Query 029399
Match_columns 194
No_of_seqs 182 out of 822
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 20:12:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029399.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029399hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jig_A Prolyl-4 hydroxylase; h 99.9 2.2E-27 7.4E-32 197.7 12.1 118 74-193 7-141 (224)
2 3itq_A Prolyl 4-hydroxylase, a 99.9 3.3E-26 1.1E-30 191.7 8.0 108 78-193 30-151 (216)
3 3dkq_A PKHD-type hydroxylase S 99.3 9.8E-12 3.4E-16 105.6 7.6 104 81-193 13-139 (243)
4 2hbt_A EGL nine homolog 1; pro 98.6 1.7E-07 5.7E-12 79.3 9.9 105 87-193 26-152 (247)
5 2iuw_A Alkylated repair protei 92.1 1.2 4E-05 36.8 10.1 84 87-178 40-137 (238)
6 3s57_A Alpha-ketoglutarate-dep 81.2 15 0.00053 29.3 10.3 88 84-179 7-112 (204)
7 3tht_A Alkylated DNA repair pr 72.0 14 0.00049 32.1 8.1 26 84-109 108-133 (345)
8 3kt7_A PKHD-type hydroxylase T 46.1 76 0.0026 30.1 8.4 100 86-193 32-156 (633)
9 1x5v_A PCFK1; inhibitory cysti 46.0 7.5 0.00026 22.5 1.0 12 55-66 16-27 (34)
10 3i3q_A Alpha-ketoglutarate-dep 44.3 56 0.0019 26.2 6.5 32 147-178 85-116 (211)
11 1o51_A Hypothetical protein TM 40.6 23 0.00078 26.0 3.3 74 102-175 33-114 (114)
12 2lx0_A Membrane fusion protein 30.0 50 0.0017 18.6 2.7 20 9-28 11-30 (32)
13 1q90_G Cytochrome B6F complex 25.6 66 0.0023 19.2 2.9 24 6-29 6-29 (37)
No 1
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A
Probab=99.95 E-value=2.2e-27 Score=197.72 Aligned_cols=118 Identities=36% Similarity=0.545 Sum_probs=110.4
Q ss_pred EeecceeEEeecCccEEEEcCCCCHHHHHHHHHHhcCCccccEEeeCCCCCeeecceeeeeeeecCCCCCcchHHHHHHH
Q 029399 74 RLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEK 153 (194)
Q Consensus 74 ~LaP~K~E~LS~~P~I~~~hdfLSd~Ecd~Li~lA~p~L~rS~V~~~~tG~~~~s~~RtS~~awL~~~~~~~pvv~rI~~ 153 (194)
.++|.|+|+||++|+|+++|||||++||++|++++++++++|++.+..+|+...+.+|+|+++||+..+ ++++++|.+
T Consensus 7 ~~~~~k~e~ls~~P~i~~~~~fLs~~Ec~~li~~~~~~~~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~--~~~~~~i~~ 84 (224)
T 2jig_A 7 EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGE--DSVISKIEK 84 (224)
T ss_dssp CCCCCCEEEEETTTTEEEETTCSCHHHHHHHHHHHGGGCEECEEEETTTTEEEECSSBCSEEEECCTTC--SHHHHHHHH
T ss_pred cccCcceEEEeCCCCEEEEcccCCHHHHHHHHHHhhccCeeeeeecCCCCcccccCCEEEeeeEecCCC--CHHHHHHHH
Confidence 578999999999999999999999999999999999999999999987788888899999999999865 799999999
Q ss_pred HHHHhcCCCCCCCccceEEEeCCCcccc-----------------ccceeEEEEecc
Q 029399 154 RISVFSQVPVENGELIQVLSTGMKKISI-----------------TSPITITFQTLS 193 (194)
Q Consensus 154 Ria~ltGl~~~~~E~LQV~nYg~Gg~~~-----------------~~~~~~~f~~~~ 193 (194)
||++++|+|....|.+||+||++||+|. .+|+.|+.+||+
T Consensus 85 ri~~~~gl~~~~~e~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~~~R~~T~l~YLn 141 (224)
T 2jig_A 85 RVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQRVVTMLMYLT 141 (224)
