Query 029399
Match_columns 194
No_of_seqs 182 out of 822
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 12:18:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029399.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029399hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1591 Prolyl 4-hydroxylase a 100.0 2.6E-36 5.6E-41 264.1 11.8 141 49-193 49-221 (289)
2 PLN00052 prolyl 4-hydroxylase; 100.0 1.3E-30 2.8E-35 230.2 14.1 118 74-193 41-173 (310)
3 smart00702 P4Hc Prolyl 4-hydro 99.8 6.8E-18 1.5E-22 136.4 11.5 106 87-193 1-120 (178)
4 PRK05467 Fe(II)-dependent oxyg 97.8 0.00011 2.3E-09 62.9 7.6 85 89-183 2-96 (226)
5 PF13532 2OG-FeII_Oxy_2: 2OG-F 87.4 3.7 8E-05 32.9 7.8 21 89-109 2-22 (194)
6 PHA02813 hypothetical protein; 83.3 3.1 6.8E-05 38.0 6.0 73 109-184 33-111 (354)
7 PHA02869 C4L/C10L-like gene fa 83.0 2.2 4.8E-05 39.7 5.0 69 111-184 44-120 (418)
8 COG3128 PiuC Uncharacterized i 51.7 9.4 0.0002 32.4 1.7 88 87-183 2-98 (229)
9 PHA02708 hypothetical protein; 38.9 32 0.0007 27.3 2.8 23 5-27 2-24 (148)
10 KOG3200 Uncharacterized conser 33.1 2.2E+02 0.0047 24.1 6.9 90 82-182 7-103 (224)
11 PF01448 ELM2: ELM2 domain; I 30.6 56 0.0012 21.2 2.6 27 80-111 28-54 (55)
12 PF04194 PDCD2_C: Programmed c 29.8 63 0.0014 26.0 3.3 26 145-179 57-82 (164)
13 KOG3959 2-Oxoglutarate- and ir 29.7 58 0.0013 28.7 3.1 69 86-161 71-146 (306)
14 PF05721 PhyH: Phytanoyl-CoA d 28.9 64 0.0014 24.9 3.1 22 89-110 6-27 (211)
15 cd01793 Fubi Fubi ubiquitin-li 28.4 1.1E+02 0.0024 20.8 3.9 27 145-175 18-44 (74)
16 PF07894 DUF1669: Protein of u 27.6 64 0.0014 28.7 3.1 20 92-111 47-66 (284)
17 cd08788 CARD_NOD2_2_CARD15 Cas 27.0 26 0.00057 25.5 0.5 15 92-106 25-39 (81)
18 PF11406 Tachystatin_A: Antimi 25.7 72 0.0016 20.0 2.2 20 55-74 21-40 (44)
19 PF06522 B12D: NADH-ubiquinone 25.4 53 0.0012 23.0 1.8 17 10-26 6-22 (73)
20 PF06624 RAMP4: Ribosome assoc 25.1 36 0.00077 23.6 0.9 22 5-29 36-57 (63)
21 PF06364 DUF1068: Protein of u 24.9 1.1E+02 0.0023 25.5 3.7 31 7-37 8-38 (176)
22 cd00491 4Oxalocrotonate_Tautom 24.6 44 0.00096 21.3 1.2 34 145-178 17-54 (58)
23 KOG2446 Glucose-6-phosphate is 21.5 4.5E+02 0.0097 25.4 7.5 88 92-179 57-161 (546)
24 cd05568 PTS_IIB_bgl_like PTS_I 20.3 1.9E+02 0.0041 19.5 3.9 24 86-109 60-83 (85)
No 1
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-36 Score=264.07 Aligned_cols=141 Identities=42% Similarity=0.617 Sum_probs=124.9
Q ss_pred ccccccccCCCc------------eEEEeCCCCcceEEeecceeEEeecCccEEEEcCCCCHHHHHHHHHHhcCCccccE
Q 029399 49 RQKNGYLQLPRG------------VTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVST 116 (194)
Q Consensus 49 ~~~~~y~~lcrg------------l~C~y~~~~~pfl~LaP~K~E~LS~~P~I~~~hdfLSd~Ecd~Li~lA~p~L~rS~ 116 (194)
.++..|+..||| +.|++.+. ||++++|+|+|++||+|+|++||||||++|||+|+.+|+|+|++++
T Consensus 49 ~~~~~~~~~c~g~~~~~~~~~~~~~~~~~~~~--~~~~~ap~k~E~lsw~P~~~~yhd~ls~~e~d~l~~lak~~l~~st 126 (289)
T KOG1591|consen 49 QEFTVYEQGCRGELPPLTKLTLRRLSCRNRAG--PFLRLAPVKLEELSWDPRVVLYHDFLSDEECDHLISLAKPKLERST 126 (289)
T ss_pred ccccchhhhccCccCccchhHhhhhhcccccC--cceeecchhhhhcccCCceEeehhcCCHHHHHHHHHhhhhhhhcee
