BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029399
(194 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q60716|P4HA2_MOUSE Prolyl 4-hydroxylase subunit alpha-2 OS=Mus musculus GN=P4ha2 PE=2
SV=1
Length = 537
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 86 SPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKY 145
SP I+ ++ +S EE + ++ IA+P L +TV D KTG ++ R S +L EE
Sbjct: 337 SPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWL--EEDDD 394
Query: 146 PMIQAIEKRISVFSQVPVENGELIQVLSTGM 176
P++ + +R+ + + V+ EL+QV + GM
Sbjct: 395 PVVARVNRRMQHITGLTVKTAELLQVANYGM 425
>sp|P16924|P4HA1_CHICK Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1
SV=1
Length = 516
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 9/129 (6%)
Query: 48 RRQKNGYLQLPRGVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAI 107
RRQK + + ++D ++ + LG VK E PRI+ + +S EE + ++ +
Sbjct: 285 RRQKRLFCR------YYDGNRNPRYI-LGPVKQEDEWDKPRIVRFLDIISDEEIETVKEL 337
Query: 108 ARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGE 167
A+P L +TV D +TGK ++ R S +LS E P++ I RI + + V E
Sbjct: 338 AKPRLSRATVHDPETGKLTTAHYRVSKSAWLSGYES--PVVSRINTRIQDLTGLDVSTAE 395
Query: 168 LIQVLSTGM 176
+QV + G+
Sbjct: 396 ELQVANYGV 404
>sp|Q5ZLK5|P4HA2_CHICK Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gallus GN=P4HA2 PE=2
SV=1
Length = 534
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 9/129 (6%)
Query: 48 RRQKNGYLQLPRGVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAI 107
RRQK + + + D ++ LL + K E SP I+ ++ +S EE + ++ +
Sbjct: 305 RRQKRLFCR------YHDGNRNPHLL-IAPFKEEDEWDSPHIVRYYDVMSDEEIEKIKQL 357
Query: 108 ARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGE 167
A+P L +TV D KTG ++ R S +L EE P++ + +R+ + + V+ E
Sbjct: 358 AKPKLARATVRDPKTGVLTVASYRVSKSSWL--EEDDDPVVAKVNQRMQQITGLTVKTAE 415
Query: 168 LIQVLSTGM 176
L+QV + GM
Sbjct: 416 LLQVANYGM 424
>sp|O15460|P4HA2_HUMAN Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1
SV=1
Length = 535
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 86 SPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKY 145
SP I+ ++ +S EE + ++ IA+P L +TV D KTG ++ R S +L EE
Sbjct: 335 SPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWL--EEDDD 392
Query: 146 PMIQAIEKRISVFSQVPVENGELIQVLSTGM 176
P++ + +R+ + + V+ EL+QV + G+
Sbjct: 393 PVVARVNRRMQHITGLTVKTAELLQVANYGV 423
>sp|P54001|P4HA1_RAT Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1
PE=2 SV=2
Length = 534
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 87 PRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYP 146
PRI+ H+ +S E + ++ +A+P L +TV D +TGK + R S +LS E P
Sbjct: 335 PRIIRFHDIISDAEIEIVKDLAKPRLSRATVHDPETGKLTTAQYRVSKSAWLSGYED--P 392
Query: 147 MIQAIEKRISVFSQVPVENGELIQVLSTGM 176
++ I RI + + V E +QV + G+
Sbjct: 393 VVSRINMRIQDLTGLDVSTAEELQVANYGV 422
>sp|Q20065|P4HA2_CAEEL Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabditis elegans
GN=phy-2 PE=1 SV=1
Length = 539
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
Query: 68 KEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIK 127
++ L+L +K E++ + P ++ N + E + ++ +A P L+ +TV ++KTG+
Sbjct: 306 RDKPFLKLAPIKVEILRFDPLAVLFKNVIHDSEIEVIKELASPKLKRATVQNSKTGELEH 365
Query: 128 SNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLSTGM 176
+ R S +L + P+I + +RI F+ + E +QV + G+
