BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029406
(194 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224059705|ref|XP_002299976.1| predicted protein [Populus trichocarpa]
gi|222847234|gb|EEE84781.1| predicted protein [Populus trichocarpa]
Length = 194
Score = 324 bits (830), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 163/194 (84%), Positives = 173/194 (89%), Gaps = 2/194 (1%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
M KE LM AKELKRLQS+PVR DRFI S+VSRLLKSDL++VLAEFQRQDQVFLCMKLYDV
Sbjct: 1 MGKEGLMAAKELKRLQSNPVRLDRFITSNVSRLLKSDLLAVLAEFQRQDQVFLCMKLYDV 60
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
VRKEIWYRPDMF +RDMLMMLARNKKV EA QVW DL+REEVLFDQHTFGDIIRAF D+G
Sbjct: 61 VRKEIWYRPDMFLFRDMLMMLARNKKVDEANQVWRDLRREEVLFDQHTFGDIIRAFLDNG 120
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
LPS+AM IY EMR SP PISLPFRVILKGLIP+PE RE+VKDDFLELFPDMIVYDP ED
Sbjct: 121 LPSKAMDIYEEMRQSPDPPISLPFRVILKGLIPFPELREEVKDDFLELFPDMIVYDPAED 180
Query: 181 LFEDQEWRRESDEE 194
LFEDQE RE D E
Sbjct: 181 LFEDQE--REKDRE 192
>gi|147841740|emb|CAN68786.1| hypothetical protein VITISV_024068 [Vitis vinifera]
gi|296083864|emb|CBI24252.3| unnamed protein product [Vitis vinifera]
Length = 194
Score = 322 bits (826), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 159/194 (81%), Positives = 175/194 (90%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
M KE L+ AKELKRL+S PVRFDRF++S VSRLL+SDLVSVLAEFQRQDQVFL MKLYDV
Sbjct: 1 MGKEGLIAAKELKRLRSDPVRFDRFMRSSVSRLLRSDLVSVLAEFQRQDQVFLSMKLYDV 60
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
VRKEIWYRPDM+FYRDMLMMLARNKKV E K+VWEDLKREEVLFDQHTFGDI+RAF D G
Sbjct: 61 VRKEIWYRPDMYFYRDMLMMLARNKKVDETKRVWEDLKREEVLFDQHTFGDIVRAFLDGG 120
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
LPSEAM IY EMR SP P+SLP+RVILKGL+PYPE REKVKDDFLELFP MIVYDPPED
Sbjct: 121 LPSEAMDIYEEMRRSPDPPLSLPYRVILKGLLPYPELREKVKDDFLELFPGMIVYDPPED 180
Query: 181 LFEDQEWRRESDEE 194
LFED++ R ES+++
Sbjct: 181 LFEDEDGRTESEDD 194
>gi|225436656|ref|XP_002280518.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Vitis vinifera]
Length = 248
Score = 322 bits (825), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 159/194 (81%), Positives = 175/194 (90%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
M KE L+ AKELKRL+S PVRFDRF++S VSRLL+SDLVSVLAEFQRQDQVFL MKLYDV
Sbjct: 55 MGKEGLIAAKELKRLRSDPVRFDRFMRSSVSRLLRSDLVSVLAEFQRQDQVFLSMKLYDV 114
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
VRKEIWYRPDM+FYRDMLMMLARNKKV E K+VWEDLKREEVLFDQHTFGDI+RAF D G
Sbjct: 115 VRKEIWYRPDMYFYRDMLMMLARNKKVDETKRVWEDLKREEVLFDQHTFGDIVRAFLDGG 174
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
LPSEAM IY EMR SP P+SLP+RVILKGL+PYPE REKVKDDFLELFP MIVYDPPED
Sbjct: 175 LPSEAMDIYEEMRRSPDPPLSLPYRVILKGLLPYPELREKVKDDFLELFPGMIVYDPPED 234
Query: 181 LFEDQEWRRESDEE 194
LFED++ R ES+++
Sbjct: 235 LFEDEDGRTESEDD 248
>gi|356569420|ref|XP_003552899.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Glycine max]
Length = 234
Score = 314 bits (804), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 154/193 (79%), Positives = 169/193 (87%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
M KE L+VAKELKR +S PVR DRFI+S VSRLLKSDLV+VLAEFQRQ+Q FLC+KLYD+
Sbjct: 38 MGKEGLVVAKELKRFRSDPVRLDRFIRSSVSRLLKSDLVAVLAEFQRQNQFFLCVKLYDI 97
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
VRKEIWYRPDMFFYRDMLMMLARNK+V EAK+VW DLK EEVLFDQHTFGDIIRAF D+G
Sbjct: 98 VRKEIWYRPDMFFYRDMLMMLARNKRVEEAKKVWGDLKTEEVLFDQHTFGDIIRAFLDNG 157
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
LPSEAM IY EMR SP P+SLPFRVILKGLIPYPE REKVKDDFLE+FP MI+YDPPED
Sbjct: 158 LPSEAMDIYEEMRQSPEPPLSLPFRVILKGLIPYPELREKVKDDFLEIFPGMIIYDPPED 217
Query: 181 LFEDQEWRRESDE 193
LFED + + D
Sbjct: 218 LFEDNKQHNDRDN 230
>gi|356523434|ref|XP_003530344.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Glycine max]
Length = 232
Score = 313 bits (803), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 154/193 (79%), Positives = 169/193 (87%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
M KE L+VAKELKR +S PVR DRFI+S VSRLLKSDLV+VLAEFQRQ+Q FLC+KLYD+
Sbjct: 40 MGKEGLVVAKELKRFRSDPVRLDRFIRSSVSRLLKSDLVAVLAEFQRQNQFFLCVKLYDI 99
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
VRKEIWYRPDMFFYRDMLMMLARNK+V EAK+VW DLK EEVLFDQHTFGDIIRAF D+G
Sbjct: 100 VRKEIWYRPDMFFYRDMLMMLARNKRVEEAKKVWGDLKTEEVLFDQHTFGDIIRAFLDNG 159
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
LPSEAM IY EMR SP P+SLPFRVILKGLIPYPE REKVKDDFLE+FP MI+YDPPED
Sbjct: 160 LPSEAMDIYEEMRQSPEPPLSLPFRVILKGLIPYPELREKVKDDFLEIFPGMIIYDPPED 219
Query: 181 LFEDQEWRRESDE 193
LFED + + D
Sbjct: 220 LFEDNKQHNDRDN 232
>gi|116830983|gb|ABK28447.1| unknown [Arabidopsis thaliana]
Length = 197
Score = 312 bits (799), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 155/196 (79%), Positives = 171/196 (87%), Gaps = 2/196 (1%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
MSKE L+ AKELKRLQ+ VR DRFI SHVSRLLKSDLVSVLAEFQRQ+QVFLCMKLY+V
Sbjct: 1 MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
VR+EIWYRPDMFFYRDMLMMLARNKKV E K+VWEDLK+EEVLFDQHTFGD++R F D+
Sbjct: 61 VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
LP EAM +Y EMR SP P+SLPFRVILKGL+PYPE REKVKDDFLELFP MIVYDPPED
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180
Query: 181 LFE--DQEWRRESDEE 194
+ E D+E R +SD E
Sbjct: 181 ICEDSDEEARTDSDLE 196
>gi|145336941|ref|NP_176425.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122180316|sp|Q1PFH7.1|PPR89_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62350
gi|91806011|gb|ABE65734.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332195836|gb|AEE33957.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 196
Score = 312 bits (799), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 155/196 (79%), Positives = 171/196 (87%), Gaps = 2/196 (1%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
MSKE L+ AKELKRLQ+ VR DRFI SHVSRLLKSDLVSVLAEFQRQ+QVFLCMKLY+V
Sbjct: 1 MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
VR+EIWYRPDMFFYRDMLMMLARNKKV E K+VWEDLK+EEVLFDQHTFGD++R F D+
Sbjct: 61 VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
LP EAM +Y EMR SP P+SLPFRVILKGL+PYPE REKVKDDFLELFP MIVYDPPED
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180
Query: 181 LFE--DQEWRRESDEE 194
+ E D+E R +SD E
Sbjct: 181 ICEDSDEEARTDSDLE 196
>gi|297840301|ref|XP_002888032.1| hypothetical protein ARALYDRAFT_475108 [Arabidopsis lyrata subsp.
lyrata]
gi|297333873|gb|EFH64291.1| hypothetical protein ARALYDRAFT_475108 [Arabidopsis lyrata subsp.
lyrata]
Length = 196
Score = 309 bits (792), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 155/196 (79%), Positives = 171/196 (87%), Gaps = 2/196 (1%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
MSKE L+ AKELKRLQ+ VR DRFI SHVSRLLKSDLVSVLAEFQRQ+QVFLCMKLY+V
Sbjct: 1 MSKEGLIAAKELKRLQTQLVRLDRFIASHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
VR+EIWYRPDMFFYRDMLMMLARNKKV E K+VWEDLK+E VLFDQHTFGD++RAF D+
Sbjct: 61 VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEGVLFDQHTFGDLVRAFLDNE 120
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
LP EA+ +Y EMR SP P+SLPFRVILKGL+PYPE REKVKDDFLELFP MIVYDPPED
Sbjct: 121 LPLEAIRLYGEMRDSPDPPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180
Query: 181 LFE--DQEWRRESDEE 194
L E D+E R +SD E
Sbjct: 181 LCEESDEEARTDSDLE 196
>gi|449442589|ref|XP_004139064.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Cucumis sativus]
Length = 256
Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 150/194 (77%), Positives = 170/194 (87%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
M KE L+V KELKRLQS+ +R DRFI SHVSRLLKSDLV+VL E QRQ+ VFLCMKLY+V
Sbjct: 63 MGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMKLYNV 122
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
VRKE+WYRPDMFFYRDMLMMLA+NK+V E KQVWEDLK+E VLFDQHTFGDIIRA+ D+
Sbjct: 123 VRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNT 182
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
+ SEAM IY EMR SP P+SLPFRVILKGLIPYPE RE+VKDDFLELFPDMIVYDPPED
Sbjct: 183 MLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPPED 242
Query: 181 LFEDQEWRRESDEE 194
LFE+ E R +S+++
Sbjct: 243 LFEEDEDRNKSEDD 256
>gi|357438675|ref|XP_003589614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478662|gb|AES59865.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 232
Score = 306 bits (783), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 147/186 (79%), Positives = 165/186 (88%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+ KE L++ KELKRLQS PVR DRF++S+VSRLLKSDLVSVL EF RQD VFL MKLYD+
Sbjct: 36 LGKEGLIITKELKRLQSDPVRLDRFVRSNVSRLLKSDLVSVLFEFHRQDNVFLSMKLYDI 95
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
VRKEIWYRPDMFFYRDMLMMLARNK+V E K+VW+DLK E VLFDQHTFGDI+RA+ DSG
Sbjct: 96 VRKEIWYRPDMFFYRDMLMMLARNKRVDETKRVWDDLKGEGVLFDQHTFGDIVRAYLDSG 155
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
+PSEAM IY EMR SP P+SLPFRVILKGLIPYPE REK+KDDFLE+FPDMI+YDPPED
Sbjct: 156 MPSEAMDIYEEMRQSPEPPLSLPFRVILKGLIPYPELREKIKDDFLEVFPDMIIYDPPED 215
Query: 181 LFEDQE 186
LF+D E
Sbjct: 216 LFDDHE 221
>gi|356547293|ref|XP_003542050.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Glycine max]
Length = 231
Score = 298 bits (762), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 150/194 (77%), Positives = 164/194 (84%), Gaps = 1/194 (0%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
M KE L+VAKELKRL+S VR D FI+ SRLLKSDLV+VL EFQRQ+QVFLC KLYD+
Sbjct: 38 MGKEGLVVAKELKRLRSDLVRLDLFIQPSFSRLLKSDLVAVLVEFQRQNQVFLCTKLYDI 97
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
V KEIWYRPDMFFYRDMLMMLARNK+V EAK VW DLK EEVLFDQHTFGDIIRAF D+G
Sbjct: 98 VWKEIWYRPDMFFYRDMLMMLARNKRVEEAKSVWGDLKEEEVLFDQHTFGDIIRAFLDNG 157
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK-DDFLELFPDMIVYDPPE 179
LPSEAM IY EMR SP P+SLPFRVILKGLIPYPE REK+K DDFLE+FP MI+YDPPE
Sbjct: 158 LPSEAMDIYEEMRQSPEPPLSLPFRVILKGLIPYPELREKIKDDDFLEIFPGMIIYDPPE 217
Query: 180 DLFEDQEWRRESDE 193
DLFED E ++ D
Sbjct: 218 DLFEDNEQHKDRDN 231
>gi|7940277|gb|AAF70836.1|AC003113_3 F2401.8 [Arabidopsis thaliana]
Length = 281
Score = 297 bits (761), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 155/225 (68%), Positives = 171/225 (76%), Gaps = 31/225 (13%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMK---- 56
MSKE L+ AKELKRLQ+ VR DRFI SHVSRLLKSDLVSVLAEFQRQ+QVFLCMK
Sbjct: 57 MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKVNWS 116
Query: 57 -------------------------LYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAK 91
LY+VVR+EIWYRPDMFFYRDMLMMLARNKKV E K
Sbjct: 117 PPVRKFGCFDLEIGAEMEPKTKCGLLYEVVRREIWYRPDMFFYRDMLMMLARNKKVDETK 176
Query: 92 QVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+VWEDLK+EEVLFDQHTFGD++R F D+ LP EAM +Y EMR SP P+SLPFRVILKGL
Sbjct: 177 KVWEDLKKEEVLFDQHTFGDLVRGFLDNELPLEAMRLYGEMRESPDRPLSLPFRVILKGL 236
Query: 152 IPYPEFREKVKDDFLELFPDMIVYDPPEDLFE--DQEWRRESDEE 194
+PYPE REKVKDDFLELFP MIVYDPPED+ E D+E R +SD E
Sbjct: 237 VPYPELREKVKDDFLELFPGMIVYDPPEDICEDSDEEARTDSDLE 281
>gi|242059543|ref|XP_002458917.1| hypothetical protein SORBIDRAFT_03g042630 [Sorghum bicolor]
gi|241930892|gb|EES04037.1| hypothetical protein SORBIDRAFT_03g042630 [Sorghum bicolor]
Length = 523
Score = 263 bits (672), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 129/195 (66%), Positives = 157/195 (80%), Gaps = 8/195 (4%)
Query: 1 MSKESLMVAKELKRLQS------HPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLC 54
M KE LM +LKRL + HP R ++F++SHVSRLL++DL++VLAE RQD V L
Sbjct: 329 MGKEGLMAVAQLKRLAALPPAGAHP-RLEQFMRSHVSRLLRTDLLAVLAELLRQDHVILS 387
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
MK+Y VVRKEIWYRPDM+FYRDML MLARNKK+ + +QVW DLK E+VLFDQHT+GDI+R
Sbjct: 388 MKIYGVVRKEIWYRPDMYFYRDMLYMLARNKKIDDTRQVWADLKSEDVLFDQHTYGDIVR 447
Query: 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174
AF D+GL AM IY +MRSSP P+SLPFRVILKGL+PYPE REK+K DFLELFPDMIV
Sbjct: 448 AFCDAGLIDLAMEIYEDMRSSPDPPLSLPFRVILKGLVPYPELREKIKQDFLELFPDMIV 507
Query: 175 YDPPEDLFE-DQEWR 188
YDPP+ L + D+E++
Sbjct: 508 YDPPDTLSDVDEEFK 522
>gi|219886827|gb|ACL53788.1| unknown [Zea mays]
gi|219887537|gb|ACL54143.1| unknown [Zea mays]
gi|414879223|tpg|DAA56354.1| TPA: hypothetical protein ZEAMMB73_432076 [Zea mays]
gi|414879224|tpg|DAA56355.1| TPA: hypothetical protein ZEAMMB73_432076 [Zea mays]
Length = 248
Score = 260 bits (664), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 130/195 (66%), Positives = 158/195 (81%), Gaps = 8/195 (4%)
Query: 1 MSKESLMVAKELKRLQS------HPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLC 54
M KE LMV +LKRL + HP R ++F++SHVSRLL++DL++VLAE RQD V L
Sbjct: 54 MGKEGLMVVAQLKRLAALPPAGGHP-RLEQFMRSHVSRLLRTDLLAVLAELLRQDHVSLS 112
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
MK+Y VVRKEIWYRPDM+FYRDML MLARNKK+ E +QVW DLK E+VLFDQHT+GDI+R
Sbjct: 113 MKIYGVVRKEIWYRPDMYFYRDMLYMLARNKKINETRQVWADLKSEDVLFDQHTYGDIVR 172
Query: 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174
AF D+ L AM IY++MRSSP P+SLPFRVILKGL+PYPE REK+K DFLELFPDMIV
Sbjct: 173 AFCDADLIDLAMEIYDDMRSSPDPPLSLPFRVILKGLVPYPELREKIKQDFLELFPDMIV 232
Query: 175 YDPPEDLFE-DQEWR 188
YDPP+ L + D+E++
Sbjct: 233 YDPPDTLSDIDEEFK 247
>gi|125585935|gb|EAZ26599.1| hypothetical protein OsJ_10499 [Oryza sativa Japonica Group]
gi|218192624|gb|EEC75051.1| hypothetical protein OsI_11161 [Oryza sativa Indica Group]
Length = 195
Score = 259 bits (663), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 126/186 (67%), Positives = 150/186 (80%), Gaps = 5/186 (2%)
Query: 1 MSKESLMVAKELKRLQSHPV-----RFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCM 55
M KE LMV +LKRL + P R ++F++SHVSRLL++DL++VLAE RQD V L M
Sbjct: 1 MGKEGLMVVGQLKRLAALPPAGGSPRLEQFMRSHVSRLLRNDLLAVLAELLRQDHVLLSM 60
Query: 56 KLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
K+Y VVRKEIWYRPDM+FYRDML MLARNKK+ E +QVW DLK E+VLFDQHT+GDI+RA
Sbjct: 61 KIYSVVRKEIWYRPDMYFYRDMLYMLARNKKIEETRQVWADLKSEDVLFDQHTYGDIVRA 120
Query: 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVY 175
F D+GL AM Y +MRSSP P+SLPFRVILKGL+PYP+ REK+K DFLELFPDMIVY
Sbjct: 121 FCDAGLIDLAMEFYEDMRSSPDPPLSLPFRVILKGLVPYPDLREKIKQDFLELFPDMIVY 180
Query: 176 DPPEDL 181
DPP+ L
Sbjct: 181 DPPDSL 186
>gi|108707659|gb|ABF95454.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|215767688|dbj|BAG99916.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 247
Score = 259 bits (663), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 126/186 (67%), Positives = 150/186 (80%), Gaps = 5/186 (2%)
Query: 1 MSKESLMVAKELKRLQSHPV-----RFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCM 55
M KE LMV +LKRL + P R ++F++SHVSRLL++DL++VLAE RQD V L M
Sbjct: 53 MGKEGLMVVGQLKRLAALPPAGGSPRLEQFMRSHVSRLLRNDLLAVLAELLRQDHVLLSM 112
Query: 56 KLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
K+Y VVRKEIWYRPDM+FYRDML MLARNKK+ E +QVW DLK E+VLFDQHT+GDI+RA
Sbjct: 113 KIYSVVRKEIWYRPDMYFYRDMLYMLARNKKIEETRQVWADLKSEDVLFDQHTYGDIVRA 172
Query: 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVY 175
F D+GL AM Y +MRSSP P+SLPFRVILKGL+PYP+ REK+K DFLELFPDMIVY
Sbjct: 173 FCDAGLIDLAMEFYEDMRSSPDPPLSLPFRVILKGLVPYPDLREKIKQDFLELFPDMIVY 232
Query: 176 DPPEDL 181
DPP+ L
Sbjct: 233 DPPDSL 238
>gi|357112657|ref|XP_003558124.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Brachypodium distachyon]
Length = 248
Score = 259 bits (662), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 128/194 (65%), Positives = 153/194 (78%), Gaps = 6/194 (3%)
Query: 1 MSKESLMVAKELKRLQSHP-----VRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCM 55
M KE LM +LKRL + P R D++++ HVSRLL++DL++VLAE RQD V L M
Sbjct: 54 MGKEGLMAVAQLKRLAALPPAGGHQRLDQYMRLHVSRLLRTDLLAVLAELLRQDHVLLSM 113
Query: 56 KLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
K+Y VVRKEIWYRPDM+FYRDML MLARNKK+ E +QVW DLK E+VLFDQHT+GDI+R
Sbjct: 114 KIYGVVRKEIWYRPDMYFYRDMLHMLARNKKIDETRQVWADLKSEDVLFDQHTYGDIVRV 173
Query: 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVY 175
F D+GL AM Y +MRSSP P+SLPFRVILKGLIPYPE REK+K DFLELFPDMIVY
Sbjct: 174 FCDAGLIDLAMEFYEDMRSSPEPPLSLPFRVILKGLIPYPELREKIKHDFLELFPDMIVY 233
Query: 176 DPPEDLFE-DQEWR 188
DPP+ L + D+E+R
Sbjct: 234 DPPDSLSDIDEEFR 247
>gi|326531840|dbj|BAK01296.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 229
Score = 252 bits (644), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 127/194 (65%), Positives = 149/194 (76%), Gaps = 6/194 (3%)
Query: 1 MSKESLMVAKELKRLQSHP-----VRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCM 55
M KE LM +LKRL + P R ++K HVSRLL++DL++VLAE RQD V L M
Sbjct: 35 MGKEGLMAVAQLKRLAALPPAGGHQRLVEYMKLHVSRLLRTDLLAVLAELLRQDHVLLSM 94
Query: 56 KLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
K+Y VVRKEIWYRPDM+FYRDML MLARNKKV E +QVW DLK E V+FDQHT+GDI+R
Sbjct: 95 KIYGVVRKEIWYRPDMYFYRDMLHMLARNKKVDETRQVWADLKSEGVMFDQHTYGDIVRV 154
Query: 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVY 175
F D+GL AM Y +MRSSP P+SLPFRVILKGLIPYPE REK+K +FLELFPDMIVY
Sbjct: 155 FCDAGLIDLAMEFYEDMRSSPEPPLSLPFRVILKGLIPYPELREKIKQEFLELFPDMIVY 214
Query: 176 DPPEDLFE-DQEWR 188
DPP+ L + D E+R
Sbjct: 215 DPPDSLSDIDDEFR 228
>gi|357462163|ref|XP_003601363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490411|gb|AES71614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 291