Confidence 456678888887 45665544 9999999999999999999999999999999999999999999999
Q ss_pred E-eeCCCCCeeecceeeeeeeecCCCCCcchHHHHHHHHHHHhcCCCCCCCccceEEEeCCCcccccc------------
Q 029399 117 V-VDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLSTGMKKISITS------------ 183 (194)
Q Consensus 117 V-~~~~tG~~~~s~~RtS~~awL~~~~~~~pvv~rI~~Ria~ltGl~~~~~E~LQV~nYg~Gg~~~~~------------ 183 (194)
| .+.++|....+.+|+|+++|+..++ ++++++|++||+++||+|.+++|+|||+|||+||+|..|
T Consensus 127 v~~~~~~~~~~~~~~R~S~~t~l~~~~--~~~~~~i~~ri~~~T~l~~e~~E~lqVlnYg~Gg~Y~~H~D~~~~~~~~~~ 204 (289)
T KOG1591|consen 127 VVADKGTGHSTTSAVRTSSGTFLPDGA--SPVVSRIEQRIADLTGLPVENGESLQVLNYGLGGHYEPHYDYFLPEEDETF 204 (289)
T ss_pred eeccCCcccccceeeEecceeEecCCC--CHHHHHHHHHHHhccCCCcccCccceEEEecCCccccccccccccccchhh
Confidence 9 4556677778889999999999954 899999999999999999999999999999999998555
Q ss_pred -------ceeEEEEecc
Q 029399 184 -------PITITFQTLS 193 (194)
Q Consensus 184 -------~~~~~f~~~~ 193 (194)
||+|+-.|||
T Consensus 205 ~~~~~g~RiaT~l~yls 221 (289)
T KOG1591|consen 205 NGLNGGNRIATVLMYLS 221 (289)
T ss_pred hhcccCCcceeEEEEec
Confidence 6777777776
No 2
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=99.97 E-value=1.3e-30 Score=230.22 Aligned_cols=118 Identities=38% Similarity=0.578 Sum_probs=111.3
Q ss_pred EeecceeEEeecCccEEEEcCCCCHHHHHHHHHHhcCCccccEEeeCCCCCeeecceeeeeeeecCCCCCcchHHHHHHH
Q 029399 74 RLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEK 153 (194)
Q Consensus 74 ~LaP~K~E~LS~~P~I~~~hdfLSd~Ecd~Li~lA~p~L~rS~V~~~~tG~~~~s~~RtS~~awL~~~~~~~pvv~rI~~ 153 (194)
.+.|.|+|+|||+|+|++||||||++||++||++|++++++|+|++..+|+...+++|||+++||...+ +|++++|++
T Consensus 41 ~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~~s~~RTS~~~~l~~~~--dpvv~~I~~ 118 (310)
T PLN00052 41 PFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLDKRQ--DPVVSRIEE 118 (310)
T ss_pred CcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCccccCCCEEecceeecCCC--CHHHHHHHH
Confidence 358999999999999999999999999999999999999999999888888888999999999998765 899999999
Q ss_pred HHHHhcCCCCCCCccceEEEeCCCcccc---------------ccceeEEEEecc
Q 029399 154 RISVFSQVPVENGELIQVLSTGMKKISI---------------TSPITITFQTLS 193 (194)
Q Consensus 154 Ria~ltGl~~~~~E~LQV~nYg~Gg~~~---------------~~~~~~~f~~~~ 193 (194)
||++++|+|.++.|.+||+||++||+|. .+|++|+++||+
T Consensus 119 Ria~~t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLn 173 (310)
T PLN00052 119 RIAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMYLS 173 (310)
T ss_pred HHHHHhCCCcccCcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEEec
Confidence 9999999999999999999999999984 468999999997
No 3
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=99.76 E-value=6.8e-18 Score=136.38 Aligned_cols=106 Identities=26% Similarity=0.265 Sum_probs=93.7
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhcCCccccEEeeCCCCCeeecceeeeeeeecCCCCCcchHHHHHHHHHHHhcCCC---C
Q 029399 87 PRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVP---V 163 (194)
Q Consensus 87 P~I~~~hdfLSd~Ecd~Li~lA~p~L~rS~V~~~~tG~~~~s~~RtS~~awL~~~~~~~pvv~rI~~Ria~ltGl~---~ 163 (194)
|.|+++|||||++||+.|++++++...++.+.+..++....+++|+|+.+|+...+ .++++++|.+|++++++++ .
