Query 029402
Match_columns 194
No_of_seqs 169 out of 1232
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 12:21:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029402.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029402hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02547 dUTP pyrophosphatase 100.0 2.2E-49 4.7E-54 320.7 18.2 154 31-194 1-154 (157)
2 PHA03094 dUTPase; Provisional 100.0 5E-48 1.1E-52 308.6 17.8 141 54-194 3-143 (144)
3 PHA02703 ORF007 dUTPase; Provi 100.0 8.8E-47 1.9E-51 307.7 17.1 140 55-194 12-151 (165)
4 COG0756 Dut dUTPase [Nucleotid 100.0 7.7E-47 1.7E-51 301.6 15.7 137 58-194 8-147 (148)
5 TIGR00576 dut deoxyuridine 5'- 100.0 1.2E-45 2.6E-50 293.6 16.7 138 57-194 1-141 (141)
6 PRK00601 dut deoxyuridine 5'-t 100.0 4.6E-45 1E-49 293.2 16.9 139 56-194 7-149 (150)
7 PTZ00143 deoxyuridine 5'-triph 100.0 3.9E-44 8.4E-49 289.5 16.0 137 57-194 3-154 (155)
8 PRK13956 dut deoxyuridine 5'-t 100.0 2.2E-42 4.7E-47 277.2 14.3 134 56-194 6-147 (147)
9 KOG3370 dUTPase [Nucleotide tr 100.0 7.9E-42 1.7E-46 268.1 7.7 139 56-194 2-140 (140)
10 PF00692 dUTPase: dUTPase; In 100.0 9.7E-39 2.1E-43 248.3 12.4 128 65-193 2-129 (129)
11 PHA03124 dUTPase; Provisional 100.0 1.1E-35 2.4E-40 265.8 14.6 134 57-194 266-418 (418)
12 PHA03126 dUTPase; Provisional 100.0 2E-31 4.4E-36 234.9 13.1 125 65-194 168-326 (326)
13 PHA03123 dUTPase; Provisional 100.0 5.4E-31 1.2E-35 236.4 14.0 127 63-194 233-401 (402)
14 PHA03130 dUTPase; Provisional 100.0 8.8E-31 1.9E-35 232.3 13.6 125 64-194 203-368 (368)
15 PHA03127 dUTPase; Provisional 100.0 3E-30 6.5E-35 228.3 13.3 117 75-194 173-322 (322)
16 PHA03129 dUTPase; Provisional 100.0 4E-29 8.8E-34 227.0 13.2 124 66-194 279-436 (436)
17 PHA03131 dUTPase; Provisional 100.0 4.4E-28 9.5E-33 212.7 13.7 99 65-169 123-222 (286)
18 cd07557 trimeric_dUTPase Trime 99.9 1.1E-27 2.5E-32 175.6 10.1 88 77-165 1-92 (92)
19 PHA03131 dUTPase; Provisional 99.9 3.3E-25 7.1E-30 194.6 15.4 126 53-184 4-129 (286)
20 PHA01707 dut 2'-deoxyuridine 5 99.9 1.7E-23 3.8E-28 169.5 11.9 85 85-171 53-137 (158)
21 TIGR02274 dCTP_deam deoxycytid 99.9 4.3E-23 9.2E-28 169.7 13.8 104 84-193 68-173 (179)
22 PRK00416 dcd deoxycytidine tri 99.9 4.9E-21 1.1E-25 157.3 13.9 87 84-171 68-154 (177)
23 COG0717 Dcd Deoxycytidine deam 99.8 6.4E-19 1.4E-23 146.1 12.6 106 64-170 50-157 (183)
24 PHA03129 dUTPase; Provisional 99.8 1.7E-19 3.8E-24 164.3 8.7 77 94-174 77-159 (436)
25 PRK02253 deoxyuridine 5'-triph 99.8 5.4E-19 1.2E-23 144.2 10.7 85 85-171 70-154 (167)
26 PRK07559 2'-deoxycytidine 5'-t 99.6 1.7E-15 3.7E-20 137.1 10.2 84 84-169 79-170 (365)
27 PHA03127 dUTPase; Provisional 99.5 3.1E-14 6.8E-19 126.6 9.7 75 94-169 63-138 (322)
28 PHA03128 dUTPase; Provisional 99.4 3.6E-12 7.9E-17 114.3 10.3 94 65-166 202-296 (376)
29 PRK07559 2'-deoxycytidine 5'-t 99.3 7.9E-12 1.7E-16 113.4 9.6 83 85-171 246-338 (365)
30 PHA03128 dUTPase; Provisional 99.3 6.7E-11 1.4E-15 106.2 13.3 127 54-189 86-212 (376)
31 PHA03125 dUTPase; Provisional 99.1 2.7E-10 5.9E-15 102.1 10.1 95 65-168 247-342 (376)
32 PF06559 DCD: 2'-deoxycytidine 99.0 8.1E-10 1.8E-14 99.0 8.5 82 85-168 79-168 (364)
33 PHA03125 dUTPase; Provisional 98.9 2.8E-08 6E-13 89.3 13.2 101 76-181 150-250 (376)
34 PHA03126 dUTPase; Provisional 98.7 8.7E-08 1.9E-12 85.5 9.9 82 94-177 53-151 (326)
35 PHA03123 dUTPase; Provisional 97.6 0.00031 6.6E-09 64.4 8.6 78 94-172 85-164 (402)
36 PHA03130 dUTPase; Provisional 97.4 0.00054 1.2E-08 62.1 8.0 74 94-171 59-133 (368)
37 PF04797 Herpes_ORF11: Herpesv 97.0 0.017 3.8E-07 52.8 13.0 85 78-167 264-351 (379)
38 PF06559 DCD: 2'-deoxycytidine 96.8 0.0077 1.7E-07 54.7 8.6 83 86-171 247-338 (364)
39 PF05784 Herpes_UL82_83: Betah 96.4 0.0008 1.7E-08 61.2 0.0 87 74-167 256-342 (348)
40 PHA03365 hypothetical protein; 92.5 1.4 3E-05 41.2 10.2 78 85-167 292-371 (419)
41 PF04489 DUF570: Protein of un 83.6 19 0.00042 33.8 11.3 92 67-165 335-428 (429)
42 PF06284 Cytomega_UL84: Cytome 83.1 3.6 7.8E-05 38.8 6.4 84 75-168 372-455 (530)
43 PHA03124 dUTPase; Provisional 76.4 5.1 0.00011 37.3 5.1 72 95-169 46-131 (418)
44 PF05784 Herpes_UL82_83: Betah 58.9 3.1 6.8E-05 38.0 0.0 73 81-153 13-90 (348)
45 PF09160 FimH_man-bind: FimH, 57.1 12 0.00026 30.4 3.0 95 77-171 13-135 (147)
46 cd00235 TLP-20 Telokin-like pr 40.4 59 0.0013 25.1 4.4 27 137-165 80-106 (108)
47 PF06030 DUF916: Bacterial pro 39.2 43 0.00093 25.8 3.6 30 84-115 84-114 (121)
48 COG4148 ModC ABC-type molybdat 36.7 52 0.0011 30.1 4.1 65 102-168 18-85 (352)
49 COG1124 DppF ABC-type dipeptid 35.0 38 0.00082 29.8 2.9 65 99-169 24-92 (252)
50 COG4525 TauB ABC-type taurine 34.9 27 0.00059 30.4 2.0 42 100-142 23-64 (259)
51 PF03712 Cu2_monoox_C: Copper 31.2 2.3E+02 0.0051 22.5 6.8 20 76-95 3-22 (156)
52 COG3638 ABC-type phosphate/pho 27.8 41 0.00089 29.7 1.9 52 90-143 13-64 (258)
53 PF00818 Ice_nucleation: Ice n 25.2 32 0.00069 17.8 0.5 6 188-193 1-6 (16)
54 PF06088 TLP-20: Nucleopolyhed 22.8 1.5E+02 0.0032 24.6 4.2 28 138-167 81-108 (169)
55 COG4988 CydD ABC-type transpor 21.8 1.1E+02 0.0024 29.9 3.8 58 90-149 330-390 (559)
56 PHA02762 hypothetical protein; 21.3 2.5E+02 0.0054 19.2 4.4 37 131-169 4-49 (62)
57 PF05726 Pirin_C: Pirin C-term 20.6 3.5E+02 0.0075 19.7 5.8 64 86-166 3-68 (104)
58 PF07385 DUF1498: Protein of u 20.1 2E+02 0.0044 24.9 4.7 33 86-118 147-179 (225)
No 1
>PLN02547 dUTP pyrophosphatase
Probab=100.00 E-value=2.2e-49 Score=320.74 Aligned_cols=154 Identities=84% Similarity=1.239 Sum_probs=146.7
Q ss_pred ccccCCCCCccceeccCccccCCCceEEEEEccCCCCCCcccCCCceeeeEEcCcceEEcCCCEEEEEcCceeecCCCeE
Q 029402 31 LEVKEPSAKIPKLHQNGVEHDNTSSLLRVKKLSEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTY 110 (194)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~vk~l~~~a~lP~r~t~~dAG~DL~a~~d~~I~Pg~~~lV~Tgi~v~iP~g~~ 110 (194)
+.+.||.+|++|- -..++|++++++|+||+|++++||||||++++|++|+|++.++|+||+++++|+||+
T Consensus 1 ~~~~~~~~~~~~~----------~~~i~vk~l~~~a~lP~r~t~g~AG~DL~~~~d~~i~P~~~~li~tgi~v~iP~g~~ 70 (157)
T PLN02547 1 PAVQEPPPKIQKP----------SPLLRVKKLSEKATLPSRGSALAAGYDLSSAYDTVVPARGKALVPTDLSIAIPEGTY 70 (157)
T ss_pred CcccCCCccccCC----------CceEEEEEeCCCCCCCCcCCCCccCeeEecCCCeEECCCCEEEEEeceEEEcCCCeE
Confidence 3567999998863 456999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCccccccccccceEEcCCCCCceEEEEEeCCCCcEEeeCCCEEEEEEEeecccccEEEeccCCcccCCCCCCC
Q 029402 111 AHIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIVTPDVLEVQHLDSTVRGEGGFG 190 (194)
Q Consensus 111 g~I~pRSsla~K~gL~v~~GvIDsgYrGeI~v~L~N~s~~~~~I~~GdRIAQLV~~~~~~~~~~ev~~l~~t~RG~~GFG 190 (194)
|+|++||||++|++|.+.+|+||+||+|||++.|+|++++++.|++|+|||||||.++..+++++|++|++|+||+||||
T Consensus 71 g~i~~RSgla~k~gi~~~~GvID~~Y~Gei~v~l~N~~~~~~~I~~G~RIaQlV~~~~~~~~~~~v~~l~~t~RG~~GFG 150 (157)
T PLN02547 71 ARIAPRSGLAWKHSIDVGAGVIDADYRGPVGVILFNHSDVDFEVKVGDRIAQLILEKIVTPEVVEVEDLDATVRGAGGFG 150 (157)
T ss_pred EEEEccccccccCcEecCCceECCCCCCceEEEEEeCCCCCEEEcCCCEEEEEEEEEeeeccEEEecccCcccccCCCcC
Confidence 99999999999888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCC
Q 029402 191 STGV 194 (194)
Q Consensus 191 STG~ 194 (194)
|||+
T Consensus 151 STG~ 154 (157)
T PLN02547 151 STGV 154 (157)
T ss_pred cCcc
Confidence 9995
No 2
>PHA03094 dUTPase; Provisional
Probab=100.00 E-value=5e-48 Score=308.58 Aligned_cols=141 Identities=52% Similarity=0.856 Sum_probs=137.0
Q ss_pred CceEEEEEccCCCCCCcccCCCceeeeEEcCcceEEcCCCEEEEEcCceeecCCCeEEEEEeCCCccccccccccceEEc
Q 029402 54 SSLLRVKKLSEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHIAPRSGLAWKHSMDVGAGVID 133 (194)
Q Consensus 54 ~~~l~vk~l~~~a~lP~r~t~~dAG~DL~a~~d~~I~Pg~~~lV~Tgi~v~iP~g~~g~I~pRSsla~K~gL~v~~GvID 133 (194)
.+.+++++++++|.+|+|++++|||||||++++++|+|++.++|+||++++||+||+|+|++|||+++|+||.+.+|+||
T Consensus 3 ~~~~~~~~l~~~a~~P~~~~~~~aG~Dl~a~~~~~i~P~~~~lv~Tg~~i~ip~g~~g~i~~RSsla~k~Gl~v~~GvID 82 (144)
T PHA03094 3 NSPVRCVKLSNFAKIPTRSSPKSAGYDLYSAYDYTVPPKERILVKTDISLSIPKFCYGRIAPRSGLSLNYGIDIGGGVID 82 (144)
T ss_pred CceEEEEEcCCCCCCCCcCCCCcccEEEecCCCeEECCCCEEEEEcCeEEEcCCCEEEEEEccccccccCCeeecCceEC
Confidence 34699999999999999999999999999999999999999999999999999999999999999998889988999999
Q ss_pred CCCCCceEEEEEeCCCCcEEeeCCCEEEEEEEeecccccEEEeccCCcccCCCCCCCCcCC
Q 029402 134 ADYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIVTPDVLEVQHLDSTVRGEGGFGSTGV 194 (194)
Q Consensus 134 sgYrGeI~v~L~N~s~~~~~I~~GdRIAQLV~~~~~~~~~~ev~~l~~t~RG~~GFGSTG~ 194 (194)
+||||||++.|+|+++.++.|++|+|||||||.++..+++++|++|++|+||+|||||||+
T Consensus 83 ~gYrGei~v~l~N~~~~~~~I~~G~RIaQlvf~~~~~~~~~~v~~l~~t~Rg~~GFGSTG~ 143 (144)
T PHA03094 83 EDYRGNIGVIFINNGKCTFNIKTGDRIAQIIFERIEYPELKEVQSLDSTDRGDQGFGSSGL 143 (144)
T ss_pred CCCCCceEEEEEECCCCCeEECCCCEEEEEEEEEcccCcEEEecccCcccccCCCcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999995
No 3
>PHA02703 ORF007 dUTPase; Provisional
Probab=100.00 E-value=8.8e-47 Score=307.72 Aligned_cols=140 Identities=62% Similarity=0.926 Sum_probs=136.1
Q ss_pred ceEEEEEccCCCCCCcccCCCceeeeEEcCcceEEcCCCEEEEEcCceeecCCCeEEEEEeCCCccccccccccceEEcC
Q 029402 55 SLLRVKKLSEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHIAPRSGLAWKHSMDVGAGVIDA 134 (194)
Q Consensus 55 ~~l~vk~l~~~a~lP~r~t~~dAG~DL~a~~d~~I~Pg~~~lV~Tgi~v~iP~g~~g~I~pRSsla~K~gL~v~~GvIDs 134 (194)
-.|+|+++++++.+|+|+|++||||||++++|++|+|++.++|+||++++||+||+++|++||||++|++|.+..|+||+
T Consensus 12 ~~i~v~~l~~~a~lP~~at~g~AGyDL~a~~d~vi~P~~~~lv~TGi~i~iP~g~~g~i~~RSsla~kg~i~v~~GvID~ 91 (165)
T PHA02703 12 DALRVVRLSPNATIPTRGSPGAAGLDLCSACDCIVPAGCRCVVFTDLLIKLPDGCYGRIAPRSGLAVKHFIDVGAGVIDA 91 (165)
T ss_pred cEEEEEEeCCCCCCCCCCCCCCcCccEecCCCeEECCCCEEEEeCCeEEEcCCCeEEEEECCccchhcCCEecccceECC
Confidence 46899999999999999999999999999999999999999999999999999999999999999998778889999999
Q ss_pred CCCCceEEEEEeCCCCcEEeeCCCEEEEEEEeecccccEEEeccCCcccCCCCCCCCcCC
Q 029402 135 DYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIVTPDVLEVQHLDSTVRGEGGFGSTGV 194 (194)
Q Consensus 135 gYrGeI~v~L~N~s~~~~~I~~GdRIAQLV~~~~~~~~~~ev~~l~~t~RG~~GFGSTG~ 194 (194)
||+|||++.|+|++++++.|++|+|||||||.++..+++++|++|++|+||+|||||||.