Score = 248 bits (632), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 134/241 (55%), Positives = 158/241 (65%), Gaps = 55/241 (22%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLK------------------------- 35
+ KE L++ KELKRLQ+ PVR DRF++S+VSRLLK
Sbjct: 40 LGKEGLVITKELKRLQTDPVRLDRFVRSNVSRLLKSDLVSVLFEFHRQDNVFLSMKALLF 99
Query: 36 ----------SDLVSVLAEFQRQD----QVFLCMK----------------LYDVVRKEI 65
SD EF +D + + +K LYD+VRKEI
Sbjct: 100 MYWCDYMRRLSDGFDDTNEFTLEDLRIFSIGINLKYSFKLEEKKEKVKSFWLYDIVRKEI 159
Query: 66 WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEA 125
WYRPDMFFYRDML+MLARNK+V E K+VW+DLK E VLFDQHTFGDI+RA+ DSG+PSEA
Sbjct: 160 WYRPDMFFYRDMLVMLARNKRVDETKRVWDDLKGEGVLFDQHTFGDIVRAYLDSGMPSEA 219
Query: 126 MFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPEDLFEDQ 185
M IY EMR SP P+SLPFRVILKGLIPYPE REK+KDDFLE+FPDMI+YDPPEDLF+D
Sbjct: 220 MDIYEEMRQSPEPPLSLPFRVILKGLIPYPELREKIKDDFLEVFPDMIIYDPPEDLFDDH 279
Query: 186 E 186
E
Sbjct: 280 E 280
>gi|255570191|ref|XP_002526056.1| conserved hypothetical protein [Ricinus communis]
gi|223534637|gb|EEF36333.1| conserved hypothetical protein [Ricinus communis]
Length = 138
Score = 229 bits (583), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 114/138 (82%), Positives = 120/138 (86%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKV E K VW+DLKRE VLFDQHTFGDIIR
Sbjct: 1 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVDEVKLVWQDLKREGVLFDQHTFGDIIR 60
Query: 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174
AF DS LPSEAM IY EMR SP P+SLPFRVILKGL+PYP+ REKVKDDFLELFP+M V
Sbjct: 61 AFLDSELPSEAMDIYEEMRQSPEIPLSLPFRVILKGLLPYPDLREKVKDDFLELFPNMTV 120
Query: 175 YDPPEDLFEDQEWRRESD 192
YDP EDLFED+E E D
Sbjct: 121 YDPAEDLFEDREMESEDD 138
>gi|449476280|ref|XP_004154693.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Cucumis sativus]
Length = 241
Score = 222 bits (566), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 108/138 (78%), Positives = 123/138 (89%)
Query: 57 LYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116
LY+VVRKE+WYRPDMFFYRDMLMMLA+NK+V E KQVWEDLK+E VLFDQHTFGDIIRA+
Sbjct: 104 LYNVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAY 163
Query: 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176
D+ + SEAM IY EMR SP P+SLPFRVILKGLIPYPE RE+VKDDFLELFPDMIVYD
Sbjct: 164 LDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYD 223
Query: 177 PPEDLFEDQEWRRESDEE 194
PPEDLFE+ E R +S+++
Sbjct: 224 PPEDLFEEDEDRNKSEDD 241
>gi|449455076|ref|XP_004145279.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
gi|449475090|ref|XP_004154371.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
gi|449508514|ref|XP_004163333.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
Length = 255
Score = 189 bits (479), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 86/182 (47%), Positives = 135/182 (74%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+ KE+L V + LKR + +F++F+KSHVSRLLK D+V+VL E +RQ++V L +K++ +
Sbjct: 71 IGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEEVALAVKIFRL 130
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
+RK+ WY+PD++ Y+D+++ LAR+KK+ +A ++WE ++ E + D T+ ++IR F G
Sbjct: 131 IRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYG 190
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
PS+AM +Y +M+ SP P LPFR++LKGL+P+P R +VK DF ELFPD V+DPPE+
Sbjct: 191 SPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVFDPPEE 250
Query: 181 LF 182
+F
Sbjct: 251 IF 252
>gi|356538964|ref|XP_003537970.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Glycine max]
Length = 255
Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 128/182 (70%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+ KE+L V KR + +FIK+HV RLLK D+++VL E +RQ+QV L + ++ V
Sbjct: 71 IGKEALFVISGFKRFNDDEDKLHKFIKTHVLRLLKMDMIAVLTELERQEQVSLALMMFKV 130
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
++K+ WY+PD + Y+D+++ LAR KK+ E Q+WE +++E + D T+ ++IR F + G
Sbjct: 131 MQKQDWYKPDAYLYKDLIIALARAKKMDEVLQLWESMRKENLFPDSQTYTEVIRGFLNYG 190
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
P++AM IY +M++SP P LPFR++LKGL+P+P R KVK DF E+FPD +YDPP++
Sbjct: 191 SPADAMNIYEDMKNSPDPPEELPFRILLKGLLPHPLLRNKVKQDFEEIFPDSSIYDPPQE 250
Query: 181 LF 182
+F
Sbjct: 251 IF 252
>gi|15232674|ref|NP_190271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75266318|sp|Q9STF9.1|PP266_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g46870
gi|5541672|emb|CAB51178.1| putative protein [Arabidopsis thaliana]
gi|26450732|dbj|BAC42475.1| unknown protein [Arabidopsis thaliana]
gi|28950815|gb|AAO63331.1| At3g46870 [Arabidopsis thaliana]
gi|332644692|gb|AEE78213.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 257
Score = 182 bits (462), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 84/182 (46%), Positives = 131/182 (71%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+ KE+L V LKRL+ + D+FIK+HV RLLK D+++V+ E +RQ++ L +K+++V
Sbjct: 73 IGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEETALAIKMFEV 132
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
++K+ WY+PD+F Y+D+++ LA++K++ EA +WE +K+E + D T+ ++IR F G
Sbjct: 133 IQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYTEVIRGFLRDG 192
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
P++AM +Y +M SP P LPFRV+LKGL+P+P R KVK DF ELFP+ YDPPE+
Sbjct: 193 CPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELFPEKHAYDPPEE 252
Query: 181 LF 182
+F
Sbjct: 253 IF 254
>gi|225434780|ref|XP_002281924.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46870
isoform 1 [Vitis vinifera]
gi|359478900|ref|XP_003632183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46870
isoform 2 [Vitis vinifera]
gi|297745987|emb|CBI16043.3| unnamed protein product [Vitis vinifera]
Length = 252
Score = 181 bits (460), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 85/182 (46%), Positives = 131/182 (71%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+ KE+L V LKR + +FIKSHV RLLK D+V+VL E +RQ++V L ++++ V
Sbjct: 68 IGKEALFVILGLKRFKDDEENLRKFIKSHVLRLLKMDMVAVLTELERQEEVSLAVEVFRV 127
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
+RK+ WY+PD++ Y+D+++ LA+ KK+ +A Q+WE +++E++ D T+ ++IR F G
Sbjct: 128 IRKQDWYKPDVYLYKDLIIALAKCKKMDDAMQLWESMRKEDLFPDYQTYTEVIRGFLRYG 187
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
P++AM IY +M+ SP P LPFR++LKGL+P+P R +VK DF E+FPD VYDPPE+
Sbjct: 188 SPADAMNIYEDMKKSPDPPEELPFRILLKGLLPHPLLRNRVKQDFEEIFPDRHVYDPPEE 247
Query: 181 LF 182
+F
Sbjct: 248 IF 249
>gi|357122492|ref|XP_003562949.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Brachypodium distachyon]
Length = 246
Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 130/182 (71%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+ KE+L + LKR + + F+K HV+RLLK+D ++VL E +RQ++V L +K++ +
Sbjct: 62 IGKEALFAIQGLKRFKGDEEKLKEFVKRHVARLLKADKLAVLGELERQEEVDLSVKMFRI 121
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
V+KE WY+PD++ Y+D+++ LA+ KK+ EA ++W +++ E++ D T+ ++IR F G
Sbjct: 122 VQKEDWYKPDVYMYKDLIIALAKCKKMEEAMEIWGNMRDEKLFPDSQTYAEVIRGFLRYG 181
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
PS+AM IY +M+ SP P LPFRV+LKGL+P+P R +VK DF ELFP+ +YDPPE+
Sbjct: 182 SPSDAMNIYEDMKRSPDPPEELPFRVLLKGLLPHPLLRNRVKQDFEELFPERHIYDPPEE 241
Query: 181 LF 182
+F
Sbjct: 242 IF 243
>gi|297815852|ref|XP_002875809.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321647|gb|EFH52068.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 257
Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 130/182 (71%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+ KE+L V LKRL+ + +FIK+HV RLLK D+++V+ E +RQ++ L +K+++V
Sbjct: 73 IGKEALFVILGLKRLKDDDEKLQKFIKTHVFRLLKLDMLAVIGELERQEETALAIKMFEV 132
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
++K+ WY+PD+F Y+D+++ LA++K++ EA +WE +K+E + D T+ ++IR F G
Sbjct: 133 IQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYTEVIRGFLRDG 192
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
P++AM +Y +M SP P LPFRV+LKGL+P+P R KVK DF ELFP+ YDPPE+
Sbjct: 193 CPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELFPEKHAYDPPEE 252
Query: 181 LF 182
+F
Sbjct: 253 IF 254
>gi|326512702|dbj|BAK03258.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 251
Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 128/182 (70%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+ KE+L + LKR + + FIK HV+RLLK+D ++VL E +RQ++V L +K++ +
Sbjct: 67 IGKEALFAIQGLKRFKGDEEKLREFIKRHVARLLKADKLAVLGELERQEEVDLSVKMFRI 126
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
++KE WY+PD++ Y+D+++ LA+ KK+ EA +W ++K E + D T+ ++IR F G
Sbjct: 127 IQKEDWYKPDVYMYKDLIISLAKCKKMDEAMDIWGNMKEENLFPDSQTYAEVIRGFLRYG 186
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
PS+AM IY +M+ SP P LPFRV+LKGL+P+P R +VK DF ELFP+ +YDPP+D
Sbjct: 187 SPSDAMNIYEDMKRSPDPPEELPFRVLLKGLLPHPLLRNRVKQDFEELFPERHIYDPPDD 246
Query: 181 LF 182
+F
Sbjct: 247 IF 248
>gi|225434377|ref|XP_002276778.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46870
[Vitis vinifera]
gi|297745785|emb|CBI15841.3| unnamed protein product [Vitis vinifera]
Length = 252
Score = 179 bits (454), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 130/182 (71%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+ KE+L V LKR + + +FIKSHV RLLK D+++VL E +RQ++V L ++++ V
Sbjct: 68 IGKEALFVILGLKRFKDDEEKLRKFIKSHVLRLLKMDMIAVLTELERQEEVTLAVEVFRV 127
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
+K+ WY+PD++ Y+D+++ LA+ KK+ A Q+WE +++E++ D T+ ++IR F G
Sbjct: 128 FQKQDWYKPDVYLYKDLIIALAKCKKMDNAMQLWESMRKEDLFPDYQTYTEVIRGFLRHG 187
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
P++AM IY +M+ SP P LPFR++LKGL+P+P R +VK DF E+FPD VYDPPE+
Sbjct: 188 SPADAMNIYEDMKKSPDPPEELPFRILLKGLLPHPLLRNRVKQDFEEIFPDRHVYDPPEE 247
Query: 181 LF 182
+F
Sbjct: 248 IF 249
>gi|115472667|ref|NP_001059932.1| Os07g0549200 [Oryza sativa Japonica Group]
gi|28564798|dbj|BAC57728.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113611468|dbj|BAF21846.1| Os07g0549200 [Oryza sativa Japonica Group]
gi|215766634|dbj|BAG98696.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218199812|gb|EEC82239.1| hypothetical protein OsI_26409 [Oryza sativa Indica Group]
Length = 262
Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 127/182 (69%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+ KE+L + LKR + R F++ +V+RLLK+D ++VL E +RQ++V L +K++ +
Sbjct: 78 IGKEALFAIQGLKRFKGDEERLGEFVRRYVARLLKADKLAVLGELERQEEVDLAVKMFRI 137
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
++KE WY+PD+F Y+D+++ LA+ KK+ EA +W ++ E + D T+ ++IR F G
Sbjct: 138 IQKEDWYKPDVFMYKDLIVALAKCKKMDEAMVIWGNMTDENLFPDAQTYAEVIRGFLRYG 197
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
PS+AM IY EM+ SP P LPFRV+LKGL+P+P R +VK DF ELFP+ +YDPPE+
Sbjct: 198 SPSDAMNIYEEMKKSPDPPEELPFRVLLKGLLPHPLLRNRVKQDFEELFPERHIYDPPEE 257
Query: 181 LF 182
+F
Sbjct: 258 IF 259
>gi|224106373|ref|XP_002314145.1| predicted protein [Populus trichocarpa]
gi|222850553|gb|EEE88100.1| predicted protein [Populus trichocarpa]
Length = 257
Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/183 (44%), Positives = 131/183 (71%), Gaps = 1/183 (0%)
Query: 1 MSKESLMVAKELKRLQSHP-VRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYD 59
+ KE+L V LKR ++ + DRFIK+HV RLLK D+++VL+E +RQ++V L +K++
Sbjct: 72 IGKEALFVILGLKRFKNDDDEKLDRFIKTHVFRLLKLDMIAVLSELERQEEVSLAVKIFR 131
Query: 60 VVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119
V++K+ WY+PD++ Y+D++M L + K+ EA ++WED++ E++ D + + IR +
Sbjct: 132 VIQKQDWYKPDVYLYKDLIMALLKTGKMEEAMKLWEDMRNEDLFPDSQMYTEAIRGYLRD 191
Query: 120 GLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPE 179
G P++AM IY +M+ SP P LPFR++LKGL+P+P R +VK D+ ELFP+ VYDPPE
Sbjct: 192 GSPADAMNIYEDMKKSPDPPEELPFRILLKGLLPHPLLRNRVKQDYEELFPEKHVYDPPE 251
Query: 180 DLF 182
++F
Sbjct: 252 EIF 254
>gi|255552422|ref|XP_002517255.1| conserved hypothetical protein [Ricinus communis]
gi|223543626|gb|EEF45155.1| conserved hypothetical protein [Ricinus communis]
Length = 258
Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 126/182 (69%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+ KE+L V LKR + + D+FIK+HV RLLK D+++VL E +RQ++V L K++ +
Sbjct: 74 IGKEALFVILGLKRFKDEEEKLDKFIKTHVLRLLKMDMIAVLTELERQEEVSLATKVFQI 133
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
++K+ WY PD++ Y+D+++ L R+ K+ +A ++WE ++ E + D + ++IR F G
Sbjct: 134 IQKQDWYNPDVYLYKDLIIALTRSGKMDQAMKLWEAMRSENLFPDSQMYTELIRGFLRDG 193
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
P +AM IY +M+ SP P LPFR++LKGL+P+P R +VK D+ ELFP+ VYDPPE+
Sbjct: 194 SPGDAMNIYEDMKKSPDPPEELPFRILLKGLLPHPLLRNRVKQDYEELFPEKHVYDPPEE 253
Query: 181 LF 182
+F
Sbjct: 254 IF 255
>gi|223943649|gb|ACN25908.1| unknown [Zea mays]
gi|414879225|tpg|DAA56356.1| TPA: hypothetical protein ZEAMMB73_432076 [Zea mays]
gi|414879226|tpg|DAA56357.1| TPA: hypothetical protein ZEAMMB73_432076 [Zea mays]
gi|414879227|tpg|DAA56358.1| TPA: hypothetical protein ZEAMMB73_432076 [Zea mays]
Length = 120
Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/119 (70%), Positives = 101/119 (84%), Gaps = 1/119 (0%)
Query: 71 MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYN 130
M+FYRDML MLARNKK+ E +QVW DLK E+VLFDQHT+GDI+RAF D+ L AM IY+
Sbjct: 1 MYFYRDMLYMLARNKKINETRQVWADLKSEDVLFDQHTYGDIVRAFCDADLIDLAMEIYD 60
Query: 131 EMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPEDLFE-DQEWR 188
+MRSSP P+SLPFRVILKGL+PYPE REK+K DFLELFPDMIVYDPP+ L + D+E++
Sbjct: 61 DMRSSPDPPLSLPFRVILKGLVPYPELREKIKQDFLELFPDMIVYDPPDTLSDIDEEFK 119
>gi|226494319|ref|NP_001143431.1| uncharacterized protein LOC100276080 [Zea mays]
gi|195620394|gb|ACG32027.1| hypothetical protein [Zea mays]
Length = 254
Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 127/182 (69%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+ KESL + LKR + + F++ +V+RLLK+D ++VL E +RQ++V L +K++ +
Sbjct: 70 IGKESLFAIQGLKRFKGDEEKLADFVRRYVARLLKADKLAVLGELERQEEVDLAVKMFRI 129
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
++KE WY+PD++ Y+D+++ LA+ KK+ EA +W +++ E + D T+ ++IR F G
Sbjct: 130 IQKEDWYKPDIYMYKDLIIALAKCKKMEEAMVIWGNMRDENLFPDSQTYAEVIRGFLRYG 189
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
PS+AM IY +M+ SP P LPFRV+LKGL+P+P R +VK DF E FP+ +YDPPE+
Sbjct: 190 SPSDAMNIYEDMKKSPDPPEELPFRVLLKGLLPHPLLRNRVKQDFEEFFPERHIYDPPEE 249
Query: 181 LF 182
+F
Sbjct: 250 IF 251
>gi|242050490|ref|XP_002462989.1| hypothetical protein SORBIDRAFT_02g035860 [Sorghum bicolor]
gi|241926366|gb|EER99510.1| hypothetical protein SORBIDRAFT_02g035860 [Sorghum bicolor]
Length = 258
Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 128/182 (70%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+ KE+L + LKR + + F++ +V+RLLK+D ++VL E +RQ++V L +K++ +
Sbjct: 74 IGKEALFAIQGLKRFKGDEEKLADFVRRYVARLLKADKLAVLGELERQEEVDLAVKMFRI 133
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
++KE WY+PD++ Y+D+++ LA+ KK+ EA +W +++ E + D T+ ++IR F G
Sbjct: 134 IQKEDWYKPDIYMYKDVIIALAKCKKMEEAMVIWGNMRDENLFPDSQTYAEVIRGFLRYG 193
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
PS+AM IY +M+ SP P LPFRV+LKGL+P+P R +VK DF ELFP+ +YDPPE+
Sbjct: 194 SPSDAMNIYEDMKKSPDPPEELPFRVLLKGLLPHPLLRNRVKQDFEELFPERHIYDPPEE 253
Query: 181 LF 182
+F
Sbjct: 254 IF 255
>gi|414590513|tpg|DAA41084.1| TPA: hypothetical protein ZEAMMB73_430161 [Zea mays]
Length = 254
Score = 172 bits (435), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 127/182 (69%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+ KE+L + LKR + + F++ +V+RLLK+D ++VL E +RQ++V L +K++ +
Sbjct: 70 IGKEALFAIQGLKRFKGDEEKLADFVRRYVARLLKADKLAVLGELERQEEVDLAVKMFRI 129
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
++KE WY+PD++ Y+D+++ LA+ K + EA +W +++ E + D T+ ++IR F G
Sbjct: 130 IQKEDWYKPDIYMYKDLIIALAKCKNMEEAMVIWGNMRDENLFPDSQTYAEVIRGFLRYG 189
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
PS+AM IY +M+ SP P LPFRV+LKGL+P+P R +VK DF E+FP+ +YDPPE+
Sbjct: 190 SPSDAMNIYEDMKKSPDPPEELPFRVLLKGLLPHPLLRNRVKQDFEEMFPERHIYDPPEE 249
Query: 181 LF 182
+F
Sbjct: 250 IF 251
>gi|125600640|gb|EAZ40216.1| hypothetical protein OsJ_24661 [Oryza sativa Japonica Group]
Length = 256
Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 80/182 (43%), Positives = 123/182 (67%), Gaps = 6/182 (3%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+ KE+L + LKR + R F++ +V+RLLK+D ++VL E +RQ+++F +
Sbjct: 78 IGKEALFAIQGLKRFKGDEERLGEFVRRYVARLLKADKLAVLGELERQEEMF------RI 131
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
++KE WY+PD+F Y+D+++ LA+ KK+ EA +W ++ E + D T+ ++IR F G
Sbjct: 132 IQKEDWYKPDVFMYKDLIVALAKCKKMDEAMVIWGNMTDENLFPDAQTYAEVIRGFLRYG 191
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
PS+AM IY EM+ SP P LPFRV+LKGL+P+P R +VK DF ELFP+ +YDPPE+
Sbjct: 192 SPSDAMNIYEEMKKSPDPPEELPFRVLLKGLLPHPLLRNRVKQDFEELFPERHIYDPPEE 251
Query: 181 LF 182
+F
Sbjct: 252 IF 253
>gi|357462173|ref|XP_003601368.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490416|gb|AES71619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 144
Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/100 (76%), Positives = 87/100 (87%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+ KE L++ KELKRLQ+ PVR DRF++S+VSRLLKSDLVSVL EF QD VFL MKLYD+