T ss_dssp HHHHHHTCCGGGBCCCEEEEEETTCCEEEECCSSCCTTSSSCCCCSCEEEEEEEECS
T ss_pred HHHHHhCCCcccccceEEEecCCCccccCcccCCCCccccccccCCCeEEEEEEEec
Confidence 9999999999999999999999999973 468899999997
No 2
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str}
Probab=99.93 E-value=3.3e-26 Score=191.73 Aligned_cols=108 Identities=32% Similarity=0.402 Sum_probs=93.7
Q ss_pred ceeEEeecCccEEEEcCCCCHHHHHHHHHHhcCCccccEEeeCCCCCeeecceeeeeeeecCCCCCcchHHHHHHHHHHH
Q 029399 78 VKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISV 157 (194)
Q Consensus 78 ~K~E~LS~~P~I~~~hdfLSd~Ecd~Li~lA~p~L~rS~V~~~~tG~~~~s~~RtS~~awL~~~~~~~pvv~rI~~Ria~ 157 (194)
++++++|++|+|++||||||++||++|+++|++++++|+|... ...+++|+|+++||++ ++++++|++||++
T Consensus 30 v~v~~l~~~P~i~~~~~fLs~~Ec~~Li~~a~~~l~~s~v~~~----~~~~~~RtS~~~wl~~----~~~v~~i~~Ri~~ 101 (216)
T 3itq_A 30 IQIISKFEEPLIVVLGNVLSDEECDELIELSKSKLARSKVGSS----RDVNDIRTSSGAFLDD----NELTAKIEKRISS 101 (216)
T ss_dssp EEEEEEETTTTEEEEESCSCHHHHHHHHHHHHHHHC------------CCCCGGGTTCEECCC----CHHHHHHHHHHHH
T ss_pred EEEEEeeCCCCEEEECCcCCHHHHHHHHHHhhcccccceeccC----CccCCcEeeeeEEeCC----cHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999998321 3467899999999987 4999999999999
Q ss_pred hcCCCCCCCccceEEEeCCCccccc--------------cceeEEEEecc
Q 029399 158 FSQVPVENGELIQVLSTGMKKISIT--------------SPITITFQTLS 193 (194)
Q Consensus 158 ltGl~~~~~E~LQV~nYg~Gg~~~~--------------~~~~~~f~~~~ 193 (194)
++|+|.+++|.+||+||++||+|.. +|+.|+.+||+
T Consensus 102 ~~gl~~~~~E~lqv~~Y~~G~~y~~H~D~~~~~~~~~~~~R~~T~l~YLn 151 (216)
T 3itq_A 102 IMNVPASHGEGLHILNYEVDQQYKAHYDYFAEHSRSAANNRISTLVMYLN 151 (216)
T ss_dssp HHTSCGGGBCCCEEEEECBTCCEEEECSSCCTTSGGGGGCEEEEEEEECS
T ss_pred hcCceeccccceeEEEeCCCCccccccCCCcCCCcccCCceEEEEEEecc
Confidence 9999999999999999999999743 58899999997
No 3
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155}
Probab=99.25 E-value=9.8e-12 Score=105.60 Aligned_cols=104 Identities=12% Similarity=-0.051 Sum_probs=78.6
Q ss_pred EEeecCccEEEEcCCCCHHHHHHHHHHhcC-CccccEEeeCCCCCeeecceeeeeeeecCCCCCcchHHHHHHHHHHHhc
Q 029399 81 EVISWSPRILVLHNFLSMEECDYLRAIARP-HLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFS 159 (194)
Q Consensus 81 E~LS~~P~I~~~hdfLSd~Ecd~Li~lA~p-~L~rS~V~~~~tG~~~~s~~RtS~~awL~~~~~~~pvv~rI~~Ria~lt 159 (194)
|-+-.++.++++|||||++||++|+++++. .+.++.+. +... ..+..++.|+..+ +|++++|.+||.+.+
T Consensus 13 ~~~~~~~~i~~i~dvLs~~Ec~~li~~~e~~~~~dg~~t----~g~~--~~~vr~n~~l~~d---~~~~~~l~~~i~~~l 83 (243)
T 3dkq_A 13 ENLYFQGMLIEIPNVFSKQEVSHLREQLDARRWIDGNQT----SGAM--ATTRKRNQQLDKD---DPVAVALGQQIMDRL 83 (243)
T ss_dssp -CCCCBTTBEEECCSSCHHHHHHHHHHHHTSCCEEECCC----SSBS--SCCCEEEEECCTT---CHHHHHHHHHHHHHH
T ss_pred cccccCCCEEEECCCCCHHHHHHHHHHHhhCCCccCccc----CCCc--cccceeeeEECCC---CHHHHHHHHHHHHHH
Confidence 445578999999999999999999999963 33332222 1112 2344556788854 699999999999999