T Consensus 92 gYrGei~v~l~N~~~~~~~I~~G~RIaQLVf~~~~~~~~~~v~~l~~t~RG~~GFGSTG~ 151 (165)
T PHA02703 92 DYRGNVGVVLFNFGHNDFEVKKGDRIAQLICERAAFPAVEEVACLDDTDRGAGGFGSTGS 151 (165)
T ss_pred CCcCceEEEEEECCCCCEEeCCCCEEEEEEEEEcccceEEEecccccCcCCCCCCCcCCC
Confidence 999999999999999999999999999999999999999999999999999999999995
No 4
>COG0756 Dut dUTPase [Nucleotide transport and metabolism]
Probab=100.00 E-value=7.7e-47 Score=301.56 Aligned_cols=137 Identities=48% Similarity=0.803 Sum_probs=132.1
Q ss_pred EEEEccCCCCCCcccCCCceeeeEEcCcc-eEEcCCCEEEEEcCceeecCCCeEEEEEeCCCccccccccc--cceEEcC
Q 029402 58 RVKKLSEKAVLPKRGSPLAAGYDLSSSTE-TKVPARGKALVPTDLSIAIPEGTYAHIAPRSGLAWKHSMDV--GAGVIDA 134 (194)
Q Consensus 58 ~vk~l~~~a~lP~r~t~~dAG~DL~a~~d-~~I~Pg~~~lV~Tgi~v~iP~g~~g~I~pRSsla~K~gL~v--~~GvIDs 134 (194)
..+++.+.+.||+|+|+++|||||+++++ ++|.|+++.+||||++++||+|+++++.|||||++|+||.+ ++|+||+
T Consensus 8 ~~~~~~~~~~lP~y~t~gsAG~DLrA~~~~~~i~pg~~~LVpTGl~~~ip~g~~~~v~PRSgla~k~Gi~~~Ns~G~IDs 87 (148)
T COG0756 8 LDKRLNEGAPLPKYATEGSAGYDLRAAEDEVTIAPGERKLVPTGLAIELPEGYEAQVRPRSGLALKHGITLGNSPGTIDS 87 (148)
T ss_pred EEeecCCCCcCCeeecCCccceeeecccceeEECCCCeEEecCCEEEEcCCCcEEEEeccccCceeceEEEecCCceECC
Confidence 36778889999999999999999999999 89999999999999999999999999999999999999875 5999999
Q ss_pred CCCCceEEEEEeCCCCcEEeeCCCEEEEEEEeecccccEEEeccCCcccCCCCCCCCcCC
Q 029402 135 DYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIVTPDVLEVQHLDSTVRGEGGFGSTGV 194 (194)
Q Consensus 135 gYrGeI~v~L~N~s~~~~~I~~GdRIAQLV~~~~~~~~~~ev~~l~~t~RG~~GFGSTG~ 194 (194)
||||||++.|+|+++++|+|++||||||+||.|+..+++.+++++++|+||.|||||||+
T Consensus 88 DYrGei~V~l~N~~~~~f~ie~GdRIaQ~V~~~v~~~~~~~v~~~~~t~rg~GGFGSTG~ 147 (148)
T COG0756 88 DYRGEIKVLLINLGDEDFVIEKGDRIAQLVFVKVLQAEFDEVENLDETERGTGGFGSTGV 147 (148)
T ss_pred CCCceEEEEEEeCCCCCEEecCCCEEEEEEEEEEEecceeeeecccccccccCCCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999995
No 5
>TIGR00576 dut deoxyuridine 5'-triphosphate nucleotidohydrolase (dut). Changed role from 132 to 123. RTD
Probab=100.00 E-value=1.2e-45 Score=293.59 Aligned_cols=138 Identities=57% Similarity=0.928 Sum_probs=132.9
Q ss_pred EEEEEccCCCCCCcccCCCceeeeEEcCcceEEcCCCEEEEEcCceeecCCCeEEEEEeCCCccccccc--cccceEEcC
Q 029402 57 LRVKKLSEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHIAPRSGLAWKHSM--DVGAGVIDA 134 (194)
Q Consensus 57 l~vk~l~~~a~lP~r~t~~dAG~DL~a~~d~~I~Pg~~~lV~Tgi~v~iP~g~~g~I~pRSsla~K~gL--~v~~GvIDs 134 (194)
|++++++++|.+|+|++++||||||++++|++|+|+++++|+|++++.+|+||+++|++|||+++|+|| .+.+|+||+
T Consensus 1 ~~~~~~~~~a~~P~~~~~~~aGyDl~~~~d~~i~P~~~~lv~tg~~v~ip~g~~~~i~~RSsl~~k~gi~v~~~~GvID~ 80 (141)
T TIGR00576 1 LKFVKLSENAPLPTYATEGAAGYDLYAAEDVTIPPGERALVPTGIAIELPDGYYGRVAPRSGLALKHGVTIDNSPGVIDS 80 (141)
T ss_pred CeEEEcCCCCCCCCCCCCCccCeeEecCCCeEECCCCEEEEEeCcEEecCCCEEEEEEecccCcccCCEEEeecCceECC
Confidence 579999999999999999999999999999999999999999999999999999999999999988884 567999999
Q ss_pred CCCCceEEEEEeCCCCcEEeeCCCEEEEEEEeeccc-ccEEEeccCCcccCCCCCCCCcCC
Q 029402 135 DYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIVT-PDVLEVQHLDSTVRGEGGFGSTGV 194 (194)
Q Consensus 135 gYrGeI~v~L~N~s~~~~~I~~GdRIAQLV~~~~~~-~~~~ev~~l~~t~RG~~GFGSTG~ 194 (194)
||+|||++.|+|+++.++.|++|+|||||||.++.. +++++++++++|+||+|||||||+
T Consensus 81 gy~Gei~v~l~N~~~~~~~i~~G~rIaQlV~~~~~~~~~~~~~~~~~~t~RG~~gfGSTg~ 141 (141)
T TIGR00576 81 DYRGEIKVILINLGKEDFTVKKGDRIAQLVVEKIVTVPEFEEVEELDETERGEGGFGSTGV 141 (141)
T ss_pred CCCCceeEEEEeCCCCCEEEcCCCEEEEEEEEeccccccEEEeCccCCccccCCCCCCCCC
Confidence 999999999999999999999999999999999988 789999999999999999999996
No 6
>PRK00601 dut deoxyuridine 5'-triphosphate nucleotidohydrolase; Provisional
Probab=100.00 E-value=4.6e-45 Score=293.15 Aligned_cols=139 Identities=42% Similarity=0.668 Sum_probs=133.9
Q ss_pred eEEEEEccCCCCCCcccCCCceeeeEEcCc--ceEEcCCCEEEEEcCceeecCCCeEEEEEeCCCccccccccc--cceE
Q 029402 56 LLRVKKLSEKAVLPKRGSPLAAGYDLSSST--ETKVPARGKALVPTDLSIAIPEGTYAHIAPRSGLAWKHSMDV--GAGV 131 (194)
Q Consensus 56 ~l~vk~l~~~a~lP~r~t~~dAG~DL~a~~--d~~I~Pg~~~lV~Tgi~v~iP~g~~g~I~pRSsla~K~gL~v--~~Gv 131 (194)
.++++++.++|.+|+|++++||||||++++ +++|+|+++++|+||+++++|+||+++|++|||+++|+||.+ .+|+
T Consensus 7 ~~~~~~~~~~~~~P~~~~~~daG~Dl~~~~~~~i~i~P~~~~lv~tg~~v~~p~~~~~~i~~RSsla~k~Gl~v~~~~Gv 86 (150)
T PRK00601 7 KILDPRLGKEFPLPAYATEGSAGLDLRACLDEPVTLAPGERALVPTGLAIHIPDGYEAQILPRSGLAHKHGIVLGNLPGT 86 (150)
T ss_pred EEEEEEcCCCCCCCccCCCCCcCEeEEecCCCCCEECCCCeEEEEcCEEEECCCCeEEEEEeCCcccccCCEEEecCcce
Confidence 389999999999999999999999999987 899999999999999999999999999999999998888765 6999
Q ss_pred EcCCCCCceEEEEEeCCCCcEEeeCCCEEEEEEEeecccccEEEeccCCcccCCCCCCCCcCC
Q 029402 132 IDADYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIVTPDVLEVQHLDSTVRGEGGFGSTGV 194 (194)
Q Consensus 132 IDsgYrGeI~v~L~N~s~~~~~I~~GdRIAQLV~~~~~~~~~~ev~~l~~t~RG~~GFGSTG~ 194 (194)
||+||+|||++.|+|+++.++.|++|+|||||+|.++..+++++|++|++|+||+|||||||.
T Consensus 87 ID~gy~Gei~i~l~N~~~~~v~I~~G~rIaQlv~~~~~~~~~~~~~~l~~t~RG~~gFGSTG~ 149 (150)
T PRK00601 87 IDSDYRGELKVSLWNRGQEPFTIEPGERIAQLVIVPVVQAEFEEVEEFDETERGAGGFGSTGR 149 (150)
T ss_pred eCCCCCCceEEEEEeCCCCCEEECCCCEEEEEEEecccccceEEecccCcccccCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999995
No 7
>PTZ00143 deoxyuridine 5'-triphosphate nucleotidohydrolase; Provisional
Probab=100.00 E-value=3.9e-44 Score=289.55 Aligned_cols=137 Identities=30% Similarity=0.415 Sum_probs=129.5
Q ss_pred EEEEEccCCCC----CCcccCCCceeeeEEcCcceEEcCCCEEEEEcCceeecCC---------CeEEEEEeCCCccccc
Q 029402 57 LRVKKLSEKAV----LPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPE---------GTYAHIAPRSGLAWKH 123 (194)
Q Consensus 57 l~vk~l~~~a~----lP~r~t~~dAG~DL~a~~d~~I~Pg~~~lV~Tgi~v~iP~---------g~~g~I~pRSsla~K~ 123 (194)
++|+++++.+. +|+|++++||||||+++++++|+|+++++|+||+++++|+ ||+++|++|||++ |+
T Consensus 3 ~~i~~~~~~~~~~~~~p~~~~~~dAG~DL~a~~~~~i~Pg~~~~V~tGi~i~~p~~~~~~~~~~g~~~~i~~RSsla-~~ 81 (155)
T PTZ00143 3 LKILPLNDEVRELYKNHKTFHEGDSGLDLFIVKDQTIKPGETAFIKLGIKAAAFQKDEDGSDGKNVSWLLFPRSSIS-KT 81 (155)
T ss_pred EEEEEcChhhhccccCCccCCCCccccCEecCCCeEECCCCEEEEECCeEEEcccccccccCCCCEEEEEEccCccc-cc
Confidence 78999987655 9999999999999999999999999999999999999986 9999999999999 55
Q ss_pred cccc--cceEEcCCCCCceEEEEEeCCCCcEEeeCCCEEEEEEEeecccccEEEeccCCcccCCCCCCCCcCC
Q 029402 124 SMDV--GAGVIDADYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIVTPDVLEVQHLDSTVRGEGGFGSTGV 194 (194)
Q Consensus 124 gL~v--~~GvIDsgYrGeI~v~L~N~s~~~~~I~~GdRIAQLV~~~~~~~~~~ev~~l~~t~RG~~GFGSTG~ 194 (194)
||.+ ..|+||+||||||++.+.|+++++++|++|+|||||||+++..+++++|++|++|+||+|||||||.
T Consensus 82 gl~l~n~~GvID~gYrGei~v~l~N~~~~~~~I~~G~RIaQlVi~~~~~~~~~~v~~l~~t~RG~gGFGSTG~ 154 (155)
T PTZ00143 82 PLRLANSIGLIDAGYRGELIAAVDNIKDEPYTIKKGDRLVQLVSFDGEPITFELVDELDETTRGEGGFGSTGR 154 (155)
T ss_pred CeEecccCCeECCCCCccEEEEEEECCCCCeEECCCCEEEEEEEEecceeeEEEeCcCCCccccCCccCCCCC
Confidence 8754 6999999999999999999999999999999999999999999999999999999999999999995
No 8
>PRK13956 dut deoxyuridine 5'-triphosphate nucleotidohydrolase; Provisional
Probab=100.00 E-value=2.2e-42 Score=277.21 Aligned_cols=134 Identities=31% Similarity=0.439 Sum_probs=122.4
Q ss_pred eEEEEEccCCCCCCcccCCCceeeeEEcCcceEEcCCCEEEEEcCceeecCCCeEEEEEeCCCccccccccc--cceEEc
Q 029402 56 LLRVKKLSEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHIAPRSGLAWKHSMDV--GAGVID 133 (194)
Q Consensus 56 ~l~vk~l~~~a~lP~r~t~~dAG~DL~a~~d~~I~Pg~~~lV~Tgi~v~iP~g~~g~I~pRSsla~K~gL~v--~~GvID 133 (194)
+-.|.++.+.++||+|++++||||||+++++++|+|++.++|+||+++++|+||+++|++|||+++|+||.+ .+|+||
T Consensus 6 ~~~~~~~~~~~~lP~r~t~~sAG~DL~a~~~~~i~p~~~~lv~TGi~i~lP~g~~~~I~~RSsla~k~Gl~l~n~~GvID 85 (147)
T PRK13956 6 FELVSSFTNENLLPKRETAHAAGYDLKVAERTVIAPGEIKLVPTGVKAYMQPGEVLYLYDRSSNPRKKGLVLINSVGVID 85 (147)
T ss_pred cEEEEeccCCCCCCCcCCCCCCCcccccCCCeEECCCCEEEEECCeEEECCCCeEEEEecCchhhhhCCEEEcCcCCeEc
Confidence 345678999999999999999999999999999999999999999999999999999999999999888854 699999
Q ss_pred CCCC------CceEEEEEeCCCCcEEeeCCCEEEEEEEeecccccEEEeccCCcccCCCCCCCCcCC
Q 029402 134 ADYR------GPVGVILFNHSDVDFEVKRGDRIAQLIIEKIVTPDVLEVQHLDSTVRGEGGFGSTGV 194 (194)
Q Consensus 134 sgYr------GeI~v~L~N~s~~~~~I~~GdRIAQLV~~~~~~~~~~ev~~l~~t~RG~~GFGSTG~ 194 (194)
+||| |+|++.|.|+++.+++|++|||||||||.++..+++. ..++||+|||||||+
T Consensus 86 sdYrGe~~~~G~i~v~l~N~~~~~~~I~~GdRIAQlv~~p~~~~~~~-----~~~~r~~gGFGSTG~ 147 (147)
T PRK13956 86 GDYYGNPANEGHIFAQMKNITDQEVVLEVGERIVQGVFMPFLIADGD-----QADGERTGGFGSTGK 147 (147)
T ss_pred CCCCCCCCCCcEEEEEEEeCCCCCEEECCCCEEEEEEEEEEEEcccc-----ccccccCCCCCCCCC
Confidence 9998 5699999999999999999999999999998765543 247799999999995
No 9
>KOG3370 consensus dUTPase [Nucleotide transport and metabolism]
Probab=100.00 E-value=7.9e-42 Score=268.12 Aligned_cols=139 Identities=68% Similarity=1.105 Sum_probs=136.6
Q ss_pred eEEEEEccCCCCCCcccCCCceeeeEEcCcceEEcCCCEEEEEcCceeecCCCeEEEEEeCCCccccccccccceEEcCC
Q 029402 56 LLRVKKLSEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHIAPRSGLAWKHSMDVGAGVIDAD 135 (194)
Q Consensus 56 ~l~vk~l~~~a~lP~r~t~~dAG~DL~a~~d~~I~Pg~~~lV~Tgi~v~iP~g~~g~I~pRSsla~K~gL~v~~GvIDsg 135 (194)
+|++.++++.|..|+|++.++||||||+.++.+++|....+|+|++.+++|.++||.+++||+||+|++|.+..|+||+|
T Consensus 2 ~l~~~~~s~~a~~p~Rgs~~aaGydl~sa~~~~vpa~gk~~V~td~q~~vP~g~ygRvaprsglA~k~~I~~gagvVd~d 81 (140)
T KOG3370|consen 2 MLRFAKLSESATIPTRGSAGAAGYDLYSAQDGTVPARGKAVVDTDLQIAVPSGYYGRVAPRSGLAWKHFIDVGAGVVDPD 81 (140)
T ss_pred ccchhhcchhhcccccCCccccccchhhhcccccCcccceeccccceeecCcceeeeecccccchhhccccccCceeccc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEeCCCCcEEeeCCCEEEEEEEeecccccEEEeccCCcccCCCCCCCCcCC
Q 029402 136 YRGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIVTPDVLEVQHLDSTVRGEGGFGSTGV 194 (194)
Q Consensus 136 YrGeI~v~L~N~s~~~~~I~~GdRIAQLV~~~~~~~~~~ev~~l~~t~RG~~GFGSTG~ 194 (194)
||||+.+.|+|+++.+|.+++|||||||++.++.++++..|+.|+.|+||.+||||||+
T Consensus 82 yrgeV~v~LfN~~~~~F~~k~Gdriaqli~~~i~~~~i~~v~sLe~t~Rg~~Gfgstg~ 140 (140)
T KOG3370|consen 82 YRGEVGVLLFNHSDRDFEYKKGDRIAQLIVEKIVTPEIVLVSSLEATERGAGGFGSTGV 140 (140)
T ss_pred ccceeEEEEecCCCcceeeecCCcceeeEEEecCCCceehhhhHHHHhhhccCcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999996
No 10
>PF00692 dUTPase: dUTPase; InterPro: IPR008180 Synonym(s): dUTP diphosphatase, Deoxyuridine-triphosphatase The essential enzyme dUTP pyrophosphatase (3.6.1.23 from EC) is specific for dUTP and is critical for the fidelity of DNA replication and repair. dUTPase hydrolyzes dUTP to dUMP and pyrophosphate, simultaneously reducing dUTP levels and providing the dUMP for dTTP biosynthesis. dUTPase decreases the intracellular concentration of dUPT so that uracil cannot be incorporated into DNA []. The crystal structure of human dUTPase reveals that each subunit of the dUTPase trimer folds into an eight-stranded jelly-roll beta barrel, with the C-terminal beta strands interchanged among the subunits. The structure is similar to that of the Escherichia coli enzyme, despite low sequence homology between the two enzymes []. Other enzymes like deoxycytidine triphosphate deaminase (dCTP) (3.5.4.13 from EC) that specifically bind uridine also belong to this group suggesting that the signature may recognise a putative uridine-binding motif. Some retroviruses encode dUTPases. Retroviral dUTPase is synthesised as part of POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, dUTPase and RNase H. ; GO: 0016787 hydrolase activity, 0046080 dUTP metabolic process; PDB: 4DHK_A 1DUC_A 1DUN_A 3LQW_A 2BT1_A 2WE1_A 2WE0_A 2WE2_A 2BSY_A 2WE3_A ....