Sbjct: 40 LGKEGLIITKELKRLQTDPVRLDRFVRSNVSRLLKSDLVSVLFEFHGQDNVFLSMKLYDI 99
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100
VRKEIWYRPDMFFYRDMLMMLARNK+V E K+VW+DLK E
Sbjct: 100 VRKEIWYRPDMFFYRDMLMMLARNKRVDETKRVWDDLKGE 139
>gi|351727605|ref|NP_001238702.1| uncharacterized protein LOC100306428 [Glycine max]
gi|255628511|gb|ACU14600.1| unknown [Glycine max]
Length = 150
Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 107/146 (73%)
Query: 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWED 96
D+++VL E +RQ+QV L + ++ V++K+ WY+PD + Y+D+++ LAR KK+ E Q+WE
Sbjct: 2 DMIAVLTELERQEQVSLALMMFKVMQKQDWYKPDAYLYKDLIIALARAKKMDEVLQLWES 61
Query: 97 LKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156
++ E + D T+ ++IR F + G P++AM IY +M++SP P LPFR++LKGL+P+P
Sbjct: 62 MREENLFPDSQTYTEVIRGFLNHGSPADAMNIYEDMKNSPDPPEELPFRILLKGLLPHPL 121
Query: 157 FREKVKDDFLELFPDMIVYDPPEDLF 182
R KVK DF E+FPD +YDPP+++F
Sbjct: 122 LRNKVKQDFEEIFPDSSIYDPPQEIF 147
>gi|224286190|gb|ACN40805.1| unknown [Picea sitchensis]
Length = 274
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 104/186 (55%), Gaps = 8/186 (4%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+S E++ + L+R + P R ++ + + RLLK DL++VL E QRQDQ L ++++
Sbjct: 87 LSTEAIQAVQALRRAKGDPQRLEKAFATKIPRLLKKDLLAVLQELQRQDQCDLALQVFKA 146
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
VRKE+WYRP++ + DM+MML RNK++ E + V +L++E + D +II AF G
Sbjct: 147 VRKEMWYRPNLSLHADMIMMLGRNKRIEEVEAVLLELQKEGLRPDTRVCTEIIGAFIHVG 206
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE--FREKVKDDFLELFPDMIVYDPP 178
+ AM + M+ + P F V+++GL E V++ ++ D P
Sbjct: 207 MVQNAMETFELMKQTDCHPDKSTFTVLIQGLQRLGEIDLATAVREQSVQYL------DEP 260
Query: 179 EDLFED 184
++FED
Sbjct: 261 LEIFED 266
>gi|296084249|emb|CBI24637.3| unnamed protein product [Vitis vinifera]
Length = 242
Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 94/151 (62%), Gaps = 1/151 (0%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+S E++ V + LK L ++ + S VSRLLKSDL+ LAE QRQ ++ L +K+++
Sbjct: 50 LSTEAIQVVQSLK-LAKSSIKLEEVFSSRVSRLLKSDLLDTLAELQRQGELDLTLKVFEF 108
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
+RKE+WY+PD+ Y DM+M+L + K + A+ ++ +LK+E + D + ++I A+ G
Sbjct: 109 IRKEVWYKPDLSLYSDMIMILGKKKLIEMAEGLFSELKKEGLEPDTRVYTEMIGAYLQVG 168
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+ +AM +Y M++S P L ++++ L
Sbjct: 169 MTEKAMEMYGLMKASGCAPDKLTLTILIRNL 199
>gi|225434034|ref|XP_002272799.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Vitis vinifera]
Length = 237
Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 94/151 (62%), Gaps = 1/151 (0%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+S E++ V + LK L ++ + S VSRLLKSDL+ LAE QRQ ++ L +K+++
Sbjct: 45 LSTEAIQVVQSLK-LAKSSIKLEEVFSSRVSRLLKSDLLDTLAELQRQGELDLTLKVFEF 103
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
+RKE+WY+PD+ Y DM+M+L + K + A+ ++ +LK+E + D + ++I A+ G
Sbjct: 104 IRKEVWYKPDLSLYSDMIMILGKKKLIEMAEGLFSELKKEGLEPDTRVYTEMIGAYLQVG 163
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+ +AM +Y M++S P L ++++ L
Sbjct: 164 MTEKAMEMYGLMKASGCAPDKLTLTILIRNL 194
>gi|147788707|emb|CAN65295.1| hypothetical protein VITISV_017782 [Vitis vinifera]
Length = 303
Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 94/151 (62%), Gaps = 1/151 (0%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+S E++ V + LK L ++ + S VSRLLKSDL+ LAE QRQ ++ L +K+++
Sbjct: 45 LSTEAIQVVQSLK-LAKSSIKLEEVFSSRVSRLLKSDLLDTLAELQRQGELDLTLKVFEF 103
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
+RKE+WY+PD+ Y DM+M+L + K + A+ ++ +LK+E + D + ++I A+ G
Sbjct: 104 IRKEVWYKPDLSLYSDMIMILGKKKLIEMAEGLFSELKKEGLEPDTRVYTEMIGAYLQVG 163
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+ +AM +Y M++S P L ++++ L
Sbjct: 164 MTEKAMEMYGLMKASGCAPDKLTLTILIRNL 194
>gi|255578900|ref|XP_002530303.1| ATP binding protein, putative [Ricinus communis]
gi|223530159|gb|EEF32070.1| ATP binding protein, putative [Ricinus communis]
Length = 244
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 104/192 (54%), Gaps = 8/192 (4%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+S E++ + LK +S R + + +SRLLK+DL+ VL Q+Q+++ L +K+++
Sbjct: 48 VSTEAIQAIQSLKLAKSSNPRLHQVFNTKLSRLLKTDLLDVLEILQKQNELDLALKVFEF 107
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
V+KEIWY+PD+ Y M+ ML +NK A+ + L++E + D F ++I A+ G
Sbjct: 108 VQKEIWYKPDLTLYYGMIEMLGKNKMTEMAEGYFSKLEKEGLKPDTRAFNEMIGAYLKVG 167
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI--VYDPP 178
+AM +Y M+ S P L F ++++ L E ++D +++ D P
Sbjct: 168 TTEKAMEMYGRMKESGCVPDKLTFVILIRNL------EEAGRNDLVDIIKKECGDYMDYP 221
Query: 179 EDLFEDQEWRRE 190
E E+ E +++
Sbjct: 222 EKFLEEVERKKD 233
>gi|224092960|ref|XP_002309772.1| predicted protein [Populus trichocarpa]
gi|222852675|gb|EEE90222.1| predicted protein [Populus trichocarpa]
Length = 241
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 93/152 (61%), Gaps = 1/152 (0%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+S E++ V + LK +S R + S +SRLLK+DL+ LA Q Q+++ L +K+++
Sbjct: 46 LSTEAIQVIQSLKLARSSTPRLEEVFNSKLSRLLKTDLLDTLAVLQNQNELDLALKVFEF 105
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF-DQHTFGDIIRAFSDS 119
VRKE+WY+PD+ Y M+ M+ RNK V A++ + L++EE L D F ++I A+
Sbjct: 106 VRKEVWYKPDILLYHAMIQMVGRNKMVEMAEEFFGKLEKEEGLKPDTRAFTEMIGAYLQV 165
Query: 120 GLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
G+ +AM Y M++S P L FR++++ L
Sbjct: 166 GMIDKAMETYERMKASGCDPDKLTFRILIRNL 197
>gi|449469204|ref|XP_004152311.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
gi|449484870|ref|XP_004157003.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
Length = 245
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 99/188 (52%), Gaps = 8/188 (4%)
Query: 2 SKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVV 61
S E++ + LK L + + I + + RLLK+DL L+E QRQ+++ L ++++ +
Sbjct: 57 SNEAIQAVQSLK-LAKSTSKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFM 115
Query: 62 RKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGL 121
+ E W+ PD+ Y M+M++ +NK + A++V+ L+++ + D F +++ A+ +
Sbjct: 116 QNEEWFEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDM 175
Query: 122 PSEAMFIYNEMRSSPATPISLPFRVILKGLIPY-PEFREKVKDDFLELFPDMIVYDPPED 180
A+ Y M +S TP L F++++K L + EF VK D E D P+
Sbjct: 176 IERAVETYRLMIASGCTPDELTFKILIKNLEKFREEFAVVVKKDCNEYL------DNPQK 229
Query: 181 LFEDQEWR 188
F D +
Sbjct: 230 FFNDNGQK 237
>gi|297744458|emb|CBI37720.3| unnamed protein product [Vitis vinifera]
Length = 208
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 81/152 (53%), Gaps = 1/152 (0%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+S E++ + LKR + +R +S V RLLK D+++VL + Q++ L +K++D
Sbjct: 17 LSIEAIQAVQALKRAKRDESSLERVFESKVRRLLKLDMIAVLKQLLNQNECLLALKVFDD 76
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVL-FDQHTFGDIIRAFSDS 119
VRKE WY+P + Y +M+ +L N + + LK+E L + F ++R D
Sbjct: 77 VRKEYWYKPQVSLYAEMIRVLGSNGLFEQVHLLLSYLKKETGLELETEGFNALLRTLIDF 136
Query: 120 GLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+ AM + M++S P FR+++KGL
Sbjct: 137 DMTGPAMECFQLMKTSGCEPNKSSFRILIKGL 168
>gi|225428340|ref|XP_002279994.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46870
[Vitis vinifera]
Length = 246
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 81/152 (53%), Gaps = 1/152 (0%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+S E++ + LKR + +R +S V RLLK D+++VL + Q++ L +K++D
Sbjct: 55 LSIEAIQAVQALKRAKRDESSLERVFESKVRRLLKLDMIAVLKQLLNQNECLLALKVFDD 114
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVL-FDQHTFGDIIRAFSDS 119
VRKE WY+P + Y +M+ +L N + + LK+E L + F ++R D
Sbjct: 115 VRKEYWYKPQVSLYAEMIRVLGSNGLFEQVHLLLSYLKKETGLELETEGFNALLRTLIDF 174
Query: 120 GLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+ AM + M++S P FR+++KGL
Sbjct: 175 DMTGPAMECFQLMKTSGCEPNKSSFRILIKGL 206
>gi|168046423|ref|XP_001775673.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672946|gb|EDQ59476.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 392
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 93/162 (57%), Gaps = 1/162 (0%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+SKE+L V ELKR + + +++ SRLLK DL+ VL E +RQ + L +++D+
Sbjct: 206 VSKEALQVVFELKRCKGDKQKERVVLQNSASRLLKMDLLMVLEELRRQQECSLAKQVFDM 265
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
VRKE WY+PD+F YR+M+ +NK + + ++ ++ ++ E + + +++ A+ +
Sbjct: 266 VRKEEWYKPDVFLYREMMDTFGKNKLMEDVEEFYQQMQEEGLAPNAMILTEMMGAYIRNN 325
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
+ A I+ E+ P + + ++ +GL +F EK+K
Sbjct: 326 NITRAYEIFEEIEQGGHQPEYVMYEILCRGLKKAGDF-EKLK 366
>gi|255032627|gb|ACT99064.1| unknown [Lactuca sativa]
gi|255032629|gb|ACT99065.1| unknown [Lactuca sativa]
gi|255032633|gb|ACT99067.1| unknown [Lactuca sativa]
gi|255032635|gb|ACT99068.1| unknown [Lactuca sativa]
gi|255032643|gb|ACT99072.1| unknown [Lactuca sativa]
gi|255032645|gb|ACT99073.1| unknown [Lactuca sativa]
gi|255032647|gb|ACT99074.1| unknown [Lactuca sativa]
gi|255032653|gb|ACT99077.1| unknown [Lactuca sativa]
gi|255032655|gb|ACT99078.1| unknown [Lactuca sativa]
gi|255032657|gb|ACT99079.1| unknown [Lactuca sativa]
gi|255032659|gb|ACT99080.1| unknown [Lactuca sativa]
gi|255032661|gb|ACT99081.1| unknown [Lactuca sativa]
gi|255032671|gb|ACT99086.1| unknown [Lactuca sativa]
gi|255032677|gb|ACT99089.1| unknown [Lactuca sativa]
gi|255032679|gb|ACT99090.1| unknown [Lactuca sativa]
gi|255032685|gb|ACT99093.1| unknown [Lactuca sativa]
gi|255032687|gb|ACT99094.1| unknown [Lactuca sativa]
gi|255032697|gb|ACT99099.1| unknown [Lactuca sativa]
gi|255032709|gb|ACT99105.1| unknown [Lactuca sativa]
gi|255032737|gb|ACT99119.1| unknown [Lactuca sativa]
gi|255032741|gb|ACT99121.1| unknown [Lactuca sativa]
Length = 100
Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/52 (78%), Positives = 45/52 (86%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVF 52
+ KE L++AKELKRLQS P+R D FIKSHVSRLLKSDLVSVL EFQRQD VF
Sbjct: 49 LGKEGLIIAKELKRLQSSPLRLDHFIKSHVSRLLKSDLVSVLFEFQRQDLVF 100
>gi|255032605|gb|ACT99053.1| unknown [Lactuca sativa]
gi|255032607|gb|ACT99054.1| unknown [Lactuca sativa]
gi|255032609|gb|ACT99055.1| unknown [Lactuca sativa]
gi|255032611|gb|ACT99056.1| unknown [Lactuca sativa]
gi|255032613|gb|ACT99057.1| unknown [Lactuca sativa]
gi|255032615|gb|ACT99058.1| unknown [Lactuca sativa]
gi|255032617|gb|ACT99059.1| unknown [Lactuca sativa]
gi|255032619|gb|ACT99060.1| unknown [Lactuca sativa]
gi|255032621|gb|ACT99061.1| unknown [Lactuca sativa]
gi|255032623|gb|ACT99062.1| unknown [Lactuca sativa]
gi|255032625|gb|ACT99063.1| unknown [Lactuca sativa]
gi|255032631|gb|ACT99066.1| unknown [Lactuca sativa]
gi|255032637|gb|ACT99069.1| unknown [Lactuca sativa]
gi|255032639|gb|ACT99070.1| unknown [Lactuca sativa]
gi|255032641|gb|ACT99071.1| unknown [Lactuca sativa]
gi|255032649|gb|ACT99075.1| unknown [Lactuca sativa]
gi|255032651|gb|ACT99076.1| unknown [Lactuca sativa]
gi|255032663|gb|ACT99082.1| unknown [Lactuca sativa]
gi|255032665|gb|ACT99083.1| unknown [Lactuca sativa]
gi|255032667|gb|ACT99084.1| unknown [Lactuca sativa]
gi|255032669|gb|ACT99085.1| unknown [Lactuca sativa]
gi|255032673|gb|ACT99087.1| unknown [Lactuca sativa]
gi|255032675|gb|ACT99088.1| unknown [Lactuca sativa]
gi|255032681|gb|ACT99091.1| unknown [Lactuca sativa]
gi|255032683|gb|ACT99092.1| unknown [Lactuca sativa]
gi|255032689|gb|ACT99095.1| unknown [Lactuca sativa]
gi|255032691|gb|ACT99096.1| unknown [Lactuca sativa]
gi|255032693|gb|ACT99097.1| unknown [Lactuca serriola]
gi|255032695|gb|ACT99098.1| unknown [Lactuca sativa]
gi|255032699|gb|ACT99100.1| unknown [Lactuca sativa]
gi|255032701|gb|ACT99101.1| unknown [Lactuca sativa]
gi|255032703|gb|ACT99102.1| unknown [Lactuca sativa]
gi|255032705|gb|ACT99103.1| unknown [Lactuca sativa]
gi|255032707|gb|ACT99104.1| unknown [Lactuca sativa]
gi|255032711|gb|ACT99106.1| unknown [Lactuca sativa]
gi|255032713|gb|ACT99107.1| unknown [Lactuca sativa]
gi|255032715|gb|ACT99108.1| unknown [Lactuca sativa]
gi|255032717|gb|ACT99109.1| unknown [Lactuca sativa]
gi|255032719|gb|ACT99110.1| unknown [Lactuca sativa]
gi|255032721|gb|ACT99111.1| unknown [Lactuca sativa]
gi|255032723|gb|ACT99112.1| unknown [Lactuca sativa]
gi|255032725|gb|ACT99113.1| unknown [Lactuca sativa]
gi|255032727|gb|ACT99114.1| unknown [Lactuca sativa]
gi|255032729|gb|ACT99115.1| unknown [Lactuca sativa]
gi|255032731|gb|ACT99116.1| unknown [Lactuca sativa]
gi|255032733|gb|ACT99117.1| unknown [Lactuca sativa]
gi|255032735|gb|ACT99118.1| unknown [Lactuca serriola]
gi|255032739|gb|ACT99120.1| unknown [Lactuca sativa]
gi|255032743|gb|ACT99122.1| unknown [Lactuca sativa]
Length = 100
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/52 (78%), Positives = 45/52 (86%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVF 52
+ KE L++AKELKRLQS P+R D FIKSHVSRLLKSDLVSVL EFQRQD VF
Sbjct: 49 LGKEGLIIAKELKRLQSSPLRLDHFIKSHVSRLLKSDLVSVLFEFQRQDLVF 100
>gi|449454430|ref|XP_004144958.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
gi|449473007|ref|XP_004153757.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
gi|449517150|ref|XP_004165609.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
Length = 249
Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 80/152 (52%), Gaps = 1/152 (0%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+S E++ + LKR + + DR S + RLLK D+++VL E RQ++ L +K+++
Sbjct: 58 LSIEAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFED 117
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ-HTFGDIIRAFSDS 119
VRKE WY+P + Y D++ +LA N + + +K E L + F +++A
Sbjct: 118 VRKEHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAEADLAPEIDGFNALLKALVSH 177
Query: 120 GLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
L AM Y M+ P FR+++KGL
Sbjct: 178 NLGELAMESYYLMKDVGCEPDKASFRIVIKGL 209
>gi|357164141|ref|XP_003579962.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Brachypodium distachyon]
Length = 233
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 2/153 (1%)
Query: 1 MSKESLMVAKELKR--LQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLY 58
+S E++ + LKR L P + + RLLK+D+V+V E Q + L +K++
Sbjct: 46 LSTEAIQAVQSLKRATLSGTPAAGAVATDTKLRRLLKADMVAVFRELAAQGEALLALKVF 105
Query: 59 DVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118
+ +RKE WY+P +F+Y D++ +LA + E + LKRE++ D F +++ D
Sbjct: 106 EEIRKEHWYKPRLFWYVDLITVLASKGLLSEVSKACSYLKREQLEPDTDGFNLLLKTLLD 165
Query: 119 SGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+ M + M+ + P + +R ++ GL
Sbjct: 166 AEFTQLTMDCFRLMKLWNSEPDRITYRTLINGL 198
>gi|255546690|ref|XP_002514404.1| conserved hypothetical protein [Ricinus communis]
gi|223546501|gb|EEF48000.1| conserved hypothetical protein [Ricinus communis]
Length = 248
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 76/155 (49%), Gaps = 4/155 (2%)
Query: 1 MSKESLMVAKELKRLQ--SHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLY 58
+S ES+ + LKR S D +S SRLLK D++SVL E RQ+ L +K++
Sbjct: 60 LSIESIQAVQSLKRAYYFSTNSNLDSVFRSKFSRLLKLDMLSVLRELLRQNHCLLALKVF 119
Query: 59 DVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHT--FGDIIRAF 116
+RKE WY+P + Y DM+ +A N + + + LK E L + T F +
Sbjct: 120 KDIRKEYWYKPQVSLYDDMIKAMASNGYFEQVELLCIYLKTETNLIEPETDAFNALFTTL 179
Query: 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
L AM Y M++ P L FR+++ GL
Sbjct: 180 ITFNLSGFAMEFYGLMKAVKCEPDRLTFRILINGL 214
>gi|414887041|tpg|DAA63055.1| TPA: hypothetical protein ZEAMMB73_179106 [Zea mays]
Length = 74
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 99 REEVLF-DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEF 157
R+E+LF D + + R F +G PS+AM IY M+ SP P LPFRV+LKGL+P+P
Sbjct: 2 RDEILFPDSQNYAKVTRRFLGNGSPSDAMSIYEGMKKSPDPPQELPFRVLLKGLLPHPLL 61
Query: 158 REKVKDDFLELFP 170
R +VK DF ELFP
Sbjct: 62 RNRVKQDFEELFP 74
>gi|358248622|ref|NP_001240168.1| uncharacterized protein LOC100781412 [Glycine max]
gi|255642193|gb|ACU21361.1| unknown [Glycine max]
Length = 246
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 95/172 (55%), Gaps = 9/172 (5%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+SKES+ V LK L P D + + +SRLLK D +++L E QRQ+Q+ L +K++
Sbjct: 54 LSKESIEVIHALK-LARSP---DHVLNAKLSRLLKPDALNLLDELQRQNQLHLSLKVFHF 109
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
+R+E+ + + Y DM+++L RNK++ A++++ + + + D ++I A+ G
Sbjct: 110 IREELGHDTLLQLYADMILLLGRNKRIDMAEELFSEALEKGLKPDTRLCSEMIGAYLQLG 169
Query: 121 LPSEAMFIYNEMR---SSPATPISLPFRVILKGLIPYP--EFREKVKDDFLE 167
+ +AM IY M+ + ++P F ++++ L E E +K D L
Sbjct: 170 MADKAMQIYASMKEDWACSSSPDKFTFTILIRYLQKNGQHELAETLKQDCLH 221
>gi|302797539|ref|XP_002980530.1| hypothetical protein SELMODRAFT_420139 [Selaginella moellendorffii]
gi|300151536|gb|EFJ18181.1| hypothetical protein SELMODRAFT_420139 [Selaginella moellendorffii]
Length = 334
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 93/170 (54%), Gaps = 3/170 (1%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+S+E+ +V +L R +S P R IK+ VSRLLK DL L E QRQ + L +K++
Sbjct: 98 LSRETQLVVSDLVRHKSEPERVSSIIKTKVSRLLKLDLFGALRELQRQLEGELALKVFYE 157
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ-HTFGDIIRAFSDS 119
++KE WY PD+ Y ML LA+ +A++++E+++ + L + +T+ + +R+ S
Sbjct: 158 IKKEEWYTPDILQYAKMLGCLAKAGLTSQAEKLFEEMQSVDGLEPELNTYTEYLRSLIFS 217
