 27 LLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp HHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 589999999999999999999999999999999875
No 26
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.48 E-value=7.9e-08 Score=75.18 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=36.6
Q ss_pred HHHHHHHHccCC-CHHHHhcc----CCCCChHHHHHHHHHhhHhh
Q 029398 3 QVLYLINFAPFS-RWSAIAGR----LPGRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 3 ~lLi~l~~e~Gn-kWs~IA~~----LpGRTdn~IKNrW~~~Lrkr 42 (194)
++|+++|++||+ +|+.|++. |+|||+++||+||+.++++.
T Consensus 26 ~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 26 EALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp HHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 689999999998 99999998 49999999999999988754
No 27
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.42 E-value=2e-07 Score=71.21 Aligned_cols=40 Identities=20% Similarity=0.251 Sum_probs=36.5
Q ss_pred HHHHHHHHccCC-CHHHHhccC----CCCChHHHHHHHHHhhHhh
Q 029398 3 QVLYLINFAPFS-RWSAIAGRL----PGRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 3 ~lLi~l~~e~Gn-kWs~IA~~L----pGRTdn~IKNrW~~~Lrkr 42 (194)
++|++.|.+||+ +|+.|++.+ +|||+++||+||+.++++.
T Consensus 22 ~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 22 EALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp HHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 689999999997 999999965 8999999999999987655
No 28
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.42 E-value=1.8e-07 Score=69.38 Aligned_cols=40 Identities=33% Similarity=0.549 Sum_probs=36.3
Q ss_pred HHHHHHHHccCC-CHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398 3 QVLYLINFAPFS-RWSAIAGRLPGRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 3 ~lLi~l~~e~Gn-kWs~IA~~LpGRTdn~IKNrW~~~Lrkr 42 (194)
++|++++.+||. +|..||+.|||||+.+|+.||+.+|...
T Consensus 13 ~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~ 53 (105)
T 1gv2_A 13 QRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 53 (105)
T ss_dssp HHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCc
Confidence 589999999997 6999999999999999999999987543
No 29
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.42 E-value=1.7e-07 Score=72.22 Aligned_cols=40 Identities=23% Similarity=0.404 Sum_probs=37.3
Q ss_pred HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398 3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~Lrkr 42 (194)
++|++++.+||.+|..||+.||||++.+|+.||+.+|...
T Consensus 20 ~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~ 59 (126)
T 3osg_A 20 EMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPS 59 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccc
Confidence 6899999999999999999999999999999999987654
No 30
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.39 E-value=1.6e-07 Score=74.50 Aligned_cols=40 Identities=33% Similarity=0.549 Sum_probs=36.7
Q ss_pred HHHHHHHHccCC-CHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398 3 QVLYLINFAPFS-RWSAIAGRLPGRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 3 ~lLi~l~~e~Gn-kWs~IA~~LpGRTdn~IKNrW~~~Lrkr 42 (194)
++|+++|.+||+ +|..||+.|||||+++|++||+.+|...
T Consensus 67 ~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~ 107 (159)
T 1h89_C 67 QRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 107 (159)
T ss_dssp HHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 589999999996 6999999999999999999999988654
No 31
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.38 E-value=2.3e-07 Score=71.35 Aligned_cols=40 Identities=33% Similarity=0.498 Sum_probs=36.5
Q ss_pred HHHHHHHHccCC-CHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398 3 QVLYLINFAPFS-RWSAIAGRLPGRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 3 ~lLi~l~~e~Gn-kWs~IA~~LpGRTdn~IKNrW~~~Lrkr 42 (194)
++|++++.+||. +|..||..|||||+++|++||+.+|...
T Consensus 36 ~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~ 76 (128)
T 1h8a_C 36 QRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPE 76 (128)
T ss_dssp HHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccc
Confidence 589999999996 6999999999999999999999987654
No 32
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.29 E-value=4.4e-07 Score=67.92 Aligned_cols=40 Identities=13% Similarity=0.232 Sum_probs=36.7
Q ss_pred HHHHHHHHccCC-CHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398 3 QVLYLINFAPFS-RWSAIAGRLPGRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 3 ~lLi~l~~e~Gn-kWs~IA~~LpGRTdn~IKNrW~~~Lrkr 42 (194)
++|++++.+||. +|..||..|||||+.+|+.||+.+|...
T Consensus 10 ~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~ 50 (107)
T 2k9n_A 10 LKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPA 50 (107)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHccc
Confidence 589999999996 8999999999999999999999987654
No 33
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.29 E-value=4.4e-07 Score=71.01 Aligned_cols=40 Identities=23% Similarity=0.324 Sum_probs=36.3
Q ss_pred HHHHHHHHccCC-CHHHHhcc----CCCCChHHHHHHHHHhhHhh
Q 029398 3 QVLYLINFAPFS-RWSAIAGR----LPGRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 3 ~lLi~l~~e~Gn-kWs~IA~~----LpGRTdn~IKNrW~~~Lrkr 42 (194)
++|+++|++||. +|+.|++. |+|||+++||+||+.++++.