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~-~~~~~~~l~~~i~~~~~~~~~~~ 79 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLGWRGEVTRGDTNPNHDSKYRQSNGTWLELLK-GDLVIERIRQRLADFLGLLRGLP 79 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhcccceeecCCCCccccCCCEeecceecCCCC-CCHHHHHHHHHHHHHHCCCchhh
Confidence 89999999999999999999999999999998765443356889999999998763 3699999999999999998 7
Q ss_pred CCCccceEEEeCCCccccc-----------cceeEEEEecc
Q 029399 164 ENGELIQVLSTGMKKISIT-----------SPITITFQTLS 193 (194)
Q Consensus 164 ~~~E~LQV~nYg~Gg~~~~-----------~~~~~~f~~~~ 193 (194)
.+.|.+|+++|++|++|.. +|+.|+.+||+
T Consensus 80 ~~~~~~~~~~Y~~g~~~~~H~D~~~~~~~~~r~~T~~~yLn 120 (178)
T smart00702 80 LSAEDAQVARYGPGGHYGPHVDNFEDDENGDRIATFLLYLN 120 (178)
T ss_pred ccCcceEEEEECCCCcccCcCCCCCCCCCCCeEEEEEEEec
Confidence 8999999999999999744 56899999987
No 4
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=97.75 E-value=0.00011 Score=62.94 Aligned_cols=85 Identities=15% Similarity=0.109 Sum_probs=55.2
Q ss_pred EEEEcCCCCHHHHHHHHHHhcC-CccccEEeeCCCCCeeecceeeeeeeecCCCCCcchHHHHHHHHHHHhc--------
Q 029399 89 ILVLHNFLSMEECDYLRAIARP-HLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFS-------- 159 (194)
Q Consensus 89 I~~~hdfLSd~Ecd~Li~lA~p-~L~rS~V~~~~tG~~~~s~~RtS~~awL~~~~~~~pvv~rI~~Ria~lt-------- 159 (194)
|+.++||||++||+++++..+. .+....+.. | ...+++|.... +..+ ++..+.|.+||....
T Consensus 2 i~~I~~vLs~eec~~~~~~le~~~~~dg~~ta---G-~~~~~vKnN~q--l~~d---~~~a~~l~~~i~~~L~~~~l~~s 72 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELLDAAEWVDGRVTA---G-AQAAQVKNNQQ--LPED---SPLARELGNLILDALTRNPLFFS 72 (226)
T ss_pred eeeecccCCHHHHHHHHHHHHhcCCccCCcCc---C-ccchhcccccc--cCCC---CHHHHHHHHHHHHHHhcCchhhh
Confidence 6789999999999999998753 333222211 1 12345565433 3333 577777888877544
Q ss_pred -CCCCCCCccceEEEeCCCcccccc
Q 029399 160 -QVPVENGELIQVLSTGMKKISITS 183 (194)
Q Consensus 160 -Gl~~~~~E~LQV~nYg~Gg~~~~~ 183 (194)
.+| ...+++.+.+|..|++|..|
T Consensus 73 a~lp-~~i~~~~f~rY~~G~~y~~H 96 (226)
T PRK05467 73 AALP-RKIHPPLFNRYEGGMSYGFH 96 (226)
T ss_pred hccc-cccccceEEEECCCCccCcc
Confidence 233 23357789999999998555
No 5
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=87.42 E-value=3.7 Score=32.89 Aligned_cols=21 Identities=38% Similarity=0.404 Sum_probs=17.6
Q ss_pred EEEEcCCCCHHHHHHHHHHhc
Q 029399 89 ILVLHNFLSMEECDYLRAIAR 109 (194)
Q Consensus 89 I~~~hdfLSd~Ecd~Li~lA~ 109 (194)
+.+++||||++|.+.|.+...
T Consensus 2 ~~~~~~fls~~e~~~l~~~l~ 22 (194)
T PF13532_consen 2 LYYIPNFLSEEEAAELLNELR 22 (194)
T ss_dssp EEEETTSS-HHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHH
Confidence 578999999999999998775
No 6
>PHA02813 hypothetical protein; Provisional
Probab=83.32 E-value=3.1 Score=37.99 Aligned_cols=73 Identities=15% Similarity=0.145 Sum_probs=51.2
Q ss_pred cCCccccEEeeCCCC-CeeecceeeeeeeecCCCCCcchHHHHHHHHHH-HhcCCC----CCCCccceEEEeCCCccccc
Q 029399 109 RPHLQVSTVVDTKTG-KGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRIS-VFSQVP----VENGELIQVLSTGMKKISIT 182 (194)
Q Consensus 109 ~p~L~rS~V~~~~tG-~~~~s~~RtS~~awL~~~~~~~pvv~rI~~Ria-~ltGl~----~~~~E~LQV~nYg~Gg~~~~ 182 (194)
.-.+..|.+.+..+| +....+.|+++.+-++.. +.+..+|.+-+- .+.|.+ +.-.|.+-+.+|.+|++|..