Query: 120 GLPSEAMFIYNEMRSSPATPISLPFRVILKGL--IPYPEFREKVKDDFLE 167
+ EM+ P + ++V+ GL + P+ E +++ LE
Sbjct: 218 RQVDKVHATVREMKEQGCPPDLVVYKVLWVGLNAVHKPKDAEFYRNELLE 267
>gi|302790069|ref|XP_002976802.1| hypothetical protein SELMODRAFT_416782 [Selaginella moellendorffii]
gi|300155280|gb|EFJ21912.1| hypothetical protein SELMODRAFT_416782 [Selaginella moellendorffii]
Length = 319
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 93/170 (54%), Gaps = 3/170 (1%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+S+E+ +V +L R +S P R IK+ VSRLLK DL L E QRQ + L +K++
Sbjct: 79 LSRETQLVVSDLVRHKSEPERVSSIIKTKVSRLLKLDLFGALRELQRQLEGELALKVFYE 138
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ-HTFGDIIRAFSDS 119
++KE WY PD+ Y ML LA+ +A++++E+++ + L + +T+ + +R+ S
Sbjct: 139 IKKEEWYTPDILQYAKMLGCLAKAGLTSQAEKLFEEMQSVDGLEPELNTYTEYLRSLIFS 198
Query: 120 GLPSEAMFIYNEMRSSPATPISLPFRVILKGL--IPYPEFREKVKDDFLE 167
+ EM+ P + ++V+ GL + P+ E +++ LE
Sbjct: 199 RQVDKVHATVREMKEQGCPPDLVVYKVLWVGLNAVHKPKDAEFYRNELLE 248
>gi|388510802|gb|AFK43467.1| unknown [Lotus japonicus]
Length = 259
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 87/151 (57%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+SKE + V LK +S + + + ++RLL +D + +L E QRQ+++ L +K+++
Sbjct: 66 ISKEGIQVIHALKLAKSSEQKLYQVLNEKLTRLLNADALDLLGELQRQNELHLSLKVFNF 125
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
+R+E + + Y DM+++L RNK V EA++++ + + + D F ++I + G
Sbjct: 126 LREEPGFDALLPLYSDMILLLGRNKMVGEAEELFSQVVEKGLKPDTRMFTEMIGVYLQGG 185
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+AM +Y M++S +P L F ++++ L
Sbjct: 186 NTEKAMELYRSMKASGCSPDKLTFTILIRSL 216
>gi|414586768|tpg|DAA37339.1| TPA: hypothetical protein ZEAMMB73_755953 [Zea mays]
Length = 209
Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 79/154 (51%), Gaps = 3/154 (1%)
Query: 1 MSKESLMVAKELKRLQ---SHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKL 57
+S E++ + LKR + ++ + RLLK+D+V+V E Q + L +++
Sbjct: 17 LSTEAIQAVQSLKRAALRGAPAASAAAVVEPKLRRLLKADMVAVFRELAAQGEALLALQV 76
Query: 58 YDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117
++ +RKE WY+P + +Y D++ +LA E + LKRE++ D F +++A
Sbjct: 77 FEEIRKEHWYKPRLLWYVDLVTVLASKGLRTEVDRACSYLKREQLEPDTEGFNLLLKALL 136
Query: 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
DSG + + M+ + P + + ++KGL
Sbjct: 137 DSGFTQLTLDCFRLMKLWDSDPDRITYTTLIKGL 170
>gi|359482912|ref|XP_003632859.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Vitis vinifera]
gi|297743240|emb|CBI36107.3| unnamed protein product [Vitis vinifera]
Length = 230
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 79/154 (51%), Gaps = 3/154 (1%)
Query: 1 MSKESLMVAKELKRL-QSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYD 59
+S E++ + LKR + P + D F+ +SRL+K+DL++ L E RQDQ L ++++
Sbjct: 48 LSIEAIQAIQSLKRAHRGDPTKIDDFLSKTLSRLVKADLLATLNELLRQDQCDLALRVFS 107
Query: 60 VVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE-EVLFDQHTFGDIIRAFSD 118
VR E+WY+ ++ Y D++ LAR E ++ DL+ E V D +++A
Sbjct: 108 AVRSELWYKTELSLYADLVSALARKGMKEEIDRLICDLEGEGSVRCDDKGIVRLVKAVIA 167
Query: 119 SGLPSEAMFIYNEM-RSSPATPISLPFRVILKGL 151
+ + IY M RS RV+ +GL
Sbjct: 168 AERRDSTVRIYGLMKRSGCGGGDEYVGRVLSRGL 201
>gi|326488207|dbj|BAJ89942.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 231
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 2/153 (1%)
Query: 1 MSKESLMVAKELKR--LQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLY 58
+S E++ + LKR L P + RLLK+D+V+V E Q + L +K++
Sbjct: 46 LSTEAIQAVQSLKRATLSGAPAAGAVATDPKLRRLLKADMVAVFRELAAQGEAHLALKVF 105
Query: 59 DVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118
+ +RKE WY+P +F+Y D++ +LA E + LKRE++ D F +++ D
Sbjct: 106 EEIRKEHWYKPRLFWYVDLITVLASKGLRSEVGKACSYLKREQLEPDTDGFNLLLKTLLD 165
Query: 119 SGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+ M + M+ + P + ++KGL
Sbjct: 166 AEFTQLTMDCFRLMKLWDSEPDRTTYITLVKGL 198
>gi|125548701|gb|EAY94523.1| hypothetical protein OsI_16297 [Oryza sativa Indica Group]
Length = 228
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 67/126 (53%)
Query: 32 RLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAK 91
RLLK+D+V+V E Q + L +++++ +RKE WY+P + Y D++ +LA E
Sbjct: 52 RLLKADMVAVFRELAAQGEALLALQVFEEIRKEHWYKPKLLLYVDIVTVLASKGLRSEVD 111
Query: 92 QVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+V LKRE++ D F +++A D+ M + M+ + P + +R ++KGL
Sbjct: 112 KVCSYLKREQLEPDTEGFNVLLKALLDAEFTQLTMDCFRLMKLWDSDPDRITYRTLIKGL 171
Query: 152 IPYPEF 157
E
Sbjct: 172 ESIGEM 177
>gi|115458948|ref|NP_001053074.1| Os04g0475500 [Oryza sativa Japonica Group]
gi|113564645|dbj|BAF14988.1| Os04g0475500 [Oryza sativa Japonica Group]
gi|125590727|gb|EAZ31077.1| hypothetical protein OsJ_15174 [Oryza sativa Japonica Group]
Length = 228
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 67/126 (53%)
Query: 32 RLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAK 91
RLLK+D+V+V E Q + L +++++ +RKE WY+P + Y D++ +LA E
Sbjct: 52 RLLKADMVAVFRELAAQGEALLALQVFEEIRKEHWYKPKLLLYVDIVTVLASKGLRSEVD 111
Query: 92 QVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+V LKRE++ D F +++A D+ M + M+ + P + +R ++KGL
Sbjct: 112 KVCSYLKREQLEPDTEGFNVLLKALLDAEFTQLTMDCFRLMKLWDSDPDRITYRTLIKGL 171
Query: 152 IPYPEF 157
E
Sbjct: 172 ESLGEM 177
>gi|21618227|gb|AAM67277.1| unknown [Arabidopsis thaliana]
Length = 262
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 1/131 (0%)
Query: 22 FDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMML 81
DR I S RLLK D+V+VL E RQ++ L +K+++ +RKE WY+P + Y DM+ ++
Sbjct: 91 LDRVIISKFRRLLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVM 150
Query: 82 ARNKKVVEAKQVWEDLKREEVLFDQ-HTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPI 140
A N + E ++ +K E+ L + F ++ + L M Y M+S P
Sbjct: 151 ADNSLMEEVNYLYSAMKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGYEPD 210
Query: 141 SLPFRVILKGL 151
FRV++ GL
Sbjct: 211 RASFRVLVLGL 221
>gi|38344476|emb|CAE05491.2| OSJNBa0022H21.11 [Oryza sativa Japonica Group]
Length = 257
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 67/126 (53%)
Query: 32 RLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAK 91
RLLK+D+V+V E Q + L +++++ +RKE WY+P + Y D++ +LA E
Sbjct: 81 RLLKADMVAVFRELAAQGEALLALQVFEEIRKEHWYKPKLLLYVDIVTVLASKGLRSEVD 140
Query: 92 QVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+V LKRE++ D F +++A D+ M + M+ + P + +R ++KGL
Sbjct: 141 KVCSYLKREQLEPDTEGFNVLLKALLDAEFTQLTMDCFRLMKLWDSDPDRITYRTLIKGL 200
Query: 152 IPYPEF 157
E
Sbjct: 201 ESLGEM 206
>gi|116310293|emb|CAH67311.1| OSIGBa0106G07.7 [Oryza sativa Indica Group]
Length = 259
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 67/126 (53%)
Query: 32 RLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAK 91
RLLK+D+V+V E Q + L +++++ +RKE WY+P + Y D++ +LA E
Sbjct: 83 RLLKADMVAVFRELAAQGEALLALQVFEEIRKEHWYKPKLLLYVDIVTVLASKGLRSEVD 142
Query: 92 QVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+V LKRE++ D F +++A D+ M + M+ + P + +R ++KGL
Sbjct: 143 KVCSYLKREQLEPDTEGFNVLLKALLDAEFTQLTMDCFRLMKLWDSDPDRITYRTLIKGL 202
Query: 152 IPYPEF 157
E
Sbjct: 203 ESIGEM 208
>gi|242076196|ref|XP_002448034.1| hypothetical protein SORBIDRAFT_06g019940 [Sorghum bicolor]
gi|241939217|gb|EES12362.1| hypothetical protein SORBIDRAFT_06g019940 [Sorghum bicolor]
Length = 216
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 80/154 (51%), Gaps = 3/154 (1%)
Query: 1 MSKESLMVAKELKRL--QSHP-VRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKL 57
+S E++ + LKR +S P ++ + RLLK+D+V+V E Q + L ++
Sbjct: 17 LSTEAIQAVQSLKRAARRSAPSASTAATVEPKLRRLLKTDMVAVFRELAAQGEALLAFQV 76
Query: 58 YDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117
++ +RKE WY+P + +Y D++ +LA +E + LK+E++ D F +++
Sbjct: 77 FEEIRKEHWYKPRLLWYVDLVTVLASKGLRIEVDRACSYLKKEQLEPDTEGFNLLLKELL 136
Query: 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
D+G M + M+ + P + + ++KGL
Sbjct: 137 DAGFTQLTMDCFRLMKLWDSDPDRITYTTLIKGL 170
>gi|297811021|ref|XP_002873394.1| hypothetical protein ARALYDRAFT_487743 [Arabidopsis lyrata subsp.
lyrata]
gi|297319231|gb|EFH49653.1| hypothetical protein ARALYDRAFT_487743 [Arabidopsis lyrata subsp.
lyrata]
Length = 745
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 70/130 (53%), Gaps = 1/130 (0%)
Query: 23 DRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLA 82
DR I S RLLK D+V+VL E RQ++ L +K+++ +RKE WY+P + Y DM+ ++A
Sbjct: 575 DRVIISKFRRLLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMA 634
Query: 83 RNKKVVEAKQVWEDLKREEVLF-DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPIS 141
N + E ++ +K E+ L D F ++ + L M Y M+S P
Sbjct: 635 DNSLMEEVNYLYSAMKSEKGLMADIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGYEPDR 694
Query: 142 LPFRVILKGL 151
FR+++ GL
Sbjct: 695 ASFRILVLGL 704
>gi|22531104|gb|AAM97056.1| putative protein [Arabidopsis thaliana]
gi|30023740|gb|AAP13403.1| At5g09320 [Arabidopsis thaliana]
Length = 262
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 70/130 (53%), Gaps = 1/130 (0%)
Query: 23 DRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLA 82
DR I S RLLK D+V+VL E RQ++ L +K+++ +RKE WY+P + Y DM+ ++A
Sbjct: 92 DRVIISKFRRLLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMA 151
Query: 83 RNKKVVEAKQVWEDLKREEVLFDQ-HTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPIS 141
N + E ++ +K E+ L + F ++ + L M Y M+S P
Sbjct: 152 DNSLMEEVNYLYSAMKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGYEPDR 211
Query: 142 LPFRVILKGL 151
FRV++ GL
Sbjct: 212 ASFRVLVLGL 221
>gi|15242388|ref|NP_196494.1| Vacuolar sorting protein 9 (VPS9) domain protein [Arabidopsis
thaliana]
gi|9955519|emb|CAC05458.1| putative protein [Arabidopsis thaliana]
gi|332003991|gb|AED91374.1| Vacuolar sorting protein 9 (VPS9) domain protein [Arabidopsis
thaliana]
Length = 712
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 70/130 (53%), Gaps = 1/130 (0%)
Query: 23 DRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLA 82
DR I S RLLK D+V+VL E RQ++ L +K+++ +RKE WY+P + Y DM+ ++A
Sbjct: 542 DRVIISKFRRLLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMA 601
Query: 83 RNKKVVEAKQVWEDLKREEVLFDQ-HTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPIS 141
N + E ++ +K E+ L + F ++ + L M Y M+S P
Sbjct: 602 DNSLMEEVNYLYSAMKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGYEPDR 661
Query: 142 LPFRVILKGL 151
FRV++ GL
Sbjct: 662 ASFRVLVLGL 671
>gi|255552029|ref|XP_002517059.1| conserved hypothetical protein [Ricinus communis]
gi|223543694|gb|EEF45222.1| conserved hypothetical protein [Ricinus communis]
Length = 112
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 69/153 (45%), Gaps = 52/153 (33%)
Query: 26 IKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNK 85
+++HV RLLK D+++V E + Q+++ L +++++V++K+ W F RD
Sbjct: 1 METHVLRLLKLDMIAVHTELECQEEISLAIEMFEVIQKQEWG-----FLRD--------- 46
Query: 86 KVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFR 145
G P + + IY +M+ SP LPFR
Sbjct: 47 ----------------------------------GSPGDGLNIYEDMKKSP----DLPFR 68
Query: 146 VILKGLIPYPEFREKVKDDFLELFPDMIVYDPP 178
KG P P R +VK DF ELFP+ VYD P
Sbjct: 69 TFFKGASPGPLLRNRVKQDFEELFPEKHVYDTP 101
>gi|224102763|ref|XP_002312792.1| predicted protein [Populus trichocarpa]
gi|222849200|gb|EEE86747.1| predicted protein [Populus trichocarpa]
Length = 216
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 7/166 (4%)
Query: 22 FDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMML 81
D+ +S SRLLK D+ +VL E RQ+ L +K+++ +R E WY+P + Y DM+ ++
Sbjct: 47 LDQVFRSKFSRLLKFDMTAVLRELLRQNHCLLALKVFEDIRVEHWYKPKVLLYNDMIQVM 106
Query: 82 ARNKKVVEAKQVWEDLKRE---EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS--SP 136
A N + E + ++ L+ E ++ F F ++ L M Y M+S
Sbjct: 107 ASNGFIEEVQLLFRYLESEITGDLQFKTDEFNQLLATLISFKLGGLVMECYEWMKSVVVG 166
Query: 137 ATPISLPFRVILKGLIPYPEFREK--VKDDFLELFPDMIVYDPPED 180
P F++++ GL EF V+ D + + + + ++ E+
Sbjct: 167 CEPDRSTFKLLVNGLESIGEFELSVVVRQDAYKFYGESLDFEAEEE 212
>gi|302769874|ref|XP_002968356.1| hypothetical protein SELMODRAFT_67614 [Selaginella moellendorffii]
gi|300164000|gb|EFJ30610.1| hypothetical protein SELMODRAFT_67614 [Selaginella moellendorffii]
Length = 161
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 72/129 (55%), Gaps = 6/129 (4%)
Query: 26 IKSHVSRLLKSDLVSVLAEFQRQDQVFL------CMKLYDVVRKEIWYRPDMFFYRDMLM 79
+ S V RL+K DL+++L QR D+V L C +++ RKE+WY+P + YRDML
Sbjct: 33 LASKVGRLVKLDLLALLHALQRHDEVDLAFQVSPCFLVFERARKEVWYKPSVPLYRDMLK 92
Query: 80 MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
LARN +V ++E +K+E+ F ++I F SG +A+ ++ M+ S A P
Sbjct: 93 SLARNGRVEGVYSLFETIKQEKAEPHIAMFTEVIDIFVGSGRFRDALKVFEMMKESEAPP 152
Query: 140 ISLPFRVIL 148
+R I+
Sbjct: 153 NVRTYRTII 161
>gi|302765018|ref|XP_002965930.1| hypothetical protein SELMODRAFT_67616 [Selaginella moellendorffii]
gi|300166744|gb|EFJ33350.1| hypothetical protein SELMODRAFT_67616 [Selaginella moellendorffii]
Length = 161
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 72/129 (55%), Gaps = 6/129 (4%)
Query: 26 IKSHVSRLLKSDLVSVLAEFQRQDQVFL------CMKLYDVVRKEIWYRPDMFFYRDMLM 79
+ S V RL+K DL+++L QR D+V L C +++ RKE+WY+P + YRDML
Sbjct: 33 LASKVGRLVKLDLLALLHALQRHDEVDLAFQVSPCFLVFERARKEVWYKPSVPLYRDMLK 92
Query: 80 MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
LARN +V ++E +K+E+ F ++I F SG +A+ ++ M+ S A P
Sbjct: 93 SLARNGRVEGVYSLFETIKQEKAEPHIAMFTEVIDIFVGSGRFRDALKVFEMMKDSEAPP 152
Query: 140 ISLPFRVIL 148
+R I+
Sbjct: 153 NVRTYRTII 161
>gi|302766717|ref|XP_002966779.1| hypothetical protein SELMODRAFT_407937 [Selaginella moellendorffii]
gi|300166199|gb|EFJ32806.1| hypothetical protein SELMODRAFT_407937 [Selaginella moellendorffii]
Length = 468
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 87/167 (52%), Gaps = 3/167 (1%)
Query: 2 SKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVV 61
++E++ L+ ++ P + D +++++ R+LK D++ VL ++ + + +K++ ++
Sbjct: 277 TQEAMQTVTALRHRKNDPDKVDSYLETNAPRMLKKDMLCVLTILRKHREEEIALKVFRII 336
Query: 62 RKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGL 121
KE WY P+ + YR+++++L ++ E +++ E+ ++H F ++ A D
Sbjct: 337 EKESWYEPNSYLYRELILILTNLRRFDELWTTMDEMDANEMHPNRHMFVPVMSACFDLFD 396
Query: 122 PSEAMFIYNEMRSSPATPI-SLPFRVILKGL--IPYPEFREKVKDDF 165
YN M +P + L +R ++K L EF ++V +D
Sbjct: 397 FQNLERFYNRMLKTPGLHLHHLVYRGLIKKLQAAEQEEFAQRVTNDL 443
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 75/133 (56%)
Query: 2 SKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVV 61
SKE+L + E+KR +R +K +R+++ D + VL + QDQV ++++DV+
Sbjct: 52 SKEALALVTEIKRAARGKKDVERLLKDRSARMMRYDYLIVLLTLKDQDQVDRVLEIFDVI 111
Query: 62 RKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGL 121
R+E+WY+P ++ ++ + ++ ++ + K++ ++L E++ + +R F+
Sbjct: 112 REEMWYKPSAQLFQSIMEFVIKHDRIEDWKRLLKNLHDEKLEPSEEMLVFPVRKFASLAN 171
Query: 122 PSEAMFIYNEMRS 134
++ M IY +++
Sbjct: 172 FAKCMEIYEAIKA 184
>gi|414879222|tpg|DAA56353.1| TPA: hypothetical protein ZEAMMB73_432076 [Zea mays]
Length = 471
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 46/66 (69%), Gaps = 7/66 (10%)
Query: 1 MSKESLMVAKELKRLQS------HPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLC 54
M KE LMV +LKRL + HP R ++F++SHVSRLL++DL++VLAE RQD V L
Sbjct: 368 MGKEGLMVVAQLKRLAALPPAGGHP-RLEQFMRSHVSRLLRTDLLAVLAELLRQDHVSLS 426
Query: 55 MKLYDV 60
MK+ +
Sbjct: 427 MKVCSL 432
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 42/73 (57%), Gaps = 16/73 (21%)
Query: 1 MSKESLMVAKELKRLQS------HPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLC 54
M KE LM LKRL + HP R ++F++SHVS+LL++DL LAE RQD L
Sbjct: 53 MGKEGLMAVALLKRLAALPPVGCHP-RLEQFMRSHVSQLLRTDL---LAELLRQDHASLS 108
Query: 55 MK------LYDVV 61
MK LY VV
Sbjct: 109 MKEPARLLLYCVV 121
>gi|357454525|ref|XP_003597543.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355486591|gb|AES67794.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 246
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 91/159 (57%), Gaps = 3/159 (1%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYD- 59
+SKES+ V LK ++ + ++ +KS + RLLK D++ VLAE RQ+Q+ L +K+ +
Sbjct: 49 ISKESVQVIHALKLAKNSEEKLNQVLKSKLLRLLKPDVLIVLAELHRQNQLHLSLKVLEF 108
Query: 60 -VVRKEIWYRPDMF-FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117
+ +E Y + Y D +++L +NK + +A++++ ++ + + D F ++I +
Sbjct: 109 IISDEEAGYDKLLLPLYSDTILLLGKNKMIEKAEEMFYEVVEKGLKPDTRLFNEMIGVYL 168
Query: 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156
G +AM +Y M++S P +L F ++++ L+ E
Sbjct: 169 QVGNTEKAMEVYRSMKASGCLPDALTFTILIRNLMNNGE 207
>gi|388507400|gb|AFK41766.1| unknown [Medicago truncatula]
Length = 246
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 91/159 (57%), Gaps = 3/159 (1%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYD- 59
+SKES+ V LK ++ + ++ +KS + RLLK D++ VLAE RQ+Q+ L +K+ +
Sbjct: 49 ISKESVQVIHALKLAKNSEEKLNQVLKSKLLRLLKPDVLIVLAELHRQNQLHLSLKVLEF 108
Query: 60 -VVRKEIWYRPDMF-FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117
+ +E Y + Y D +++L +NK + +A++++ ++ + + D F ++I +
Sbjct: 109 IISDEEAGYDKLLLPLYSDTILLLGKNKMIEKAEEMFYEVVEKGLKPDTRLFNEMIGVYL 168
Query: 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156
G +AM +Y M++S P +L F ++++ L+ E
Sbjct: 169 QVGNTEKAMEVYRSMKASGCLPDALTFTILIRNLMNNGE 207
>gi|302792405|ref|XP_002977968.1| hypothetical protein SELMODRAFT_417822 [Selaginella moellendorffii]