Probab=100.00 E-value=9.7e-39 Score=248.33 Aligned_cols=128 Identities=49% Similarity=0.801 Sum_probs=119.6
Q ss_pred CCCCCcccCCCceeeeEEcCcceEEcCCCEEEEEcCceeecCCCeEEEEEeCCCccccccccccceEEcCCCCCceEEEE
Q 029402 65 KAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHIAPRSGLAWKHSMDVGAGVIDADYRGPVGVIL 144 (194)
Q Consensus 65 ~a~lP~r~t~~dAG~DL~a~~d~~I~Pg~~~lV~Tgi~v~iP~g~~g~I~pRSsla~K~gL~v~~GvIDsgYrGeI~v~L 144 (194)
.+.+|.+++++||||||+++++++|+|+++++|+|++.+.+|++++++|++||||+++ |+.+.+|+||+||+|+|++.|
T Consensus 2 ~~~~~~~~~~~~ag~Dl~~~~~~~i~p~~~~~v~t~~~~~~p~~~~~~i~~RSsl~~~-gl~v~~gvid~~y~G~i~i~i 80 (129)
T PF00692_consen 2 EAEIPKRARPGDAGYDLYAPEDFVIPPGETVLVPTGEEINIPPGYYALILPRSSLARK-GLIVHPGVIDPGYRGEIKIII 80 (129)
T ss_dssp TCCSBBESSTTSSSEEEE-SSSEEEETTEEEEEEEEEEEE-STTEEEEEEE-HHHHHH-TEEEETEEEETTBESEEEEEE
T ss_pred CccccCCCCCCceeEEEEcCCCEEECCCCEEEEEeCeEEECCCCcEEEEecCchHHhc-CccccCcccCCCcccceEEEE
Confidence 5789999999999999999999999999999999999999999999999999999866 888888999999999999999
Q ss_pred EeCCCCcEEeeCCCEEEEEEEeecccccEEEeccCCcccCCCCCCCCcC
Q 029402 145 FNHSDVDFEVKRGDRIAQLIIEKIVTPDVLEVQHLDSTVRGEGGFGSTG 193 (194)
Q Consensus 145 ~N~s~~~~~I~~GdRIAQLV~~~~~~~~~~ev~~l~~t~RG~~GFGSTG 193 (194)
+|+++.++.|++|+|||||+|.++....++.++++..+.||++||||||
T Consensus 81 ~N~s~~~~~i~~G~riaQlv~~~~~~~~~~~~~~~~~~~rg~~Gfgstg 129 (129)
T PF00692_consen 81 YNHSDEPIRIEKGDRIAQLVFIPLSTPPVEPVEEFSNTERGEGGFGSTG 129 (129)
T ss_dssp EESSSSSEEEETTSEEEEEEEEEBESEEEEEESSTTTSSSTTTSTTTT-
T ss_pred EeccceeccccCCCEEEEEEEEecCccceEEccccCCccCCCCCCCCCC
Confidence 9999999999999999999999999988899999999999999999998
No 11
>PHA03124 dUTPase; Provisional
Probab=100.00 E-value=1.1e-35 Score=265.75 Aligned_cols=134 Identities=28% Similarity=0.348 Sum_probs=119.1
Q ss_pred EEEEEccCCCCCCcc-----cCCCceeeeEEcCcceEEcCCCEEEEEcCceeecCCCeEEEEEeCCCccccccccc-cce
Q 029402 57 LRVKKLSEKAVLPKR-----GSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHIAPRSGLAWKHSMDV-GAG 130 (194)
Q Consensus 57 l~vk~l~~~a~lP~r-----~t~~dAG~DL~a~~d~~I~Pg~~~lV~Tgi~v~iP~g~~g~I~pRSsla~K~gL~v-~~G 130 (194)
+......+.+.+|-+ .+++||||||+++++++|+|+++++|+||+++++|+||+++|++||||+.| |+.+ ..|
T Consensus 266 ~~~t~~~~aa~~Pf~~~F~PKtaGDAGyDLyA~EDvvI~PGEt~lIpTGIaIeIP~G~~glI~pRSGLAlK-GILV~~~G 344 (418)
T PHA03124 266 LRDDDDCPAALFPFHDIFAPKEAEDAGYDIRAPEDCTILPGGSTRIILPQKLACGKFRAAFILGRSSMNLK-GLLVDPEH 344 (418)
T ss_pred EeccCCCcccccchhhcCCCCCCccccccCccCCCeEECCCCeEEEECCEEEecCCCeEEEEEeccccccC-CeEeCCCc
Confidence 333344455555543 667899999999999999999999999999999999999999999999999 6654 579
Q ss_pred EEcCCCCCceEEEEEeCCCCcEEeeCCCEEEEEEEee--------cccccEEEeccCCc-----ccCCCCCCCCcCC
Q 029402 131 VIDADYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEK--------IVTPDVLEVQHLDS-----TVRGEGGFGSTGV 194 (194)
Q Consensus 131 vIDsgYrGeI~v~L~N~s~~~~~I~~GdRIAQLV~~~--------~~~~~~~ev~~l~~-----t~RG~~GFGSTG~ 194 (194)
+||+|| +++.|+|+++++++|++|||||||||.+ +..+.|++|++|++ |+||+|||||||+
T Consensus 345 VIDSDY---I~ViL~Nlsdep~tI~kGDRIAQLVIlP~r~e~l~~v~~~e~~eVeEL~e~~~~~TeRGeGGFGSTG~ 418 (418)
T PHA03124 345 VQDDDW---ISFNITNIRDAAAFFHAGDRIAQLIALEDKLEFLGEPDALPWKIVNSVQDEKKNLSSRGDGGFGSSGK 418 (418)
T ss_pred eECCCc---EEEEEEECCCCCEEECCCCEEEEEEEeecccccccceeecceEEeeeccccCCCcccccCCCCCCCCC
Confidence 999999 8999999999999999999999999998 66788999999987 9999999999995
No 12
>PHA03126 dUTPase; Provisional
Probab=99.97 E-value=2e-31 Score=234.89 Aligned_cols=125 Identities=26% Similarity=0.365 Sum_probs=110.6
Q ss_pred CCCCCcccCCCceeeeEEcCcceEEcCCCEEEEEcCceeecC-CCeEEEEEeCCCccccccccccceEEcCCCCCceEEE
Q 029402 65 KAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIP-EGTYAHIAPRSGLAWKHSMDVGAGVIDADYRGPVGVI 143 (194)
Q Consensus 65 ~a~lP~r~t~~dAG~DL~a~~d~~I~Pg~~~lV~Tgi~v~iP-~g~~g~I~pRSsla~K~gL~v~~GvIDsgYrGeI~v~ 143 (194)
....|+|. +||||||+++++++|+|+++++|+||+++.+| +||+++|++||||+.| ||.+.+|+||+| ++|++.
T Consensus 168 ~~f~PKR~--gDAGyDL~A~edvvI~Pge~~lV~TGIai~ip~~g~~~~I~pRSGLA~K-GL~V~~g~id~G--eeI~V~ 242 (326)
T PHA03126 168 DYFAPKRV--EDAGYDISAPTDATIEPDESHFVDLPIVFASSNPAVTPCIFGRSSMNRR-GLIVLPTRWVAG--RTCCFF 242 (326)
T ss_pred hccCCCCC--CccccCCcCCCCcEECCCCEEEEEcCeEEEcCCCCeEEEEeCccccccC-CeEecCcceecC--CeEEEE
Confidence 35678887 69999999999999999999999999999998 5999999999999988 898889999877 379999
Q ss_pred EEeCCCCcEEeeCCCEEEEEEEeecc-----------------------------cccEEEeccCC----cccCCCCCCC
Q 029402 144 LFNHSDVDFEVKRGDRIAQLIIEKIV-----------------------------TPDVLEVQHLD----STVRGEGGFG 190 (194)
Q Consensus 144 L~N~s~~~~~I~~GdRIAQLV~~~~~-----------------------------~~~~~ev~~l~----~t~RG~~GFG 190 (194)
|+|+++++++|++|||||||||++.. .+.|..+.+|+ .++||++|||
T Consensus 243 L~N~g~e~~~I~kGDRIAQLVIm~~~~~~~~p~~~~~~~~f~~~~~~~~~~~~~~p~~w~ft~~fd~eap~S~Rg~~GFG 322 (326)
T PHA03126 243 ILNVNKYPVSITKGQRVAQLLLTEDIDDALIPTTVNYDTPFPTYSPTGATKAPQSPVLWKFTTDFDREAPSSLRADGGFG 322 (326)
T ss_pred EEeCCCCCEEECCCCEEEEEEEcccchhhcCCCccCCCCcccccCCCccccCCCCCcceEEEeeccccCCcccccCCCCC
Confidence 99999999999999999999997541 12577777774 6999999999
Q ss_pred CcCC
Q 029402 191 STGV 194 (194)
Q Consensus 191 STG~ 194 (194)
|||.
T Consensus 323 STG~ 326 (326)
T PHA03126 323 STGL 326 (326)
T ss_pred CCCC
Confidence 9995
No 13
>PHA03123 dUTPase; Provisional
Probab=99.97 E-value=5.4e-31 Score=236.37 Aligned_cols=127 Identities=26% Similarity=0.312 Sum_probs=111.5
Q ss_pred cCCCCCCcccCCCceeeeEEcCcceEEcCCCEEEEEcCc--eeecCC-CeEEEEEeCCCccccccccccceEEcCCCCCc
Q 029402 63 SEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDL--SIAIPE-GTYAHIAPRSGLAWKHSMDVGAGVIDADYRGP 139 (194)
Q Consensus 63 ~~~a~lP~r~t~~dAG~DL~a~~d~~I~Pg~~~lV~Tgi--~v~iP~-g~~g~I~pRSsla~K~gL~v~~GvIDsgYrGe 139 (194)
....++|+|.. ||||||+++++++|+||++++|+||+ .+.+++ ||+++|++||||++| ||.+.+|+||+||+|
T Consensus 233 ~~~~F~pKR~g--DAGyDL~ApeDvtI~PGEt~lV~TGI~~~i~i~~pGy~a~I~pRSGLAkK-GLiV~~GvIDsGy~G- 308 (402)
T PHA03123 233 KHTIFKPKRQE--DAGYDICAPFEITLKANEFIKITLPFIQDLDLNHPNIDAYIFGRSSKNRI-GIIVCPTAWIAGEHC- 308 (402)
T ss_pred cccccccCCCC--CccccccCCCCcEECCCCEEEEeCCccceeccCCCCEEEEEEcccccccC-CeEeCCceEcCCCcc-
Confidence 44688999876 99999999999999999999999998 466654 999999999999955 999999999999998
Q ss_pred eEEEEEeCCCCcEEeeCCCEEEEEEEeeccc-----------------------------------ccEEEeccCC----
Q 029402 140 VGVILFNHSDVDFEVKRGDRIAQLIIEKIVT-----------------------------------PDVLEVQHLD---- 180 (194)
Q Consensus 140 I~v~L~N~s~~~~~I~~GdRIAQLV~~~~~~-----------------------------------~~~~ev~~l~---- 180 (194)
.+.|+|++++++.|++|+|||||||++... |.|....+|+
T Consensus 309 -~V~L~N~~~epi~IkkGDRIAQLVfm~~~~~~~~~~~~~~~~~~~fP~~~~~~~~~~~~~~p~~~P~w~fT~~fD~~Ap 387 (402)
T PHA03123 309 -EFYIFNATGDDIIIKPGDKIAQVLLIDHNNQSIHIHHDIINNFEAFPSAIFGKCGIEGLNSPDVYPKWHFTKMFDLIAP 387 (402)
T ss_pred -EEEEEECCCCCeEeCCCCEEEEEEEEEcccccCCCCCCcccccCCCCCCCCCcccCCcccCCCCCcceEEeecccccCC
Confidence 689999999999999999999999986532 2377777775
Q ss_pred cccCCCCCCCCcCC
Q 029402 181 STVRGEGGFGSTGV 194 (194)
Q Consensus 181 ~t~RG~~GFGSTG~ 194 (194)
.++||.|||||||+
T Consensus 388 pS~Rg~~GFGSTg~ 401 (402)
T PHA03123 388 PSDRGNKGFGSTDK 401 (402)
T ss_pred cccccCCCCCCCCC
Confidence 79999999999996
No 14
>PHA03130 dUTPase; Provisional
Probab=99.97 E-value=8.8e-31 Score=232.29 Aligned_cols=125 Identities=29% Similarity=0.449 Sum_probs=110.6
Q ss_pred CCCCCCcccCCCceeeeEEcCcceEEcCCCEEEEEcCceeecCC-CeEE-EEEeCCCccccccccccceEEcCCCCCce-
Q 029402 64 EKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPE-GTYA-HIAPRSGLAWKHSMDVGAGVIDADYRGPV- 140 (194)
Q Consensus 64 ~~a~lP~r~t~~dAG~DL~a~~d~~I~Pg~~~lV~Tgi~v~iP~-g~~g-~I~pRSsla~K~gL~v~~GvIDsgYrGeI- 140 (194)
+.+.+|+|+ +||||||+++++++|+|+++++|+||+++.||+ ++++ +|++||||+.| ||.+.+|+||+ ||+
T Consensus 203 ~~a~lPkRA--gDAGyDL~A~edVvI~PGet~lV~TGLaIeIP~~G~~g~~I~PRSGLA~K-GI~V~pG~id~---GEI~ 276 (368)
T PHA03130 203 APAFLPKRA--EDAGIDIVVHKRVEVPAGGTVVIQPSLRVLLAAGGPEAYYVLGRSSLNAR-GVLVTPTRWLP---GRQC 276 (368)
T ss_pred CCCCCCccC--CccCccccCCCCeEECCCCEEEEcCCeEEEcCCCCceEEEEeCccchhhC-CeeecccEEcc---CCEE
Confidence 458999999 599999999999999999999999999999985 8888 99999999998 88888888865 898
Q ss_pred EEEEEeCCCCcEEeeCCCEEEEEEEeecc----------------------------------cccEEEeccCC----cc
Q 029402 141 GVILFNHSDVDFEVKRGDRIAQLIIEKIV----------------------------------TPDVLEVQHLD----ST 182 (194)
Q Consensus 141 ~v~L~N~s~~~~~I~~GdRIAQLV~~~~~----------------------------------~~~~~ev~~l~----~t 182 (194)
++.|+|+++++++|++|||||||||..-. .+.|++..+|+ .+
T Consensus 277 ~ViL~N~g~ep~tIekGDRIAQLVI~~~~~l~wiP~~~~~~~~~f~~y~~~~~~~~~~~~~~~~p~w~ft~~fd~eAp~S 356 (368)
T PHA03130 277 AFSVHNITGAPVTLEAGSKVAQLLVAGSDALPWVPPDNVPGDGALRAYPRGVSPARATPAPPALPCLVFTAEFDAEAPPS 356 (368)
T ss_pred EEEEEECCCCCEEECCCCEEEEEEEeecccCceeCCCCCCCCCccccCcCCCCCCCCCCCCCCCceeeeeccccccCCcc
Confidence 59999999999999999999999996321 13577777885 69
Q ss_pred cCCCCCCCCcCC
Q 029402 183 VRGEGGFGSTGV 194 (194)
Q Consensus 183 ~RG~~GFGSTG~ 194 (194)
+||.|||||||+
T Consensus 357 ~R~~~GFGSTGi 368 (368)
T PHA03130 357 ERGTGGFGSTGI 368 (368)
T ss_pred cccCCCCCCCCC
Confidence 999999999995
No 15
>PHA03127 dUTPase; Provisional
Probab=99.97 E-value=3e-30 Score=228.33 Aligned_cols=117 Identities=23% Similarity=0.297 Sum_probs=103.9
Q ss_pred CceeeeEEcCcceEEcCCCEEEEEcCceeec-CCCeEEEEEeCCCccccccccccceEEcCCCCCceEEEEEeCCCCcEE
Q 029402 75 LAAGYDLSSSTETKVPARGKALVPTDLSIAI-PEGTYAHIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFE 153 (194)