T Consensus 33 d~~~~~s~i~~~~~~ge~l~~~iRnNkrviid~~---~~L~erIr~~Lp~~l~~~~lv~~V~vnerirfyrY~kGq~F~~ 109 (354)
T PHA02813 33 DIIWEESKVFDHEKGGEVINTNERQCKQYIIRGL---DDIFKVIRKKLLLSFEFPQKISDIILDNTITLIKYEKGDFFNN 109 (354)
T ss_pred ccCccccceeccccCceEEccccccceEEEEcCH---HHHHHHHHHhhHHHhcCCccceeEEEcceEEEEEECCCcccCc
Confidence 345788999986665 445678999999888743 355555555554 344444 24578999999999999876
Q ss_pred cc
Q 029399 183 SP 184 (194)
Q Consensus 183 ~~ 184 (194)
|+
T Consensus 110 H~ 111 (354)
T PHA02813 110 HR 111 (354)
T ss_pred cc
Confidence 64
No 7
>PHA02869 C4L/C10L-like gene family protein; Provisional
Probab=83.03 E-value=2.2 Score=39.66 Aligned_cols=69 Identities=10% Similarity=0.072 Sum_probs=49.7
Q ss_pred CccccEEeeCCCCC-eeecceeeeeeeecCCCCCcchHHHHHHHHHHH-----hcCC--CCCCCccceEEEeCCCccccc
Q 029399 111 HLQVSTVVDTKTGK-GIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISV-----FSQV--PVENGELIQVLSTGMKKISIT 182 (194)
Q Consensus 111 ~L~rS~V~~~~tG~-~~~s~~RtS~~awL~~~~~~~pvv~rI~~Ria~-----ltGl--~~~~~E~LQV~nYg~Gg~~~~ 182 (194)
....|.+.+..+|. ......|+|++.-+.+. ..+.|.+|++. +-|. .+.-.|.+-+.+|.+|++|..
T Consensus 44 ~~~~s~i~~~~~g~e~~~~~~~ksKqii~e~~-----La~~L~erlr~lLp~~lk~~v~~V~lnerirfyrY~kGq~F~~ 118 (418)
T PHA02869 44 ICEDSKIFFPEKRTELLSIKDRKSKQIVFENS-----LNDDLLKKLHALIYDELSTVVDSVTVENTVTLIMYEKGDYFAR 118 (418)
T ss_pred ccccceeeccccCceeEeeccccceeEEechH-----HHHHHHHHHHHhhhHHhhCccceEEEcceEEEEEECCCCcccc
Confidence 46789999987874 34567899999888753 44445555543 3343 345678999999999999987
Q ss_pred cc
Q 029399 183 SP 184 (194)
Q Consensus 183 ~~ 184 (194)
|+
T Consensus 119 H~ 120 (418)
T PHA02869 119 HR 120 (418)
T ss_pred cc
Confidence 75
No 8
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=51.67 E-value=9.4 Score=32.41 Aligned_cols=88 Identities=10% Similarity=0.050 Sum_probs=48.9
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhc-CCccccEEeeCCCCCeeecceeeeeeeecCCCCCcchHHHHHHHHHH-HhcCCCC-
Q 029399 87 PRILVLHNFLSMEECDYLRAIAR-PHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRIS-VFSQVPV- 163 (194)
Q Consensus 87 P~I~~~hdfLSd~Ecd~Li~lA~-p~L~rS~V~~~~tG~~~~s~~RtS~~awL~~~~~~~pvv~rI~~Ria-~ltGl~~- 163 (194)
|...-+..+||+++|..+.+... .......+..+ ..-.+.|.. --++.+ ++..+.+..-|. +++..|.