gi|300153989|gb|EFJ20625.1| hypothetical protein SELMODRAFT_417822 [Selaginella moellendorffii]
Length = 478
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 87/167 (52%), Gaps = 3/167 (1%)
Query: 2 SKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVV 61
++E++ L+ ++ P + D +++++ R+LK D++ VL ++ + + +K++ ++
Sbjct: 287 TQEAMQTVTALRHRKNDPDKVDSYLETNAPRMLKKDMLCVLTILRKHREEEIALKVFRII 346
Query: 62 RKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGL 121
KE WY P+ + YR+++++L ++ E +++ E+ ++H F ++ A D
Sbjct: 347 EKESWYEPNSYLYRELILILTNLRRFDELWTTMDEMDANEMHPNRHMFVPVMSACFDLFD 406
Query: 122 PSEAMFIYNEMRSSPATPI-SLPFRVILKGL--IPYPEFREKVKDDF 165
Y+ M +P + L +R ++K L EF ++V +D
Sbjct: 407 FQNLERFYSRMLKTPGLHLHHLVYRGLIKKLQAAEQEEFAQRVSNDL 453
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 75/133 (56%)
Query: 2 SKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVV 61
SKE+L + E+KR +R +K +R+++ D + VL + QDQV ++++DV+
Sbjct: 52 SKEALALVTEIKRAARGKKDVERLLKDRSARMMRYDYLIVLLTLKDQDQVDRVLEIFDVI 111
Query: 62 RKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGL 121
R+E+WY+P ++ ++ + ++ ++ + K++ ++L E++ + +R F+
Sbjct: 112 REEMWYKPSAQLFQSIMEFVIKHDRIEDWKRLLKNLHDEKLEPSEEMLVFPVRKFASLAN 171
Query: 122 PSEAMFIYNEMRS 134
++ M IY +++
Sbjct: 172 FAKCMEIYEAIKA 184
>gi|168045490|ref|XP_001775210.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673423|gb|EDQ59946.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 404
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 72/147 (48%), Gaps = 2/147 (1%)
Query: 26 IKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNK 85
+K H L D+ VL E QRQ ++++ +K+ WY P+ Y ++ L R
Sbjct: 1 MKKHPKPLSPFDITCVLTELQRQHDWRCTLEVFSWSKKQSWYCPNSRLYTRLIGFLGREG 60
Query: 86 KVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFR 145
+V A +++++ E+ DQ+T+ ++ A+ + + EA+ +++ M+ S P P
Sbjct: 61 RVHNATLLFQEMLLEKCQADQYTYTALVNAYGKAKMFEEALAVFSHMKESN-EPNCQPNT 119
Query: 146 VILKGLIPYPEFREKVKDDFLELFPDM 172
V LI + + D +++F DM
Sbjct: 120 VTCNALID-ALVKGGLYDQAIQVFFDM 145
>gi|449443726|ref|XP_004139628.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Cucumis sativus]
Length = 456
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 73/133 (54%), Gaps = 5/133 (3%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
+K+++++R+++WYRP Y +++ML + K+ +A ++++++ E ++ ++
Sbjct: 84 LKVFELLREQLWYRPYAGMYIKLIVMLGKCKQQEKAYELFQEMIEEGCEVSHESYTALLS 143
Query: 115 AFSDSGLPSEAMFIYNEMRSSP-ATPISLPFRVILKGLIPYPEFR--EKVKDDFLE--LF 169
A+S SGL EA I NEM++SP P + +++K + F + + D + +
Sbjct: 144 AYSRSGLLDEAFSILNEMKNSPDCQPDVHTYSILIKSCLQVFAFNKAQTLLSDMVTRGIK 203
Query: 170 PDMIVYDPPEDLF 182
P+ I Y+ D +
Sbjct: 204 PNTITYNTFIDAY 216
>gi|449448168|ref|XP_004141838.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
gi|449491766|ref|XP_004158997.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
Length = 230
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 7/138 (5%)
Query: 1 MSKESLMVAKELKRLQ-SHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYD 59
+S E++ + LKR + S P + + + + +SRLLK+DLV+ L E RQ++ L ++++
Sbjct: 50 LSIEAIQAIQSLKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFA 109
Query: 60 VVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF----DQHTFGDIIRA 115
V++ E YR ++ Y ++ L+RN E ++ DL + + D +I+A
Sbjct: 110 VIKSE--YRAELGLYAEVAAALSRNGAAEEIDRLVSDLDGGDGVIEWGDDDKGLIKLIKA 167
Query: 116 FSDSGLPSEAMFIYNEMR 133
+ IY MR
Sbjct: 168 VISGNRRESTVRIYRMMR 185
>gi|449475395|ref|XP_004154439.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Cucumis sativus]
Length = 511
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 71/127 (55%), Gaps = 5/127 (3%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
+K+++++R+++WYRP Y +++ML + K+ +A ++++++ E ++ ++
Sbjct: 139 LKVFELLREQLWYRPYAGMYIKLIVMLGKCKQQEKAYELFQEMIEEGCEVSHESYTALLS 198
Query: 115 AFSDSGLPSEAMFIYNEMRSSP-ATPISLPFRVILKGLIPYPEFR--EKVKDDFLE--LF 169
A+S SGL EA I NEM++SP P + +++K + F + + D + +
Sbjct: 199 AYSRSGLLDEAFSILNEMKNSPDCQPDVHTYSILIKSCLQVFAFNKAQTLLSDMVTRGIK 258
Query: 170 PDMIVYD 176
P+ I Y+
Sbjct: 259 PNTITYN 265
>gi|125524506|gb|EAY72620.1| hypothetical protein OsI_00485 [Oryza sativa Indica Group]
Length = 257
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 1 MSKESLMVAKELKRLQSH---PVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKL 57
+S E+++ + LKRL S P + + RLLK DL++ +AE QRQ L +
Sbjct: 49 LSTEAILAVQSLKRLTSSDRSPAAAAAAASTSLGRLLKGDLLAAMAELQRQGHWSLALAA 108
Query: 58 YDVVRKEIWYRPDMFFY 74
V R E WYRPD Y
Sbjct: 109 LHVARAEPWYRPDPALY 125
>gi|115434634|ref|NP_001042075.1| Os01g0158100 [Oryza sativa Japonica Group]
gi|9757668|dbj|BAB08187.1| unnamed protein product [Oryza sativa Japonica Group]
gi|15528644|dbj|BAB64665.1| Tha8 -like [Oryza sativa Japonica Group]
gi|113531606|dbj|BAF03989.1| Os01g0158100 [Oryza sativa Japonica Group]
gi|125569105|gb|EAZ10620.1| hypothetical protein OsJ_00452 [Oryza sativa Japonica Group]
Length = 267
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 1 MSKESLMVAKELKRLQSH---PVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKL 57
+S E+++ + LKRL S P + + RLLK DL++ +AE QRQ L +
Sbjct: 49 LSTEAILAVQSLKRLTSSDRSPAAAAAAASTSLGRLLKGDLLAAMAELQRQGHWSLALAA 108
Query: 58 YDVVRKEIWYRPDMFFY 74
V R E WYRPD Y
Sbjct: 109 LHVARAEPWYRPDPALY 125
>gi|356527376|ref|XP_003532287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Glycine max]
Length = 515
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 65/119 (54%), Gaps = 6/119 (5%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
+K+++++ ++IWY+PD Y +++ML + K+ +A ++++ + E + D ++ ++
Sbjct: 141 LKVFELLHEQIWYKPDTGVYIKLIVMLGKCKQPEKAHELFQAMVDEGCVLDCESYTALLS 200
Query: 115 AFSDSGLPSEAMFIYNEMRSSPAT-PISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
A+S SGL +A + EM+++P P + ++LK + F D L DM
Sbjct: 201 AYSRSGLLDKAFSLLEEMKNTPGCQPDVQTYSILLKSCLQVFAF-----DKIQSLLSDM 254
>gi|302766721|ref|XP_002966781.1| hypothetical protein SELMODRAFT_407940 [Selaginella moellendorffii]
gi|300166201|gb|EFJ32808.1| hypothetical protein SELMODRAFT_407940 [Selaginella moellendorffii]
Length = 234
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 3/140 (2%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
MS E++ VA +K+ + P R +++ VSRLL +L+S+ F R ++ L ++ +
Sbjct: 49 MSLETVSVATMMKKAKGDPDRLKSVLRTSVSRLLTKELMSLFWVFVRAKEMDLAELIFGL 108
Query: 61 VRKEIWYRPDMFFYRDMLMMLAR---NKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117
VRKE WY+P Y ++ + +K + Q+ ++ + E ++ + +F I+A
Sbjct: 109 VRKESWYKPQASLYLHLITAYSERLDSKAMERIFQLLDESEEEGLIPNVFSFQTPIQACV 168
Query: 118 DSGLPSEAMFIYNEMRSSPA 137
S M +YN M +S
Sbjct: 169 SSNDFDACMRLYNRMHASTC 188
>gi|302790153|ref|XP_002976844.1| hypothetical protein SELMODRAFT_443353 [Selaginella moellendorffii]
gi|300155322|gb|EFJ21954.1| hypothetical protein SELMODRAFT_443353 [Selaginella moellendorffii]
Length = 566
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 67/125 (53%), Gaps = 5/125 (4%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+ +E+++ + LKR + ++ +KS VSRLLK+D++ VL E RQ+ C+ Y+
Sbjct: 219 LGREAILTVQSLKRAKGVREEMEQVLKSQVSRLLKTDMLEVLRELHRQND---CVLAYEE 275
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
++ E+ PD Y +++ R ++ +A ++++K+ + + TF + + G
Sbjct: 276 LQGEML--PDGLVYTELMTAYLRCERPNDAIDTFQEMKQLGLTVELKTFTTLAKWLEKKG 333
Query: 121 LPSEA 125
L EA
Sbjct: 334 LGEEA 338
>gi|302784186|ref|XP_002973865.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
gi|300158197|gb|EFJ24820.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
Length = 616
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 6/88 (6%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
K IW +PD+F ++ M A+ + E+++V++D + ++VLF + +I A+S SG P
Sbjct: 194 KRIWLKPDVFVDSALVTMFAKCGSLKESREVFDDCRWKDVLF----WNSMIVAYSQSGHP 249
Query: 123 SEAMFIYNEMRSS--PATPISLPFRVIL 148
EA+ ++ M SS P P ++ + +L
Sbjct: 250 REAIELFKSMGSSSPPVEPNAITYTTVL 277
>gi|302797623|ref|XP_002980572.1| hypothetical protein SELMODRAFT_444589 [Selaginella moellendorffii]
gi|300151578|gb|EFJ18223.1| hypothetical protein SELMODRAFT_444589 [Selaginella moellendorffii]
Length = 1048
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 67/125 (53%), Gaps = 5/125 (4%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+ +E+++ + LKR + ++ +KS VSRLLK+D++ VL E RQ+ C+ Y+
Sbjct: 219 LGREAILTVQSLKRAKGVREEMEQVLKSQVSRLLKTDMLEVLRELHRQND---CVLAYEE 275
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
++ E+ PD Y +++ R ++ +A ++++K+ + + TF + + G
Sbjct: 276 LQGEM--LPDGLVYTELMTAYLRCERPNDAIDTFQEMKQLGLTVELKTFTTLAKWLEKKG 333
Query: 121 LPSEA 125
L EA
Sbjct: 334 LGEEA 338
>gi|356528924|ref|XP_003533047.1| PREDICTED: uncharacterized protein LOC100788379 [Glycine max]
Length = 238
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 10/164 (6%)
Query: 1 MSKESLMVAKELKRLQ-SHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYD 59
+S E++ + LKRL ++P + + ++RL+KSDL++ L E RQ + ++++
Sbjct: 49 LSIEAIQAIQTLKRLHRTNPPELTSLVSNTLTRLIKSDLLATLRELLRQQHCTIALRVFS 108
Query: 60 VVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF---DQHTFGDIIRAF 116
+R E Y D+ Y +M LA N ++ DL E + D +I+A
Sbjct: 109 TLRSE--YGADLSLYAEMAQTLAANDMTDHLDRLILDLASENEIKCGDDHKGLASLIKAV 166
Query: 117 SDSGLPSEAMFIYNEMRSSPATPISLP----FRVILKGLIPYPE 156
+ + IY M S ++ P V++ GL + E
Sbjct: 167 VAARSRESTVRIYGLMNKSGYGSVTEPDEYVVEVLVSGLKSFGE 210
>gi|15222150|ref|NP_172763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75200670|sp|Q9SAD9.1|PPR40_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g13040, mitochondrial; Flags: Precursor
gi|4850387|gb|AAD31057.1|AC007357_6 F3F19.6 [Arabidopsis thaliana]
gi|332190841|gb|AEE28962.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 517
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 39 VSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLK 98
S++ F R+ + KL D + E+ PD FY +L L ++ V +A V+ D+
Sbjct: 364 TSLIKAFLREGNSSVAKKLLDQM-TELGLSPDRIFYTTILDHLCKSGNVDKAYGVFNDMI 422
Query: 99 REEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
E+ D ++ +I SG +EA+ ++ +M+ P L F+ I+ GLI
Sbjct: 423 EHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLI 476
Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 59 DVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118
D++ EI PD Y ++ L R+ +V EA +++ED+K +E D+ TF II
Sbjct: 420 DMIEHEI--TPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLIR 477
Query: 119 SGLPSEAMFIYNEM 132
S A ++++M
Sbjct: 478 GKKLSAAYKVWDQM 491
>gi|42573413|ref|NP_974803.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122214363|sp|Q3E9F0.1|PP392_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g18475
gi|110737103|dbj|BAF00503.1| hypothetical protein [Arabidopsis thaliana]
gi|332005185|gb|AED92568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 506
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100
++ F R +V K+ D ++K P+++ Y ++ + K+ EAKQ ++++K+
Sbjct: 274 MINGFCRAGEVERAKKILDFMKKN-GCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKT 332
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+ D + ++ F +G EAM + EM++S +L + VIL+GL
Sbjct: 333 GLKLDTVGYTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGL 383
>gi|297844198|ref|XP_002889980.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335822|gb|EFH66239.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 517
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 39 VSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLK 98
S++ F R+ + KL D + E+ PD FY +L L ++ V +A ++ D+
Sbjct: 364 TSLIKAFLREGNSSVAKKLLDQM-TELGLSPDRIFYTTILDHLCKSGNVDKAYGIFNDMI 422
Query: 99 REEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
E+ D ++ +I SG +EA+ ++ +M+ P L F+ I+ GLI
Sbjct: 423 EHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLI 476
Score = 37.0 bits (84), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 59 DVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTF----GDIIR 114
D++ EI PD Y ++ L R+ +V EA +++ED+K +E D+ TF G +IR
Sbjct: 420 DMIEHEI--TPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLIR 477
>gi|162462012|ref|NP_001105250.1| thylakoid assembly8 [Zea mays]
gi|45183621|gb|AAS55479.1| Tha8 [Zea mays]
gi|413947428|gb|AFW80077.1| thylakoid assembly8 [Zea mays]
Length = 263
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 22/210 (10%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSH---VSRLLKSDLVSVLAEFQRQDQVFLCMKL 57
+S E+++ + LKRL S + + RLLK+DLV+ +AE QRQ L +
Sbjct: 48 LSTEAILAIQSLKRLTSADRSPAAASAAAATALGRLLKADLVAAMAELQRQGHWSLALAA 107
Query: 58 YDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEA-KQVWEDLKREEVLFDQHTFGD----- 111
+ R E WYRPD Y + + E + D E L ++ + G
Sbjct: 108 LHIARAEPWYRPDPALYATFVSSAPHSPSGGEGDAEAAVDALVEAFLEEKASGGGFVDGE 167
Query: 112 --------IIRAFSDSGLPSEAMFIYN-EMRSSPATPISLPFRVILKGL--IPYPEFREK 160
++RA G A +Y +R + +RV+ +G+ + + E +
Sbjct: 168 EDVYKLTRLLRALVAKGRGRAAWRVYEAAVRKGGLNVDAYVYRVMARGMKRLGFQEEAAE 227
Query: 161 VKDDFLELFPDMIVYDPPEDLFEDQEWRRE 190
V++DF E + V P D+ ++ R E
Sbjct: 228 VEEDFAEW--ETTVSPPARDVLDEMRARDE 255
>gi|255578090|ref|XP_002529915.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530592|gb|EEF32469.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 636
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
+K+++++R++IWYRP Y +++ML + K+ +A ++++ + E ++ ++
Sbjct: 139 LKVFELLREQIWYRPYSGMYIKLIVMLGKCKQPEKAHELFQAMIHEGCDVSHESYTALLS 198
Query: 115 AFSDSGLPSEAMFIYNEMRSSP-ATPISLPFRVILKGLIPYPEFREKVKD-----DFLEL 168
A+ SGL +A + EM+ +P P + +++K + F +K K + L +
Sbjct: 199 AYGRSGLLDKAFSLLEEMKRNPDCQPDVHTYSILIKSCVQVFAF-DKAKTLLSNMESLGI 257
Query: 169 FPDMIVYDPPEDLF 182
P+ I Y+ D +
Sbjct: 258 SPNTITYNTLIDAY 271
>gi|302792401|ref|XP_002977966.1| hypothetical protein SELMODRAFT_417819 [Selaginella moellendorffii]
gi|300153987|gb|EFJ20623.1| hypothetical protein SELMODRAFT_417819 [Selaginella moellendorffii]
Length = 234
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 72/140 (51%), Gaps = 3/140 (2%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
MS E++ VA +K+ + P R +++ VSRLL+ +L+S+ F R ++ L ++ +
Sbjct: 49 MSLETVSVATMMKKAKGDPDRLKSVLRTSVSRLLREELMSLFWVFVRAKEMDLAELIFGL 108
Query: 61 VRKEIWYRPDMFFYRDMLMMLAR---NKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117
+RKE WY+P Y ++ + +K + Q+ ++ + E ++ + +F I+A
Sbjct: 109 IRKESWYKPQASLYLHLITAYSERLDSKAMERIFQLLDESEEEGLIPNVFSFQTPIQACV 168
Query: 118 DSGLPSEAMFIYNEMRSSPA 137
S M +Y+ M +S
Sbjct: 169 SSTDFDACMTLYDRMHASTC 188
>gi|302765999|ref|XP_002966420.1| hypothetical protein SELMODRAFT_407939 [Selaginella moellendorffii]
gi|300165840|gb|EFJ32447.1| hypothetical protein SELMODRAFT_407939 [Selaginella moellendorffii]
Length = 261
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 2 SKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEF--QRQDQVFLCMKLYD 59
S+ES V + L+ + P + D ++ SH SRLL DL VL F +++ + L K+++
Sbjct: 70 SRESATVIQLLRSAKKSPAKLDAYLGSHASRLLCKDLQYVLNVFLKNQENDIDLAFKIFE 129
Query: 60 VVRKEIWYRPDMFFYRDMLMMLAR 83
++RKE WY+P Y ++ R
Sbjct: 130 LIRKESWYKPSESTYMRLVSFYCR 153
>gi|302792757|ref|XP_002978144.1| hypothetical protein SELMODRAFT_417820 [Selaginella moellendorffii]
gi|300154165|gb|EFJ20801.1| hypothetical protein SELMODRAFT_417820 [Selaginella moellendorffii]
Length = 261
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 2 SKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEF--QRQDQVFLCMKLYD 59
S+ES V + L+ + P + D ++ SH SRLL DL VL F +++ + L K+++
Sbjct: 70 SRESATVIQLLRSAKKSPAKLDAYLGSHASRLLCKDLQYVLNVFLKNQENDIDLAFKIFE 129
Query: 60 VVRKEIWYRPDMFFYRDMLMMLAR 83
++RKE WY+P Y ++ R
Sbjct: 130 LIRKESWYKPSESTYMRLVSFYCR 153
>gi|15232255|ref|NP_189412.1| uncharacterized protein [Arabidopsis thaliana]
gi|9294480|dbj|BAB02699.1| unnamed protein product [Arabidopsis thaliana]
gi|49660179|gb|AAT68380.1| hypothetical protein At3g27750 [Arabidopsis thaliana]
gi|60547779|gb|AAX23853.1| hypothetical protein At3g27750 [Arabidopsis thaliana]
gi|332643839|gb|AEE77360.1| uncharacterized protein [Arabidopsis thaliana]
Length = 222
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 4/136 (2%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+S E++ + LKR V ++ + RL+KSDL+SVL E RQD L + +
Sbjct: 48 LSTEAIQSIQSLKRAHRTGVSLSLTLRP-LRRLIKSDLISVLRELLRQDYCTLAVHVLST 106
Query: 61 VRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119
+R E Y P D+ Y D++ L RNK+ E ++ ++ + D +IRA +
Sbjct: 107 LRTE--YPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDGIDQRSDDKALAKLIRAVVGA 164
Query: 120 GLPSEAMFIYNEMRSS 135
+ +Y MR S
Sbjct: 165 ERRESVVRVYTLMRES 180
>gi|242092154|ref|XP_002436567.1| hypothetical protein SORBIDRAFT_10g004910 [Sorghum bicolor]
gi|241914790|gb|EER87934.1| hypothetical protein SORBIDRAFT_10g004910 [Sorghum bicolor]
Length = 492
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 91/187 (48%), Gaps = 9/187 (4%)
Query: 2 SKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVV 61
S+++L V L+R + V R RLL ++ L E + +K+++++
Sbjct: 74 SRKALSVI--LRREATKAVLDKRKPGKGTRRLLPGTVLEALHERVAALRWDSALKVFELM 131
Query: 62 RKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGL 121
R ++WYRP + Y ++ ML + KK +A ++++ + E + ++ ++ A+S SG
Sbjct: 132 RDQVWYRPYIGIYIKLITMLGKCKKPEKAHELFQAMIDEGCAPNLESYTALVSAYSRSGR 191
Query: 122 PSEAMFIYNEMRSSPAT-PISLPFRVILKGLIPYPEFREKVKDDFLELF-----PDMIVY 175
EA + + M+ +P P + +++K + +F EKVK ++ P+ + Y