Q ss_pred CCC--------CCCCccceEEEeCCCcccccc--------------ceeEEEEecc
Q 029399 160 QVP--------VENGELIQVLSTGMKKISITS--------------PITITFQTLS 193 (194)
Q Consensus 160 Gl~--------~~~~E~LQV~nYg~Gg~~~~~--------------~~~~~f~~~~ 193 (194)
+.. ....|++|+++|++|++|..| +..|+-+||+
T Consensus 84 ~~~~~f~~~~L~~~~e~~~~~rY~~G~~y~~H~D~~~~~~~~~~~~r~~T~~lYLn 139 (243)
T 3dkq_A 84 LAHPQFVSAALPLQFYPPLFNRYQGGETFGYHIDNAIRSTPDGMIRTDLSATLFLS 139 (243)
T ss_dssp HTCHHHHHHHCEEEEEEEEEEEECTTCEEEEECBCSEEEETTEEEECCEEEEEECS
T ss_pred ccCcchhhcccccccccceEEEECCCCeeccCCCCCCCCCCCccccceEEEEEEeC
Confidence 877 246889999999999998555 5778888886
No 4
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*
Probab=98.62 E-value=1.7e-07 Score=79.30 Aligned_cols=105 Identities=11% Similarity=0.087 Sum_probs=72.3
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhcC-----CccccEEeeCCCCCeeecceeeeeeeecCCCCCcch----HHHHHHHHHHH
Q 029399 87 PRILVLHNFLSMEECDYLRAIARP-----HLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYP----MIQAIEKRISV 157 (194)
Q Consensus 87 P~I~~~hdfLSd~Ecd~Li~lA~p-----~L~rS~V~~~~tG~~~~s~~RtS~~awL~~~~~~~p----vv~rI~~Ria~ 157 (194)
+-+++++|||+++||+.|++.++. .++++.+.+. +.......|+++.+|+...+...+ ..++|++.+..
T Consensus 26 ~g~~Vid~fLs~ee~~~L~~~~~~~~~~g~~~~a~i~~~--~~~~~~~iR~d~i~wl~~~~~~~~~~~~l~~~i~~l~~~ 103 (247)
T 2hbt_A 26 HGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQ--KSDSSKDIRGDKITWIEGKEPGCETIGLLMSSMDDLIRH 103 (247)
T ss_dssp TSEEEESSSSCHHHHHHHHHHHHHHHHTTCSCSCCEEEC--CSSSTTCEECCEEEEECSCSTTCHHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCHHHHHHHHHHHHhhhhcCCccccccccc--cccccccccccceeeecccccchhHHHHHHHHHHHHHHH
Confidence 346789999999999999998864 5777777652 123557899999999997641122 34455554444
Q ss_pred hcCC-CCC---CCccceEEEeCC-Ccccccc--------ceeEEEEecc
Q 029399 158 FSQV-PVE---NGELIQVLSTGM-KKISITS--------PITITFQTLS 193 (194)
Q Consensus 158 ltGl-~~~---~~E~LQV~nYg~-Gg~~~~~--------~~~~~f~~~~ 193 (194)
+.+. ... ..+.+|+++|.+ |++|-.| |..|+-+||.
T Consensus 104 ln~~lGl~~i~~~~e~~~~~Y~~~G~~y~~H~D~~~~~~R~~T~vlYLN 152 (247)
T 2hbt_A 104 CNGKLGSYKINGRTKAMVACYPGNGTGYVRHVDNPNGDGRCVTCIYYLN 152 (247)
T ss_dssp TTTTSTTCCEEEECCEEEEEECSSSCCEEEECSSCSCCSEEEEEEEECB
T ss_pred HhhhcCcccccccceEEEEEecCCCCcccccccCCCCCCceEEEEEEeC
Confidence 3331 212 136699999997 9988544 6788888885
No 5
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10
Probab=92.11 E-value=1.2 Score=36.80 Aligned_cols=84 Identities=12% Similarity=0.128 Sum_probs=50.4
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhc--CCccccEEeeCCCCCeeecceeeeeeeecCCC----------C--CcchHHHHHH
Q 029399 87 PRILVLHNFLSMEECDYLRAIAR--PHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPE----------E--KKYPMIQAIE 152 (194)
Q Consensus 87 P~I~~~hdfLSd~Ecd~Li~lA~--p~L~rS~V~~~~tG~~~~s~~RtS~~awL~~~----------~--~~~pvv~rI~ 152 (194)
|-+.+++|||+++|.+.|.+.-. -.++...... -|+......++ +|+.+. . .=.+.+..|.