T Consensus 2 ~m~lhIp~VLs~a~va~iRa~l~~A~w~dGrat~g----~q~a~vk~n--~qlp~~---s~l~~~vg~~il~al~~~plf 72 (229)
T COG3128 2 IMMLHIPEVLSEAQVARIRAALEQAEWVDGRATQG----PQGAQVKNN--LQLPQD---SALARELGNEILQALTAHPLF 72 (229)
T ss_pred ceEEechhhCCHHHHHHHHHHHhhccccccccccC----cchhhhhcc--ccCCcc---cHHHHHHHHHHHHHHHhchhH
Confidence 34566789999999999987543 22211111111 111222222 123333 455655555544 2333332
Q ss_pred ------CCCccceEEEeCCCcccccc
Q 029399 164 ------ENGELIQVLSTGMKKISITS 183 (194)
Q Consensus 164 ------~~~E~LQV~nYg~Gg~~~~~ 183 (194)
...++-+..+|+.|++|..|
T Consensus 73 f~aALp~t~~~P~Fn~Y~eg~~f~fH 98 (229)
T COG3128 73 FAAALPRTCLPPLFNRYQEGDFFGFH 98 (229)
T ss_pred HHhhcccccCCchhhhccCCCccccc
Confidence 37888999999999999654
No 9
>PHA02708 hypothetical protein; Provisional
Probab=38.85 E-value=32 Score=27.34 Aligned_cols=23 Identities=39% Similarity=0.852 Sum_probs=21.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHhh
Q 029399 5 PSMKIVFGLLTFVTFGMIIGALF 27 (194)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~ 27 (194)
|+.|.+++-+.||.+|...|++.
T Consensus 2 pslRRLl~alalvalgfalgalf 24 (148)
T PHA02708 2 PSLRRLLAALALVALGFALGALF 24 (148)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhc
Confidence 67899999999999999999885
No 10
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.07 E-value=2.2e+02 Score=24.11 Aligned_cols=90 Identities=14% Similarity=0.154 Sum_probs=53.3
Q ss_pred EeecCccEEEEcCCCCHHHHHHHHHHhc----CCccc---cEEeeCCCCCeeecceeeeeeeecCCCCCcchHHHHHHHH
Q 029399 82 VISWSPRILVLHNFLSMEECDYLRAIAR----PHLQV---STVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKR 154 (194)
Q Consensus 82 ~LS~~P~I~~~hdfLSd~Ecd~Li~lA~----p~L~r---S~V~~~~tG~~~~s~~RtS~~awL~~~~~~~pvv~rI~~R 154 (194)
++-..|.+++++|||++||-..+..-.. |+++. -..++. .| - .-++.-++++- .|-.+++...
T Consensus 7 ~V~~~pt~~YIPnfIt~EEe~~~lshIe~ap~pkW~~L~NRRLqNy-GG-v------vh~~glipeel--P~wLq~~v~k 76 (224)
T KOG3200|consen 7 IVKSAPTMIYIPNFITEEEENLYLSHIENAPQPKWRVLANRRLQNY-GG-V------VHKTGLIPEEL--PPWLQYYVDK 76 (224)
T ss_pred EecccceEEEcCCccChHHHHHHHHHHhcCCCchhHHHHhhhhhhc-CC-c------cccCCcCcccc--CHHHHHHHHH
Confidence 4556889999999999999988876553 33221 011111 01 0 01233344332 5667777777
Q ss_pred HHHhcCCCCCCCccceEEEeCCCccccc
Q 029399 155 ISVFSQVPVENGELIQVLSTGMKKISIT 182 (194)
Q Consensus 155 ia~ltGl~~~~~E~LQV~nYg~Gg~~~~ 182 (194)
|.+ .|+=.+.+...-|-.|.+||---+
T Consensus 77 inn-lglF~s~~NHVLVNeY~pgqGImP 103 (224)
T KOG3200|consen 77 INN-LGLFKSPANHVLVNEYLPGQGIMP 103 (224)
T ss_pred hhc-ccccCCCcceeEeecccCCCCcCc
Confidence 774 444334666777888999986433
No 11
>PF01448 ELM2: ELM2 domain; InterPro: IPR000949 The ELM2 (Egl-27 and MTA1 homology 2) domain is a small domain of unknown function. It is found in the MTA1 protein that is part of the NuRD complex []. The domain is usually found to the N terminus of a myb-like DNA binding domain and a GATA binding domain. ELM2, in some instances, is also found associated with the ARID DNA binding domain IPR001606 from INTERPRO. This suggests that ELM2 may also be involved in DNA binding, or perhaps is a protein-protein interaction domain.