Q Consensus 75 ~dAG~DL~a~~d~~I~Pg~~~lV~Tgi~v~i-P~g~~g~I~pRSsla~K~gL~v~~GvIDsgYrGeI~v~L~N~s~~~~~ 153 (194)
+||||||+++++++|+|+++.+|++++.+.. +.+++++|++||||+.| ||.+.+|+||+|| +++|.|+|+++++++
T Consensus 173 gdAGyDL~A~edvvI~Pge~~~V~lpv~~~~~~~~~~~~I~pRSGLA~K-GIiV~~gvID~G~--ei~V~L~N~~~e~~~ 249 (322)
T PHA03127 173 EDAGYDIAMPYTAVLAPGENLHVRLPVAYAAGAHAAAPYVFGRSSLNLR-GIVVLPTAWPPGE--PCRFVIRNVTQEPVV 249 (322)
T ss_pred CCccccCcCCCCeEECCCCEEEEECCCcccCCCccceEEEEccCCcccC-CEEecCccCcCCC--eEEEEEEeCCCCCEE
Confidence 7999999999999999999999999986542 34457899999999999 9998899999887 889999999999999
Q ss_pred eeCCCEEEEEEEee---------------c-------------ccccEEEeccCC----cccCCCCCCCCcCC
Q 029402 154 VKRGDRIAQLIIEK---------------I-------------VTPDVLEVQHLD----STVRGEGGFGSTGV 194 (194)
Q Consensus 154 I~~GdRIAQLV~~~---------------~-------------~~~~~~ev~~l~----~t~RG~~GFGSTG~ 194 (194)
|++|||||||||.+ . ..+.|+++.+|+ +++||+|||||||+
T Consensus 250 I~kGDRIAQLVf~~~~~~~ip~~~~~~~~f~~~~~~~~~~~~~~~~~w~~t~~~~~~ap~S~Rg~~GFGSTg~ 322 (322)
T PHA03127 250 AAAGQRVAQLLLLEEPLEWLPTELNDREPFPTTPRAAPPAPMAHRLRWRFVADFAAVAPSSARGDRGFGSTGL 322 (322)
T ss_pred ECCCCEEEEEEEccccccccCCcCCCCCccccccccCCCCCCCCCCcEEEEehhcccCCcccccCCCCCCCCC
Confidence 99999999999982 1 125789999887 79999999999995
No 16
>PHA03129 dUTPase; Provisional
Probab=99.96 E-value=4e-29 Score=226.95 Aligned_cols=124 Identities=27% Similarity=0.368 Sum_probs=109.3
Q ss_pred CCCCcccCCCceeeeEEcCcceEEcCCCEEEEEcCceee-cCCCeEEEEEeCCCccccccccccceEEcCCCCCceEEEE
Q 029402 66 AVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIA-IPEGTYAHIAPRSGLAWKHSMDVGAGVIDADYRGPVGVIL 144 (194)
Q Consensus 66 a~lP~r~t~~dAG~DL~a~~d~~I~Pg~~~lV~Tgi~v~-iP~g~~g~I~pRSsla~K~gL~v~~GvIDsgYrGeI~v~L 144 (194)
..+|+| ++||||||+++++++|+|+++++|.+++.+. +|+|++|+|++||||++| ||.+.+|.||.| +++++.|
T Consensus 279 ~f~PKR--~gdAGyDL~A~edvvI~Pge~~~Iai~i~~~~iP~G~~g~I~pRSGLA~K-GIiVl~g~id~G--eeI~V~L 353 (436)
T PHA03129 279 TFNPKR--LEDAGYDIPAPRDIELEPLSSTTIKIQQRYNCKDSSVIPCIFGRSSMNLR-GLIVLPSRWLPN--SWLTLTI 353 (436)
T ss_pred hcCCCC--CCccccCccCCCCeEECCCCEEEEEEecccccCCCCeEEEEECccccccC-CeEeccccEeCC--CeEEEEE
Confidence 578888 5699999999999999999999998887665 699999999999999998 888888999876 4699999
Q ss_pred EeCCCCcEEeeCCCEEEEEEEeecc-----------------------------cccEEEeccCC----cccCCCCCCCC
Q 029402 145 FNHSDVDFEVKRGDRIAQLIIEKIV-----------------------------TPDVLEVQHLD----STVRGEGGFGS 191 (194)
Q Consensus 145 ~N~s~~~~~I~~GdRIAQLV~~~~~-----------------------------~~~~~ev~~l~----~t~RG~~GFGS 191 (194)
+|+++++++|++|||||||||.+.. .+.|..+.+|+ .++||+|||||
T Consensus 354 ~N~g~e~v~I~kGDRIAQLVIi~~~~~~~ip~~~~~~~~fP~~~~~~~p~~~~~~p~w~ft~~fd~eap~S~Rg~~GFGS 433 (436)
T PHA03129 354 CNLTEKTVFIKAGDRIAQLLLVDQDAATLIPPENNTTDCFPTVGKCSRPYVTYGEPVWRETLHFDTEAMTSERQEGGFGS 433 (436)
T ss_pred EeCCCCCeEeCCCCEEEEEEEeecccccccCCCCCCCCCCCCCCCCcCCcCCCCCcceEEEehhcccCCcccccCCCCCC
Confidence 9999999999999999999998552 04688887774 69999999999
Q ss_pred cCC
Q 029402 192 TGV 194 (194)
Q Consensus 192 TG~ 194 (194)
||+
T Consensus 434 TG~ 436 (436)
T PHA03129 434 TGI 436 (436)
T ss_pred CCC
Confidence 995
No 17
>PHA03131 dUTPase; Provisional
Probab=99.95 E-value=4.4e-28 Score=212.69 Aligned_cols=99 Identities=24% Similarity=0.253 Sum_probs=91.9
Q ss_pred CCCCCcccCCCceeeeEEcCcceEEcCCCEEEEEcCcee-ecCCCeEEEEEeCCCccccccccccceEEcCCCCCceEEE
Q 029402 65 KAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSI-AIPEGTYAHIAPRSGLAWKHSMDVGAGVIDADYRGPVGVI 143 (194)
Q Consensus 65 ~a~lP~r~t~~dAG~DL~a~~d~~I~Pg~~~lV~Tgi~v-~iP~g~~g~I~pRSsla~K~gL~v~~GvIDsgYrGeI~v~ 143 (194)
...+|+| ++||||||+++++++|+|+++++|+||+++ ++|+||+++|++||||++| ||.+.++.|| +||+++.
T Consensus 123 ~l~~P~~--~~dAG~DL~a~~~~~I~P~~~~~V~tg~~~~~~p~~~~~~I~~RSsla~k-Gl~v~~~~~~---~Gei~v~ 196 (286)
T PHA03131 123 LLNPPQY--PDDAGFDVSLPQDLVIFPTTTFTFTLSLCCPPISPHFVPVIFGRSGLASK-GLTVKPTKWR---RSGLQLK 196 (286)
T ss_pred ccCCCCc--cccCCccEEeCCCEEECCCCEEEEeCCeEEecCCCCEEEEEEcCchhhcC-CeEEcCCeEE---CCEEEEE
Confidence 4568988 459999999999999999999999999995 9999999999999999988 8988888888 8999999
Q ss_pred EEeCCCCcEEeeCCCEEEEEEEeecc
Q 029402 144 LFNHSDVDFEVKRGDRIAQLIIEKIV 169 (194)
Q Consensus 144 L~N~s~~~~~I~~GdRIAQLV~~~~~ 169 (194)
++|.+++++.|++|+|||||||.+..
T Consensus 197 l~N~~~~~v~I~~G~RIAQlVf~~~~ 222 (286)
T PHA03131 197 LYNYTDETIFLPAGSRICQVVFMHKD 222 (286)
T ss_pred EEECCCCCEEECCCCEEEEEEEEecc
Confidence 99999999999999999999998653
No 18
>cd07557 trimeric_dUTPase Trimeric dUTP diphosphatases. Trimeric dUTP diphosphatases, or dUTPases, are the most common family of dUTPase, found in bacteria, eukaryotes, and archaea. They catalyze the hydrolysis of the dUTP-Mg complex (dUTP-Mg) into dUMP and pyrophosphate. This reaction is crucial for the preservation of chromosomal integrity as it removes dUTP and therefore reduces the cellular dUTP/dTTP ratio, and prevents dUTP from being incorporated into DNA. It also provides dUMP as the precursor for dTTP synthesis via the thymidylate synthase pathway. dUTPases are homotrimeric, except some monomeric viral dUTPases, which have been shown to mimic a trimer. Active sites are located at the subunit interface.
Probab=99.95 E-value=1.1e-27 Score=175.58 Aligned_cols=88 Identities=42% Similarity=0.686 Sum_probs=85.1
Q ss_pred eeeeEEcCcc---eEEcCCCEEEEEcCceeecCCCeEEEEEeCCCccccccccccc-eEEcCCCCCceEEEEEeCCCCcE
Q 029402 77 AGYDLSSSTE---TKVPARGKALVPTDLSIAIPEGTYAHIAPRSGLAWKHSMDVGA-GVIDADYRGPVGVILFNHSDVDF 152 (194)
Q Consensus 77 AG~DL~a~~d---~~I~Pg~~~lV~Tgi~v~iP~g~~g~I~pRSsla~K~gL~v~~-GvIDsgYrGeI~v~L~N~s~~~~ 152 (194)
|||||+++++ ++|+|+++++|+|++++.+|+++++++++|||+++ .||.+.. |+||+||+|++++.|+|+++.++
T Consensus 1 ag~Dl~~~~~~~~~~i~P~~~~~v~t~~~i~~p~~~~~~i~~RSs~~~-~Gi~v~~~g~iD~gy~G~l~v~l~N~~~~~~ 79 (92)
T cd07557 1 AGYDLRLGEDFEGIVLPPGETVLVPTGEAIELPEGYVGLVFPRSSLAR-KGITVHNAGVIDPGYRGEITLELYNLGPEPV 79 (92)
T ss_pred CcEEEEcCCcCCCEEEcCCCEEEEEEeEEEEcCCCeEEEEEcCchhhc-CCEEecCCcccCCCCcceEEEEEEECCCCCE
Confidence 7999999999 99999999999999999999999999999999997 5998887 99999999999999999999999
Q ss_pred EeeCCCEEEEEEE
Q 029402 153 EVKRGDRIAQLII 165 (194)
Q Consensus 153 ~I~~GdRIAQLV~ 165 (194)
.|++|+|||||+|
T Consensus 80 ~i~~G~~iaQlvf 92 (92)
T cd07557 80 VIKKGDRIAQLVF 92 (92)
T ss_pred EECCCCEEEEEEC
Confidence 9999999999986
No 19
>PHA03131 dUTPase; Provisional
Probab=99.93 E-value=3.3e-25 Score=194.57 Aligned_cols=126 Identities=20% Similarity=0.246 Sum_probs=115.3
Q ss_pred CCceEEEEEccCCCCCCcccCCCceeeeEEcCcceEEcCCCEEEEEcCceeecCCCeEEEEEeCCCccccccccccceEE
Q 029402 53 TSSLLRVKKLSEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHIAPRSGLAWKHSMDVGAGVI 132 (194)
Q Consensus 53 ~~~~l~vk~l~~~a~lP~r~t~~dAG~DL~a~~d~~I~Pg~~~lV~Tgi~v~iP~g~~g~I~pRSsla~K~gL~v~~GvI 132 (194)
..+.++.++...++..|.+. ..+++||++.++++|+||++++|+||+++++|+||++++++++ .|+ |.+.+|+|
T Consensus 4 ~~~~v~y~~~~~~f~~~~~~--~~~~l~l~n~~~i~I~Pge~~lV~TGi~i~iP~g~~~~i~gla---~K~-i~~~~GvI 77 (286)
T PHA03131 4 QRPEVYYAFEPSKFLITSPA--EESRLTLVNKTPILVRPGEPTVVPLGLYIRRPPGFAFILWGST---SKN-VTCHTGLI 77 (286)
T ss_pred cCceeEEEEcCCCcEEeccc--ccCCeEEeCCCCEEECCCCEEEEeCCeEEEcCCCEEEEEeecc---cCc-EEccceeE
Confidence 35789999999999999874 4799999999999999999999999999999999999999664 466 88899999
Q ss_pred cCCCCCceEEEEEeCCCCcEEeeCCCEEEEEEEeecccccEEEeccCCcccC
Q 029402 133 DADYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIVTPDVLEVQHLDSTVR 184 (194)
Q Consensus 133 DsgYrGeI~v~L~N~s~~~~~I~~GdRIAQLV~~~~~~~~~~ev~~l~~t~R 184 (194)
|+||||||++.|+|+++++++|++|||+|||+++++.++.+.+++.+..-.|
T Consensus 78 DsdYrGEI~V~l~N~~~~~~~I~~Gd~~~qlv~~~~~~p~~~~v~~l~~P~~ 129 (286)
T PHA03131 78 DPGYRGELKLILLNKTKYNVTLRPGELKVSLLAFTYATPILTDDSLLNPPQY 129 (286)
T ss_pred CCCCCcceEEEEEeCCCCCEEECCCCEEEEEEEEEeecCceEeccccCCCCc
Confidence 9999999999999999999999999999999999999999999988875544
No 20
>PHA01707 dut 2'-deoxyuridine 5'-triphosphatase
Probab=99.90 E-value=1.7e-23 Score=169.46 Aligned_cols=85 Identities=26% Similarity=0.426 Sum_probs=79.7
Q ss_pred cceEEcCCCEEEEEcCceeecCCCeEEEEEeCCCccccccccccceEEcCCCCCceEEEEEeCCCCcEEeeCCCEEEEEE
Q 029402 85 TETKVPARGKALVPTDLSIAIPEGTYAHIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFEVKRGDRIAQLI 164 (194)
Q Consensus 85 ~d~~I~Pg~~~lV~Tgi~v~iP~g~~g~I~pRSsla~K~gL~v~~GvIDsgYrGeI~v~L~N~s~~~~~I~~GdRIAQLV 164 (194)
+.++|+||+.++++|++++.||++++|++.+|||++++ ||.+++|+|||||+|++++.|+| +..++.|++|+|||||+
T Consensus 53 ~~~~l~Pg~~~l~~T~E~i~lP~~~~~~i~~RSslaR~-Gl~v~~~~iD~Gy~G~i~lel~n-~~~pi~i~~G~rIaQlv 130 (158)
T PHA01707 53 DEFIIYPHEHVLLTTKEYIKLPNDIIAFCNLRSTFARK-GLLIPPTIVDAGFEGQLTIELVG-SSIPVKLKSGERFLHLI 130 (158)
T ss_pred CcEEECCCCEEEEEEeEEEECCCCEEEEEECcchhhhC-CEEecceeECCCCCCEEEEEEEe-CCCCEEECCCCEEEEEE
Confidence 45789999999999999999999999999999999966 99999999999999999999999 67999999999999999
Q ss_pred Eeecccc
Q 029402 165 IEKIVTP 171 (194)
Q Consensus 165 ~~~~~~~ 171 (194)
|+++..+
T Consensus 131 f~~~~~~ 137 (158)
T PHA01707 131 FARTLTP 137 (158)
T ss_pred EEEcccc
Confidence 9998754
No 21
>TIGR02274 dCTP_deam deoxycytidine triphosphate deaminase. Members of this family include the Escherichia coli monofunctional deoxycytidine triphosphate deaminase (dCTP deaminase) and a Methanocaldococcus jannaschii bifunctional dCTP deaminase (3.5.4.13)/dUTP diphosphatase (EC 3.6.1.23), which has the EC number 3.5.4.30 for the overall operation.