Sbjct: 192 FHEAFNLLDRMKDTPGCQPDVKTYSILIKSCLHAYDF-EKVKSLLTDMARAGIRPNTVTY 250
Query: 176 DPPEDLF 182
+ D +
Sbjct: 251 NTLIDAY 257
>gi|357125122|ref|XP_003564244.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Brachypodium distachyon]
Length = 502
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 72/134 (53%), Gaps = 7/134 (5%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
+K+++++R ++WYRP + Y ++ ML + K+ +A ++++ + E + ++ ++
Sbjct: 135 LKVFELMRDQVWYRPYVGIYIKLITMLGKCKQPGKAHELFQAMVDEGCAPNLESYTALVS 194
Query: 115 AFSDSGLPSEAMFIYNEMRSSPAT-PISLPFRVILKGLIPYPEFREKVKDDFLELF---- 169
A+S SG A + + M+++P P + +++K + +F +KVKD ++
Sbjct: 195 AYSRSGSFDRAFSLLDRMKATPGCRPDVQTYSILIKSCLHAYDF-DKVKDLLADMACGGI 253
Query: 170 -PDMIVYDPPEDLF 182
P+ + Y+ D +
Sbjct: 254 RPNTVTYNTLVDAY 267
>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
Length = 1320
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD + Y +++++L +N +VVEA+Q+ +++ V D + +I F G S A
Sbjct: 309 KPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACK 368
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174
+++EMR P + + ++ G+ + E E+F +M+V
Sbjct: 369 LFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEA-----REMFNEMLV 410
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 39 VSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLK 98
+V++ F + V KL+D +R++ PD+ Y ++ + ++ K+VEA++++ ++
Sbjct: 351 TTVISGFCKLGNVSAACKLFDEMRRKK-IVPDIVTYTSVIHGICKSGKMVEAREMFNEML 409
Query: 99 REEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156
+ + D+ T+ +I + +G EA ++N+M TP + + + GL E
Sbjct: 410 VKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGE 467
>gi|224076660|ref|XP_002304977.1| predicted protein [Populus trichocarpa]
gi|222847941|gb|EEE85488.1| predicted protein [Populus trichocarpa]
Length = 381
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
KE +PD Y + L+ LA K++ +A +V E++K E + FD ++ +IR F + G
Sbjct: 227 KEKNVKPDGRSYNEKLLGLALEKRMKDATKVVEEMKSEGIEFDIFSYNALIRGFVNEGDL 286
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPY 154
EA Y E+R S P L F+ LIP+
Sbjct: 287 EEAKGWYGEIRKSDIKPDKLTFKT----LIPF 314
Score = 36.2 bits (82), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
+R Y+D + LA KK +++ E+ K+ + + + +I + SG+ A
Sbjct: 55 FRTKSAIYKDTIRRLAAAKKFRYVEEILENQKQYQDMSKEGFNARLISLYGSSGMFDNAR 114
Query: 127 FIYNEMRSSPATPISLPFRVILKGLIPYPEFRE-----KVKDDFLELFPDMIVYDP 177
+++EM L F +L + +F E + + LE+ PD++ Y+
Sbjct: 115 KVFDEMLERKCARTVLSFNALLGACVNSKKFDEVGGLFRGLSEELEIEPDLVSYNT 170
>gi|45183613|gb|AAS55478.1| Tha8 [Zea mays]
Length = 263
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSH---VSRLLKSDLVSVLAEFQRQDQVFLCMKL 57
+S E+++ + LKRL S + + RLLK+DLV+ +AE QRQ L +
Sbjct: 48 LSTEAILAIQSLKRLTSADRSPAAASAAAATALGRLLKADLVAAMAELQRQGHWSLALAA 107
Query: 58 YDVVRKEIWYRPDMFFY 74
+ R E WYRPD Y
Sbjct: 108 LHIARAEPWYRPDPALY 124
>gi|357499035|ref|XP_003619806.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
gi|355494821|gb|AES76024.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
Length = 302
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
K+ PDMF Y ++ L +N ++ +A++V+ DL + F+ +I GL
Sbjct: 92 KDRGIEPDMFTYTMLVDGLCKNGRLKDAQEVYRDLMVKGYHFNACMHNVMINGLCKEGLF 151
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
EA+F+ +EM + TP + ++ +++ L F+ + D ++L +M+
Sbjct: 152 DEALFVLSEMEDNGCTPDVVTYKTLIRAL-----FKNDMNDKAVKLLREML 197
>gi|255578371|ref|XP_002530052.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530468|gb|EEF32352.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 554
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 50 QVFLCMKLYDVVRK------EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVL 103
+ FL +++ +K E+ PD FY ++ L ++ KV A ++ D+ + +
Sbjct: 368 KAFLGKGSFNIAKKLLDQMTEMGLSPDCIFYTTIIDHLCKSGKVEMAHSIFCDMVEQGIS 427
Query: 104 FDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
D +F +I F SEAM +Y EM++ + P + +++I+ GLI
Sbjct: 428 PDVISFNALINGFCKCSRVSEAMHLYEEMQNRGSYPDEVTYKLIIGGLI 476
>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
Length = 442
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
K +PD+ Y +L L + V+A+++ +++ + L D TF +I GL
Sbjct: 209 KSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLM 268
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
+A+ ++ +M TP S+ + I+ GL + D LELF +M
Sbjct: 269 VDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKL-----DQALELFNEM 313
>gi|297812025|ref|XP_002873896.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319733|gb|EFH50155.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 507
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100
++ F R +V + D ++K P+++ Y ++ + K+ EAKQV++++K+
Sbjct: 275 MINGFCRSGEVERAKMILDFMKKN-GCNPNVYNYSALMNGFCKEGKIQEAKQVFDEVKKT 333
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+ D + ++ +G EAM + EM++S +L + VIL+GL
Sbjct: 334 GLKLDTVGYTTLMNCLCRNGEIDEAMKLLGEMKASRCRADALTYNVILRGL 384
Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
+++ F ++ ++ +++D V+K + D Y ++ L RN ++ EA ++ ++K
Sbjct: 309 ALMNGFCKEGKIQEAKQVFDEVKK-TGLKLDTVGYTTLMNCLCRNGEIDEAMKLLGEMKA 367
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
D T+ I+R S G EA+ + ++ +R+IL L E +
Sbjct: 368 SRCRADALTYNVILRGLSSEGRSEEALQMLDQWGCEGVHLNKGSYRIILNALCCNGELEK 427
Query: 160 KVK 162
VK
Sbjct: 428 AVK 430
>gi|326522248|dbj|BAK07586.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 548
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 56 KLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
KL+D + K Y+P + Y ++ L N ++ EA +VW+D+ + T+ +I+
Sbjct: 401 KLFDELEKG--YKPSLLTYNSLISGLCENGELQEAGKVWDDMVERRYEPNAMTYEALIKG 458
Query: 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLE 167
F G P E ++ EM + P + ++V++ L E + DD ++
Sbjct: 459 FCKIGKPDEGAAVFTEMVTKGCAPSKVLYQVLVDSL------SEPIHDDIVD 504
>gi|414591641|tpg|DAA42212.1| TPA: hypothetical protein ZEAMMB73_141452 [Zea mays]
Length = 472
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
PD+F Y ML A +V+ +++ + + + D +TF I+A+++ G+ +AM
Sbjct: 322 NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVQIKAYANCGMLDKAMI 381
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
I+NEMR P + +R ++ L R DD +E F MI
Sbjct: 382 IFNEMRDHGVKPDVVTYRTVIAALC-----RIGKMDDAMEKFNQMI 422
>gi|334188265|ref|NP_199684.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635750|sp|Q9FKC3.2|PP424_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g48730, chloroplastic; Flags: Precursor
gi|332008334|gb|AED95717.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 508
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/134 (20%), Positives = 73/134 (54%), Gaps = 7/134 (5%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
+++++++R+++WY+P++ Y +++ML + K+ +A ++++++ E + + + ++
Sbjct: 134 IQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVS 193
Query: 115 AFSDSGLPSEAMFIYNEMRSS-PATPISLPFRVILKGLIPYPEFREKVKDDFLEL----- 168
A+S SG A + M+SS P + +++K + F +KV+D ++
Sbjct: 194 AYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAF-DKVQDLLSDMRRQGI 252
Query: 169 FPDMIVYDPPEDLF 182
P+ I Y+ D +
Sbjct: 253 RPNTITYNTLIDAY 266
>gi|224069810|ref|XP_002303045.1| predicted protein [Populus trichocarpa]
gi|222844771|gb|EEE82318.1| predicted protein [Populus trichocarpa]
Length = 388
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 70/132 (53%), Gaps = 7/132 (5%)
Query: 57 LYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116
+++++R+++WYRP Y +++ML + K+ +A Q+++ + E ++ ++ A+
Sbjct: 16 VFELLREQLWYRPYAGMYVKLIVMLGKCKQPDKAHQLFQAMIDEGCAVTHESYTALLSAY 75
Query: 117 SDSGLPSEAMFIYNEMRSSP-ATPISLPFRVILKGLIPYPEFREKVKD-----DFLELFP 170
SGL +A I EM+++P P + +++K + F +KV+ + L + P
Sbjct: 76 GRSGLFDKAFSIMEEMKNTPDCRPDVHTYSILIKSCLQVFAF-DKVQVLLSDMESLGIRP 134
Query: 171 DMIVYDPPEDLF 182
+ + Y+ D +
Sbjct: 135 NTVTYNTVIDAY 146
>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
Length = 827
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+F Y ML A +V+ +++ + + + D +TF +I+A+++ G+ +AM I
Sbjct: 370 PDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMII 429
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
+NEMR P + +R ++ L R DD +E F MI
Sbjct: 430 FNEMRDHGVKPDVVTYRTVIAALC-----RIGKMDDAMEKFNQMI 469
>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
Length = 817
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+F Y ML A +V+ +++ + + + D +TF +I+A+++ G+ +AM I
Sbjct: 360 PDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMII 419
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
+NEMR P + +R ++ L R DD +E F MI
Sbjct: 420 FNEMRDHGVKPDVVTYRTVIAALC-----RIGKMDDAMEKFNQMI 459
>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
Length = 814
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+F Y ML A +V+ +++ + + + D +TF +I+A+++ G+ +AM I
Sbjct: 357 PDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMII 416
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
+NEMR P + +R ++ L R DD +E F MI
Sbjct: 417 FNEMRDHGVKPDVVTYRTVIAALC-----RIGKMDDAMEKFNQMI 456
>gi|414591629|tpg|DAA42200.1| TPA: hypothetical protein ZEAMMB73_531547 [Zea mays]
Length = 462
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
PD+F Y ML A +V+ +++ + + + D +TF +I+A+++ G+ +AM
Sbjct: 26 NPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMI 85
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
I+NEMR P + + ++ L R DD +E F MI
Sbjct: 86 IFNEMRDHGVKPHVVTYMTVIAALC-----RIGKMDDAMEKFNQMI 126
>gi|115466100|ref|NP_001056649.1| Os06g0125300 [Oryza sativa Japonica Group]
gi|6983867|dbj|BAA90802.1| salt-inducible protein-like [Oryza sativa Japonica Group]
gi|113594689|dbj|BAF18563.1| Os06g0125300 [Oryza sativa Japonica Group]
gi|125553869|gb|EAY99474.1| hypothetical protein OsI_21443 [Oryza sativa Indica Group]
gi|125595884|gb|EAZ35664.1| hypothetical protein OsJ_19951 [Oryza sativa Japonica Group]
Length = 535
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
++P + Y ++ L N+++ EA +VW+D+ + T+ +I+ +G P+E
Sbjct: 398 FKPSLLTYNSLISGLCENEELQEAGRVWDDMVERGYEPNAMTYEALIKGLCKTGKPNEGA 457
Query: 127 FIYNEMRSSPATPISLPFRVILKGL 151
++ EM S P SL F+V++ L
Sbjct: 458 TVFEEMVSRGCKPSSLLFQVLVDSL 482
>gi|357129239|ref|XP_003566273.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 550
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 10/131 (7%)
Query: 58 YDVVR--KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
Y+VVR + PD+ Y ++ L R ++V EA V + + E + HT+ I+ A
Sbjct: 155 YEVVRWMTDNGVAPDVVTYSTLICGLCRAQRVAEALGVLDLMLEEGCHPNAHTYTPIMHA 214
Query: 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLE------LF 169
+ +G+ EA + + M ++ P + + V+++ L F E D LE
Sbjct: 215 YCTTGMIHEAKKLLDSMIAAGCAPSTATYNVLIEALSKVGAFEE--VDVLLEESTSKGWI 272
Query: 170 PDMIVYDPPED 180
PD I Y D
Sbjct: 273 PDTITYSTYMD 283
>gi|326527465|dbj|BAK08007.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 363
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL 97
L+ L +F R ++ + L D + K+ RP+ Y ++ L RN +V EA +++E +
Sbjct: 183 LIKGLCQFGRFNEA---LSLLDEMPKQDC-RPNAMTYSTLMHFLCRNCRVDEAFELFERM 238
Query: 98 KREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEF 157
++EE+ D + ++ G + A ++ M S P S ++V+L GL+ F
Sbjct: 239 RKEEIDADTVVYNILVSGLCREGRVTSAYDLFKSMSSQGCHPNSGTYQVLLDGLVASKNF 298
Query: 158 RE 159
E
Sbjct: 299 VE 300
>gi|413944457|gb|AFW77106.1| hypothetical protein ZEAMMB73_510937 [Zea mays]
Length = 492
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
+K+++++R ++WY+P + Y ++ ML + K+ +A Q+++ + E + ++ ++
Sbjct: 125 LKVFELMRDQVWYKPHIGIYIKLITMLGKCKQPEKAHQLFQAMIDEGCAPNLQSYTALVS 184
Query: 115 AFSDSGLPSEAMFIYNEMRSSPAT-PISLPFRVILKGLIPYPEFREKVKDDFLELF---- 169
+S SG EA + + M+ +P P + +++K + +F EKVK ++
Sbjct: 185 TYSRSGRFREAFDLLDRMKDTPGCQPDVQTYSILIKSCLHAYDF-EKVKSLLADMARAGI 243
Query: 170 -PDMIVYDPPEDLF 182
P+ + Y+ D +
Sbjct: 244 PPNTVTYNTLIDAY 257
>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Cucumis sativus]
Length = 999
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 46/82 (56%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+F Y +++ L R KKV EAK + D+ + + + HT+G I +S SG A
Sbjct: 519 PDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERY 578
Query: 129 YNEMRSSPATPISLPFRVILKG 150
+ +M SS P ++ + +++KG
Sbjct: 579 FKDMLSSGIVPNNVIYTILIKG 600
Score = 37.4 bits (85), Expect = 3.1, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+P++F Y + L + V EA +V + + + + D HT+ ++ F EA
Sbjct: 273 KPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKL 332
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFRE--KVKDDFL 166
I+ M SS P + ++ G I E ++KD+ +
Sbjct: 333 IFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMI 373
>gi|359480144|ref|XP_002269420.2| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Vitis vinifera]
gi|297744374|emb|CBI37344.3| unnamed protein product [Vitis vinifera]
Length = 497
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
+K+++++R+++WYRP+ Y +++ML + K+ +A ++ + E + + + ++
Sbjct: 122 LKVFELLREQLWYRPNSGIYIKLIVMLGKCKQPEKAHALFLAMIDEGCVVNHEAYTALLS 181
Query: 115 AFSDSGLPSEAMFIYNEMRSSP-ATPISLPFRVILKGLIPYPEF 157
A+S SGL +A + +M+++P P + V++K + F
Sbjct: 182 AYSRSGLFDKAFSLLEKMKNTPDCQPDVHTYSVLIKSCLQVVAF 225
>gi|357498925|ref|XP_003619751.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494766|gb|AES75969.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 562
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 50/89 (56%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
K+ RP+MF Y ++ L + ++ +A+ ++EDL + +T+ +I F + GL
Sbjct: 459 KDQGIRPNMFTYTILIDGLCKGGRLEDARNIFEDLLVKGYNITVNTYTVMIHGFCNKGLF 518
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGL 151
EAM + ++M+ + P ++ + +I++ L
Sbjct: 519 DEAMTLLSKMKDNCCIPNAVTYEIIIRSL 547
>gi|224080263|ref|XP_002306075.1| predicted protein [Populus trichocarpa]
gi|222849039|gb|EEE86586.1| predicted protein [Populus trichocarpa]
Length = 498
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 84/193 (43%), Gaps = 32/193 (16%)
Query: 7 MVAKELKRLQSHPVRFDRFIKS-----------HVSRLLKSDLVS--------VLAEFQR 47
++ K + S P FD IKS + ++L+S +S +++E R
Sbjct: 152 VLVKSYRECDSAPFVFDLLIKSCLELKKIDGSIEIVKMLRSKGISPSISTCNALISEVSR 211
Query: 48 QDQVFLCMKLYDVV------------RKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWE 95
F+ ++ V R+ RP++ + ++++ RN +V +++W
Sbjct: 212 CKGSFVGYGVFKEVFGLESCELGEKMRRGFRVRPNVHSFNELMVGFYRNGEVEMVEEIWS 271
Query: 96 DLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYP 155
+++R + + ++G +I F + G SEA +++EMR P + + I+ G
Sbjct: 272 EMERFGCVANGFSYGVLIAVFCEGGRLSEAERLWDEMRVKGIMPDVVAYNTIIGGFCKAG 331
Query: 156 EFREKVKDDFLEL 168
E EK + F E+
Sbjct: 332 EV-EKAEGLFREM 343
>gi|224069806|ref|XP_002303044.1| predicted protein [Populus trichocarpa]
gi|222844770|gb|EEE82317.1| predicted protein [Populus trichocarpa]
Length = 485
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
+++++++R+++WYRP Y +++ML + K+ +A Q+++ + E ++ ++
Sbjct: 124 LEVFELLREQLWYRPYAGMYVKLIVMLGKCKQPDKAHQLFQAMIDEGCAVTHESYTALLS 183
Query: 115 AFSDSGLPSEAMFIYNEMRSSP-ATPISLPFRVILKGLI 152
A+ SGL +A I EM+++P P + +++K +
Sbjct: 184 AYGRSGLFDKAFSIMEEMKNTPDCRPDVHTYSILIKSCL 222
>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Cucumis sativus]
Length = 1032
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 46/82 (56%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+F Y +++ L R KKV EAK + D+ + + + HT+G I +S SG A
Sbjct: 519 PDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERY 578
Query: 129 YNEMRSSPATPISLPFRVILKG 150
+ +M SS P ++ + +++KG
Sbjct: 579 FKDMLSSGIVPNNVIYTILIKG 600
Score = 37.4 bits (85), Expect = 3.4, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+P++F Y + L + V EA +V + + + + D HT+ ++ F EA
Sbjct: 273 KPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKL 332
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFRE--KVKDDFL 166
I+ M SS P + ++ G I E ++KD+ +
Sbjct: 333 IFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMI 373
>gi|115466680|ref|NP_001056939.1| Os06g0172000 [Oryza sativa Japonica Group]
gi|55773690|dbj|BAD72273.1| putative PPR2 [Oryza sativa Japonica Group]
gi|113594979|dbj|BAF18853.1| Os06g0172000 [Oryza sativa Japonica Group]
gi|215697063|dbj|BAG91057.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218197679|gb|EEC80106.1| hypothetical protein OsI_21852 [Oryza sativa Indica Group]
gi|222635046|gb|EEE65178.1| hypothetical protein OsJ_20289 [Oryza sativa Japonica Group]
Length = 511
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 72/134 (53%), Gaps = 7/134 (5%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
+K++D++R ++WYRP + Y ++ ML + K+ A ++++ + E + ++ ++
Sbjct: 144 LKVFDLMRDQVWYRPYVGIYVKLITMLGKCKQPERAHELFQAMVDEGCAPNLESYTALVS 203
Query: 115 AFSDSGLPSEAMFIYNEMRSSPAT-PISLPFRVILKGLIPYPEFREKVK---DDFLE--L 168
A+S SG A + +M+++P P + +++K + +F E+VK +D +
Sbjct: 204 AYSRSGRFDRAFSLLEQMKATPGCRPDVQTYSILIKSCLHAYDF-ERVKYLMEDMARAGI 262
Query: 169 FPDMIVYDPPEDLF 182
P+++ Y+ D +
Sbjct: 263 RPNVVTYNTLIDAY 276
>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Glycine max]
Length = 742
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 39 VSVLAEFQRQDQVFLCMKLYD-VVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL 97
++++ F + V + KL+D + RK+I PD Y M+ L + KVVEA++++ ++
Sbjct: 361 TTLISGFGKSGNVSVEYKLFDEMKRKKI--VPDFVTYTSMIHGLCQAGKVVEARKLFSEM 418