Probab=30.57 E-value=56 Score=21.19 Aligned_cols=27 Identities=30% Similarity=0.461 Sum_probs=22.4
Q ss_pred eEEeecCccEEEEcCCCCHHHHHHHHHHhcCC
Q 029399 80 PEVISWSPRILVLHNFLSMEECDYLRAIARPH 111 (194)
Q Consensus 80 ~E~LS~~P~I~~~hdfLSd~Ecd~Li~lA~p~ 111 (194)
.|++=|+| ++.+++.+++..+.+|+.+
T Consensus 28 ~e~lvW~P-----~~~~~d~~l~~yl~~A~s~ 54 (55)
T PF01448_consen 28 EEELVWSP-----NNPLSDRKLEEYLKVAKSS 54 (55)
T ss_pred cceEeECC-----CCCCCHHHHHHHHHHHHhc
Confidence 46667899 5899999999999998753
No 12
>PF04194 PDCD2_C: Programmed cell death protein 2, C-terminal putative domain ; InterPro: IPR007320 PDCD2 is localized predominantly in the cytosol of cells situated at the opposite pole of the germinal centre from the centroblasts as well as in cells in the mantle zone. It has been shown to interact with BCL6, an evolutionarily conserved Kruppel-type zinc finger protein that functions as a strong transcriptional repressor and is required for germinal centre development. The rat homologue, Rp8, is associated with programmed cell death in thymocytes.; GO: 0005737 cytoplasm
Probab=29.80 E-value=63 Score=25.96 Aligned_cols=26 Identities=23% Similarity=0.008 Sum_probs=22.3
Q ss_pred chHHHHHHHHHHHhcCCCCCCCccceEEEeCCCcc
Q 029399 145 YPMIQAIEKRISVFSQVPVENGELIQVLSTGMKKI 179 (194)
Q Consensus 145 ~pvv~rI~~Ria~ltGl~~~~~E~LQV~nYg~Gg~ 179 (194)
|.+..+..+||+.- +=||+||..||.
T Consensus 57 D~~f~~F~~rl~~~---------P~QvlRY~~gG~ 82 (164)
T PF04194_consen 57 DKAFLKFQKRLSRN---------PEQVLRYCRGGK 82 (164)
T ss_pred CHHHHHHHHHHhcC---------CCeEEEECCCCe
Confidence 68899999999853 579999999998
No 13
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=29.72 E-value=58 Score=28.71 Aligned_cols=69 Identities=19% Similarity=0.203 Sum_probs=42.5
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhcC---Ccccc----EEeeCCCCCeeecceeeeeeeecCCCCCcchHHHHHHHHHHHh
Q 029399 86 SPRILVLHNFLSMEECDYLRAIARP---HLQVS----TVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVF 158 (194)
Q Consensus 86 ~P~I~~~hdfLSd~Ecd~Li~lA~p---~L~rS----~V~~~~tG~~~~s~~RtS~~awL~~~~~~~pvv~rI~~Ria~l 158 (194)
=|=|.++|||||.+|-+.|+++... .+..| .-+++++ +....+.||-.-+-++. ..+.+.+|+.+.
T Consensus 71 ~pG~~lie~Fls~~Eea~l~~~~D~~pW~~SQSGRRKQdyGPKv-NFkk~Klkt~~F~G~P~------~~~~v~rrm~~y 143 (306)
T KOG3959|consen 71 IPGLTLIENFLSESEEAKLLNMIDTVPWAQSQSGRRKQDYGPKV-NFKKKKLKTDTFVGMPE------YADMVLRRMSEY 143 (306)
T ss_pred cCCeeehhhhhccchHhHHHHHhccCchhhhcccccccccCCcc-chhhhhhccCcccCCch------HHHHHHHHhhcc
Confidence 3789999999999999999998753 11111 2222222 22344556555444443 456677777876
Q ss_pred cCC
Q 029399 159 SQV 161 (194)
Q Consensus 159 tGl 161 (194)
.++
T Consensus 144 p~l 146 (306)
T KOG3959|consen 144 PVL 146 (306)
T ss_pred chh
Confidence 655
No 14
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=28.86 E-value=64 Score=24.91 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=17.6
Q ss_pred EEEEcCCCCHHHHHHHHHHhcC
Q 029399 89 ILVLHNFLSMEECDYLRAIARP 110 (194)
Q Consensus 89 I~~~hdfLSd~Ecd~Li~lA~p 110 (194)
.+++.|+|+++|++.|.+....