T Consensus 40 ~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 40 ELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp HHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 689999999997 99999997 49999999999999987655
No 34
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.16 E-value=9.9e-07 Score=68.18 Aligned_cols=40 Identities=20% Similarity=0.414 Sum_probs=36.7
Q ss_pred HHHHHHHHccC-CCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398 3 QVLYLINFAPF-SRWSAIAGRLPGRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 3 ~lLi~l~~e~G-nkWs~IA~~LpGRTdn~IKNrW~~~Lrkr 42 (194)
++|++++.+|| ..|..||..|||||+.+|+.||+.+|...
T Consensus 11 ~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~ 51 (131)
T 3zqc_A 11 DLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPA 51 (131)
T ss_dssp HHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCcc
Confidence 58999999999 68999999999999999999999988654
No 35
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=1.8e-06 Score=59.20 Aligned_cols=37 Identities=8% Similarity=-0.029 Sum_probs=34.2
Q ss_pred HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhh
Q 029398 3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHL 39 (194)
Q Consensus 3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~L 39 (194)
+++++++.+||.+|..||..|||||..+|+++|+...
T Consensus 21 ~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 21 EIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp HHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 5788999999999999999999999999999998753
No 36
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.82 E-value=2.5e-05 Score=58.48 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=36.8
Q ss_pred HHHHHHHHccCCCHHHHhccC-----CCCChHHHHHHHHHhhHhh
Q 029398 3 QVLYLINFAPFSRWSAIAGRL-----PGRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 3 ~lLi~l~~e~GnkWs~IA~~L-----pGRTdn~IKNrW~~~Lrkr 42 (194)
+.|++|+.+||.||..|+.++ ++||...||+||+...++.
T Consensus 39 d~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l 83 (93)
T 3hm5_A 39 DHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKL 83 (93)
T ss_dssp HHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHH
Confidence 579999999999999999999 5899999999999977666
No 37
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.76 E-value=1.2e-05 Score=69.10 Aligned_cols=39 Identities=10% Similarity=0.048 Sum_probs=36.0
Q ss_pred HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhhHh
Q 029398 3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKK 41 (194)
Q Consensus 3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~Lrk 41 (194)
+++++++.+||+.|..||+.++|||.++||++|+.+.++
T Consensus 142 ~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 142 LLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999987655
No 38
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.74 E-value=1.7e-05 Score=56.52 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=32.2
Q ss_pred HHHHHHHHccC----CCHHHHhccCCCCChHHHHHHHHHhh
Q 029398 3 QVLYLINFAPF----SRWSAIAGRLPGRTDNEIKNVWHTHL 39 (194)
Q Consensus 3 ~lLi~l~~e~G----nkWs~IA~~LpGRTdn~IKNrW~~~L 39 (194)
++|.++++.|+ .||..||+++ |||.++|++||+.++
T Consensus 17 k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~ 56 (72)
T 2cqq_A 17 SQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK 56 (72)
T ss_dssp HHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 57888899997 7899999998 999999999999854
No 39
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=97.70 E-value=6e-06 Score=65.39 Aligned_cols=40 Identities=28% Similarity=0.432 Sum_probs=11.0
Q ss_pred HHHHHHHHccC-CCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398 3 QVLYLINFAPF-SRWSAIAGRLPGRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 3 ~lLi~l~~e~G-nkWs~IA~~LpGRTdn~IKNrW~~~Lrkr 42 (194)
++|++++.+|| .+|..||..||||++.+|+.||..+|...
T Consensus 15 ~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~ 55 (159)
T 1h89_C 15 EKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 55 (159)
T ss_dssp ----------------------------CHHHHHHTTTCTT
T ss_pred HHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCC
Confidence 57899999999 58999999999999999999999887643
No 40
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.73 E-value=0.00073 Score=48.44 Aligned_cols=40 Identities=20% Similarity=0.211 Sum_probs=32.7
Q ss_pred HHHHHHHHccC----CCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398 3 QVLYLINFAPF----SRWSAIAGRLPGRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 3 ~lLi~l~~e~G----nkWs~IA~~LpGRTdn~IKNrW~~~Lrkr 42 (194)
.+|.++...|+ .+|..||..+||||..+|+.||..+++.+
T Consensus 17 k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~ 60 (73)
T 1wgx_A 17 QKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGK 60 (73)
T ss_dssp HHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSS
T ss_pred HHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 35566667776 57999999999999999999999875544
No 41
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.16 E-value=0.0043 Score=46.54 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=33.7
Q ss_pred HHHHHHHHccCC---CHHHHhccCCCCChHHHHHHHHHhhH
Q 029398 3 QVLYLINFAPFS---RWSAIAGRLPGRTDNEIKNVWHTHLK 40 (194)
Q Consensus 3 ~lLi~l~~e~Gn---kWs~IA~~LpGRTdn~IKNrW~~~Lr 40 (194)
+.|+...++-|. .|+.||+.|..|+.++|++|++.+++
T Consensus 42 R~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~ 82 (95)
T 1ug2_A 42 RVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQ 82 (95)