Query: 98 KREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156
+ + D+ T+ +I + +G EA ++N+M TP + + ++ GL E
Sbjct: 419 LSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGE 477
Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD Y ++ ++ V ++++++KR++++ D T+ +I +G EA +
Sbjct: 355 PDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKL 414
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFRE--KVKDDFLE--LFPDMIVYDPPED 180
++EM S P + + ++ G E +E + + +E L P+++ Y D
Sbjct: 415 FSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVD 470
>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
Length = 716
Score = 50.1 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+F Y+ ML A +V+ +++ + + + D +TF +I+A+++ G+ +AM I
Sbjct: 361 PDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMII 420
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
+NEMR P + + ++ L R DD +E F MI
Sbjct: 421 FNEMRDHGVKPDVVTYTTVIAALC-----RIGKMDDAMEKFNQMI 460
>gi|9758872|dbj|BAB09426.1| unnamed protein product [Arabidopsis thaliana]
Length = 495
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
+++++++R+++WY+P++ Y +++ML + K+ +A ++++++ E + + + ++
Sbjct: 134 IQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVS 193
Query: 115 AFSDSGLPSEAMFIYNEMRSS-PATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
A+S SG A + M+SS P + +++K + F +KV+D L DM
Sbjct: 194 AYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAF-DKVQD----LLSDM 247
>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Glycine max]
Length = 892
Score = 49.7 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 5/110 (4%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
+ PD + + ++ L R +V EA Q+ E LK + V ++H + +I + +G A
Sbjct: 461 FSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAA 520
Query: 127 FIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176
++ M + P S+ F V++ GL KV+D L L DM +D
Sbjct: 521 SLFKRMLAEECLPNSITFNVMIDGL----RKEGKVQDAML-LVEDMAKFD 565
>gi|356523014|ref|XP_003530137.1| PREDICTED: uncharacterized protein LOC100799612 [Glycine max]
Length = 240
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 14/168 (8%)
Query: 1 MSKESLMVAKELKRLQ-SHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYD 59
+S E++ + LKRL ++P + + ++RL+KSDL++ L E RQ + ++ +
Sbjct: 47 LSIEAIQAIQTLKRLHRTNPPNLSSLVSNTLTRLIKSDLLATLRELLRQQHCTIALRAFS 106
Query: 60 VVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL------KREEVLFDQH-TFGDI 112
+R E Y D+ Y +++ LA E + L + EE+ D H +
Sbjct: 107 TLRSE--YGADLSLYAEIISALAAAAAAAEMTDHVDRLILDLEAENEEIKCDDHKGLASL 164
Query: 113 IRAFSDSGLPSEAMFIYNEMRSSPATPISLP----FRVILKGLIPYPE 156
I+A + + IY M+ S ++ P +V++ GL + E
Sbjct: 165 IKAVVAARSRESTVRIYGLMKKSGYGSVTEPDEYVVKVLVNGLKSFGE 212
>gi|297815036|ref|XP_002875401.1| hypothetical protein ARALYDRAFT_905030 [Arabidopsis lyrata subsp.
lyrata]
gi|297321239|gb|EFH51660.1| hypothetical protein ARALYDRAFT_905030 [Arabidopsis lyrata subsp.
lyrata]
Length = 220
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 4/136 (2%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+S E++ + LKR ++ + RL+KSDLVSVL E RQD L + +
Sbjct: 46 LSTEAIQSIQSLKRAHRTGSSISLTLRP-LRRLIKSDLVSVLRELLRQDYCTLAVHVLST 104
Query: 61 VRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119
+R E Y P D+ Y D++ L+RNK+ E ++ +++ + D +IRA +
Sbjct: 105 LRSE--YPPLDLVLYADIVNALSRNKEFDEIDRLIGEIEIIDQRSDDKALAKLIRAVVGA 162
Query: 120 GLPSEAMFIYNEMRSS 135
+ +Y +R S
Sbjct: 163 ERRESVVRVYTLLRES 178
>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
Length = 814
Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++F Y ML A +V+ +++ + + + D +TF +I+A+++ G+ +AM I
Sbjct: 357 PNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMII 416
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
+NEMR P + +R ++ L R DD +E F MI
Sbjct: 417 FNEMRDHGVKPDVVTYRTVIAALC-----RIGKMDDAMEKFNQMI 456
>gi|357127065|ref|XP_003565206.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Brachypodium distachyon]
Length = 257
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSH-------VSRLLKSDLVSVLAEFQRQDQVFL 53
+S E++ + LKRL + DR + + RLL++DL++ +AE QRQ L
Sbjct: 45 LSTEAIHAVQALKRLTA----ADRSPPAATAAASAALGRLLRADLLAAMAELQRQGHWSL 100
Query: 54 CMKLYDVVRKEIWYRPDMFFY 74
+ V R E WYRPD Y
Sbjct: 101 ALAALHVARAEPWYRPDPELY 121
>gi|297743170|emb|CBI36037.3| unnamed protein product [Vitis vinifera]
Length = 646
Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 56/109 (51%), Gaps = 5/109 (4%)
Query: 66 WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEA 125
Y+ D+F Y +L LA++ KV + V++D+KR+ D++T+ +IR G E+
Sbjct: 255 GYKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDEYTYTIMIRMTGKIGKADES 314
Query: 126 MFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174
+ ++ EM TP + + +++ L ++ D + LF M+V
Sbjct: 315 LTLFQEMTEKGYTPNLIAYNTMIQALA-----NNRMVDKTIFLFSKMVV 358
Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+F Y ++ R +V EA +++E+L+ D +F +I +G EA
Sbjct: 470 PDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMR 529
Query: 129 YNEMRSSPATPISLPFRVILK--GLIPYPEFREKVKDDFLE--LFPDMIVYDPPEDLFE 183
+ EMR +P + + +++ G E ++ D+ L P+++ Y+ D E
Sbjct: 530 FKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLE 588
>gi|297792071|ref|XP_002863920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297309755|gb|EFH40179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 498
Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 66/119 (55%), Gaps = 6/119 (5%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
+++++++R+++WY+P++ Y +++ML + K+ +A ++++++ E + + + ++
Sbjct: 137 LQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALLS 196
Query: 115 AFSDSGLPSEAMFIYNEMRSS-PATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
A+S SG A + M+SS P + +++K + F +KV D L DM
Sbjct: 197 AYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAF-DKVHD----LLSDM 250
>gi|255569835|ref|XP_002525881.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534795|gb|EEF36485.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 913
Score = 49.3 bits (116), Expect = 9e-04, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 17/130 (13%)
Query: 22 FDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMML 81
+D +K++VS + D + VL + R+ V P +F ++ L
Sbjct: 166 YDALVKAYVSVGMFDDAIDVLFQMGRRRFV-----------------PHIFICNFLMNSL 208
Query: 82 ARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPIS 141
+N K+ A V++ LKR + + +T+ +I+A +G EAM++ EM S TP
Sbjct: 209 IKNSKLDMALAVYKQLKRLGLSPNDYTYAIVIKALCINGSLEEAMYVIKEMEESGITPTG 268
Query: 142 LPFRVILKGL 151
+ ++GL
Sbjct: 269 FAYTAYIEGL 278
Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 44/82 (53%)
Query: 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIY 129
D+ Y ++ VV+A +V+E+++ + D T+ ++ F +GL +EA+ +
Sbjct: 442 DVMHYTTLINGYCCQGNVVDAFKVFEEMRENGIEIDVVTYDVLVSGFCRNGLATEALNLL 501
Query: 130 NEMRSSPATPISLPFRVILKGL 151
+ M++ P S+ + V+++ L
Sbjct: 502 DYMQTQKLKPNSITYNVVVESL 523
Score = 37.4 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 20/138 (14%)
Query: 57 LYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE---------EVLFDQH 107
++D++ K W PD+ Y M+ R + EA ++ D+K+ VL D H
Sbjct: 638 VFDMLLKRGW-TPDLIAYTIMITSYCRMNCLKEAVDLFHDMKQRGIKPDLVTFTVLLDGH 696
Query: 108 TFGDIIRAFSDSGLPS------EAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKV 161
I + +S + +A+ I+ EM+ + P + + V++ G + +
Sbjct: 697 HKAHIKKVYSAANAKGGNEDIFDALAIWTEMKDTEIKPDVIFYTVLIDGYCKVDSLHDAI 756
Query: 162 K--DDFLE--LFPDMIVY 175
D+ +E L PD+I Y
Sbjct: 757 GVFDEMIERGLEPDIITY 774
>gi|359482557|ref|XP_002277683.2| PREDICTED: pentatricopeptide repeat-containing protein At5g39710
[Vitis vinifera]
Length = 990
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
Y+ D+F Y +L LA++ KV + V++D+KR+ D++T+ +IR G E++
Sbjct: 73 YKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDEYTYTIMIRMTGKIGKADESL 132
Query: 127 FIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
++ EM TP + + +++ L ++ D + LF M+
Sbjct: 133 TLFQEMTEKGYTPNLIAYNTMIQALA-----NNRMVDKTIFLFSKMV 174
Score = 42.4 bits (98), Expect = 0.086, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 59/115 (51%), Gaps = 4/115 (3%)
Query: 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL 97
L+ LA+ + DQV++ K D+ RK PD + Y M+ M + K E+ +++++
Sbjct: 83 LLDALAKDNKVDQVYMVFK--DMKRKHC--EPDEYTYTIMIRMTGKIGKADESLTLFQEM 138
Query: 98 KREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
+ + + +I+A +++ + + +F++++M + P F VIL L+
Sbjct: 139 TEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMVENNCRPNGFTFSVILNVLV 193
Score = 38.9 bits (89), Expect = 0.97, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+F Y ++ R +V EA +++E+L+ D +F +I +G EA
Sbjct: 317 PDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMR 376
Query: 129 YNEMRSSPATPISLPFRVILK--GLIPYPEFREKVKDDFLE--LFPDMIVYDPPEDLFE 183
+ EMR +P + + +++ G E ++ D+ L P+++ Y+ D E
Sbjct: 377 FKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLE 435
>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 506
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
+E +P++ Y ++ +N K+ EA + +D+ ++VL + + II A+ + G
Sbjct: 287 QENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPN 346
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFR--EKVKDDFLE--LFPDMIVYD 176
+A + +M+S+ +P + + +++KGL + E++ + L PD + Y+
Sbjct: 347 DQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYN 404
>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
Length = 554
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
+E +P++ Y ++ +N K+ EA + +D+ ++VL + + II A+ + G
Sbjct: 335 QENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPN 394
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFR--EKVKDDFLE--LFPDMIVYD 176
+A + +M+S+ +P + + +++KGL + E++ + L PD + Y+
Sbjct: 395 DQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYN 452
>gi|222630937|gb|EEE63069.1| hypothetical protein OsJ_17877 [Oryza sativa Japonica Group]
Length = 702
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 4/128 (3%)
Query: 35 KSDLV---SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAK 91
K DLV S+LA + + +++D + K+ PD+ Y ++ M A++ + EA+
Sbjct: 507 KPDLVIFNSMLAMYAKNGLYSKATEMFDSI-KQSGLSPDLITYNSLMDMYAKSNESWEAE 565
Query: 92 QVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
++ + LK +V D ++ +I F GL EA I +EM + P + + ++ G
Sbjct: 566 KILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGY 625
Query: 152 IPYPEFRE 159
F E
Sbjct: 626 ASLEMFNE 633
Score = 42.7 bits (99), Expect = 0.066, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 52 FLCMKLYDVVR-----KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ 106
F C +L V + K Y+PD+ + ML M A+N +A ++++ +K+ + D
Sbjct: 486 FKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDL 545
Query: 107 HTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
T+ ++ ++ S EA I +++SS P + + ++ G
Sbjct: 546 ITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGF 590
>gi|357499031|ref|XP_003619804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494819|gb|AES76022.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 344
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 48/84 (57%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
RPDM+ Y + L ++ K+ +A++V+EDL + D +T+ +I+ F D GL EA+
Sbjct: 239 RPDMYTYTIFIKGLCQSGKLKDARKVFEDLLVKGYNLDVYTYTVMIQGFCDKGLFKEALA 298
Query: 128 IYNEMRSSPATPISLPFRVILKGL 151
+ ++M + P + + +++ L
Sbjct: 299 LLSKMEDNGCIPDAKIYEIVILSL 322
>gi|255553476|ref|XP_002517779.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543051|gb|EEF44586.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 486
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 49/80 (61%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
+K+++++RK+ WY P Y +LMML + ++ EA+ ++E ++ E + + ++
Sbjct: 112 LKIFELLRKQHWYEPRCQTYTKLLMMLGKCRQPEEARLLFEVMQTEGLRPTIDVYTALVS 171
Query: 115 AFSDSGLPSEAMFIYNEMRS 134
A+ +SGL ++A +EM+S
Sbjct: 172 AYGESGLLAKAFSTVDEMKS 191
>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
Length = 649
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 31/145 (21%), Positives = 70/145 (48%), Gaps = 9/145 (6%)
Query: 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL 97
+++ + RQ ++L+D + ++ RPD+ Y ++ + R + +A ++W+D+
Sbjct: 405 FTTLIHGYCRQGNFENALQLFDTLLRQ-RLRPDVVTYNSLIDGMCRKGDLAKANELWDDM 463
Query: 98 KREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG------L 151
E+L + T+ +I + + G +A +EM P + I+KG +
Sbjct: 464 HAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNV 523
Query: 152 IPYPEFREKVKDDFLELFPDMIVYD 176
+F +K++ D +FPD+I ++
Sbjct: 524 KKGQQFLQKMRQD--NVFPDLITFN 546
Score = 36.6 bits (83), Expect = 4.7, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 40/81 (49%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+P + Y +L L ++++ +AK+V+ + + V D +F +I F G EA+
Sbjct: 224 KPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVK 283
Query: 128 IYNEMRSSPATPISLPFRVIL 148
Y EM+ TP + F ++
Sbjct: 284 FYKEMQHRYVTPDVVSFSCLI 304
>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Glycine max]
Length = 757
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 44/161 (27%), Positives = 83/161 (51%), Gaps = 14/161 (8%)
Query: 26 IKSHVSRLLKSDLVS---VLAEFQRQDQVFLCMKLYD-VVRKEIWYRPDMFFYRDMLMML 81
++ V R L D+VS V+A F R+ ++ ++ + +V K + PD Y ++ L
Sbjct: 440 LRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVL--PDTVTYSSLIQGL 497
Query: 82 ARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPIS 141
+K+VEA ++ ++ R + D+ T+ +I A+ G S+A+ +++EM P +
Sbjct: 498 CLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDN 557
Query: 142 LPFRVILKGLIPYPEFREKV-KDDFLELF-----PDMIVYD 176
+ + V++ GL + R KV K L+LF PD + Y+
Sbjct: 558 VTYSVLINGL--NKKARTKVAKRLLLKLFYEESVPDDVTYN 596
>gi|125551633|gb|EAY97342.1| hypothetical protein OsI_19265 [Oryza sativa Indica Group]
Length = 793
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 4/128 (3%)
Query: 35 KSDLV---SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAK 91
K DLV S+LA + + +++D + K+ PD+ Y ++ M A++ + EA+
Sbjct: 598 KPDLVIFNSMLAMYAKNGLYSKATEMFDSI-KQSGLSPDLITYNSLMDMYAKSNESWEAE 656
Query: 92 QVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
++ + LK +V D ++ +I F GL EA I +EM + P + + ++ G
Sbjct: 657 KILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGY 716
Query: 152 IPYPEFRE 159
F E
Sbjct: 717 ASLEMFNE 724
Score = 42.7 bits (99), Expect = 0.077, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 52 FLCMKLYDVVR-----KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ 106
F C +L V + K Y+PD+ + ML M A+N +A ++++ +K+ + D
Sbjct: 577 FKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDL 636
Query: 107 HTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
T+ ++ ++ S EA I +++SS P + + ++ G
Sbjct: 637 ITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGF 681
>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
Length = 816
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+F Y ML A +V+ +++ + + + D +TF +I+A+++ G+ +AM I
Sbjct: 359 PDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMII 418
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
+NEMR P + + ++ L R DD +E F MI
Sbjct: 419 FNEMRDHGVKPHVVTYMTVIAALC-----RIGKMDDAMEKFNQMI 458
>gi|168019305|ref|XP_001762185.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686589|gb|EDQ72977.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 237
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 47/81 (58%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+ Y M+ + +R +V EAK +++ + + ++ D ++ +I F G +A+
Sbjct: 13 PDIVTYNTMIHICSRAGRVREAKSLFKKISEKGLVPDVASYNTLISMFIKRGEKQKALQY 72
Query: 129 YNEMRSSPATPISLPFRVILK 149
Y +M+++ TP ++ FR++LK
Sbjct: 73 YQKMKTAGVTPDTVTFRILLK 93
>gi|115462947|ref|NP_001055073.1| Os05g0275000 [Oryza sativa Japonica Group]
gi|50878350|gb|AAT85125.1| unknown protein, contains pentatricopeptide (PPR) repeat, PF01535
[Oryza sativa Japonica Group]
gi|113578624|dbj|BAF16987.1| Os05g0275000 [Oryza sativa Japonica Group]
gi|215695094|dbj|BAG90285.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 793
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 4/128 (3%)
Query: 35 KSDLV---SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAK 91
K DLV S+LA + + +++D + K+ PD+ Y ++ M A++ + EA+
Sbjct: 598 KPDLVIFNSMLAMYAKNGLYSKATEMFDSI-KQSGLSPDLITYNSLMDMYAKSNESWEAE 656
Query: 92 QVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
++ + LK +V D ++ +I F GL EA I +EM + P + + ++ G
Sbjct: 657 KILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGY 716
Query: 152 IPYPEFRE 159
F E
Sbjct: 717 ASLEMFNE 724
Score = 42.7 bits (99), Expect = 0.080, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 52 FLCMKLYDVVR-----KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ 106
F C +L V + K Y+PD+ + ML M A+N +A ++++ +K+ + D
Sbjct: 577 FKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDL 636
Query: 107 HTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
T+ ++ ++ S EA I +++SS P + + ++ G
Sbjct: 637 ITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGF 681
>gi|414888269|tpg|DAA64283.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
Length = 616
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 42/190 (22%), Positives = 84/190 (44%), Gaps = 17/190 (8%)