T Consensus 6 yvvi~~~l~~~~~~~l~~~~~~ 27 (211)
T PF05721_consen 6 YVVIRNVLSPEEVERLREELDR 27 (211)
T ss_dssp EEEETTSS-HHHHHHHHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHHHHH
Confidence 3689999999999999887754
No 15
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=28.37 E-value=1.1e+02 Score=20.77 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=20.5
Q ss_pred chHHHHHHHHHHHhcCCCCCCCccceEEEeC
Q 029399 145 YPMIQAIEKRISVFSQVPVENGELIQVLSTG 175 (194)
Q Consensus 145 ~pvv~rI~~Ria~ltGl~~~~~E~LQV~nYg 175 (194)
+..|+.+.++|++..|+|.+. |.+-|+
T Consensus 18 ~~tV~~lK~~i~~~~gip~~~----q~Li~~ 44 (74)
T cd01793 18 QETVSDIKAHVAGLEGIDVED----QVLLLA 44 (74)
T ss_pred cCcHHHHHHHHHhhhCCCHHH----EEEEEC
Confidence 467999999999999998643 445554
No 16
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=27.64 E-value=64 Score=28.75 Aligned_cols=20 Identities=35% Similarity=0.424 Sum_probs=17.5
Q ss_pred EcCCCCHHHHHHHHHHhcCC
Q 029399 92 LHNFLSMEECDYLRAIARPH 111 (194)
Q Consensus 92 ~hdfLSd~Ecd~Li~lA~p~ 111 (194)
..||||+.|+++|.+-|+..
T Consensus 47 ~~~FLS~~Ei~~I~~~~~~~ 66 (284)
T PF07894_consen 47 ERDFLSSEEIQYILENAEDP 66 (284)
T ss_pred CCCCCCHHHHHHHHHhccCC
Confidence 57999999999999999753
No 17
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=27.03 E-value=26 Score=25.51 Aligned_cols=15 Identities=33% Similarity=0.651 Sum_probs=12.8
Q ss_pred EcCCCCHHHHHHHHH
Q 029399 92 LHNFLSMEECDYLRA 106 (194)
Q Consensus 92 ~hdfLSd~Ecd~Li~ 106 (194)
=++++|++|||.+..
T Consensus 25 ~~G~is~~Ecd~Ir~ 39 (81)
T cd08788 25 TRGFFSSYDCDEIRL 39 (81)
T ss_pred HcCCccHhhcchhhc
Confidence 478999999999875
No 18
>PF11406 Tachystatin_A: Antimicrobial peptide tachystatin A; InterPro: IPR022717 Tachystatin A contains a cysteine-stabilised triple-stranded beta-sheet and shows features common to membrane-interactive peptides. Tachystatin A is thought to have an antimicrobial activity similar to defensins.Tachystatin A is also a chitin-binding peptide []. ; PDB: 1CIX_A.
Probab=25.73 E-value=72 Score=20.02 Aligned_cols=20 Identities=20% Similarity=0.097 Sum_probs=9.7
Q ss_pred ccCCCceEEEeCCCCcceEE
Q 029399 55 LQLPRGVTFWDNDKEAELLR 74 (194)
Q Consensus 55 ~~lcrgl~C~y~~~~~pfl~ 74 (194)
...||||.||-+..++.+=+
T Consensus 21 ipccrgltcrsyfpgstygr 40 (44)
T PF11406_consen 21 IPCCRGLTCRSYFPGSTYGR 40 (44)
T ss_dssp ----TT-EEEESSTT-S-EE
T ss_pred ccccCCceeeeecCCcccce
Confidence 34699999998766665533
No 19
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=25.42 E-value=53 Score=22.99 Aligned_cols=17 Identities=12% Similarity=0.215 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 029399 10 VFGLLTFVTFGMIIGAL 26 (194)
Q Consensus 10 ~~~~~~~~~~~~~~~~~ 26 (194)
|+||+.+|++|+..+..
T Consensus 6 l~PL~~~vg~a~~~a~~ 22 (73)
T PF06522_consen 6 LYPLFVIVGVAVGGATF 22 (73)
T ss_pred ccchHHHHHHHHHHHHH
Confidence 78899999988876554
No 20
>PF06624 RAMP4: Ribosome associated membrane protein RAMP4; InterPro: IPR010580 This entry contains Serp1/Ramp4, which has been shown to interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. It has also been shown to protect unfolded target proteins against degradation during ER stress. It may facilitate glycosylation of target proteins after termination of ER stress and may modulate the use of N-glycosylation sites on target proteins [, ].
Probab=25.07 E-value=36 Score=23.56 Aligned_cols=22 Identities=41% Similarity=0.742 Sum_probs=16.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhH
Q 029399 5 PSMKIVFGLLTFVTFGMIIGALFQL 29 (194)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (194)
|--.++++|+.||-+|- +++|+
T Consensus 36 pVgp~~L~l~iFVV~Gs---~ifqi 57 (63)
T PF06624_consen 36 PVGPWLLGLFIFVVCGS---AIFQI 57 (63)
T ss_pred CcCHHHHhhhheeeEcH---HHHHH
Confidence 45578899999998875 45554
No 21
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=24.90 E-value=1.1e+02 Score=25.48 Aligned_cols=31 Identities=23% Similarity=0.408 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHhhhcc
Q 029399 7 MKIVFGLLTFVTFGMIIGALFQLAFIRKLED 37 (194)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (194)
.|.+++|+++..+|-|.||.+=--+.+.+..
