BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029399
(194 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|B Chain B, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|C Chain C, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|D Chain D, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
Length = 225
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 61/90 (67%), Gaps = 2/90 (2%)
Query: 83 ISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEE 142
+SWSPR +L NFLS EECDY+ ARP + S+VVD ++GK + S +RTS+G + + E
Sbjct: 17 LSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGE 76
Query: 143 KKYPMIQAIEKRISVFSQVPVENGELIQVL 172
+I IEKR++ + +P+EN E +QVL
Sbjct: 77 DS--VISKIEKRVAQVTMIPLENHEGLQVL 104
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|B Chain B, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|C Chain C, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
Length = 233
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 61/90 (67%), Gaps = 2/90 (2%)
Query: 83 ISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEE 142
+SWSPR +L NFLS EECDY+ ARP + S+VVD ++GK + S +RTS+G + + E
Sbjct: 25 LSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGE 84
Query: 143 KKYPMIQAIEKRISVFSQVPVENGELIQVL 172
+I IEKR++ + +P+EN E +QVL
Sbjct: 85 DS--VISKIEKRVAQVTMIPLENHEGLQVL 112
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
pdb|2JIG|B Chain B, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
Length = 224
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 61/90 (67%), Gaps = 2/90 (2%)
Query: 83 ISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEE 142
+SWSPR +L NFLS EECDY+ ARP + S+VVD ++GK + S +RTS+G + + E
Sbjct: 16 LSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGE 75
Query: 143 KKYPMIQAIEKRISVFSQVPVENGELIQVL 172
+I IEKR++ + +P+EN E +QVL
Sbjct: 76 DS--VISKIEKRVAQVTMIPLENHEGLQVL 103
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|B Chain B, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|C Chain C, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|D Chain D, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii
Length = 233
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 60/90 (66%), Gaps = 2/90 (2%)
Query: 83 ISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEE 142
+SWSPR +L NFLS EECDY+ ARP S+VVD ++GK + S +RTS+G + + E
Sbjct: 25 LSWSPRAFLLKNFLSDEECDYIVEKARPKXVKSSVVDNESGKSVDSEIRTSTGTWFAKGE 84
Query: 143 KKYPMIQAIEKRISVFSQVPVENGELIQVL 172
+I IEKR++ + +P+EN E +QVL
Sbjct: 85 DS--VISKIEKRVAQVTXIPLENHEGLQVL 112
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
pdb|3ITQ|B Chain B, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
Length = 216
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 8/87 (9%)
Query: 87 PRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYP 146
P I+VL N LS EECD L +++ L S V ++ +++RTSSG FL E
Sbjct: 39 PLIVVLGNVLSDEECDELIELSKSKLARSKVGSSRD----VNDIRTSSGAFLDDNE---- 90
Query: 147 MIQAIEKRISVFSQVPVENGELIQVLS 173
+ IEKRIS VP +GE + +L+
Sbjct: 91 LTAKIEKRISSIXNVPASHGEGLHILN 117
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 28.5 bits (62), Expect = 2.3, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
Query: 85 WSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKK 144
W +IL L FL + RAI +P L V + +G+G R G+ EE +
Sbjct: 469 WEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVE 528
Query: 145 YPMIQAIEKR----ISVFSQVPVEN--GELIQVLSTGMKK 178
I+ +K + +F ++ E GE + VL G+K+
Sbjct: 529 IVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKR 568
>pdb|3TZE|A Chain A, Crystal Structure Of A Tryptophanyl-Trna Synthetase From
Encephalitozoon Cuniculi Bound To Tryptophan
pdb|3TZE|B Chain B, Crystal Structure Of A Tryptophanyl-Trna Synthetase From
Encephalitozoon Cuniculi Bound To Tryptophan
Length = 406
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 63 FWDNDKEAELLRLGYVKPEVISWSPR---ILVLHNFLS 97
F D+D+E E R GY+K E+ S + ++V+ F+S
Sbjct: 346 FLDDDQELEKYRSGYIKGEITSKEMKEKCVVVIQEFVS 383
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 84 SWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEK 143
W +IL L FL + RAI +P L V + +G+G R G+ EE
Sbjct: 125 EWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEV 184