T ss_dssp HHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 467888899997 89999999999999999999998653
No 42
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=96.11 E-value=0.0046 Score=42.15 Aligned_cols=38 Identities=16% Similarity=0.248 Sum_probs=33.5
Q ss_pred HHHHHHHHcc--------CCC-HHHHhc-cCCCCChHHHHHHHHHhhH
Q 029398 3 QVLYLINFAP--------FSR-WSAIAG-RLPGRTDNEIKNVWHTHLK 40 (194)
Q Consensus 3 ~lLi~l~~e~--------Gnk-Ws~IA~-~LpGRTdn~IKNrW~~~Lr 40 (194)
++|++.+.++ ||+ |..+|. .+|+||-.++|+||...|+
T Consensus 11 ~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 11 VAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp HHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred HHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5788999888 755 999999 8999999999999998764
No 43
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=94.79 E-value=0.0015 Score=46.53 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=32.5
Q ss_pred HHHHHHHHccCC---CHHHHhccCCCCChHHHHHHHHHhhH
Q 029398 3 QVLYLINFAPFS---RWSAIAGRLPGRTDNEIKNVWHTHLK 40 (194)
Q Consensus 3 ~lLi~l~~e~Gn---kWs~IA~~LpGRTdn~IKNrW~~~Lr 40 (194)
+.|+..+++-|. .|+.||+.| +|+.++|++|++.+++
T Consensus 23 R~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 23 RVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 457778889998 899999999 9999999999998653
No 44
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.58 E-value=0.022 Score=42.58 Aligned_cols=40 Identities=18% Similarity=0.148 Sum_probs=35.9
Q ss_pred HHHHHHHHccCCCHHHHhccCC-----CCChHHHHHHHHHhhHhh
Q 029398 3 QVLYLINFAPFSRWSAIAGRLP-----GRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 3 ~lLi~l~~e~GnkWs~IA~~Lp-----GRTdn~IKNrW~~~Lrkr 42 (194)
..|++|.++|+-||..|+.++. .||-..+|.||+...++-
T Consensus 39 d~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l 83 (93)
T 4iej_A 39 DHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKL 83 (93)
T ss_dssp HHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHH
Confidence 4689999999999999999984 799999999999976665
No 45
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=93.92 E-value=0.016 Score=41.75 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=26.6
Q ss_pred HHHHHHHccC----CCHHHHhccCCCCChHHHHHHHHH
Q 029398 4 VLYLINFAPF----SRWSAIAGRLPGRTDNEIKNVWHT 37 (194)
Q Consensus 4 lLi~l~~e~G----nkWs~IA~~LpGRTdn~IKNrW~~ 37 (194)
++.++-+.|+ .||.+||+.+||||..+|+.++..
T Consensus 30 ~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~~ 67 (74)
T 4eef_G 30 AFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYEL 67 (74)
T ss_dssp HHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC-
T ss_pred HHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3444555566 489999999999999999998764
No 46
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=93.09 E-value=0.049 Score=46.99 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=26.2
Q ss_pred CHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398 15 RWSAIAGRLPGRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 15 kWs~IA~~LpGRTdn~IKNrW~~~Lrkr 42 (194)
.|..||+.+|+||++++|+||...|++.
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 7999999999999999999999888765
No 47
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=92.94 E-value=0.13 Score=37.89 Aligned_cols=36 Identities=14% Similarity=-0.009 Sum_probs=32.1
Q ss_pred HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHh
Q 029398 3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTH 38 (194)
Q Consensus 3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~ 38 (194)
++..+.+..||..|..||..||+||..+|-..+...
T Consensus 52 ~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 52 ETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp HHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 466788999999999999999999999999988763
No 48
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.57 E-value=0.26 Score=33.50 Aligned_cols=36 Identities=11% Similarity=-0.008 Sum_probs=31.0
Q ss_pred HHHHHHHHccCCCHHHHhc-cCCCCChHHHHHHHHHh
Q 029398 3 QVLYLINFAPFSRWSAIAG-RLPGRTDNEIKNVWHTH 38 (194)
Q Consensus 3 ~lLi~l~~e~GnkWs~IA~-~LpGRTdn~IKNrW~~~ 38 (194)
++-.+.+.+||..|..|++ .|++||-.+|...+...
T Consensus 18 ~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 18 KRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp HHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence 3556788999999999999 59999999999988753
No 49
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=91.53 E-value=0.1 Score=48.86 Aligned_cols=36 Identities=11% Similarity=0.023 Sum_probs=33.0
Q ss_pred HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHh
Q 029398 3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTH 38 (194)
Q Consensus 3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~ 38 (194)
+++++.+.+||..|..||..+..||..+||++|..+
T Consensus 389 ~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 389 LLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNY 424 (482)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 467889999999999999999999999999999864
No 50
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=88.93 E-value=0.19 Score=35.54 Aligned_cols=40 Identities=18% Similarity=0.368 Sum_probs=29.6
Q ss_pred HHHHHHHHccC----------CCHHHHhccCC----CCChHHHHHHHHHhhHhh
Q 029398 3 QVLYLINFAPF----------SRWSAIAGRLP----GRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 3 ~lLi~l~~e~G----------nkWs~IA~~Lp----GRTdn~IKNrW~~~Lrkr 42 (194)
.+||+++.++. ..|..||..|. .||+.+|+.+|..+.+..