T Consensus 40 ~gl~~~~~fl~~~e~~~Ll~~l~~~~~w~~~~~~~--~g~~~~~~R~~---~~~g~~~Y~Ys~~~~~~~p~wp~~l~~l~ 114 (238)
T 2iuw_A 40 SRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIR--EDITYQQPRLT---AWYGELPYTYSRITMEPNPHWHPVLRTLK 114 (238)
T ss_dssp EEEEEETTSSCHHHHHHHHHHHHHHSCCBCCEEES--SSCEEECSSEE---EEEECCCTTSCHHHHCCBSSCCHHHHHHH
T ss_pred CcEEEECCCCCHHHHHHHHHHHHHhCCCccCceec--CCcccccCCee---EEcCCCccccCCcccCCCCCCCHHHHHHH
Confidence 45999999999999999987642 2333333221 13333222222 243310 0 0036788889
Q ss_pred HHHHHhcCCCCCCCccceEEEeCCCc
Q 029399 153 KRISVFSQVPVENGELIQVLSTGMKK 178 (194)
Q Consensus 153 ~Ria~ltGl~~~~~E~LQV~nYg~Gg 178 (194)
+++++.+|.+.+ ..-|..|..|+
T Consensus 115 ~~~~~~~g~~~n---~~LvN~Y~~G~ 137 (238)
T 2iuw_A 115 NRIEENTGHTFN---SLLCNLYRNEK 137 (238)
T ss_dssp HHHHHHHSCCCC---EEEEEEECSTT
T ss_pred HHHHHHhCCCCC---EEEEEEECCCC
Confidence 999988886543 45577799887
No 6
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*
Probab=81.24 E-value=15 Score=29.27 Aligned_cols=88 Identities=10% Similarity=-0.034 Sum_probs=52.3
Q ss_pred ecCccEEEEcCCCCHHHHHHHHHHh--cCCc---cccEEeeCCCCCeeecceeeeeeeecCCCC-------------Ccc
Q 029399 84 SWSPRILVLHNFLSMEECDYLRAIA--RPHL---QVSTVVDTKTGKGIKSNVRTSSGMFLSPEE-------------KKY 145 (194)
Q Consensus 84 S~~P~I~~~hdfLSd~Ecd~Li~lA--~p~L---~rS~V~~~~tG~~~~s~~RtS~~awL~~~~-------------~~~ 145 (194)
--+=..+.|.+||+++|++.|.+.- +..+ +...+.- -|+.... -|. .+|..+.. .=.
T Consensus 7 ~~~~~~~~~~~~l~~~~a~~l~~~l~~~~~w~~~~~~~~~~--~gk~~~~-pR~--~~wyg~~~~~Y~Ysg~~~~~~pwp 81 (204)
T 3s57_A 7 RAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQV--FGKWHSV-PRK--QATYGDAGLTYTFSGLTLSPKPWI 81 (204)
T ss_dssp EETTEEEEEEECSCHHHHHHHHHHHHHHCCCCCGGGGEEEE--TTEEEEC-SSE--EEEEECTTCCEEETTEEECCEECC
T ss_pred eeCCceEEecCcCCHHHHHHHHHHHHHhCCCCCcccceEEE--CCeEecc-CcE--EEEECCCCCCcccCCCcccCCCCC
Confidence 3444567899999999999987743 3444 3222221 1332222 121 24443211 004
Q ss_pred hHHHHHHHHHHHhcCCCCCCCccceEEEeCCCcc
Q 029399 146 PMIQAIEKRISVFSQVPVENGELIQVLSTGMKKI 179 (194)
Q Consensus 146 pvv~rI~~Ria~ltGl~~~~~E~LQV~nYg~Gg~ 179 (194)
|.+..|.+++++.+|.+.+. .-|..|..|+-
T Consensus 82 ~~L~~l~~~~~~~~g~~~n~---~LvN~Y~~G~d 112 (204)
T 3s57_A 82 PVLERIRDHVSGVTGQTFNF---VLINRYKDGSD 112 (204)
T ss_dssp HHHHHHHHHHHHHHCCCCSE---EEEEEESSTTC
T ss_pred HHHHHHHHHHHHHhCCCCce---eEEEEECCCCC
Confidence 78999999999998876544 34667988873
No 7
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=72.01 E-value=14 Score=32.11 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=21.1
Q ss_pred ecCccEEEEcCCCCHHHHHHHHHHhc
Q 029399 84 SWSPRILVLHNFLSMEECDYLRAIAR 109 (194)
Q Consensus 84 S~~P~I~~~hdfLSd~Ecd~Li~lA~ 109 (194)
+.-|=+.+++||||++|.+.|++...