Probab=99.90 E-value=4.3e-23 Score=169.72 Aligned_cols=104 Identities=28% Similarity=0.408 Sum_probs=88.0
Q ss_pred CcceEEcCCCEEEEEcCceeecCCCeEEEEEeCCCccccccccc--cceEEcCCCCCceEEEEEeCCCCcEEeeCCCEEE
Q 029402 84 STETKVPARGKALVPTDLSIAIPEGTYAHIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFNHSDVDFEVKRGDRIA 161 (194)
Q Consensus 84 ~~d~~I~Pg~~~lV~Tgi~v~iP~g~~g~I~pRSsla~K~gL~v--~~GvIDsgYrGeI~v~L~N~s~~~~~I~~GdRIA 161 (194)
.++++|+||+.++++|++++.+|++++|++++|||+++ .||.+ .+|+|||||+|++++.++|+++.++.|++|+|||
T Consensus 68 ~~~~~l~Pg~~~lv~t~e~i~lP~~~~~~i~~RSslar-~Gl~v~~~~g~iD~Gy~G~i~l~l~N~~~~~i~i~~g~rIa 146 (179)
T TIGR02274 68 GEEFVIPPGEFALATTLEYVKLPDDVVGFLEGRSSLAR-LGLFIHVTAGRIDPGFEGNITLELFNAGKLPVKLRPGMRIA 146 (179)
T ss_pred CCcEEECCCCEEEEEeceEEEcCCCeEEEEEecccccc-CCEEecCCCCcCCcCCCCEEEEEEEeCCCCCEEECCCCEEE
Confidence 35689999999999999999999999999999999995 58865 4699999999999999999999999999999999
Q ss_pred EEEEeecccccEEEeccCCcccCCCCCCCCcC
Q 029402 162 QLIIEKIVTPDVLEVQHLDSTVRGEGGFGSTG 193 (194)
Q Consensus 162 QLV~~~~~~~~~~ev~~l~~t~RG~~GFGSTG 193 (194)
||+|+++..+.....+ .|+..=.|++|
T Consensus 147 Qlvf~~~~~~~~~~Y~-----~~~g~Yq~q~g 173 (179)
T TIGR02274 147 QLVFERLSSPAERPYN-----GRSGKYQGQRG 173 (179)
T ss_pred EEEEEECccccccccc-----ccCCcccCCCC
Confidence 9999999876433332 14433345555
No 22
>PRK00416 dcd deoxycytidine triphosphate deaminase; Reviewed
Probab=99.86 E-value=4.9e-21 Score=157.33 Aligned_cols=87 Identities=22% Similarity=0.288 Sum_probs=81.2
Q ss_pred CcceEEcCCCEEEEEcCceeecCCCeEEEEEeCCCccccccccccceEEcCCCCCceEEEEEeCCCCcEEeeCCCEEEEE
Q 029402 84 STETKVPARGKALVPTDLSIAIPEGTYAHIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFEVKRGDRIAQL 163 (194)
Q Consensus 84 ~~d~~I~Pg~~~lV~Tgi~v~iP~g~~g~I~pRSsla~K~gL~v~~GvIDsgYrGeI~v~L~N~s~~~~~I~~GdRIAQL 163 (194)
.+.++|+||+.++++|++++.+|++++|++++|||+++ .||.+.+++|||||+|++++.++|+++.++.|++|+|||||
T Consensus 68 ~~~~~l~pg~~~lv~t~e~i~lP~~~~~~i~~RSslar-~Gl~v~~~~iD~Gy~G~i~l~l~n~~~~~i~I~~g~rIaQl 146 (177)
T PRK00416 68 GEVFILPPGEFALARTLEYFKLPDDVVGILEGRSSLAR-LGLIVHVTAIDPGWEGHITLEFSNSGPLPVKLYPGEGIGQL 146 (177)
T ss_pred CCeEEECCCCEEEEEeeeEEECCCCeEEEEEeCchhhc-CCEEecCceECcCCcCEEEEEEEeCCCCCEEECCCCEEEEE
Confidence 34589999999999999999999999999999999994 59988889999999999999999999999999999999999
Q ss_pred EEeecccc
Q 029402 164 IIEKIVTP 171 (194)
Q Consensus 164 V~~~~~~~ 171 (194)
+|+++..+
T Consensus 147 vf~~~~~~ 154 (177)
T PRK00416 147 LFFELSEP 154 (177)
T ss_pred EEEECCCc
Confidence 99998654
No 23
>COG0717 Dcd Deoxycytidine deaminase [Nucleotide transport and metabolism]
Probab=99.80 E-value=6.4e-19 Score=146.06 Aligned_cols=106 Identities=25% Similarity=0.301 Sum_probs=91.0
Q ss_pred CCCCCCcccCCCceeeeEEcCcc--eEEcCCCEEEEEcCceeecCCCeEEEEEeCCCccccccccccceEEcCCCCCceE
Q 029402 64 EKAVLPKRGSPLAAGYDLSSSTE--TKVPARGKALVPTDLSIAIPEGTYAHIAPRSGLAWKHSMDVGAGVIDADYRGPVG 141 (194)
Q Consensus 64 ~~a~lP~r~t~~dAG~DL~a~~d--~~I~Pg~~~lV~Tgi~v~iP~g~~g~I~pRSsla~K~gL~v~~GvIDsgYrGeI~ 141 (194)
...+-|......+--.+....++ ++|+|++.+++.|.++++||++++|++.+|||++ |.|+.+++|+|||||+|.++
T Consensus 50 ~~~iD~~~~~~~~~~~~~~~~e~~~~il~P~~~~L~~t~E~i~iP~~v~~~~~gRSSla-R~G~~~~~~~~DpGf~G~it 128 (183)
T COG0717 50 AGVIDPDNPDEEDPLVEEEELEDGEFILPPGEFYLAVTLEYVEIPEDVAAFCTGRSSLA-RLGLIVHVGVIDPGFEGRIT 128 (183)
T ss_pred CcEEcCCccccccccceeeeccCCcEEECCCcEEEEEEEEEEEcCcceEEEEEccCchh-hCcEEecCccCCCCcCceEE
Confidence 34556654443333445555554 8999999999999999999999999999999998 55999999999999999999
Q ss_pred EEEEeCCCCcEEeeCCCEEEEEEEeeccc
Q 029402 142 VILFNHSDVDFEVKRGDRIAQLIIEKIVT 170 (194)
Q Consensus 142 v~L~N~s~~~~~I~~GdRIAQLV~~~~~~ 170 (194)
+.+.|.++.++.|++|+|||||||.++..
T Consensus 129 le~~n~~~~p~~L~~g~rI~QLvF~~l~~ 157 (183)
T COG0717 129 LELVNSGPLPIRLYPGERIAQLVFLELDS 157 (183)
T ss_pred EEEEecCCCCeEEcCCCEEEEEEEEEccc
Confidence 99999999999999999999999999884
No 24
>PHA03129 dUTPase; Provisional
Probab=99.79 E-value=1.7e-19 Score=164.31 Aligned_cols=77 Identities=25% Similarity=0.483 Sum_probs=72.7
Q ss_pred EEEEEcCceeecCCCeEEEEE------eCCCccccccccccceEEcCCCCCceEEEEEeCCCCcEEeeCCCEEEEEEEee
Q 029402 94 KALVPTDLSIAIPEGTYAHIA------PRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEK 167 (194)
Q Consensus 94 ~~lV~Tgi~v~iP~g~~g~I~------pRSsla~K~gL~v~~GvIDsgYrGeI~v~L~N~s~~~~~I~~GdRIAQLV~~~ 167 (194)
..+|+||+++++|+||+++|. |||+ +.| ||.+..|+||+||||||+++|+|+ ++++|++|+||||||+.+
T Consensus 77 ~~lV~TGlaiaiP~Gy~~~V~~~~~~~PRSG-a~k-gI~v~NGvIDSdYRGEIkviL~N~--~~~tI~~GdRIAQLVi~~ 152 (436)
T PHA03129 77 ICLLDLGVRVAVPQNYVVVLAKLTDPDPTSR-GIP-VIRVANGVIDSGYRGTIRAVLFYE--KSCTIPKNGLAIRLALVK 152 (436)
T ss_pred EEEECCceEEecCCCEEEEEEecCCCCCCcc-CcC-ceEeccccccCCCCcEEEEEEEcC--CCEEeCCCCEEEEEEEEE
Confidence 579999999999999999999 9999 989 998777999999999999999998 899999999999999999
Q ss_pred cccccEE
Q 029402 168 IVTPDVL 174 (194)
Q Consensus 168 ~~~~~~~ 174 (194)
+.+++++
T Consensus 153 v~~~~~~ 159 (436)
T PHA03129 153 LASPNIN 159 (436)
T ss_pred eeeccee
Confidence 9987764
No 25
>PRK02253 deoxyuridine 5'-triphosphate nucleotidohydrolase; Provisional
Probab=99.79 E-value=5.4e-19 Score=144.20 Aligned_cols=85 Identities=26% Similarity=0.344 Sum_probs=71.6
Q ss_pred cceEEcCCCEEEEEcCceeecCCCeEEEEEeCCCccccccccccceEEcCCCCCceEEEEEeCCCCcEEeeCCCEEEEEE
Q 029402 85 TETKVPARGKALVPTDLSIAIPEGTYAHIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFEVKRGDRIAQLI 164 (194)
Q Consensus 85 ~d~~I~Pg~~~lV~Tgi~v~iP~g~~g~I~pRSsla~K~gL~v~~GvIDsgYrGeI~v~L~N~s~~~~~I~~GdRIAQLV 164 (194)
+.++|+||+.. +.|++++.||++++|++.+|||++ |.||.+++++||+||+|.+.+.+.|.+..++.|++|+||||||
T Consensus 70 ~~~~l~pg~~l-~~t~E~v~ip~~~~~~~~~RSsl~-R~Gl~v~~~~iD~Gy~G~~~i~l~~~n~~~~~i~~G~rIaQlv 147 (167)
T PRK02253 70 GWIRLEPGIYK-VRYNEVVNIPEDHVGFAYPRSSLL-RNGCTLETAVWDAGYEGRGEGLLVVHNPHGIRLERGARIAQLV 147 (167)
T ss_pred CeEEECCCCEE-EEeeeEEECCCCcEEEEECCcHHh-hCCeEcCCccCCcCCCCCCEEEEEEeCCCCEEECCCCEEEEEE
Confidence 45789999865 568899999999999999999996 6699888999999999855444444445799999999999999
Q ss_pred Eeecccc
Q 029402 165 IEKIVTP 171 (194)
Q Consensus 165 ~~~~~~~ 171 (194)
|.++..+
T Consensus 148 f~~~~~~ 154 (167)
T PRK02253 148 FATLDHE 154 (167)
T ss_pred EEECccC
Confidence 9988764
No 26
>PRK07559 2'-deoxycytidine 5'-triphosphate deaminase; Provisional
Probab=99.62 E-value=1.7e-15 Score=137.11 Aligned_cols=84 Identities=20% Similarity=0.257 Sum_probs=75.7
Q ss_pred CcceEEcCCCEEEEEcCceeecCCCeEEEEEeCCCccccccccc--------cceEEcCCCCCceEEEEEeCCCCcEEee
Q 029402 84 STETKVPARGKALVPTDLSIAIPEGTYAHIAPRSGLAWKHSMDV--------GAGVIDADYRGPVGVILFNHSDVDFEVK 155 (194)
Q Consensus 84 ~~d~~I~Pg~~~lV~Tgi~v~iP~g~~g~I~pRSsla~K~gL~v--------~~GvIDsgYrGeI~v~L~N~s~~~~~I~ 155 (194)
.+.++|+||+.++++|.+++.+|++++|++.+|||++ |.||.+ ..++||+||+|.+.+.++| +..++.|+
T Consensus 79 ~eg~vL~Pg~~yL~~t~E~v~LP~dl~a~~~~RSSlg-RlGl~i~~~a~~~~~~~~iDpGy~G~itLEi~~-~~~pI~l~ 156 (365)
T PRK07559 79 TDGAVLETGCVYIVPLLESLALPADLSASANPKSSTG-RLDVFTRVITDGAQEFDKIPAGYHGPLYAEISP-RTFPILVR 156 (365)
T ss_pred CCceEEcCCeEEEEEEEEEEeCCcceEEEEeccchhh-hCCeEEEEecccccccCccCCCccceEEEEEec-CCccEEEe
Confidence 4668999999999999999999999999999999998 568854 3489999999999999998 77899999
Q ss_pred CCCEEEEEEEeecc
Q 029402 156 RGDRIAQLIIEKIV 169 (194)
Q Consensus 156 ~GdRIAQLV~~~~~ 169 (194)
+|+|||||+|.+-.
T Consensus 157 pG~RI~QlvF~~~~ 170 (365)
T PRK07559 157 TGSRLSQIRFRRGE 170 (365)
T ss_pred CCCEEEEEEEEcCc
Confidence 99999999998543
No 27
>PHA03127 dUTPase; Provisional
Probab=99.53 E-value=3.1e-14 Score=126.62 Aligned_cols=75 Identities=21% Similarity=0.306 Sum_probs=67.5
Q ss_pred EEEEEcCceeecCCCeEEEEEe-CCCccccccccccceEEcCCCCCceEEEEEeCCCCcEEeeCCCEEEEEEEeecc
Q 029402 94 KALVPTDLSIAIPEGTYAHIAP-RSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIV 169 (194)
Q Consensus 94 ~~lV~Tgi~v~iP~g~~g~I~p-RSsla~K~gL~v~~GvIDsgYrGeI~v~L~N~s~~~~~I~~GdRIAQLV~~~~~ 169 (194)
+.+|+||+++++|+||+++|.+ |||++.|+|+.+..|+||+||||||+++|+|++. ..+|.+|+-=.++.+.+..
T Consensus 63 ~~lV~tGl~i~~P~Gy~~~v~p~RSGla~k~gi~~~nG~IDsgYRGei~vil~N~~~-~~~~~pg~l~l~l~l~~~~ 138 (322)
T PHA03127 63 SRLVNLGLRAAAPGGYAILMSQMCSGQTPSRPPAVAVGIVDSGYRGILRAIVWAPPC-IETIPEAGLALRLTLARLA 138 (322)
T ss_pred EEEecCceEEecCCCEEEEEeeccCCccccCCcccccCCCCCCCCceEEEEEEeCCC-CeeecCCceEEEEEEeeee
Confidence 4689999999999999999999 9999999999998999999999999999999988 9999999666666665443
No 28
>PHA03128 dUTPase; Provisional
Probab=99.36 E-value=3.6e-12 Score=114.26 Aligned_cols=94 Identities=14% Similarity=0.144 Sum_probs=82.4
Q ss_pred CCCCCcccCCCceeeeEEcCcceEEcCCCEEEEEcCceeecCCCeEEEEEeCCCccccccccccceEEcCCCCCce-EEE
Q 029402 65 KAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHIAPRSGLAWKHSMDVGAGVIDADYRGPV-GVI 143 (194)
Q Consensus 65 ~a~lP~r~t~~dAG~DL~a~~d~~I~Pg~~~lV~Tgi~v~iP~g~~g~I~pRSsla~K~gL~v~~GvIDsgYrGeI-~v~ 143 (194)
+...|.+ .|||||+.++++.|+|+.++.+.....-...+.+.++|++||+|+.| ||.+.+.+|-+ |-+ .|.
T Consensus 202 nL~PP~y----~agFDL~l~~~l~I~P~~t~tv~fda~p~~~p~~~aLI~GrsgLA~k-GLlV~PtiW~~---~tlp~lk 273 (376)
T PHA03128 202 NIPPPNE----HYFFGLRTRQTIIIQPGHTQTVYFDAAYVHAPGICALIVGTRQFSQS-DLIIRPTIWLP---GTVATVT 273 (376)
T ss_pred cCCCCCc----ccceEEecCCcEEECCCCcEEEEEeccCCCCCcceeEEEcCchhhhC-CcEEeeeEeCC---CCcceEE
Confidence 3445554 29999999999999999999999885554578999999999999987 89999999876 457 899
Q ss_pred EEeCCCCcEEeeCCCEEEEEEEe
Q 029402 144 LFNHSDVDFEVKRGDRIAQLIIE 166 (194)
Q Consensus 144 L~N~s~~~~~I~~GdRIAQLV~~ 166 (194)
++|.+++.+.|.+|+||||+||.
T Consensus 274 i~N~T~~Tv~i~agsrIAQVVFt 296 (376)
T PHA03128 274 VVNTSSTTVCISPTTTVAKVVFT 296 (376)
T ss_pred EEeCCCceEEecCCCEEEEEEEe
Confidence 99999999999999999999996
No 29
>PRK07559 2'-deoxycytidine 5'-triphosphate deaminase; Provisional
Probab=99.31 E-value=7.9e-12 Score=113.36 Aligned_cols=83 Identities=17% Similarity=0.274 Sum_probs=73.8
Q ss_pred cceEEcCCCEEEEEcCceeecCCCeEEEEEeCCCccccccc-cc-cceEEcCCCC--------CceEEEEEeCCCCcEEe
Q 029402 85 TETKVPARGKALVPTDLSIAIPEGTYAHIAPRSGLAWKHSM-DV-GAGVIDADYR--------GPVGVILFNHSDVDFEV 154 (194)
Q Consensus 85 ~d~~I~Pg~~~lV~Tgi~v~iP~g~~g~I~pRSsla~K~gL-~v-~~GvIDsgYr--------GeI~v~L~N~s~~~~~I 154 (194)
+.++|.|++.+++.|.+++.+|++++|++.+||+- .|. .+ .+|+|||||. |.+.+.+.| ++.|+.|
T Consensus 246 ~~~iL~Pgef~L~~t~E~v~lP~d~~a~~~~~~s~---~G~~~vh~Ag~~DpGf~~~~~~~~~g~~tLEi~~-~~~P~~L 321 (365)
T PRK07559 246 GELILDPGEFYILASREAVHVPPDYAAEMVPFDPL---VGEFRVHYAGFFDPGFGHAEAGGTGSRAVLEVRS-HEVPFIL 321 (365)
T ss_pred CcEEECCCCEEEEEEEEEEeCChhHeEEEeccCcc---eeeeeccccceECCCCCcccccCCCceEEEEEEe-CCCcEEe
Confidence 46899999999999999999999999999977772 233 35 6899999999 999999998 6789999
Q ss_pred eCCCEEEEEEEeecccc
Q 029402 155 KRGDRIAQLIIEKIVTP 171 (194)
Q Consensus 155 ~~GdRIAQLV~~~~~~~ 171 (194)
++|+|||||+|+++..+
T Consensus 322 ~~G~ri~qlvf~~~~~~ 338 (365)
T PRK07559 322 EHGQIVGRLVYERMLER 338 (365)
T ss_pred cCCCEEEEEEEEEcCCC
Confidence 99999999999998754
No 30
>PHA03128 dUTPase; Provisional
Probab=99.28 E-value=6.7e-11 Score=106.23 Aligned_cols=127 Identities=9% Similarity=0.049 Sum_probs=109.8
Q ss_pred CceEEEEEccCCCCCCcccCCCceeeeEEcCcceEEcCCCEEEEEcCceeecCCCeEEEEEeCCCccccccccccceEEc
Q 029402 54 SSLLRVKKLSEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHIAPRSGLAWKHSMDVGAGVID 133 (194)
Q Consensus 54 ~~~l~vk~l~~~a~lP~r~t~~dAG~DL~a~~d~~I~Pg~~~lV~Tgi~v~iP~g~~g~I~pRSsla~K~gL~v~~GvID 133 (194)
.+.++.|....+++. ++ ....+-|+.-..+.+.|++...+++|+++.+|+||+|+++..++- + .+...+|+||
T Consensus 86 ~p~V~Ykf~~S~Fi~--~q--~~srL~LtNk~iI~V~p~~~~Iv~LGI~L~iPeG~fgi~L~~~s~--~-~v~ChtgLId 158 (376)
T PHA03128 86 RPKVPYKWIPSSFIV--KQ--CHTQLAFYNKHIIWLSRERKTPTSLGISLYIPEGFFGITFYKCLD--A-QFVCMPELIE 158 (376)
T ss_pred cceeEEEeeCceEEe--cc--CcceEEEEcceeEEEeCCCceEEcceeEEecCCCeEEEEEecCCC--C-CeEecccccC
Confidence 567888888888866 22 357888999999999999999999999999999999999988885 4 5778999999
Q ss_pred CCCCCceEEEEEeCCCCcEEeeCCCEEEEEEEeecccccEEEeccCCcccCCCCCC
Q 029402 134 ADYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIVTPDVLEVQHLDSTVRGEGGF 189 (194)
Q Consensus 134 sgYrGeI~v~L~N~s~~~~~I~~GdRIAQLV~~~~~~~~~~ev~~l~~t~RG~~GF 189 (194)
+||+| +++.+.|.+..++.|.+|+-=.-|.++++..|+.-++..|..-.. ..||
T Consensus 159 pGy~g-ikLiL~N~Ts~~v~L~PGeLevsI~aFpy~vPePwq~~nL~PP~y-~agF 212 (376)
T PHA03128 159 PGLQN-PQMDVVNLNYTFQAIFPGTIEGDIGVFPCFCPEPWQLMNIPPPNE-HYFF 212 (376)
T ss_pred CCCcc-eEEEEEeCCCccceecCCceEEEEEEEEccCCCccccccCCCCCc-ccce
Confidence 99999 999999999999999999999999999999998777777764333 2555
No 31
>PHA03125 dUTPase; Provisional
Probab=99.14 E-value=2.7e-10 Score=102.08 Aligned_cols=95 Identities=14% Similarity=0.161 Sum_probs=81.0
Q ss_pred CCCCCcccCCCceeeeEEcCcceEEcCCCEEEEEcCceeecCCCeEEEEEeCCCccccccccccceEEcCCCCCce-EEE
Q 029402 65 KAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHIAPRSGLAWKHSMDVGAGVIDADYRGPV-GVI 143 (194)
Q Consensus 65 ~a~lP~r~t~~dAG~DL~a~~d~~I~Pg~~~lV~Tgi~v~iP~g~~g~I~pRSsla~K~gL~v~~GvIDsgYrGeI-~v~ 143 (194)
+...|.+. .|||+.++++.|+|+.++.++.-.....|+...++|++||+|+.| ||.+.+.+|-+ |-+ .|.