T Consensus 13 ~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 13 RSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp HHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 35666665533 25999999873 799999999999954443
No 51
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=87.97 E-value=0.7 Score=32.01 Aligned_cols=35 Identities=11% Similarity=-0.053 Sum_probs=30.6
Q ss_pred HHHHHHHHccCCCHHHHhc-cCCCCChHHHHHHHHH
Q 029398 3 QVLYLINFAPFSRWSAIAG-RLPGRTDNEIKNVWHT 37 (194)
Q Consensus 3 ~lLi~l~~e~GnkWs~IA~-~LpGRTdn~IKNrW~~ 37 (194)
++-.+.+..||..|..|++ .||+||-.+|...+..
T Consensus 17 ~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 17 CLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp HHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 3456788999999999999 5999999999999875
No 52
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=76.83 E-value=4.6 Score=27.92 Aligned_cols=46 Identities=15% Similarity=0.120 Sum_probs=35.3
Q ss_pred HHHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhhHhhHHHHHHhc
Q 029398 3 QVLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKKAAAVLKQN 50 (194)
Q Consensus 3 ~lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~Lrkr~~~~lk~~ 50 (194)
+.++.++-..|-....||..| |-+...||.+.+. .++++++.++..
T Consensus 43 r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~r-a~~~Lr~~l~~~ 88 (92)
T 3hug_A 43 RAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHY-AVRALRLTLQEL 88 (92)
T ss_dssp HHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHH-HHHHHHHHHHHh
Confidence 346667777899999999999 9999999998877 456655555543
No 53
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=73.06 E-value=4.4 Score=32.42 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=32.9
Q ss_pred hHHHHHHHHccC---CCHHHHhc--cCCCCChHHHHHHHHHhhH
Q 029398 2 FQVLYLINFAPF---SRWSAIAG--RLPGRTDNEIKNVWHTHLK 40 (194)
Q Consensus 2 ~~lLi~l~~e~G---nkWs~IA~--~LpGRTdn~IKNrW~~~Lr 40 (194)
|+.+++.+..|| .+|..|+. .|++++...|+......+.
T Consensus 15 ~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~ 58 (211)
T 4b4c_A 15 IRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHN 58 (211)
T ss_dssp HHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 578999999999 68999985 5899999999987776543
No 54
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=61.88 E-value=9.7 Score=33.47 Aligned_cols=38 Identities=18% Similarity=0.107 Sum_probs=32.9
Q ss_pred hHHHHHHHHccC-CCHHHHhccCCCCChHHHHHHHHHhh
Q 029398 2 FQVLYLINFAPF-SRWSAIAGRLPGRTDNEIKNVWHTHL 39 (194)
Q Consensus 2 ~~lLi~l~~e~G-nkWs~IA~~LpGRTdn~IKNrW~~~L 39 (194)
|+..+.+...|| ..|..||..++|.|...|+.+.....
T Consensus 118 f~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw 156 (304)
T 1ofc_X 118 FNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFW 156 (304)
T ss_dssp HHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 677889999999 68999999999999999988755543
No 55
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=58.42 E-value=7.2 Score=29.03 Aligned_cols=39 Identities=21% Similarity=0.311 Sum_probs=29.7
Q ss_pred HHHHHHHccC--------CCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398 4 VLYLINFAPF--------SRWSAIAGRLPGRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 4 lLi~l~~e~G--------nkWs~IA~~LpGRTdn~IKNrW~~~Lrkr 42 (194)
.|..+|.+.| ++|..||..|.-..+..+|.+|..+|-.-
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 4566667676 68999999984444888999999877654
No 56
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=51.90 E-value=17 Score=26.29 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=26.9
Q ss_pred HHHHHHHccC--------CCHHHHhccCCCCC----hHHHHHHHHHhhHhh
Q 029398 4 VLYLINFAPF--------SRWSAIAGRLPGRT----DNEIKNVWHTHLKKK 42 (194)
Q Consensus 4 lLi~l~~e~G--------nkWs~IA~~LpGRT----dn~IKNrW~~~Lrkr 42 (194)
.|..++.+.| ++|..||..|.-.. ...+|.+|..+|-.-
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 4566666666 68999999994322 356888887776543
No 57
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=51.81 E-value=19 Score=22.70 Aligned_cols=37 Identities=11% Similarity=-0.001 Sum_probs=29.1
Q ss_pred HHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398 4 VLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 4 lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~Lrkr 42 (194)
.++.++-..|-.+..||..+ |-+...|+++.+. .+++