Sbjct: 366 ATYRISKSAWLKGDLD--PVIDRVNRRIEDFTNLNQATSEELQVANYGL 412
>sp|Q10576|P4HA1_CAEEL Prolyl 4-hydroxylase subunit alpha-1 OS=Caenorhabditis elegans
GN=dpy-18 PE=1 SV=2
Length = 559
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 78 VKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMF 137
+K E+ ++P ++ + +S +E ++ +A+P L +TV D+ TGK + + R S +
Sbjct: 319 IKVEIKRFNPLAVLFKDVISDDEVAAIQELAKPKLARATVHDSVTGKLVTATYRISKSAW 378
Query: 138 LSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLSTGM 176
L +E + +++ + KRI + + +E E +Q+ + G+
Sbjct: 379 L--KEWEGDVVETVNKRIGYMTNLEMETAEELQIANYGI 415
>sp|Q1RMU3|P4HA1_BOVIN Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus GN=P4HA1 PE=1
SV=1
Length = 534
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 87 PRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYP 146
PRI+ H+ +S E + ++ +A+P L+ +T+ + TG + R S +LS E P
Sbjct: 335 PRIIRFHDIISDAEIEVVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYEN--P 392
Query: 147 MIQAIEKRISVFSQVPVENGELIQVLSTGM 176
++ I RI + + V E +QV + G+
Sbjct: 393 VVSRINMRIQDLTGLDVSTAEELQVANYGV 422
>sp|Q5RAG8|P4HA1_PONAB Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abelii GN=P4HA1 PE=2
SV=1
Length = 534
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 87 PRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYP 146
PRI+ H+ +S E + ++ +A+P L+ +T+ + TG + R S +LS E P
Sbjct: 335 PRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYEN--P 392
Query: 147 MIQAIEKRISVFSQVPVENGELIQVLSTGM 176
++ I RI + + V E +QV + G+
Sbjct: 393 VVSRINMRIQDLTGLDVSTAEELQVANYGV 422
>sp|P13674|P4HA1_HUMAN Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1
SV=2
Length = 534
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 87 PRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYP 146
PRI+ H+ +S E + ++ +A+P L+ +T+ + TG + R S +LS E P
Sbjct: 335 PRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYEN--P 392
Query: 147 MIQAIEKRISVFSQVPVENGELIQVLSTGM 176
++ I RI + + V E +QV + G+
Sbjct: 393 VVSRINMRIQDLTGLDVSTAEELQVANYGV 422
>sp|Q60715|P4HA1_MOUSE Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2
SV=2
Length = 534
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 87 PRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYP 146
PRI+ H+ +S E + ++ +A+P L+ +T+ + TG + R S +LS E P
Sbjct: 335 PRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPVTGALETVHYRISKSAWLSGYED--P 392
Query: 147 MIQAIEKRISVFSQVPVENGELIQVLSTGM 176
++ I RI + + V E +QV + G+
Sbjct: 393 VVSRINMRIQDLTGLDVSTAEELQVANYGV 422
>sp|Q6W3F0|P4HA3_MOUSE Prolyl 4-hydroxylase subunit alpha-3 OS=Mus musculus GN=P4ha3 PE=2
SV=1
Length = 542
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 63/125 (50%), Gaps = 7/125 (5%)
Query: 54 YLQLPRGVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQ 113
+ Q+P ++ + LL L + EV+ P I + H+F+S EE +R +A P LQ
Sbjct: 312 HYQIPSLYCSYETNSSPYLL-LQPARKEVVHLRPLIALYHDFVSDEEAQKIRELAEPWLQ 370
Query: 114 VSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVE--NGELIQV 171
S V + K ++ R S +L ++ PM+ ++ RI+ + + ++ E +QV
Sbjct: 371 RSVVASGE--KQLQVEYRISKSAWL--KDTVDPMLVTLDHRIAALTGLDIQPPYAEYLQV 426
Query: 172 LSTGM 176
++ G+
Sbjct: 427 VNYGI 431
>sp|Q6W3E9|P4HA3_RAT Prolyl 4-hydroxylase subunit alpha-3 OS=Rattus norvegicus GN=P4ha3
PE=2 SV=1
Length = 544