T Consensus 8 lr~~l~llal~~a~yivGP~LYWh~~~~~~~ 38 (176)
T PF06364_consen 8 LRVVLVLLALCLAGYIVGPPLYWHLSEGLAA 38 (176)
T ss_pred HHHHHHHHHHHHHhheeCchHHHHHHHhhhc
Confidence 7999999999999999999987777777654
No 22
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=24.58 E-value=44 Score=21.28 Aligned_cols=34 Identities=12% Similarity=0.142 Sum_probs=24.0
Q ss_pred chHHHHHHHHHHHhcCCCCCC----CccceEEEeCCCc
Q 029399 145 YPMIQAIEKRISVFSQVPVEN----GELIQVLSTGMKK 178 (194)
Q Consensus 145 ~pvv~rI~~Ria~ltGl~~~~----~E~LQV~nYg~Gg 178 (194)
..+.+.|.+.+...+|.|.+. -+...--+|+.||
T Consensus 17 ~~l~~~i~~~l~~~~g~~~~~v~V~i~e~~~~~~~~gg 54 (58)
T cd00491 17 RELIERVTEAVSEILGAPEATIVVIIDEMPKENWGIGG 54 (58)
T ss_pred HHHHHHHHHHHHHHhCcCcccEEEEEEEeCchhceECC
Confidence 578888999999999998653 3344445566655
No 23
>KOG2446 consensus Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=21.53 E-value=4.5e+02 Score=25.37 Aligned_cols=88 Identities=16% Similarity=0.213 Sum_probs=47.9
Q ss_pred EcCCCCHHHHHHHHHHhcCC--------ccccEEeeCCCCCee-ecceeeeeeeec-CCCCCcchHHHHHHHHHHHhc--
Q 029399 92 LHNFLSMEECDYLRAIARPH--------LQVSTVVDTKTGKGI-KSNVRTSSGMFL-SPEEKKYPMIQAIEKRISVFS-- 159 (194)
Q Consensus 92 ~hdfLSd~Ecd~Li~lA~p~--------L~rS~V~~~~tG~~~-~s~~RtS~~awL-~~~~~~~pvv~rI~~Ria~lt-- 159 (194)
=.+-++||-.+.|+.+|+.+ |......+...|..+ ...-|.+...-+ -++.+.-|-|...-..|..++
T Consensus 57 Skn~~tdE~v~~l~~laK~~~v~~~~d~mf~Ge~iN~tE~RaVlHvaLRn~~~~pi~~dg~~v~peV~~vL~~ikeFsd~ 136 (546)
T KOG2446|consen 57 SKNRITDEIVDLLLMLAKFRAVEEARDAMFKGEHINFTENRAVLHVALRNRANRPILVDGKDVMPEVENVLDHIKEFSDD 136 (546)
T ss_pred ccccccHHHHHHHHHHHHHhhHHHHHHHHhcCcccCCCCCceeeeHHhhCcccCceecCCcccchhHHHHHHHHHHHHHH
Confidence 35778999999999999753 333333333333322 123444433222 222222344555555555443
Q ss_pred ---CCCCC-CCccc-eEEEeCCCcc
Q 029399 160 ---QVPVE-NGELI-QVLSTGMKKI 179 (194)
Q Consensus 160 ---Gl~~~-~~E~L-QV~nYg~Gg~ 179 (194)
|-... .+..+ +|+|-|+||.
T Consensus 137 i~SG~w~g~tgk~itdVvnIGIGGS 161 (546)
T KOG2446|consen 137 IRSGSWKGYTGKKITDVVNIGIGGS 161 (546)
T ss_pred hhcCCCCCCCCCeeeeEEEeccccc
Confidence 44333 34444 8999999998
No 24
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=20.26 E-value=1.9e+02 Score=19.45 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=20.2
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhc
Q 029399 86 SPRILVLHNFLSMEECDYLRAIAR 109 (194)
Q Consensus 86 ~P~I~~~hdfLSd~Ecd~Li~lA~ 109 (194)
+..|+.++.|++++|.+.|.+...
T Consensus 60 ~~pvi~i~~~l~~~d~~~i~~~i~ 83 (85)
T cd05568 60 DKPVIVVSPILTEEDIKKIRKFIK 83 (85)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHh
Confidence 446889999999999999988653
Done!