T Consensus 247 nL~PP~y~-----~FDL~l~r~l~I~P~~~~~~~f~~a~~CPp~~~aLI~GrsgLA~k-GLlV~PtiW~~---~tlp~lk 317 (376)
T PHA03125 247 NLSPPEFA-----KFHLKTNREFIVKPNSYTIQNFDAMYVCADELKALMIPSKEILKL-GLLIETYIWNK---DTIPSIK 317 (376)
T ss_pred CCCCCCcc-----ceeEeeCccEEECCCccceeeeEEEeeCCCcceeEEEcCchhhhC-CcEEeeeEeCC---CCcceEE
Confidence 34455553 399999999999999777777666777899999999999999977 89999999876 457 899
Q ss_pred EEeCCCCcEEeeCCCEEEEEEEeec
Q 029402 144 LFNHSDVDFEVKRGDRIAQLIIEKI 168 (194)
Q Consensus 144 L~N~s~~~~~I~~GdRIAQLV~~~~ 168 (194)
++|.+++.+.|++|+||||+||..-
T Consensus 318 i~N~T~~Tv~i~AgsrIAQVVFth~ 342 (376)
T PHA03125 318 IFNSTRKTIYIPTGICIARIIFTCG 342 (376)
T ss_pred EEecCCceEEecCCCEEEEEEEEeC
Confidence 9999999999999999999999643
No 32
>PF06559 DCD: 2'-deoxycytidine 5'-triphosphate deaminase (DCD); InterPro: IPR010550 This family consists of several bacterial 2'-deoxycytidine 5'-triphosphate deaminase proteins (3.5.4.13 from EC).; GO: 0008829 dCTP deaminase activity; PDB: 2R9Q_C.
Probab=99.03 E-value=8.1e-10 Score=98.96 Aligned_cols=82 Identities=21% Similarity=0.270 Sum_probs=62.2
Q ss_pred cceEEcCCCEEEEEcCceeecCCCeEEEEEeCCCccccccccccc--------eEEcCCCCCceEEEEEeCCCCcEEeeC
Q 029402 85 TETKVPARGKALVPTDLSIAIPEGTYAHIAPRSGLAWKHSMDVGA--------GVIDADYRGPVGVILFNHSDVDFEVKR 156 (194)
Q Consensus 85 ~d~~I~Pg~~~lV~Tgi~v~iP~g~~g~I~pRSsla~K~gL~v~~--------GvIDsgYrGeI~v~L~N~s~~~~~I~~ 156 (194)
...+|+||+.++++|-+++.+|.+..++.-||||++ |.+|.+.. ..||+||.|.|.+.+.| ..-++.+++
T Consensus 79 ~GaVLE~GcVYlvpl~EsL~LP~di~A~anpKSStG-RLdlftRvitd~~~~Fd~I~~Gy~GpLylEIsp-rtfpI~vrp 156 (364)
T PF06559_consen 79 DGAVLEPGCVYLVPLMESLALPADISARANPKSSTG-RLDLFTRVITDGGAEFDRIPPGYSGPLYLEISP-RTFPILVRP 156 (364)
T ss_dssp S-EEE-TT-EEEEEEEEEEE--TTEEEEEEE-HHHH-HTTEEEEEEETT-SSTTEE-TT-EEEEEEEEEE-SSS-EEE-T
T ss_pred CCceecCCeEEEEEeEeeecCCcCcEEEEcCccccc-ccceEEEEeccCccccCccCCCCcccEEEEEcC-CeeeEEEcC
Confidence 446899999999999999999999999999999998 55765432 35999999999999999 488999999
Q ss_pred CCEEEEEEEeec
Q 029402 157 GDRIAQLIIEKI 168 (194)
Q Consensus 157 GdRIAQLV~~~~ 168 (194)
|+||.||.|..-
T Consensus 157 G~rL~QirFr~g 168 (364)
T PF06559_consen 157 GMRLSQIRFRRG 168 (364)
T ss_dssp T-EEEEEEEEES
T ss_pred CCceeeEEEecC
Confidence 999999999754
No 33
>PHA03125 dUTPase; Provisional
Probab=98.90 E-value=2.8e-08 Score=89.32 Aligned_cols=101 Identities=21% Similarity=0.270 Sum_probs=90.3
Q ss_pred ceeeeEEcCcceEEcCCCEEEEEcCceeecCCCeEEEEEeCCCccccccccccceEEcCCCCCceEEEEEeCCCCcEEee
Q 029402 76 AAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFEVK 155 (194)
Q Consensus 76 dAG~DL~a~~d~~I~Pg~~~lV~Tgi~v~iP~g~~g~I~pRSsla~K~gL~v~~GvIDsgYrGeI~v~L~N~s~~~~~I~ 155 (194)
.+++-|.....+.+.|++...+++|+++.+|+||+|+++++++ .. .-.+.+|+||+| |++++.+.|.+..++.|.
T Consensus 150 ~srL~LtNk~iI~V~p~r~~IvpLGI~L~iPeG~fgIL~gkss-~v--~cvchtgLIdpG--geikLiL~N~Ts~~v~L~ 224 (376)
T PHA03125 150 TNKITLVNRELIWVPHDQVRIVKLDISLNIPDGFFGVITGHSN-DV--FCECVTEIITDE--TDISVFLMNLSEHSLMLL 224 (376)
T ss_pred CceEEEEcceeEEEeCCCceEEeceEEEecCCCeEEEEECCCC-CC--ceeecceeECCC--CcEEEEEEeCCCCcceec
Confidence 4788888888899999999999999999999999999999998 31 334589999999 999999999999999999
Q ss_pred CCCEEEEEEEeecccccEEEeccCCc
Q 029402 156 RGDRIAQLIIEKIVTPDVLEVQHLDS 181 (194)
Q Consensus 156 ~GdRIAQLV~~~~~~~~~~ev~~l~~ 181 (194)
+|+-=.-|.++++..|+.-++..|..
T Consensus 225 PGeLeVsI~aFpy~vPEPwq~~nL~P 250 (376)
T PHA03125 225 PGDVEFSINFLPCYIPEPWEMINLSP 250 (376)
T ss_pred CCceEEEEEEEEccCCCcccccCCCC
Confidence 99999999999999998777776653
No 34
>PHA03126 dUTPase; Provisional
Probab=98.71 E-value=8.7e-08 Score=85.49 Aligned_cols=82 Identities=22% Similarity=0.340 Sum_probs=68.8
Q ss_pred EEEEEcCceeecCCCeEEEEEeCCCc--------cccccc---------cccceEEcCCCCCceEEEEEeCCCCcEEeeC
Q 029402 94 KALVPTDLSIAIPEGTYAHIAPRSGL--------AWKHSM---------DVGAGVIDADYRGPVGVILFNHSDVDFEVKR 156 (194)
Q Consensus 94 ~~lV~Tgi~v~iP~g~~g~I~pRSsl--------a~K~gL---------~v~~GvIDsgYrGeI~v~L~N~s~~~~~I~~ 156 (194)
..++++|+++.-|+||+.++..-+++ ..+ .| .++.|+||+||||+|+++ .|..+...+|.+
T Consensus 53 ~~~~~lGv~~~~~~gyA~~L~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~GlID~GYrG~lk~i-~~~~~~~~~i~~ 130 (326)
T PHA03126 53 SVLTDVGVRVACSSGYAIVLTQISGLLPVEPEPGNFS-NVTFPGNSAKYYTAYGIVDSGYRGVVKAV-QFAPGVNTSVPP 130 (326)
T ss_pred EEEecceeEEeCCCCeEEEEEeccCCCcccccccccc-ccccccccccceeeeceECCCcceEEEeE-eccCCCceeecC
Confidence 36899999999999999999988864 012 23 457999999999999999 687888899999
Q ss_pred CCEEEEEEEeecccccEEEec
Q 029402 157 GDRIAQLIIEKIVTPDVLEVQ 177 (194)
Q Consensus 157 GdRIAQLV~~~~~~~~~~ev~ 177 (194)
|+--.+|+.+++.++.+....
T Consensus 131 g~L~v~L~~~~~~t~~~~~~~ 151 (326)
T PHA03126 131 GQMSLGLVLVKLATETIHVTS 151 (326)
T ss_pred CceEEEEEEEEeecceeeccC
Confidence 999999999999998876333
No 35
>PHA03123 dUTPase; Provisional
Probab=97.60 E-value=0.00031 Score=64.42 Aligned_cols=78 Identities=21% Similarity=0.229 Sum_probs=57.6
Q ss_pred EEEEEcCceeecCCCeEEEEEe-CCCc-cccccccccceEEcCCCCCceEEEEEeCCCCcEEeeCCCEEEEEEEeecccc
Q 029402 94 KALVPTDLSIAIPEGTYAHIAP-RSGL-AWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIVTP 171 (194)
Q Consensus 94 ~~lV~Tgi~v~iP~g~~g~I~p-RSsl-a~K~gL~v~~GvIDsgYrGeI~v~L~N~s~~~~~I~~GdRIAQLV~~~~~~~ 171 (194)
..++.+|++++.|.||+-++.- +++- ..+..+.+..||||+||||.|++.++-. +.-..|++|.--.+|.+.++.+.
T Consensus 85 ~~~ldlgvr~A~p~~Yavll~q~~~~~~~~~~~~~iAnGviDsGYRG~i~avl~~~-~~~t~ipp~~l~i~L~lvkL~~~ 163 (402)
T PHA03123 85 IQQLDLGVKAAPPNEYALLLIQCIDSALADEDDFFIANGVIDAGYRGRICALLYYK-KGVTIILPGDLMIYLFPVKLAQS 163 (402)
T ss_pred EEEeccceeeecCCCeEEEEEeecCCCCCCCcceEEEeeeeccCccceEEEEEEec-CcceeeCCCceEEEEEeeeeecc
Confidence 4678899999999999886553 3332 2232345579999999999999988752 33344999999999998887754
Q ss_pred c
Q 029402 172 D 172 (194)
Q Consensus 172 ~ 172 (194)
.
T Consensus 164 ~ 164 (402)
T PHA03123 164 R 164 (402)
T ss_pred e
Confidence 3
No 36
>PHA03130 dUTPase; Provisional
Probab=97.44 E-value=0.00054 Score=62.09 Aligned_cols=74 Identities=26% Similarity=0.417 Sum_probs=57.6
Q ss_pred EEEEEcCceeecCCCeEEEEE-eCCCccccccccccceEEcCCCCCceEEEEEeCCCCcEEeeCCCEEEEEEEeecccc
Q 029402 94 KALVPTDLSIAIPEGTYAHIA-PRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIVTP 171 (194)
Q Consensus 94 ~~lV~Tgi~v~iP~g~~g~I~-pRSsla~K~gL~v~~GvIDsgYrGeI~v~L~N~s~~~~~I~~GdRIAQLV~~~~~~~ 171 (194)
..+|++|+++.+|.||+..|. +-+|-+ +-.+..|+||+||||-++..++- ....-.+.+|+--.+|.|.++...
T Consensus 59 ~~~v~~~lr~a~p~~~~~~~~~~~~~~~---~~~~~~g~idsgyrg~~~av~~a-p~~~~~~~pg~l~~~l~~~~~~~~ 133 (368)
T PHA03130 59 VGRVPLDLRVAMPTDFCAVVHAPPTAGA---PYRVALGLIDSGYRGTVQAVVLA-PGETRRFAPGELRVDLTFLRVSGS 133 (368)
T ss_pred EEEecCceEEecCCCeEEEEeccccCCC---CceeEEEEeccCccceEEEEEEc-CCcccccCCCceEeeeEEEEeecC
Confidence 368999999999999999998 444322 11245799999999999977654 355668899999999999988653
No 37
>PF04797 Herpes_ORF11: Herpesvirus dUTPase protein; InterPro: IPR006882 This family of proteins are found in Herpesvirus. This family includes proteins called ORF10 and ORF11 amongst others.
Probab=96.98 E-value=0.017 Score=52.79 Aligned_cols=85 Identities=14% Similarity=0.115 Sum_probs=68.0
Q ss_pred eeeEEcCcceEEcCCCEEEEEcCceeecCCC-eE--EEEEeCCCccccccccccceEEcCCCCCceEEEEEeCCCCcEEe
Q 029402 78 GYDLSSSTETKVPARGKALVPTDLSIAIPEG-TY--AHIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFEV 154 (194)
Q Consensus 78 G~DL~a~~d~~I~Pg~~~lV~Tgi~v~iP~g-~~--g~I~pRSsla~K~gL~v~~GvIDsgYrGeI~v~L~N~s~~~~~I 154 (194)
-.=||...+++|+|++.+.|..+..+..+.. .. .+|.+-+.. ..+.+.+.+|-|+ +.+.|.++|.++.+++|
T Consensus 264 v~~iY~~~~~~IpP~es~~v~~~~~y~~~~~~~~~~~~I~~~~~~---~~~~i~p~~W~P~--~~~~ltv~N~s~~p~~I 338 (379)
T PF04797_consen 264 VPPIYPGPEKTIPPGESTKVKYNNMYEQGNPSKITAFFICGLNDN---SDFVISPCEWLPG--SPLQLTVHNPSNFPITI 338 (379)
T ss_pred eeeEeCCCceEECCCCEEEEEEccEEEecCCCccceEEEEcCCCC---ceEEEeeeEECCC--CceEEEEEcCCCceEEe
Confidence 6778889999999999999999888776533 22 234444432 2456789999886 57999999999999999
Q ss_pred eCCCEEEEEEEee
Q 029402 155 KRGDRIAQLIIEK 167 (194)
Q Consensus 155 ~~GdRIAQLV~~~ 167 (194)
++|+++|+.+|..
T Consensus 339 ~~gt~la~Aif~~ 351 (379)
T PF04797_consen 339 SRGTPLAQAIFIY 351 (379)
T ss_pred cCCCEEEEEEEEe
Confidence 9999999999984
No 38
>PF06559 DCD: 2'-deoxycytidine 5'-triphosphate deaminase (DCD); InterPro: IPR010550 This family consists of several bacterial 2'-deoxycytidine 5'-triphosphate deaminase proteins (3.5.4.13 from EC).; GO: 0008829 dCTP deaminase activity; PDB: 2R9Q_C.
Probab=96.76 E-value=0.0077 Score=54.67 Aligned_cols=83 Identities=20% Similarity=0.336 Sum_probs=55.3
Q ss_pred ceEEcCCCEEEEEcCceeecCCCeEEEEEeCCCccccccccc-cceEEcCCCC-------Cc-eEEEEEeCCCCcEEeeC
Q 029402 86 ETKVPARGKALVPTDLSIAIPEGTYAHIAPRSGLAWKHSMDV-GAGVIDADYR-------GP-VGVILFNHSDVDFEVKR 156 (194)
Q Consensus 86 d~~I~Pg~~~lV~Tgi~v~iP~g~~g~I~pRSsla~K~gL~v-~~GvIDsgYr-------Ge-I~v~L~N~s~~~~~I~~ 156 (194)
.++|.|++.+++-..+.+.||++|++.+.|--.+.- -..+ .+|+.||||- |. -.+.+..+ +.||.|+.