T Consensus 108 ~lp~Gl~~~p~fis~~Ee~~Ll~~i~ 133 (345)
T 3tht_A 108 ALPPGLMVVEEIISSEEEKMLLESVD 133 (345)
T ss_dssp SCCTTEEEETTCSCHHHHHHHHTTCC
T ss_pred cCCCceEEEcCcCCHHHHHHHHHhcc
Confidence 34556999999999999999876543
No 8
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A
Probab=46.08 E-value=76 Score=30.06 Aligned_cols=100 Identities=8% Similarity=0.022 Sum_probs=54.8
Q ss_pred Ccc-EEEEcCCCCHHHHHHHHHHhcCCccccEEeeCCCCCeeecceeeeeeeecCCCC-------CcchHHH--------
Q 029399 86 SPR-ILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEE-------KKYPMIQ-------- 149 (194)
Q Consensus 86 ~P~-I~~~hdfLSd~Ecd~Li~lA~p~L~rS~V~~~~tG~~~~s~~RtS~~awL~~~~-------~~~pvv~-------- 149 (194)
+|+ -++++|||.++-.+.+.+-....+.-.... ..-+..-++.+|.... ...|.+.
T Consensus 32 ~PFpH~VIdnfl~d~lle~V~~Efp~~i~f~~Ke--------tDlYk~~QsgdLanl~~l~~e~l~~lp~l~~Lr~~L~S 103 (633)
T 3kt7_A 32 QPYNWGTIHELVNDDLLRAVRKEIETEIHFTKKE--------TDIYRVNQSGDLANLSGLDWDDLSRLPNLFKLRQILYS 103 (633)
T ss_dssp SSSCCEEESSCBCHHHHHHHHHHHHHHCCCEEEE--------CSSEEEEECCCTTCTTSCCTTCCTTCHHHHHHHHHHTS
T ss_pred CCcceEEECCCCCHHHHHHHHHHhhhccCccccc--------ccccceeccccccccccCChhhhccChHHHHHHHHHhc
Confidence 444 468999999988888877654222111000 0112222223332110 0124433
Q ss_pred -HHHHHHHHhcCC-CCC-CCccceEEEeCCCcccccc------ceeEEEEecc
Q 029399 150 -AIEKRISVFSQV-PVE-NGELIQVLSTGMKKISITS------PITITFQTLS 193 (194)
Q Consensus 150 -rI~~Ria~ltGl-~~~-~~E~LQV~nYg~Gg~~~~~------~~~~~f~~~~ 193 (194)
.+.+-++.+||+ +.. .--.+++..|+.|++|-+| |.-|+-+||.
T Consensus 104 ~~Fr~~Ls~iTGi~~Lsg~~~D~~~a~Y~~G~fL~~H~D~~~~RrvS~VLYLN 156 (633)
T 3kt7_A 104 KQYRDFFGYVTKAGKLSGSKTDMSINTYTKGCHLLTHDDVIGSRRISFILYLP 156 (633)
T ss_dssp HHHHHHHHHHHTCCCCCSSCCCEEEEEECTTCEEEEECCCCTTEEEEEEEECS
T ss_pred HHHHHHHHHHhCCcccCCCceeEEEEEeCCCCeeeecCCCCCCeEEEEEEEcC
Confidence 344456688998 453 2334899999999998555 4556666764
No 9
>1x5v_A PCFK1; inhibitory cystine knot, toxin; HET: HSL; NMR {Psalmopoeus cambridgei}
Probab=45.97 E-value=7.5 Score=22.48 Aligned_cols=12 Identities=17% Similarity=0.016 Sum_probs=9.8
Q ss_pred ccCCCceEEEeC
Q 029399 55 LQLPRGVTFWDN 66 (194)
Q Consensus 55 ~~lcrgl~C~y~ 66 (194)
..-|+||-|||-
T Consensus 16 ~~cc~glqcryg 27 (34)
T 1x5v_A 16 NPCCRGLQCRYG 27 (34)
T ss_dssp CCBCTTEEEETE
T ss_pred CccceeeeeccC
Confidence 347999999995
No 10
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...