T Consensus 22 ~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~r-a~~~ 58 (70)
T 2o8x_A 22 EALLLTQLLGLSYADAAAVC-GCPVGTIRSRVAR-ARDA 58 (70)
T ss_dssp HHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHH-HHHH
Confidence 45566667899999999999 8999999987665 3444
No 58
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=49.02 E-value=9.2 Score=29.03 Aligned_cols=39 Identities=21% Similarity=0.311 Sum_probs=30.1
Q ss_pred HHHHHHHccC--------CCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398 4 VLYLINFAPF--------SRWSAIAGRLPGRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 4 lLi~l~~e~G--------nkWs~IA~~LpGRTdn~IKNrW~~~Lrkr 42 (194)
.|..+|.+.| ++|..||..|.-..+..+|..|..+|-.-
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 98 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 4666777777 47999999884444889999999888765
No 59
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=48.57 E-value=18 Score=26.90 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=28.1
Q ss_pred HHHHHHHccC--------CCHHHHhccCCCCC----hHHHHHHHHHhhHhh
Q 029398 4 VLYLINFAPF--------SRWSAIAGRLPGRT----DNEIKNVWHTHLKKK 42 (194)
Q Consensus 4 lLi~l~~e~G--------nkWs~IA~~LpGRT----dn~IKNrW~~~Lrkr 42 (194)
.|..+|.+.| ++|..||..|.-.. ...+|.+|..+|-.-
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 4666777777 68999999983222 456899888877654
No 60
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=47.92 E-value=19 Score=26.96 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=27.9
Q ss_pred HHHHHHHccC--------CCHHHHhccCCCCC----hHHHHHHHHHhhHhh
Q 029398 4 VLYLINFAPF--------SRWSAIAGRLPGRT----DNEIKNVWHTHLKKK 42 (194)
Q Consensus 4 lLi~l~~e~G--------nkWs~IA~~LpGRT----dn~IKNrW~~~Lrkr 42 (194)
.|..+|.++| ++|..||..|.--+ ...+|.+|..+|..-
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~y 105 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF 105 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 4566666666 68999999984322 457888888877665
No 61
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=45.82 E-value=22 Score=26.65 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=27.5
Q ss_pred HHHHHHHccC--------CCHHHHhccCCCCC----hHHHHHHHHHhhHhh
Q 029398 4 VLYLINFAPF--------SRWSAIAGRLPGRT----DNEIKNVWHTHLKKK 42 (194)
Q Consensus 4 lLi~l~~e~G--------nkWs~IA~~LpGRT----dn~IKNrW~~~Lrkr 42 (194)
.|..+|.+.| ++|..||..|.-.. ...+|.+|..+|-.-
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 4566666666 68999999993222 357888888777654
No 62
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=45.57 E-value=27 Score=22.76 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=27.1
Q ss_pred HHHHHHc----cCCCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398 5 LYLINFA----PFSRWSAIAGRLPGRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 5 Li~l~~e----~GnkWs~IA~~LpGRTdn~IKNrW~~~Lrkr 42 (194)
++.++-. -|-.|..||..+ |-+...|+.+.+.. +++
T Consensus 18 il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra-~~k 57 (73)
T 1ku3_A 18 VLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKA-LRK 57 (73)
T ss_dssp HHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHH-HHH
T ss_pred HHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHH-HHH
Confidence 4444444 688999999998 99999999976653 344
No 63
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=42.83 E-value=60 Score=23.49 Aligned_cols=40 Identities=8% Similarity=-0.022 Sum_probs=30.9
Q ss_pred HHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhhHhhHHH
Q 029398 4 VLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKKAAA 45 (194)
Q Consensus 4 lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~Lrkr~~~ 45 (194)
.++.++-..|-....||..| |-+...|+.+.+. .++++++
T Consensus 32 ~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~r-a~~kLr~ 71 (113)
T 1xsv_A 32 NYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRR-TGDLVED 71 (113)
T ss_dssp HHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHH-HHHHHHH
Confidence 35566667899999999999 9999999998776 3455443
No 64
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=42.56 E-value=28 Score=22.37 Aligned_cols=27 Identities=7% Similarity=0.064 Sum_probs=23.3
Q ss_pred ccCCCHHHHhccCCCCChHHHHHHHHHh
Q 029398 11 APFSRWSAIAGRLPGRTDNEIKNVWHTH 38 (194)
Q Consensus 11 e~GnkWs~IA~~LpGRTdn~IKNrW~~~ 38 (194)
.-|-.+..||..+ |-+...|+.+.+..