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 54 YLQLPRGVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQ 113
+ Q+P ++ + LL L + EVI P + + H+F+S EE +R +A P LQ
Sbjct: 314 HYQIPSLYCSYETNSSPYLL-LQPARKEVIHLRPLVALYHDFVSDEEAQKIRELAEPWLQ 372
Query: 114 VSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVE--NGELIQV 171
S V + K ++ R S +L ++ P++ +++RI+ + + ++ E +QV
Sbjct: 373 RSVVASGE--KQLQVEYRISKSAWL--KDTVDPVLVTLDRRIAALTGLDIQPPYAEYLQV 428
Query: 172 LSTGM 176
++ G+
Sbjct: 429 VNYGI 433
>sp|Q75UG4|P4HA3_BOVIN Prolyl 4-hydroxylase subunit alpha-3 OS=Bos taurus GN=P4HA3 PE=2
SV=1
Length = 544
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 78 VKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMF 137
V+ EVI P +++ H+F+S E +R +A P LQ S V + K + R S +
Sbjct: 337 VRKEVIHLEPYVVLYHDFVSDAEAQTIRGLAEPWLQRSVVASGE--KQLPVEYRISKSAW 394
Query: 138 LSPEEKKYPMIQAIEKRISVFSQVPVE--NGELIQVLSTGM 176
L ++ P++ ++ RI+ + + V+ E +QV++ G+
Sbjct: 395 L--KDTVDPVLVTLDHRIAALTGLDVQPPYAEYLQVVNYGI 433
>sp|Q7Z4N8|P4HA3_HUMAN Prolyl 4-hydroxylase subunit alpha-3 OS=Homo sapiens GN=P4HA3 PE=1
SV=1
Length = 544
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 56 QLPRGVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVS 115
Q+P ++ + A LL L ++ EVI P I + H+F+S E +R +A P LQ S
Sbjct: 316 QIPSLYCSYETNSNAYLL-LQPIRKEVIHLEPYIALYHDFVSDSEAQKIRELAEPWLQRS 374
Query: 116 TVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVE--NGELIQVLS 173
V + K ++ R S +L ++ P + + RI+ + + V E +QV++
Sbjct: 375 VVASGE--KQLQVEYRISKSAWL--KDTVDPKLVTLNHRIAALTGLDVRPPYAEYLQVVN 430
Query: 174 TGM 176
G+
Sbjct: 431 YGI 433
>sp|Q5UP57|P4H_MIMIV Putative prolyl 4-hydroxylase OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L593 PE=1 SV=1
Length = 242
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 90 LVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQ 149
VL+N ++ +C + A L D++ G N+R S M++S K PM++
Sbjct: 61 FVLNNLINPTKCQEIMQFANGKL-----FDSQVLSGTDKNIRNSQQMWIS---KNNPMVK 112
Query: 150 AIEKRISVFSQVPVENGELIQVL 172
I + I VP +N E +QV+
Sbjct: 113 PIFENICRQFNVPFDNAEDLQVV 135
>sp|Q9WVL3|S12A7_MOUSE Solute carrier family 12 member 7 OS=Mus musculus GN=Slc12a7 PE=1
SV=1
Length = 1083
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 25/112 (22%)
Query: 16 FVTFGMII-GALFQLAFIRKLEDSYGTDFPSFMRRQKNGYLQLPRGVTFWDNDKEAELLR 74
+ F M+I G +++ R E +G RG++ N LLR
Sbjct: 637 YALFAMLIAGCIYKYIEYRGAEKEWGDGI---------------RGLSL--NAARYALLR 679
Query: 75 LGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGI 126
+ + P +W P++LV+ N L E+C + P L +S K GKG+
Sbjct: 680 VEHGPPHTKNWRPQVLVMLN-LDSEQC-----VKHPRL-LSFTSQLKAGKGL 724
>sp|Q5RK27|S12A7_RAT Solute carrier family 12 member 7 OS=Rattus norvegicus GN=Slc12a7
PE=2 SV=2
Length = 1083
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 25/112 (22%)
Query: 16 FVTFGMII-GALFQLAFIRKLEDSYGTDFPSFMRRQKNGYLQLPRGVTFWDNDKEAELLR 74
+ F M+I G +++ R E +G RG++ N LLR
Sbjct: 637 YALFAMLIAGCIYKYIEYRGAEKEWGDGI---------------RGLSL--NAARYALLR 679
Query: 75 LGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGI 126
+ + P +W P++LV+ N L E+C + P L +S K GKG+
Sbjct: 680 VEHGPPHTKNWRPQVLVMLN-LDSEQC-----VKHPRL-LSFTSQLKAGKGL 724
>sp|A4WQU1|SYT_RHOS5 Threonine--tRNA ligase OS=Rhodobacter sphaeroides (strain ATCC
17025 / ATH 2.4.3) GN=thrS PE=3 SV=1
Length = 646
Score = 32.3 bits (72), Expect = 2.0, Method: Composition-based stats.
Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 19/152 (12%)
Query: 33 RKLEDSYGTDFPSFMRRQKNGYLQLPRGVTFWDN---DKEAELLRLGYVKPEVISWSPRI 89
++L+ YG F + R + YL + D+ KE EL L P ++ W P
Sbjct: 217 KQLQRIYGVAFKT--RDELKAYLHMLEEAAKRDHRKLGKEMELFHLQEEAPGMVFWHPNG 274
Query: 90 LVLHNFLSMEECDYLRAIAR----PHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKY 145
++ L DY+R R ++ VVD K + MFL E+++
Sbjct: 275 WQIYRTLE----DYMRGRLRKAGYKEIRTPQVVDRKLWEASGHWEAYKENMFLVEVEEEH 330
Query: 146 PMIQAIEKRISVFSQVPVENGELIQVLSTGMK 177
A EKRI+ P+ +QV + G+K
Sbjct: 331 ----AKEKRINALK--PMNCPCHVQVYNQGLK 356
>sp|Q9Y666|S12A7_HUMAN Solute carrier family 12 member 7 OS=Homo sapiens GN=SLC12A7 PE=1
SV=3
Length = 1083
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 59 RGVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVV 118
RG++ N LLR+ + P +W P++LV+ N D +A+ P L +S
Sbjct: 666 RGLSL--NAARYALLRVEHGPPHTKNWRPQVLVMLNL------DAEQAVKHPRL-LSFTS 716
Query: 119 DTKTGKGI 126
K GKG+
Sbjct: 717 QLKAGKGL 724
>sp|B9KKC7|SYT_RHOSK Threonine--tRNA ligase OS=Rhodobacter sphaeroides (strain KD131 /
KCTC 12085) GN=thrS PE=3 SV=1
Length = 646
Score = 31.2 bits (69), Expect = 4.3, Method: Composition-based stats.
Identities = 38/152 (25%), Positives = 62/152 (40%), Gaps = 19/152 (12%)
Query: 33 RKLEDSYGTDFPSFMRRQKNGYLQLPRGVTFWDNDK---EAELLRLGYVKPEVISWSPRI 89
++L+ YG F + R + YL + D+ K E EL L P ++ W P
Sbjct: 217 KQLQRIYGVAFKT--RDELKAYLHMLEEAAKRDHRKLGREMELFHLQEEAPGMVFWHPNG 274
Query: 90 LVLHNFLSMEECDYLRAIAR----PHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKY 145
++ L DY+R R ++ VVD K + MF+ E+++
Sbjct: 275 WQIYRTLE----DYMRGRLRQAGYKEIRTPQVVDRKLWEASGHWEAYKENMFIVEVEEEH 330
Query: 146 PMIQAIEKRISVFSQVPVENGELIQVLSTGMK 177
A EKRI+ P+ +QV + G+K
Sbjct: 331 ----AKEKRINALK--PMNCPCHVQVYNQGLK 356
>sp|Q3J0X4|SYT_RHOS4 Threonine--tRNA ligase OS=Rhodobacter sphaeroides (strain ATCC
17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=thrS PE=3 SV=1
Length = 646
Score = 31.2 bits (69), Expect = 4.3, Method: Composition-based stats.