Probab=44.27 E-value=56 Score=26.23 Aligned_cols=32 Identities=6% Similarity=-0.031 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCccceEEEeCCCc
Q 029399 147 MIQAIEKRISVFSQVPVENGELIQVLSTGMKK 178 (194)
Q Consensus 147 vv~rI~~Ria~ltGl~~~~~E~LQV~nYg~Gg 178 (194)
.+..+.+|+...+|++.-..+..-|..|..|+
T Consensus 85 ~L~~l~~~~~~~~g~~~~~pn~~LvN~Y~~G~ 116 (211)
T 3i3q_A 85 SFHNLCQRAATAAGYPDFQPDACLINRYAPGA 116 (211)
T ss_dssp HHHHHHHHHHHHTTCTTCCCCEEEEEEECTTC
T ss_pred HHHHHHHHHHHhcCCCCcCCCEEEEEEEcCCC
Confidence 78889999998888754444556677798887
No 11
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=40.64 E-value=23 Score=25.97 Aligned_cols=74 Identities=23% Similarity=0.168 Sum_probs=39.0
Q ss_pred HHHHHHhc-CCccccEEeeCCCCCeeecceeeeeeeecCCCC-------CcchHHHHHHHHHHHhcCCCCCCCccceEEE
Q 029399 102 DYLRAIAR-PHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEE-------KKYPMIQAIEKRISVFSQVPVENGELIQVLS 173 (194)
Q Consensus 102 d~Li~lA~-p~L~rS~V~~~~tG~~~~s~~RtS~~awL~~~~-------~~~pvv~rI~~Ria~ltGl~~~~~E~LQV~n 173 (194)
+.|++.++ ..+.-+||..+-.|.......++++.-.+..+- +..+-++++-.++..+..-..-..|+.||++
T Consensus 33 ~~Iv~~~~~~GiaGaTV~rgi~GfG~~g~ih~~~~l~ls~dlPV~Ie~Vd~~eki~~~l~~l~~~v~~Glvt~e~V~V~r 112 (114)
T 1o51_A 33 EYLVKRAYELGMKGVTVYRGIMGFGHKRHMHRSDFFSLSPDLPIVLEIVDEEERINLFLKEIDNIDFDGLVFTADVNVVK 112 (114)
T ss_dssp HHHHHHHHHTTCSCCEEEECSCCCCC-------------CCCEEEEEEEECHHHHHHHHHHHHTCCCCSEEEEEEEECCC
T ss_pred HHHHHHHHHCCCCeEEEEcCcEEECCCCCEEccceeecCCCCCEEEEEEcCHHHHHHHHHHHHHHhCCCEEEEEEEEEEe
Confidence 45666654 467788998876666544445554433333221 1245677787888877764444688888988
Q ss_pred eC
Q 029399 174 TG 175 (194)
Q Consensus 174 Yg 175 (194)
|+
T Consensus 113 ~~ 114 (114)
T 1o51_A 113 MG 114 (114)
T ss_dssp --
T ss_pred cC
Confidence 85
No 12
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=29.98 E-value=50 Score=18.60 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 029399 9 IVFGLLTFVTFGMIIGALFQ 28 (194)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~ 28 (194)
.+..||||..+|.-.--.+|
T Consensus 11 glvalltflafgfwlfkylq 30 (32)
T 2lx0_A 11 GLVALLTFLAFGFWLFKYLQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 35678899998876544333
No 13
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=25.60 E-value=66 Score=19.15 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=19.0
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhH
Q 029399 6 SMKIVFGLLTFVTFGMIIGALFQL 29 (194)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~ 29 (194)
-.-||+||+...-.|-...|..|.
T Consensus 6 L~GIVlGlipvtlaGLfv~Ay~Qy 29 (37)
T 1q90_G 6 LCGIVLGLVPVTIAGLFVTAYLQY 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHhhHHHHHHHHHHHHHHHH
Confidence 346899998888888888888775
Done!