T Consensus 23 ~~g~s~~eIA~~l-gis~~tV~~~~~ra 49 (68)
T 2p7v_B 23 NTDYTLEEVGKQF-DVTRERIRQIEAKA 49 (68)
T ss_dssp SSCCCHHHHHHHH-TCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHH-CcCHHHHHHHHHHH
Confidence 3589999999999 99999999987764
No 65
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=41.73 E-value=19 Score=26.14 Aligned_cols=39 Identities=8% Similarity=0.089 Sum_probs=28.4
Q ss_pred HHHHHHHccC--------CCHHHHhccCC--CC---ChHHHHHHHHHhhHhh
Q 029398 4 VLYLINFAPF--------SRWSAIAGRLP--GR---TDNEIKNVWHTHLKKK 42 (194)
Q Consensus 4 lLi~l~~e~G--------nkWs~IA~~Lp--GR---Tdn~IKNrW~~~Lrkr 42 (194)
.|..+|.++| ++|..||..|. .. ....+|.+|..+|..-
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~y 88 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPY 88 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 4666677777 68999999883 21 2357999999888765
No 66
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=41.57 E-value=26 Score=26.50 Aligned_cols=38 Identities=13% Similarity=0.273 Sum_probs=27.7
Q ss_pred HHHHHHHccC--------CCHHHHhccC--CCCC---hHHHHHHHHHhhHh
Q 029398 4 VLYLINFAPF--------SRWSAIAGRL--PGRT---DNEIKNVWHTHLKK 41 (194)
Q Consensus 4 lLi~l~~e~G--------nkWs~IA~~L--pGRT---dn~IKNrW~~~Lrk 41 (194)
.|..+|.++| ++|..||..| |... ...+|.+|..+|-.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~ 96 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS 96 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH
Confidence 5677777787 7899999998 3222 35688888876654
No 67
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=38.47 E-value=31 Score=26.61 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=28.1
Q ss_pred HHHHHHHccC--------CCHHHHhccCC--CC---ChHHHHHHHHHhhHhh
Q 029398 4 VLYLINFAPF--------SRWSAIAGRLP--GR---TDNEIKNVWHTHLKKK 42 (194)
Q Consensus 4 lLi~l~~e~G--------nkWs~IA~~Lp--GR---Tdn~IKNrW~~~Lrkr 42 (194)
.|..+|.+.| ++|..||..|. .. ....+|..|..+|-.-
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~y 119 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPY 119 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 4666677776 68999999983 32 2457999888877654
No 68
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=37.66 E-value=15 Score=26.16 Aligned_cols=38 Identities=21% Similarity=0.223 Sum_probs=24.9
Q ss_pred HHHHHHHccC--------CCHHHHhccCCCCC----hHHHHHHHHHhhHh
Q 029398 4 VLYLINFAPF--------SRWSAIAGRLPGRT----DNEIKNVWHTHLKK 41 (194)
Q Consensus 4 lLi~l~~e~G--------nkWs~IA~~LpGRT----dn~IKNrW~~~Lrk 41 (194)
.|..++.+.| ++|..||..|.-.. ...+|++|..+|..
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 3555566665 68999999883211 45688877766643
No 69
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=35.55 E-value=37 Score=25.44 Aligned_cols=39 Identities=21% Similarity=0.213 Sum_probs=28.6
Q ss_pred HHHHHHHccC--------CCHHHHhccCC--CC-C--hHHHHHHHHHhhHhh
Q 029398 4 VLYLINFAPF--------SRWSAIAGRLP--GR-T--DNEIKNVWHTHLKKK 42 (194)
Q Consensus 4 lLi~l~~e~G--------nkWs~IA~~Lp--GR-T--dn~IKNrW~~~Lrkr 42 (194)
.|..+|.++| ++|..||..|. .. + ...+|.+|..+|..-
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~y 107 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPY 107 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 4666777777 68999999983 22 2 467999998877654
No 70
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=34.87 E-value=8.1 Score=36.07 Aligned_cols=35 Identities=9% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHh
Q 029398 4 VLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTH 38 (194)
Q Consensus 4 lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~ 38 (194)
+..+.+..||..|..|+++||+|+-.+|-.+|+..
T Consensus 199 lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yYY~W 233 (482)
T 2xag_B 199 LFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSW 233 (482)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHcCccHHHHHHHcCCCCHHHHHHHhccc
Confidence 34567888999999999999999999998886653
No 71
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=33.21 E-value=24 Score=26.24 Aligned_cols=37 Identities=8% Similarity=-0.098 Sum_probs=29.1
Q ss_pred HHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398 4 VLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 4 lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~Lrkr 42 (194)
.++.++...|-....||..| |-+.+.||++-+. .+++
T Consensus 100 ~vl~L~~~~g~s~~EIA~~l-gis~~tV~~~l~r-ar~~ 136 (157)
T 2lfw_A 100 QALLLTAMEGFSPEDAAYLI-EVDTSEVETLVTE-ALAE 136 (157)
T ss_dssp HHHTTTSSSCCCHHHHHHTT-TSCHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHH-HHHH
Confidence 45556666788999999999 9999999998766 3455
No 72
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=32.75 E-value=38 Score=24.60 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=23.7
Q ss_pred HHHHHHHccCCCHHHHhccCCCCChHHHHHH
Q 029398 4 VLYLINFAPFSRWSAIAGRLPGRTDNEIKNV 34 (194)
Q Consensus 4 lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNr 34 (194)
.|..+...+|..|..+|+.| |=++..|.+.
T Consensus 20 ~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~I 49 (111)
T 2yqf_A 20 KMAVISEHLGLSWAELAREL-QFSVEDINRI 49 (111)
T ss_dssp HHHHHHHHHTTTHHHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHHHH
Confidence 34556688899999999999 8888776653
No 73
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=31.78 E-value=76 Score=20.39 Aligned_cols=32 Identities=9% Similarity=-0.127 Sum_probs=25.3
Q ss_pred HHHHHHccCCCHHHHhccCCCCChHHHHHHHHHh
Q 029398 5 LYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTH 38 (194)
Q Consensus 5 Li~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~ 38 (194)
++.++ ..|-....||..| |-+...|+.+.+..