Query: 144 KYPMIQAIEKR----ISVFSQVPVEN--GELIQVLSTGMKK 178
+ I+ +K + +F ++ E GE + VL G+K+
Sbjct: 185 EIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKR 225
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 84 SWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEK 143
W +IL L FL + RAI +P L V + +G+G R G+ EE
Sbjct: 125 EWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEV 184
Query: 144 KYPMIQAIEKR----ISVFSQVPVEN--GELIQVLSTGMKK 178
+ I+ +K + +F ++ E GE + VL G+K+
Sbjct: 185 EIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKR 225
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 84 SWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEK 143
W +IL L FL + RAI +P L V + +G+G R G+ EE
Sbjct: 184 EWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEV 243
Query: 144 KYPMIQAIEKR----ISVFSQVPVEN--GELIQVLSTGMKK 178
+ I+ +K + +F ++ E GE + VL G+K+
Sbjct: 244 EIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKR 284
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 84 SWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEK 143
W +IL L FL + RAI +P L V + +G+G R G+ EE
Sbjct: 183 EWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEV 242
Query: 144 KYPMIQAIEKR----ISVFSQVPVEN--GELIQVLSTGMKK 178
+ I+ +K + +F ++ E GE + VL G+K+
Sbjct: 243 EIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKR 283
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 84 SWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEK 143
W +IL L FL + RAI +P L V + +G+G R G+ EE
Sbjct: 183 EWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEV 242
Query: 144 KYPMIQAIEKR----ISVFSQVPVEN--GELIQVLSTGMKK 178
+ I+ +K + +F ++ E GE + VL G+K+
Sbjct: 243 EIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKR 283
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 84 SWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEK 143
W +IL L FL + RAI +P L V + +G+G R G+ EE
Sbjct: 184 EWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEV 243
Query: 144 KYPMIQAIEKR----ISVFSQVPVEN--GELIQVLSTGMKK 178
+ I+ +K + +F ++ E GE + VL G+K+
Sbjct: 244 EIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKR 284
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 84 SWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEK 143
W +IL L FL + RAI +P L V + +G+G R G+ EE
Sbjct: 175 EWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEV 234
Query: 144 KYPMIQAIEKR----ISVFSQVPVEN--GELIQVLSTGMKK 178
+ I+ +K + +F ++ E GE + VL G+K+
Sbjct: 235 EIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKR 275
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 84 SWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEK 143
W +IL L FL + RAI +P L V + +G+G R G+ EE
Sbjct: 183 EWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEV 242
Query: 144 KYPMIQAIEKR----ISVFSQVPVEN--GELIQVLSTGMKK 178
+ I+ +K + +F ++ E GE + VL G+K+
Sbjct: 243 EIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKR 283
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
Query: 85 WSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKK 144
W +IL L FL + RAI +P L V + +G+G R G+ EE +
Sbjct: 170 WEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVE 229
Query: 145 YPMIQAIEKR----ISVFSQVPVEN--GELIQVLSTGMKK 178
I+ +K + +F ++ E GE + VL G+K+
Sbjct: 230 IVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKR 269
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
Query: 85 WSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKK 144
W +IL L FL + RAI +P L V + +G+G R G+ EE +
Sbjct: 469 WEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVE 528
Query: 145 YPMIQAIEKR----ISVFSQVPVEN--GELIQVLSTGMKK 178
I+ +K + +F ++ E GE + VL G+K+
Sbjct: 529 IVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKR 568
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,152,396
Number of Sequences: 62578
Number of extensions: 201363
Number of successful extensions: 356
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 346
Number of HSP's gapped (non-prelim): 23
length of query: 194
length of database: 14,973,337
effective HSP length: 94
effective length of query: 100
effective length of database: 9,091,005
effective search space: 909100500
effective search space used: 909100500
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)