Identities = 38/152 (25%), Positives = 62/152 (40%), Gaps = 19/152 (12%)
Query: 33 RKLEDSYGTDFPSFMRRQKNGYLQLPRGVTFWDNDK---EAELLRLGYVKPEVISWSPRI 89
++L+ YG F + R + YL + D+ K E EL L P ++ W P
Sbjct: 217 KQLQRIYGVAFKT--RDELKAYLHMLEEAAKRDHRKLGREMELFHLQEEAPGMVFWHPNG 274
Query: 90 LVLHNFLSMEECDYLRAIAR----PHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKY 145
++ L DY+R R ++ VVD K + MF+ E+++
Sbjct: 275 WQIYRTLE----DYMRGRLRQAGYKEIRTPQVVDRKLWEASGHWEAYKENMFIVEVEEEH 330
Query: 146 PMIQAIEKRISVFSQVPVENGELIQVLSTGMK 177
A EKRI+ P+ +QV + G+K
Sbjct: 331 ----AKEKRINALK--PMNCPCHVQVYNQGLK 356
>sp|A3PLC6|SYT_RHOS1 Threonine--tRNA ligase OS=Rhodobacter sphaeroides (strain ATCC
17029 / ATH 2.4.9) GN=thrS PE=3 SV=1
Length = 646
Score = 31.2 bits (69), Expect = 4.3, Method: Composition-based stats.
Identities = 38/152 (25%), Positives = 62/152 (40%), Gaps = 19/152 (12%)
Query: 33 RKLEDSYGTDFPSFMRRQKNGYLQLPRGVTFWDNDK---EAELLRLGYVKPEVISWSPRI 89
++L+ YG F + R + YL + D+ K E EL L P ++ W P
Sbjct: 217 KQLQRIYGVAFKT--RDELKAYLHMLEEAAKRDHRKLGREMELFHLQEEAPGMVFWHPNG 274
Query: 90 LVLHNFLSMEECDYLRAIAR----PHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKY 145
++ L DY+R R ++ VVD K + MF+ E+++
Sbjct: 275 WQIYRTLE----DYMRGRLRQAGYKEIRTPQVVDRKLWEASGHWEAYKENMFIVEVEEEH 330
Query: 146 PMIQAIEKRISVFSQVPVENGELIQVLSTGMK 177
A EKRI+ P+ +QV + G+K
Sbjct: 331 ----AKEKRINALK--PMNCPCHVQVYNQGLK 356
>sp|Q07UZ3|ATPA_RHOP5 ATP synthase subunit alpha OS=Rhodopseudomonas palustris (strain
BisA53) GN=atpA PE=3 SV=1
Length = 510
Score = 30.8 bits (68), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 116 TVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLSTG 175
++VDT GKG+ V + G +P + K P++ KR+ V + + + + ++TG
Sbjct: 93 SIVDTPVGKGLLGRVVDALG---NPIDGKGPIVATERKRVDVKAPGIIPRKSVHEPMATG 149
Query: 176 MKKISITSPI 185
+K I PI
Sbjct: 150 LKSIDALIPI 159
>sp|Q2G5N7|ATPA_NOVAD ATP synthase subunit alpha OS=Novosphingobium aromaticivorans
(strain DSM 12444) GN=atpA PE=3 SV=1
Length = 509
Score = 30.4 bits (67), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 113 QVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVL 172
+ T+VD GKG+ V + G +P + K P++ A +R+ V + + + + +
Sbjct: 90 RTGTIVDVPVGKGLLGRVVDALG---NPIDGKGPIVDATRQRVEVKAPGIIPRKSVHEPV 146
Query: 173 STGMKKISITSPI 185
TG+K I P+
Sbjct: 147 QTGLKAIDALVPV 159
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,302,229
Number of Sequences: 539616
Number of extensions: 2751682
Number of successful extensions: 6436
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 6418
Number of HSP's gapped (non-prelim): 45
length of query: 194
length of database: 191,569,459
effective HSP length: 111
effective length of query: 83
effective length of database: 131,672,083
effective search space: 10928782889
effective search space used: 10928782889
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)