T Consensus 24 vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~ 55 (79)
T 1x3u_A 24 VLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANV 55 (79)
T ss_dssp HHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred HHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHH
Confidence 44455 6788999999999 88999999877653
No 74
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=31.47 E-value=49 Score=24.57 Aligned_cols=30 Identities=13% Similarity=0.222 Sum_probs=24.2
Q ss_pred HHHHHHHccCCCHHHHhccCCCCChHHHHHH
Q 029398 4 VLYLINFAPFSRWSAIAGRLPGRTDNEIKNV 34 (194)
Q Consensus 4 lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNr 34 (194)
.|..+...+|..|..+|+.| |=++..|...
T Consensus 26 ~l~~Ia~~lG~~Wk~LAR~L-Glse~dId~I 55 (114)
T 2of5_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIYRC 55 (114)
T ss_dssp HHHHHHHTCCSTHHHHHHTT-TCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHHHH
Confidence 35567889999999999999 7777776654
No 75
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=31.08 E-value=47 Score=24.47 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=24.6
Q ss_pred HHHHHHHccCCCHHHHhccCCCCChHHHHHH
Q 029398 4 VLYLINFAPFSRWSAIAGRLPGRTDNEIKNV 34 (194)
Q Consensus 4 lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNr 34 (194)
.|..+...+|..|..+|+.| |=++..|...
T Consensus 15 ~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~I 44 (118)
T 2of5_H 15 NLLSVAGRLGLDWPAVALHL-GVSYREVQRI 44 (118)
T ss_dssp HHHHHHHTCCTTHHHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHc-CCCHHHHHHH
Confidence 56678899999999999999 7777776553
No 76
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=31.02 E-value=48 Score=24.04 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=23.4
Q ss_pred HHHHHHHccCCCHHHHhccCCCCChHHHHH
Q 029398 4 VLYLINFAPFSRWSAIAGRLPGRTDNEIKN 33 (194)
Q Consensus 4 lLi~l~~e~GnkWs~IA~~LpGRTdn~IKN 33 (194)
.|..+...+|..|..+|++| |=++..|.+
T Consensus 20 ~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 20 QIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 45566778899999999999 777777765
No 77
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=28.92 E-value=52 Score=24.45 Aligned_cols=30 Identities=13% Similarity=0.222 Sum_probs=23.9
Q ss_pred HHHHHHHccCCCHHHHhccCCCCChHHHHHH
Q 029398 4 VLYLINFAPFSRWSAIAGRLPGRTDNEIKNV 34 (194)
Q Consensus 4 lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNr 34 (194)
.|..+...+|..|..+|+.| |=++..|...
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dId~I 55 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIYRC 55 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHHHH
Confidence 35566788999999999999 7777776554
No 78
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=28.49 E-value=68 Score=22.25 Aligned_cols=34 Identities=12% Similarity=-0.067 Sum_probs=27.0
Q ss_pred HHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhhH
Q 029398 5 LYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLK 40 (194)
Q Consensus 5 Li~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~Lr 40 (194)
++.++. -|-.-..||..| |-+.+.|+++....++
T Consensus 37 Vl~l~~-~G~s~~eIA~~L-~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 37 ILQEVE-KGFTNQEIADAL-HLSKRSIEYSLTSIFN 70 (90)
T ss_dssp HHHHHH-TTCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHH-cCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 344444 799999999999 9999999998887443
No 79
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=28.19 E-value=1e+02 Score=22.36 Aligned_cols=40 Identities=13% Similarity=0.108 Sum_probs=30.3
Q ss_pred HHHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhhHhhHHH
Q 029398 4 VLYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKKAAA 45 (194)
Q Consensus 4 lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~Lrkr~~~ 45 (194)
.++.++-..|-....||..+ |-+...|+.+.+.. ++++++
T Consensus 29 ~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra-~~kLr~ 68 (113)
T 1s7o_A 29 NYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRT-EKILET 68 (113)
T ss_dssp HHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHH-HHHHHH
Confidence 34556666789999999999 99999999987763 455443
No 80
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=27.53 E-value=70 Score=21.47 Aligned_cols=32 Identities=22% Similarity=0.073 Sum_probs=25.8
Q ss_pred HHHHHHccCCCHHHHhccCCCCChHHHHHHHHHh
Q 029398 5 LYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTH 38 (194)
Q Consensus 5 Li~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~ 38 (194)
++.++ ..|-....||..| |-+...|+++.+..