T Consensus 247 ~liLdP~eFYil~Sre~v~iPp~~aAEM~p~~~~vG--EfRvHYAGFFDPGFG~~~agg~Gsr~VLEVR~h-evPF~leh 323 (364)
T PF06559_consen 247 ELILDPGEFYILASREAVHIPPDYAAEMVPFDPLVG--EFRVHYAGFFDPGFGHAEAGGAGSRAVLEVRSH-EVPFILEH 323 (364)
T ss_dssp EEEE-TT--EEEEEEEEE-B-TTEEEEEEE-GGGTT--TEEEES--EE-TTTT-S-TTSS-EEEEEEEEES-SS-EEEET
T ss_pred eEEECCcceEEEeecccccCChhHhhhccccccccC--ceEEeeccccCCCCCcccccCCCceEEEEEecC-CCCeeeeC
Confidence 488999999999999999999999999998765531 1334 5999999992 11 22555554 78999999
Q ss_pred CCEEEEEEEeecccc
Q 029402 157 GDRIAQLIIEKIVTP 171 (194)
Q Consensus 157 GdRIAQLV~~~~~~~ 171 (194)
|+.|++||++++...
T Consensus 324 GQ~vgrLvyE~m~~~ 338 (364)
T PF06559_consen 324 GQIVGRLVYERMAER 338 (364)
T ss_dssp T-EEEEEEEEEBSS-
T ss_pred CcEEEEEEehhhccC
Confidence 999999999998754
No 39
>PF05784 Herpes_UL82_83: Betaherpesvirus UL82/83 protein N terminus; InterPro: IPR008649 This family represents the N-terminal region of the UL82 and UL83 proteins from Betaherpesvirus sp., such as Human cytomegalovirus (HHV-5) (Human herpesvirus 5). As viruses are reliant upon their host cell to serve as proper environments for their replication, many have evolved mechanisms to alter intracellular conditions to suit their own needs. HHV-5 induces quiescent cells to enter the cell cycle and then arrests them in late G(1), before they enter the S phase, a cell cycle compartment that is presumably favourable for viral replication. The protein product of the HHV-5 UL82 gene, pp71, can accelerate the movement of cells through the G(1) phase of the cell cycle. This activity would help infected cells reach the late G(1) arrest point sooner and thus may stimulate the infectious cycle. pp71 also induces DNA synthesis in quiescent cells, but a pp71 mutant protein that is unable to induce quiescent cells to enter the cell cycle still retains the ability to accelerate the G(1) phase. Thus, the mechanism through which pp71 accelerates G(1) cell cycle progression appears to be distinct from the one that it employs to induce quiescent cells to exit G(0) and subsequently enter the S phase [].; GO: 0009405 pathogenesis; PDB: 3BW9_C.
Probab=96.41 E-value=0.0008 Score=61.17 Aligned_cols=87 Identities=10% Similarity=0.159 Sum_probs=0.0
Q ss_pred CCceeeeEEcCcceEEcCCCEEEEEcCceeecCCCeEEEEEeCCCccccccccccceEEcCCCCCceEEEEEeCCCCcEE
Q 029402 74 PLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFE 153 (194)
Q Consensus 74 ~~dAG~DL~a~~d~~I~Pg~~~lV~Tgi~v~iP~g~~g~I~pRSsla~K~gL~v~~GvIDsgYrGeI~v~L~N~s~~~~~ 153 (194)
..+.||-+.++.++.+.||++..+.+...++-...|.|+++|+.- -||.+..|.|.+. =.|.+.+.|.++ ++.
T Consensus 256 h~~NGf~V~~Pr~i~l~pg~~~~v~id~~feS~~~~~~lF~Pk~i----pGlsis~~~w~~~--~~l~i~i~a~~~-~v~ 328 (348)
T PF05784_consen 256 HPRNGFTVLCPRNIHLKPGKTSHVTIDNAFESDQTYIGLFFPKDI----PGLSISCGPWMER--QPLFIEIRATGK-NVE 328 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCEEEECCcceecCCCCeEEEEEeeeEecCCceEEEEecccC----CCceeeeeccCCC--ceEEEEEEeccc-cee
Confidence 458999999999999999999999998888887889999999865 3899999999874 469999999866 999
Q ss_pred eeCCCEEEEEEEee
Q 029402 154 VKRGDRIAQLIIEK 167 (194)
Q Consensus 154 I~~GdRIAQLV~~~ 167 (194)
|+.++.|+.+-|++
T Consensus 329 i~~~q~LG~lhFf~ 342 (348)
T PF05784_consen 329 IRYGQPLGSLHFFP 342 (348)
T ss_dssp --------------
T ss_pred ecccceeeeEEEee
Confidence 99999999998876
No 40
>PHA03365 hypothetical protein; Provisional
Probab=92.49 E-value=1.4 Score=41.22 Aligned_cols=78 Identities=12% Similarity=0.101 Sum_probs=54.5
Q ss_pred cceEEcCCCEEEEEcCceee--cCCCeEEEEEeCCCccccccccccceEEcCCCCCceEEEEEeCCCCcEEeeCCCEEEE
Q 029402 85 TETKVPARGKALVPTDLSIA--IPEGTYAHIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFEVKRGDRIAQ 162 (194)
Q Consensus 85 ~d~~I~Pg~~~lV~Tgi~v~--iP~g~~g~I~pRSsla~K~gL~v~~GvIDsgYrGeI~v~L~N~s~~~~~I~~GdRIAQ 162 (194)
-.+.|+|++.+.|.-+=... +....-++|..-.+. . ...+..--|-++ ....|.+.|.+..+++|..|+.+||
T Consensus 292 p~V~IP~~~~t~V~YnN~Y~~~~~~~iTAiI~n~~~~--~-~f~i~~ceW~p~--~ta~I~V~N~S~fp~~i~~Gt~lg~ 366 (419)
T PHA03365 292 PPVIIPPNCSTVVEYNNTYYSPLSLKITAIIVNHETN--P-DFYIYDCEWKPG--QTAKLMVTNTSNFPITISTGTHLGQ 366 (419)
T ss_pred CcEEeCCCceEEEEeCCEEEeccCCceEEEEEcCCCC--C-cEEEEeeecCCC--CeeEEEEEecCCCcEEeeCCCEeeE
Confidence 44677888877777665543 445566777754442 1 334445555543 3578899999999999999999999
Q ss_pred EEEee
Q 029402 163 LIIEK 167 (194)
Q Consensus 163 LV~~~ 167 (194)
.+|.=
T Consensus 367 A~Fi~ 371 (419)
T PHA03365 367 AIFIL 371 (419)
T ss_pred EEEEE
Confidence 99963
No 41
>PF04489 DUF570: Protein of unknown function (DUF570) ; InterPro: IPR007578 This proteins in this entry belong to the herpesvirus U10 family; there function is unknown.
Probab=83.58 E-value=19 Score=33.81 Aligned_cols=92 Identities=17% Similarity=0.220 Sum_probs=66.4
Q ss_pred CCCcccCCCceeeeEEcCcceEEcCCCEEEEEcCceeecCCCe-EEEEEeCCCccccccccccceEEcCCCCCc-eEEEE
Q 029402 67 VLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGT-YAHIAPRSGLAWKHSMDVGAGVIDADYRGP-VGVIL 144 (194)
Q Consensus 67 ~lP~r~t~~dAG~DL~a~~d~~I~Pg~~~lV~Tgi~v~iP~g~-~g~I~pRSsla~K~gL~v~~GvIDsgYrGe-I~v~L 144 (194)
-+|--..+...-+-++|+.|+...++....|.++|+..=+.+. +.+| |++.-.+.--....+|-+ |+ |+|.|
T Consensus 335 N~~ll~ePn~~~ltVhAPYDI~F~~~~~h~V~ldIrY~~~~~r~cFLV---s~~p~e~~F~T~m~vW~~---~~PLkiTL 408 (429)
T PF04489_consen 335 NSPLLNEPNPFELTVHAPYDIHFYHSRRHTVELDIRYTQPNDRQCFLV---SNLPNEDSFHTGMTVWRP---DEPLKITL 408 (429)
T ss_pred ccccccCCCCceEEEeCcceEEecCCccEEEEeeeEEcccCCceEEEE---ecCCCCCeeEeeeEEecC---CCceEEEE
Confidence 3454445556778889999999999999999999999888887 4555 334322212234456654 56 99999
Q ss_pred EeCCCCcEEeeCCCEEEEEEE
Q 029402 145 FNHSDVDFEVKRGDRIAQLII 165 (194)
Q Consensus 145 ~N~s~~~~~I~~GdRIAQLV~ 165 (194)
+-.+ ....|..|..||-|..
T Consensus 409 ~S~~-~~LviPqGtPIA~Ly~ 428 (429)
T PF04489_consen 409 WSPS-RNLVIPQGTPIATLYQ 428 (429)
T ss_pred ecCC-CceEccCCCceeEEEe
Confidence 9864 4789999999998753
No 42
>PF06284 Cytomega_UL84: Cytomegalovirus UL84 protein; InterPro: IPR010436 This family consists of several Cytomegalovirus UL84 proteins. The open reading frame UL84 of human cytomegalovirus encodes a multifunctional regulatory protein which is required for viral DNA replication and binds with high affinity to the immediate-early transactivator IE2-p86 [].
Probab=83.09 E-value=3.6 Score=38.83 Aligned_cols=84 Identities=10% Similarity=0.113 Sum_probs=58.9
Q ss_pred CceeeeEEcCcceEEcCCCEEEEEcCceeecCCCeEEEEEeCCCccccccccccceEEcCCCCCceEEEEEeCCCCcEEe
Q 029402 75 LAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFEV 154 (194)
Q Consensus 75 ~dAG~DL~a~~d~~I~Pg~~~lV~Tgi~v~iP~g~~g~I~pRSsla~K~gL~v~~GvIDsgYrGeI~v~L~N~s~~~~~I 154 (194)
++-|+|++++.|+.++ ..+.+. ++-..---|.|++.|..- -++.+.+|+|-| |-.|.|.+.--....+.|
T Consensus 372 ~~~~LdV~~PyDl~lk--~s~~LR--iYRrfYGp~LGLFvP~~r----~~l~mpVtiWlP--RTWLEi~l~~~~~~g~tl 441 (530)
T PF06284_consen 372 GEGGLDVRLPYDLPLK--TSYTLR--IYRRFYGPFLGLFVPKNR----QGLKMPVTIWLP--RTWLEITLVGSNEHGVTL 441 (530)
T ss_pred CCCceEEecccceecC--Chhhee--hhhhhcccceeEecccCc----cceeeeEEeeec--cceEEEEEEeeccccccc
Confidence 5789999999998763 222222 222234457778888754 367778999988 445666665544678999
Q ss_pred eCCCEEEEEEEeec
Q 029402 155 KRGDRIAQLIIEKI 168 (194)
Q Consensus 155 ~~GdRIAQLV~~~~ 168 (194)
.+|+-+.||.|..-
T Consensus 442 ~R~~vLG~LYFiss 455 (530)
T PF06284_consen 442 PRDDVLGRLYFISS 455 (530)
T ss_pred ccCceeeEEEEecc
Confidence 99999999999754
No 43
>PHA03124 dUTPase; Provisional
Probab=76.38 E-value=5.1 Score=37.28 Aligned_cols=72 Identities=25% Similarity=0.370 Sum_probs=47.2
Q ss_pred EEEEcCceeecCCCeEEEEEeCCCccccc--cccccceEEcCCCCCceEEEE--EeCCCC----------cEEeeCCCEE
Q 029402 95 ALVPTDLSIAIPEGTYAHIAPRSGLAWKH--SMDVGAGVIDADYRGPVGVIL--FNHSDV----------DFEVKRGDRI 160 (194)
Q Consensus 95 ~lV~Tgi~v~iP~g~~g~I~pRSsla~K~--gL~v~~GvIDsgYrGeI~v~L--~N~s~~----------~~~I~~GdRI 160 (194)
..+..-++..+|+||--.|- ..+..| --.+.+|++|+||+|-+.+.+ .|.+.+ -+.+.+|.--
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (418)
T PHA03124 46 LKIDSAIRTALPPGYGIVIS---DTAEGHAAAWEIIPGLVDADYTGLLGILLVLTDDGGNTLAGGEAGDGIVIFPPGGVH 122 (418)
T ss_pred EeehhhhhhcCCCcceEEEe---cccccchhhhhhccceecCCccceeeEEEEEecCCCccccccccCCceEEeCCCceE
Confidence 45677788889999865553 333222 123569999999999877654 554322 4667777777
Q ss_pred EEEEEeecc
Q 029402 161 AQLIIEKIV 169 (194)
Q Consensus 161 AQLV~~~~~ 169 (194)
|.|-+.++.
T Consensus 123 ~~~~~~~~~ 131 (418)
T PHA03124 123 ARLNVIKLA 131 (418)
T ss_pred EEEEEEEec
Confidence 777666554
No 44
>PF05784 Herpes_UL82_83: Betaherpesvirus UL82/83 protein N terminus; InterPro: IPR008649 This family represents the N-terminal region of the UL82 and UL83 proteins from Betaherpesvirus sp., such as Human cytomegalovirus (HHV-5) (Human herpesvirus 5). As viruses are reliant upon their host cell to serve as proper environments for their replication, many have evolved mechanisms to alter intracellular conditions to suit their own needs. HHV-5 induces quiescent cells to enter the cell cycle and then arrests them in late G(1), before they enter the S phase, a cell cycle compartment that is presumably favourable for viral replication. The protein product of the HHV-5 UL82 gene, pp71, can accelerate the movement of cells through the G(1) phase of the cell cycle. This activity would help infected cells reach the late G(1) arrest point sooner and thus may stimulate the infectious cycle. pp71 also induces DNA synthesis in quiescent cells, but a pp71 mutant protein that is unable to induce quiescent cells to enter the cell cycle still retains the ability to accelerate the G(1) phase. Thus, the mechanism through which pp71 accelerates G(1) cell cycle progression appears to be distinct from the one that it employs to induce quiescent cells to exit G(0) and subsequently enter the S phase [].; GO: 0009405 pathogenesis; PDB: 3BW9_C.
Probab=58.93 E-value=3.1 Score=38.00 Aligned_cols=73 Identities=21% Similarity=0.251 Sum_probs=0.0
Q ss_pred EEcCcceEEcCCCEEEEEcCceeecCCCeEEEEE---eCCCccc--cccccccceEEcCCCCCceEEEEEeCCCCcEE
Q 029402 81 LSSSTETKVPARGKALVPTDLSIAIPEGTYAHIA---PRSGLAW--KHSMDVGAGVIDADYRGPVGVILFNHSDVDFE 153 (194)
Q Consensus 81 L~a~~d~~I~Pg~~~lV~Tgi~v~iP~g~~g~I~---pRSsla~--K~gL~v~~GvIDsgYrGeI~v~L~N~s~~~~~ 153 (194)
|+...+..+.|+|++.+.||+.+..+.-..-++. +.|.-.. ..+|.+....+|..=.++|.+.+.|.++.++.
T Consensus 13 l~~~~~~~~~p~E~k~l~tgl~V~v~~psVicv~q~~~~~~~~~~~~~~L~vkft~~~~~~~~nl~v~V~N~s~r~l~ 90 (348)
T PF05784_consen 13 LFSTQDTPFKPHETKILKTGLSVKVSQPSVICVTQETPSSQPPHRDDTDLQVKFTVFDGQEIDNLTVDVHNPSDRPLS 90 (348)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred EEecCCCccCCCcEEEEecCceEEeCCCeEEEEEeccCCCCCcccccccceeeEEEeccccccceEEEEECCCCCcCC
Confidence 3455677899999999999999998865333333 3333222 12366667778875457899999999877643
No 45
>PF09160 FimH_man-bind: FimH, mannose binding; InterPro: IPR015243 This domain adopts a secondary structure consisting of a beta sandwich, with nine strands arranged in two sheets in a Greek key topology. It is predominantly found in bacterial mannose-specific adhesins, and is capable of binding to D-mannose []. ; PDB: 3MCY_C 1KLF_D 1QUN_L 1KIU_L 3RFZ_D 2VCO_B 1TR7_A 1UWF_A 3JWN_N.
Probab=57.15 E-value=12 Score=30.36 Aligned_cols=95 Identities=19% Similarity=0.192 Sum_probs=49.3
Q ss_pred eeeeEEcCcceEEcCCCEEEEEcCceeec----CC-CeEEEEEeCCCcccccccccc-ceEEcCC--C----C-------
Q 029402 77 AGYDLSSSTETKVPARGKALVPTDLSIAI----PE-GTYAHIAPRSGLAWKHSMDVG-AGVIDAD--Y----R------- 137 (194)
Q Consensus 77 AG~DL~a~~d~~I~Pg~~~lV~Tgi~v~i----P~-g~~g~I~pRSsla~K~gL~v~-~GvIDsg--Y----r------- 137 (194)
.-.++|..-.=.|.+|+..+|.+.-.+.+ |. .++=++..|++.++-.-+... .++.=.| | .