T Consensus 29 vl~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~ 60 (82)
T 1je8_A 29 ILKLI-AQGLPNKMIARRL-DITESTVKVHVKHM 60 (82)
T ss_dssp HHHHH-TTTCCHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred HHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHH
Confidence 44555 6789999999999 89999999877653
No 81
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=27.10 E-value=67 Score=22.18 Aligned_cols=35 Identities=23% Similarity=0.098 Sum_probs=27.4
Q ss_pred HHHHHHccCCCHHHHhccCCCCChHHHHHHHHHhhHhh
Q 029398 5 LYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTHLKKK 42 (194)
Q Consensus 5 Li~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~Lrkr 42 (194)
++.++ ..|-.-..||..| |-+...|+++.+. ++++
T Consensus 35 vl~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r-~~~k 69 (95)
T 3c57_A 35 LLGLL-SEGLTNKQIADRM-FLAEKTVKNYVSR-LLAK 69 (95)
T ss_dssp HHHHH-HTTCCHHHHHHHH-TCCHHHHHHHHHH-HHHH
T ss_pred HHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHH-HHHH
Confidence 45555 7788999999999 8999999997766 3444
No 82
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=25.13 E-value=89 Score=21.05 Aligned_cols=25 Identities=8% Similarity=0.056 Sum_probs=21.5
Q ss_pred cCCCHHHHhccCCCCChHHHHHHHHH
Q 029398 12 PFSRWSAIAGRLPGRTDNEIKNVWHT 37 (194)
Q Consensus 12 ~GnkWs~IA~~LpGRTdn~IKNrW~~ 37 (194)
-|-.+..||..| |-+...|+.+-+.
T Consensus 37 ~~~s~~EIA~~l-gis~~tV~~~~~r 61 (87)
T 1tty_A 37 KPKTLEEVGQYF-NVTRERIRQIEVK 61 (87)
T ss_dssp SCCCHHHHHHHH-TCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHH-CCCHHHHHHHHHH
Confidence 578999999998 9999999986554
No 83
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=23.17 E-value=35 Score=24.00 Aligned_cols=30 Identities=10% Similarity=0.245 Sum_probs=23.0
Q ss_pred HHHHHHHccCCCHHHHhccCCCCChHHHHHH
Q 029398 4 VLYLINFAPFSRWSAIAGRLPGRTDNEIKNV 34 (194)
Q Consensus 4 lLi~l~~e~GnkWs~IA~~LpGRTdn~IKNr 34 (194)
.+..+...+|..|..+|+.| |=++..|...
T Consensus 16 ~~~~ia~~lg~~Wk~Lar~L-g~~~~~I~~I 45 (99)
T 1fad_A 16 AFDIVCDNVGRDWKRLAREL-KVSEAKMDGI 45 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHHHH
Confidence 34456677899999999999 7787776553
No 84
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=21.67 E-value=1.1e+02 Score=19.12 Aligned_cols=31 Identities=13% Similarity=0.114 Sum_probs=24.7
Q ss_pred HHHHHHccCCCHHHHhccCCCCChHHHHHHHHH
Q 029398 5 LYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHT 37 (194)
Q Consensus 5 Li~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~ 37 (194)
++.++ ..|-....||..| |-+...|+.+.+.
T Consensus 19 il~~~-~~g~s~~eIA~~l-~is~~tV~~~~~~ 49 (74)
T 1fse_A 19 VFELL-VQDKTTKEIASEL-FISEKTVRNHISN 49 (74)
T ss_dssp HHHHH-TTTCCHHHHHHHH-TSCHHHHHHHHHH
T ss_pred HHHHH-HcCCCHHHHHHHH-CCCHHHHHHHHHH
Confidence 34444 6788899999998 8899999987776
No 85
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=20.46 E-value=1.4e+02 Score=18.11 Aligned_cols=32 Identities=6% Similarity=-0.070 Sum_probs=25.2
Q ss_pred HHHHHHccCCCHHHHhccCCCCChHHHHHHHHHh
Q 029398 5 LYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTH 38 (194)
Q Consensus 5 Li~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~ 38 (194)
++.++ ..|-.-..||..| |-+...|+.+.+..
T Consensus 6 vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~~~ 37 (61)
T 2jpc_A 6 VLKLI-DEGYTNHGISEKL-HISIKTVETHRMNM 37 (61)
T ss_dssp HHHHH-HTSCCSHHHHHHT-CSCHHHHHHHHHHH
T ss_pred HHHHH-HcCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 34443 5688889999999 89999999987763
No 86
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=20.26 E-value=78 Score=21.43 Aligned_cols=32 Identities=19% Similarity=-0.019 Sum_probs=25.3
Q ss_pred HHHHHHccCCCHHHHhccCCCCChHHHHHHHHHh
Q 029398 5 LYLINFAPFSRWSAIAGRLPGRTDNEIKNVWHTH 38 (194)
Q Consensus 5 Li~l~~e~GnkWs~IA~~LpGRTdn~IKNrW~~~ 38 (194)
++.++ ..|-.-..||..| |-+...|+++.+..
T Consensus 37 vl~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~ 68 (91)
T 2rnj_A 37 ILLLI-AKGYSNQEIASAS-HITIKTVKTHVSNI 68 (91)
T ss_dssp HHHHH-HTTCCTTHHHHHH-TCCHHHHHHHHHHH
T ss_pred HHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHH
Confidence 34444 5788899999999 89999999977663
Done!