T Consensus 13 G~anvyV~L~p~V~~gqNlVvDLS~~i~CkND~p~g~~~Dyv~l~~Gs~~~~~l~~f~g~l~~~g~~YpfPl~s~t~~~~ 92 (147)
T PF09160_consen 13 GSANVYVNLSPSVQVGQNLVVDLSQQIFCKNDDPSGQNVDYVNLTSGSAFGGVLKNFTGSLRYYGSSYPFPLNSETTVVN 92 (147)
T ss_dssp EEEEEEE---SBE-TTSEEEEEGGGTEEEE-SSTT-T--EEEEEEEEEEEHHHHHHEEEEEEETTEEEEES-SS----EE
T ss_pred cceeEEEecCCccccCccEEEEccceEEEECCCCCcceeeeEEEccCCccCchhhhccceEEEeCcCccccccCCceEEE
Confidence 34578877666788899888888764443 55 355577777655432111111 1111000 0 0
Q ss_pred ---C-----ceEEEEEeC-CCCcEEeeCCCEEEEEEEeecccc
Q 029402 138 ---G-----PVGVILFNH-SDVDFEVKRGDRIAQLIIEKIVTP 171 (194)
Q Consensus 138 ---G-----eI~v~L~N~-s~~~~~I~~GdRIAQLV~~~~~~~ 171 (194)
| .+++-|.=. ...-+.|++||.||+|.+++..+.
T Consensus 93 ~~~~~~~p~p~~LYLtp~~~a~Gv~I~~G~~iAtl~~~k~~t~ 135 (147)
T PF09160_consen 93 YQSGNYQPWPIKLYLTPVSAAGGVVINKGDLIATLNMHKTNTY 135 (147)
T ss_dssp E-SSS-EE--EEEEEEESTTSSEEEE-TTSEEEEEEEEEEESS
T ss_pred ecCCCcccccEEEEEEEccCCCcEEEeCCCEEEEEEEEEeccc
Confidence 1 123333222 133589999999999999987764
No 46
>cd00235 TLP-20 Telokin-like protein-20 (TLP-20) domain; a baculovirus protein that shares some antigenic similarities to the smooth muscle protein telokin, a kinase-related protein
Probab=40.41 E-value=59 Score=25.09 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=22.9
Q ss_pred CCceEEEEEeCCCCcEEeeCCCEEEEEEE
Q 029402 137 RGPVGVILFNHSDVDFEVKRGDRIAQLII 165 (194)
Q Consensus 137 rGeI~v~L~N~s~~~~~I~~GdRIAQLV~ 165 (194)
++.+.++|+| .++..+++|+.|.|++.
T Consensus 80 ~~~i~viLfn--~kp~~lkk~~~iFki~~ 106 (108)
T cd00235 80 SNGINVILFN--KKPIILKKGSCIFKIKY 106 (108)
T ss_pred CCCeEEEEEE--ccceEEEcCcEEEEEEe
Confidence 4568899999 46899999999999875
No 47
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=39.22 E-value=43 Score=25.83 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=23.2
Q ss_pred CcceEEcCCCEEEEEcCceeecCCC-eEEEEEe
Q 029402 84 STETKVPARGKALVPTDLSIAIPEG-TYAHIAP 115 (194)
Q Consensus 84 ~~d~~I~Pg~~~lV~Tgi~v~iP~g-~~g~I~p 115 (194)
+..++|+|++...|+. .+.||+. |-|.+++
T Consensus 84 ~~~Vtl~~~~sk~V~~--~i~~P~~~f~G~ilG 114 (121)
T PF06030_consen 84 PKEVTLPPNESKTVTF--TIKMPKKAFDGIILG 114 (121)
T ss_pred CcEEEECCCCEEEEEE--EEEcCCCCcCCEEEe
Confidence 3458999999999995 6778965 7776665
No 48
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=36.68 E-value=52 Score=30.07 Aligned_cols=65 Identities=15% Similarity=0.260 Sum_probs=45.1
Q ss_pred eeecCC-CeEEEEEeCCCccccccccccceEEcCCCCCceEEE--EEeCCCCcEEeeCCCEEEEEEEeec
Q 029402 102 SIAIPE-GTYAHIAPRSGLAWKHSMDVGAGVIDADYRGPVGVI--LFNHSDVDFEVKRGDRIAQLIIEKI 168 (194)
Q Consensus 102 ~v~iP~-g~~g~I~pRSsla~K~gL~v~~GvIDsgYrGeI~v~--L~N~s~~~~~I~~GdRIAQLV~~~~ 168 (194)
.+.+|. |..+ +|++|+-++-.-|.+-.|.+-|| .|+|.+. ..+.+.+.+.+++-.|=.=.||...
T Consensus 18 ~~~~p~~GvTA-lFG~SGsGKTslin~IaGL~rPd-eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDA 85 (352)
T COG4148 18 NFTLPARGITA-LFGPSGSGKTSLINMIAGLTRPD-EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDA 85 (352)
T ss_pred eccCCCCceEE-EecCCCCChhhHHHHHhccCCcc-ccEEEECCEEeecccCCcccChhhheeeeEeecc
Confidence 445676 6666 89999987443345579999998 4877662 3444677788888888766777544
No 49
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=35.00 E-value=38 Score=29.84 Aligned_cols=65 Identities=18% Similarity=0.130 Sum_probs=41.7
Q ss_pred cCceeecCCCeEEEEEeCCCccccccccccceEEcCCCCCceEEEEEeCCCCcEEee----CCCEEEEEEEeecc
Q 029402 99 TDLSIAIPEGTYAHIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFEVK----RGDRIAQLIIEKIV 169 (194)
Q Consensus 99 Tgi~v~iP~g~~g~I~pRSsla~K~gL~v~~GvIDsgYrGeI~v~L~N~s~~~~~I~----~GdRIAQLV~~~~~ 169 (194)
-++.+++.+|-.-=|.+.||.++-.-..+..|.-.+ +.|+|.+-- .+..-+ .--|.+||||....
T Consensus 24 ~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p-~~G~I~~~G-----~~~~~~~~~~~~~~~VQmVFQDp~ 92 (252)
T COG1124 24 NNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP-SSGSILLDG-----KPLAPKKRAKAFYRPVQMVFQDPY 92 (252)
T ss_pred cceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC-CCceEEECC-----cccCccccchhhccceeEEecCCc
Confidence 456778888877778999998743222346787666 779886532 111111 33678999997543
No 50
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=34.92 E-value=27 Score=30.41 Aligned_cols=42 Identities=24% Similarity=0.426 Sum_probs=30.3
Q ss_pred CceeecCCCeEEEEEeCCCccccccccccceEEcCCCCCceEE
Q 029402 100 DLSIAIPEGTYAHIAPRSGLAWKHSMDVGAGVIDADYRGPVGV 142 (194)
Q Consensus 100 gi~v~iP~g~~g~I~pRSsla~K~gL~v~~GvIDsgYrGeI~v 142 (194)
++.+.|-.|-.-.+.++|+.++-.-+.+.+|+++|. +|++++
T Consensus 23 ~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~-~G~i~l 64 (259)
T COG4525 23 DVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS-RGSIQL 64 (259)
T ss_pred ccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc-cceEEE
Confidence 445556666666788999988544455679999986 688765
No 51
>PF03712 Cu2_monoox_C: Copper type II ascorbate-dependent monooxygenase, C-terminal domain; PDB: 1YI9_A 3MLL_A 1SDW_A 3MID_A 1YIP_A 3PHM_A 3MIC_A 3MIB_A 1OPM_A 3MIG_A ....
Probab=31.17 E-value=2.3e+02 Score=22.48 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=12.0
Q ss_pred ceeeeEEcCcceEEcCCCEE
Q 029402 76 AAGYDLSSSTETKVPARGKA 95 (194)
Q Consensus 76 dAG~DL~a~~d~~I~Pg~~~ 95 (194)
+||.=+.....+.|+||+..
T Consensus 3 ~agvl~~g~~~~~IPP~~~~ 22 (156)
T PF03712_consen 3 DAGVLELGSSYFSIPPGAES 22 (156)
T ss_dssp EEEEEEEEESSEEE-TT-SE
T ss_pred EEEEEEEcccccccCcCCCc
Confidence 57755555556699999865
No 52
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=27.82 E-value=41 Score=29.68 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=36.3
Q ss_pred cCCCEEEEEcCceeecCCCeEEEEEeCCCccccccccccceEEcCCCCCceEEE
Q 029402 90 PARGKALVPTDLSIAIPEGTYAHIAPRSGLAWKHSMDVGAGVIDADYRGPVGVI 143 (194)
Q Consensus 90 ~Pg~~~lV~Tgi~v~iP~g~~g~I~pRSsla~K~gL~v~~GvIDsgYrGeI~v~ 143 (194)
.|++. .+=.++.+.|++|-+.-|.++|+-+.-.-|....|.||+.+ |++.+.
T Consensus 13 yp~~~-~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~-G~i~~~ 64 (258)
T COG3638 13 YPGGH-QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTS-GEILFN 64 (258)
T ss_pred cCCCc-eeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCc-ceEEec
Confidence 45553 33345788899998888999999764333455678999986 766543
No 53
>PF00818 Ice_nucleation: Ice nucleation protein repeat; InterPro: IPR000258 Certain Gram-negative bacteria express proteins that enable them to promote nucleation of ice at relatively high temperatures (above -5C) [, ]. These proteins are localised at the outer membrane surface and can cause frost damage to many plants. The primary structure of the proteins contains a highly repetitive domain that dominates the sequence. The domain comprises a number of 48-residue repeats, which themselves contain 3 blocks of 16 residues, the first 8 of which are identical. It is thought that the repetitive domain may be responsible for aligning water molecules in the seed crystal. [.........48.residues.repeated.domain..........] / / | | \ \ AGYGSTxTagxxssli AGYGSTxTagxxsxlt AGYGSTxTaqxxsxlt [16.residues...] [16.residues...] [16.residues...] ; GO: 0009279 cell outer membrane
Probab=25.24 E-value=32 Score=17.77 Aligned_cols=6 Identities=67% Similarity=1.221 Sum_probs=4.8
Q ss_pred CCCCcC
Q 029402 188 GFGSTG 193 (194)
Q Consensus 188 GFGSTG 193 (194)
|||||-
T Consensus 1 GYGSTq 6 (16)
T PF00818_consen 1 GYGSTQ 6 (16)
T ss_pred CCCccc
Confidence 789984
No 54
>PF06088 TLP-20: Nucleopolyhedrovirus telokin-like protein-20 (TLP20); InterPro: IPR009092 The baculovirus, Autographa californica nuclear polyhedrosis virus (AcMNPV), telokin-like protein (Tlp20) lies in a region of the baculoviral genome that is expressed late in the viral replication cycle, however its function is unknown. Tlp20 was discovered using anti-telokin antibodies, telokin being the C-terminal domain of smooth-muscle myosin light-chain kinase []. Both Tlp20 and telokin display a seven-stranded antiparallel beta-barrel structure, although the 3-dimensional structures of the beta-barrels are different and there is no sequence homology between the two. Tlp20 is structurally similar to dUTPase in its fold and trimeric assembly [].; PDB: 1TUL_A.
Probab=22.81 E-value=1.5e+02 Score=24.64 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=19.2
Q ss_pred CceEEEEEeCCCCcEEeeCCCEEEEEEEee
Q 029402 138 GPVGVILFNHSDVDFEVKRGDRIAQLIIEK 167 (194)
Q Consensus 138 GeI~v~L~N~s~~~~~I~~GdRIAQLV~~~ 167 (194)
+.|.++|+|.. ++.|++|+.|+|+++-.
T Consensus 81 ~~ln~iLfn~k--~~~lkK~~~iF~i~~~~ 108 (169)
T PF06088_consen 81 NGLNAILFNIK--PIVLKKGQCIFKIVYWN 108 (169)
T ss_dssp S--EEEEEESS---EEE-TT-EEEEEEEE-
T ss_pred CCceEEEEEec--ceeeecCceEEEEEecC
Confidence 45788888854 99999999999999976
No 55
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=21.80 E-value=1.1e+02 Score=29.91 Aligned_cols=58 Identities=22% Similarity=0.296 Sum_probs=41.9
Q ss_pred cCCCEEEEEcCceeecCCCeEEEEEeCCCccccccccccceEEcCCCCCceEEE---EEeCCC
Q 029402 90 PARGKALVPTDLSIAIPEGTYAHIAPRSGLAWKHSMDVGAGVIDADYRGPVGVI---LFNHSD 149 (194)
Q Consensus 90 ~Pg~~~lV~Tgi~v~iP~g~~g~I~pRSsla~K~gL~v~~GvIDsgYrGeI~v~---L~N~s~ 149 (194)
.|... .+..++.+.+++|-.--|.++||-++-.-+.+..|.--| |.|+|.+- +.|.+.
T Consensus 330 y~~g~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~-~~G~I~vng~~l~~l~~ 390 (559)
T COG4988 330 YPDGK-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP-TQGEIRVNGIDLRDLSP 390 (559)
T ss_pred cCCCC-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC-CCceEEECCccccccCH
Confidence 34443 666778888888888889999998743334556888776 99999875 666653
No 56
>PHA02762 hypothetical protein; Provisional
Probab=21.35 E-value=2.5e+02 Score=19.20 Aligned_cols=37 Identities=22% Similarity=0.417 Sum_probs=22.1
Q ss_pred EEcCCCCCceEEEEEeCCCC---------cEEeeCCCEEEEEEEeecc
Q 029402 131 VIDADYRGPVGVILFNHSDV---------DFEVKRGDRIAQLIIEKIV 169 (194)
Q Consensus 131 vIDsgYrGeI~v~L~N~s~~---------~~~I~~GdRIAQLV~~~~~ 169 (194)
.||.+| |+|.+.+ |.+-+ .+-|-...|||-+-++|..
T Consensus 4 ~idn~f-gnlii~~-~rs~~ks~eg~afvtigide~g~iayisiep~d 49 (62)
T PHA02762 4 LIDNDF-GNLIIEF-KRNVEKSFEGEAFVTIGIDENDKISYISIEPLD 49 (62)
T ss_pred EecCCC-ccEEEEE-ecCccccccccEEEEEeECCCCcEEEEEecccc
Confidence 478887 7776666 54311 2335566677777666543
No 57
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=20.62 E-value=3.5e+02 Score=19.73 Aligned_cols=64 Identities=22% Similarity=0.448 Sum_probs=35.8
Q ss_pred ceEEcCCCEEEEEcCceeecCCCeEEEEEeCCCccccccccccce--EEcCCCCCceEEEEEeCCCCcEEeeCCCEEEEE
Q 029402 86 ETKVPARGKALVPTDLSIAIPEGTYAHIAPRSGLAWKHSMDVGAG--VIDADYRGPVGVILFNHSDVDFEVKRGDRIAQL 163 (194)
Q Consensus 86 d~~I~Pg~~~lV~Tgi~v~iP~g~~g~I~pRSsla~K~gL~v~~G--vIDsgYrGeI~v~L~N~s~~~~~I~~GdRIAQL 163 (194)
|+.+.|+....++ +|+++.+.++..++-. .+... .+.+ | .+.+.+ ....+.+..++.=+++
T Consensus 3 di~l~~g~~~~~~------~~~~~~~~iyv~~G~~-----~v~~~~~~~~~---~--~~~~l~-~g~~i~~~a~~~~a~~ 65 (104)
T PF05726_consen 3 DIKLEPGASFTLP------LPPGHNAFIYVLEGSV-----EVGGEEDPLEA---G--QLVVLE-DGDEIELTAGEEGARF 65 (104)
T ss_dssp EEEE-TT-EEEEE------EETT-EEEEEEEESEE-----EETTTTEEEET---T--EEEEE--SECEEEEEESSSSEEE
T ss_pred EEEECCCCEEEee------cCCCCEEEEEEEECcE-----EECCCcceECC---C--cEEEEC-CCceEEEEECCCCcEE
Confidence 5678888875555 6899999999887742 11111 2332 2 233334 5667777777555666
Q ss_pred EEe
Q 029402 164 IIE 166 (194)
Q Consensus 164 V~~ 166 (194)
+++
T Consensus 66 lll 68 (104)
T PF05726_consen 66 LLL 68 (104)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 58
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=20.14 E-value=2e+02 Score=24.90 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=23.4
Q ss_pred ceEEcCCCEEEEEcCceeecCCCeEEEEEeCCC
Q 029402 86 ETKVPARGKALVPTDLSIAIPEGTYAHIAPRSG 118 (194)
Q Consensus 86 d~~I~Pg~~~lV~Tgi~v~iP~g~~g~I~pRSs 118 (194)
..+++||+...+.-|+++.|++|.+=.+.+..+
T Consensus 147 ~~t~~aG~~l~L~PGESiTL~Pg~yH~Fw~e~g 179 (225)
T PF07385_consen 147 RRTVPAGTQLRLNPGESITLPPGIYHWFWGEGG 179 (225)
T ss_dssp EEEE-TT-EEEE-TT-EEEE-TTEEEEEEE-TT
T ss_pred EEEecCCceEEeCCCCeEeeCCCCeeeEEecCC
Confidence 367899999999999999999999888888755
Done!