Query: 2 SKESLMVAKELKRLQSHPVR--FDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYD 59
++ S V + RL + P R R +++ RL D +V EF R+ ++L+
Sbjct: 68 ARNSYEVESLIDRLSNLPPRGSIARCLETARHRLTLQDFAAVYREFSRRGDWQRSLRLFK 127
Query: 60 VVRKEIWYRPDMFFYRDMLMMLARNKKVVEAK--QVWEDLKREEVLFDQHTFGDIIRAFS 117
++++ W RPD + ++ +L R + K +V+ DL E +T +I A++
Sbjct: 128 YMQRQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFHDLPAESRTALSYT--SLIAAYA 185
Query: 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL-------IPYPE----FREKVKDDFL 166
+ L EA + ++M+++ P + + +L +P+ F E D
Sbjct: 186 RNALHEEARALLDQMKATGVAPTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHDASP 245
Query: 167 ELFPDMIVYD 176
+ PD+ Y+
Sbjct: 246 SVRPDLTTYN 255
>gi|168019209|ref|XP_001762137.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686541|gb|EDQ72929.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 513
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 72/152 (47%), Gaps = 18/152 (11%)
Query: 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWED 96
DL+ +AEF+RQ + + +Y+ + + ++PD+ + ++ R K+ EA+ +
Sbjct: 67 DLMETVAEFRRQRKWRSAIVIYEWILQGSMFKPDVGCFNMLMDAYGRTKQWTEAENTFHL 126
Query: 97 LKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156
+K+ + L + +F ++ A+S G A + +EM+ S +P GL+ Y
Sbjct: 127 MKKFQCLPTETSFNVLMAAYSRGGQLERAERVLHEMKESNCSP----------GLVTY-- 174
Query: 157 FREKVKDDFLELFPDMIVYDPPEDLFEDQEWR 188
+ +LE+ + ED+F + + R
Sbjct: 175 ------NTYLEVLNKSGSWQLAEDVFREMQNR 200
Score = 43.9 bits (102), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 18 HPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVR--KEIWYRPDMFFYR 75
H + + +S L L + A + C++ ++ + + + PD++ Y
Sbjct: 221 HSAKAEHLFQSMRKALCPPSLFTYTALINAHAREGNCVRAEEIFAELQSVGFVPDIYTYN 280
Query: 76 DMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133
+L +R AK+V+E + V D ++ +I AF +GL S+A IY+ M+
Sbjct: 281 ALLEAYSRGGHPAGAKEVFETMLEAGVKADHVSYNILIDAFGRAGLISDAQAIYDSMK 338
>gi|302768589|ref|XP_002967714.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
gi|300164452|gb|EFJ31061.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
Length = 384
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 78/151 (51%), Gaps = 6/151 (3%)
Query: 22 FDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMML 81
F R +K + + V + +++ ++ ++L +V+ KE +PD Y ++ L
Sbjct: 5 FYRMMKDGCEATVVTYTVIIHGYLRQKSKLDHALRLLEVM-KESGKKPDEILYNCLVNGL 63
Query: 82 ARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPIS 141
+ ++ A+++ +D+KR++V + T+ ++I+ ++++G + ++ EM+ +P S
Sbjct: 64 VNSGRLEAAEKILDDMKRDKVSANLVTYTNLIKEYANTGRLQDCRKLFQEMKDKGESPNS 123
Query: 142 LPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
+ +++G F+E LEL+ +M
Sbjct: 124 WTYNALIQGYGRKGLFKEA-----LELYDEM 149
>gi|414888270|tpg|DAA64284.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
Length = 890
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 42/190 (22%), Positives = 84/190 (44%), Gaps = 17/190 (8%)
Query: 2 SKESLMVAKELKRLQSHPVR--FDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYD 59
++ S V + RL + P R R +++ RL D +V EF R+ ++L+
Sbjct: 90 ARNSYEVESLIDRLSNLPPRGSIARCLETARHRLTLQDFAAVYREFSRRGDWQRSLRLFK 149
Query: 60 VVRKEIWYRPDMFFYRDMLMMLARNKKVVEAK--QVWEDLKREEVLFDQHTFGDIIRAFS 117
++++ W RPD + ++ +L R + K +V+ DL E +T +I A++
Sbjct: 150 YMQRQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFHDLPAESRTALSYT--SLIAAYA 207
Query: 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL-------IPYPE----FREKVKDDFL 166
+ L EA + ++M+++ P + + +L +P+ F E D
Sbjct: 208 RNALHEEARALLDQMKATGVAPTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHDASP 267
Query: 167 ELFPDMIVYD 176
+ PD+ Y+
Sbjct: 268 SVRPDLTTYN 277
>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
Length = 751
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 37/158 (23%), Positives = 76/158 (48%), Gaps = 10/158 (6%)
Query: 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWE 95
S +++ +Q D+ F ++V K + PD Y ++ L +++ EA +++
Sbjct: 452 STIIAGFCRYQELDRAFQMNA--EMVEKGV--SPDAITYSSLIQGLCEQRRLNEACDLFQ 507
Query: 96 DLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYP 155
++ + +L D+ T+ +I + G +EA+ +++EM P ++ + V++ GL
Sbjct: 508 EMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQA 567
Query: 156 EFREKVKDDFLELF-----PDMIVYDPPEDLFEDQEWR 188
RE K L+LF P+ I YD + D E++
Sbjct: 568 RTRE-AKRLLLKLFYDESIPNGITYDTLIESCSDIEFK 604
>gi|297724097|ref|NP_001174412.1| Os05g0393900 [Oryza sativa Japonica Group]
gi|255676341|dbj|BAH93140.1| Os05g0393900 [Oryza sativa Japonica Group]
Length = 553
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 10/131 (7%)
Query: 58 YDVVRKEI--WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
Y+VVR + PD+ Y ++ L +V EA V + + E + HT+ I+ A
Sbjct: 158 YEVVRWMVANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHA 217
Query: 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLE------LF 169
+ G EA + N M +S P + + V+++ L F E D LE
Sbjct: 218 YCTGGRIHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEE--VDALLEESTAKGWT 275
Query: 170 PDMIVYDPPED 180
PD+I Y D
Sbjct: 276 PDVITYSSYMD 286
>gi|297826581|ref|XP_002881173.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327012|gb|EFH57432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 917
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 24 RFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRK--EIWYRPDMFFYRDMLMML 81
R++ + R+ + L+S+ + R ++ D++R+ + + D+ Y +L
Sbjct: 436 RYLNIALDRVSYNTLLSIYTKVGRSEEAL------DILREMASVGIKKDVVTYNALLGGY 489
Query: 82 ARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135
+ K E K+V+ ++KRE VL + T+ +I +S GL EAM ++ E +S+
Sbjct: 490 GKQGKYDEVKKVFAEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKSA 543
>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g31400, chloroplastic; Flags: Precursor
gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
Length = 918
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 24 RFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRK--EIWYRPDMFFYRDMLMML 81
R++ + R+ + L+S+ + R ++ D++R+ + + D+ Y +L
Sbjct: 436 RYLGIALDRVSYNTLLSIYTKVGRSEEAL------DILREMASVGIKKDVVTYNALLGGY 489
Query: 82 ARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135
+ K E K+V+ ++KRE VL + T+ +I +S GL EAM I+ E +S+
Sbjct: 490 GKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSA 543
>gi|357499677|ref|XP_003620127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495142|gb|AES76345.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 412
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 59/116 (50%), Gaps = 4/116 (3%)
Query: 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWE 95
S L+ L + + D+ +K K+ RP+M+ Y ++ L + ++ +A ++E
Sbjct: 279 SSLLDALCKNHQVDKAIALLKNL----KDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFE 334
Query: 96 DLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
DL + +T+ +I F + GL EA+ + ++M+ + P +L + +I++ L
Sbjct: 335 DLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCFPNALTYEIIIRSL 390
>gi|168049914|ref|XP_001777406.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671255|gb|EDQ57810.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 570
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 45/83 (54%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD Y M+ + + K EA ++E +K+ D+ T+G ++R F +G S A+ I
Sbjct: 111 PDAVTYSTMIDVYGKVGKYDEAVALYESVKKSGWKPDKVTYGTMVRLFGRAGYISAAVSI 170
Query: 129 YNEMRSSPATPISLPFRVILKGL 151
++EM+ S P S+ + +++ L
Sbjct: 171 FDEMKGSGIQPGSVVYNIMISCL 193
>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
Length = 649
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 66/144 (45%), Gaps = 9/144 (6%)
Query: 39 VSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLK 98
+++ + R ++L+D + + RPD+ Y ++ + R + +A ++W+D+
Sbjct: 406 TTLIHGYCRDGNFEKALQLFDTLLHQ-RLRPDVVAYNSLIDGMCRKGDLAKANELWDDMH 464
Query: 99 REEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI------ 152
E+ + T+ +I + + G EA +EM S P + + I+KG
Sbjct: 465 AREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVK 524
Query: 153 PYPEFREKVKDDFLELFPDMIVYD 176
+F +K+ D + PD+I ++
Sbjct: 525 KGQQFLQKMMQD--NILPDLITFN 546
Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 16/118 (13%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+P + + +L L ++++ +AK+V+ + + V D +F +I F G EAM
Sbjct: 224 KPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMK 283
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDF----------LELFPDMIVY 175
Y EM+ TP + F ++ GL F + K D L L PD ++Y
Sbjct: 284 FYKEMQQRGVTPDVVSFSCLI-GL-----FSTRGKMDHAAAYLREMKGLGLVPDGVIY 335
>gi|414888268|tpg|DAA64282.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
Length = 868
Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 42/190 (22%), Positives = 84/190 (44%), Gaps = 17/190 (8%)
Query: 2 SKESLMVAKELKRLQSHPVR--FDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYD 59
++ S V + RL + P R R +++ RL D +V EF R+ ++L+
Sbjct: 68 ARNSYEVESLIDRLSNLPPRGSIARCLETARHRLTLQDFAAVYREFSRRGDWQRSLRLFK 127
Query: 60 VVRKEIWYRPDMFFYRDMLMMLARNKKVVEAK--QVWEDLKREEVLFDQHTFGDIIRAFS 117
++++ W RPD + ++ +L R + K +V+ DL E +T +I A++
Sbjct: 128 YMQRQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFHDLPAESRTALSYT--SLIAAYA 185
Query: 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL-------IPYPE----FREKVKDDFL 166
+ L EA + ++M+++ P + + +L +P+ F E D
Sbjct: 186 RNALHEEARALLDQMKATGVAPTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHDASP 245
Query: 167 ELFPDMIVYD 176
+ PD+ Y+
Sbjct: 246 SVRPDLTTYN 255
>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Brachypodium distachyon]
Length = 686
Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 34/144 (23%), Positives = 73/144 (50%), Gaps = 11/144 (7%)
Query: 40 SVLAEFQRQDQVFLC-MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLK 98
+++ + R Q+ C + L D+ K + +P++ Y ++ +N K++EA + +D+
Sbjct: 438 TLIDAYGRAGQLEKCFIILSDMQEKGL--KPNVVSYGSIVNAFCKNGKILEAVAILDDMF 495
Query: 99 REEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFR 158
++VL + II A+ + G +A + +M+SS P + + +++KGL +
Sbjct: 496 IKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQIS 555
Query: 159 EKVKDDFLE------LFPDMIVYD 176
E ++ L+ L PD+I Y+
Sbjct: 556 E--AEELLDSLRNYGLAPDVISYN 577
>gi|414888267|tpg|DAA64281.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
Length = 873
Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 42/190 (22%), Positives = 84/190 (44%), Gaps = 17/190 (8%)
Query: 2 SKESLMVAKELKRLQSHPVR--FDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYD 59
++ S V + RL + P R R +++ RL D +V EF R+ ++L+
Sbjct: 68 ARNSYEVESLIDRLSNLPPRGSIARCLETARHRLTLQDFAAVYREFSRRGDWQRSLRLFK 127
Query: 60 VVRKEIWYRPDMFFYRDMLMMLARNKKVVEAK--QVWEDLKREEVLFDQHTFGDIIRAFS 117
++++ W RPD + ++ +L R + K +V+ DL E +T +I A++
Sbjct: 128 YMQRQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFHDLPAESRTALSYT--SLIAAYA 185
Query: 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL-------IPYPE----FREKVKDDFL 166
+ L EA + ++M+++ P + + +L +P+ F E D
Sbjct: 186 RNALHEEARALLDQMKATGVAPTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHDASP 245
Query: 167 ELFPDMIVYD 176
+ PD+ Y+
Sbjct: 246 SVRPDLTTYN 255
>gi|359482689|ref|XP_003632809.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Vitis vinifera]
Length = 879
Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 6/107 (5%)
Query: 24 RFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLA 82
RF +S V L SD+ ++ R V L +K +D V + + P + F Y +L +LA
Sbjct: 51 RFSESEV---LASDVAHLV--LDRIRDVELGLKFFDWVSRGQYSGPINGFAYSSLLKLLA 105
Query: 83 RNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIY 129
R++ E + V E+++ EE+ + +I+A+SDSGL +A+ +Y
Sbjct: 106 RSRVFSEMEVVLENMRVEEMSPTREAMSIVIQAYSDSGLVEKALELY 152
>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 17/137 (12%)
Query: 15 LQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFY 74
Q + F+ IK H +R F +VF +K+ + V PD+ +
Sbjct: 427 CQPNICTFNALIKMHGNR----------GNFVEMMKVFEEIKICECV-------PDIVTW 469
Query: 75 RDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS 134
+L + +N E V++++KR + ++ TF +I A+S G +AM IY M
Sbjct: 470 NTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLD 529
Query: 135 SPATPISLPFRVILKGL 151
+ TP + +L L
Sbjct: 530 AGVTPDLSTYNAVLAAL 546
>gi|356525427|ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial-like [Glycine max]
Length = 521
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 63/126 (50%), Gaps = 4/126 (3%)
Query: 30 VSRLLKSDLVS---VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKK 86
+ ++ D+V+ ++ F R+ + KL D + K + PD FY ++ L +N K
Sbjct: 356 CGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTK-MRVLPDCIFYTAVVDHLCKNGK 414
Query: 87 VVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRV 146
V A V+ D+ V D ++ ++ F + +AM +++EM+S P + +++
Sbjct: 415 VDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYPDEVTYKL 474
Query: 147 ILKGLI 152
I+ GLI
Sbjct: 475 IVGGLI 480
>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 17/137 (12%)
Query: 15 LQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFY 74
Q + F+ IK H +R F +VF +K+ + V PD+ +
Sbjct: 427 CQPNICTFNALIKMHGNR----------GNFVEMMKVFEEIKICECV-------PDIVTW 469
Query: 75 RDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS 134
+L + +N E V++++KR + ++ TF +I A+S G +AM IY M
Sbjct: 470 NTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLD 529
Query: 135 SPATPISLPFRVILKGL 151
+ TP + +L L
Sbjct: 530 AGVTPDLSTYNAVLAAL 546
>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
lyrata]
gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
lyrata]
Length = 1114
Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL 97
+++ L +F R ++ + L++ ++K PD++ Y +++ L V EA +++ ++
Sbjct: 1004 IINGLGKFHRLEEALV---LFNEMKKSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEI 1060
Query: 98 KREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
+R + + TF +IR +S SG P A +Y M + +P
Sbjct: 1061 QRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSP 1102
Score = 39.3 bits (90), Expect = 0.81, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 68/151 (45%), Gaps = 5/151 (3%)
Query: 23 DRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLA 82
+R + + + R S LV ++ + + L++ K++ +P + Y ++ L
Sbjct: 739 ERLVANGICRDGDSILVPIIRYSFKHNNASGARMLFEKFTKDLGVQPKLPTYNLLIGGLL 798
Query: 83 RNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISL 142
+ A+ V+ +K + D T+ ++ A+ SG E IY EM + P ++
Sbjct: 799 EADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTI 858
Query: 143 PFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
+++ GL+ + DD L+L+ D++
Sbjct: 859 THNIVISGLV-----KAGNVDDALDLYYDLM 884
Score = 37.7 bits (86), Expect = 2.7, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
++PD Y +L + N+ + Q W +++++ + D TF ++ A +G EA
Sbjct: 326 HKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAF 385
Query: 127 FIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
+ MR P + ++ GL+ R DD LE+F +M
Sbjct: 386 AKLDVMRDQGILPNLHTYNTLICGLL-----RVHRLDDALEIFDNM 426
>gi|413953500|gb|AFW86149.1| hypothetical protein ZEAMMB73_846563 [Zea mays]
Length = 1039
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 77/157 (49%), Gaps = 9/157 (5%)
Query: 11 ELKRLQSHPVRFDRFIKSHVSRLLKS--DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYR 68
E +L S +DR + S VS+ +++ ++SV + + D+ ++++ +E+
Sbjct: 758 ESGKLHSAVSIYDRMVSSGVSQSMQTFNTMISVYGKGGKLDKA---VEMFAAA-QELGLP 813
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
D Y +ML + + + EA +++ +K + + + +F +I A++ SGL SEA +
Sbjct: 814 IDEKMYTNMLSLYGKAGRHQEASLMFKRMKEDGIRPGKISFNSMINAYATSGLFSEAKSV 873
Query: 129 YNEMRSSPATPISLPFRVILKGLIP---YPEFREKVK 162
+ EM+ P S + +++ Y E E ++
Sbjct: 874 FQEMQDCGHAPDSFSYLALIRAYTEAKLYTEAEEAIR 910
>gi|302781402|ref|XP_002972475.1| hypothetical protein SELMODRAFT_97561 [Selaginella moellendorffii]
gi|300159942|gb|EFJ26561.1| hypothetical protein SELMODRAFT_97561 [Selaginella moellendorffii]
Length = 406
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL 97
L+ +L + + D+ + C + + + ++PD+F Y +L L R +V V +D+
Sbjct: 264 LIDLLGKVGKIDECWSCYQ-----KMRLHFQPDIFSYNTLLGRLGRAGRVDLFASVLDDM 318
Query: 98 KREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEF 157
R+ V D+ T+ ++ ++ +G A+ EM+SS +P V++ L+ F
Sbjct: 319 SRDGVQQDRITYAILVEGYARAGNLDVALAYLEEMKSSGFSPTPSALEVLVNSLLKAGRF 378
>gi|356557209|ref|XP_003546910.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g80880, mitochondrial-like [Glycine max]
Length = 504
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 3/128 (2%)
Query: 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100
+++ F ++ +F ++LYD ++K W P + Y ++ +L + EA + + LK +
Sbjct: 269 MISCFSKEGNLFDSLRLYDQMKKRGWI-PGIEIYNSLVYVLTHENCLKEALRTIDKLKEQ 327
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL--IPYPEFR 158
+ TF +I + ++G +EA I+N M +P + + +G EF
Sbjct: 328 GLQPGSVTFNSMILSLCEAGKLAEARIIFNSMVEENVSPTTETYHAFFEGTDYQGTLEFL 387
Query: 159 EKVKDDFL 166
++KD L
Sbjct: 388 TRMKDSGL 395
>gi|222622462|gb|EEE56594.1| hypothetical protein OsJ_05954 [Oryza sativa Japonica Group]
Length = 579
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Query: 47 RQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ 106
R +V ++Y+ +R++ Y+ D+F Y +L LA+ V +A QV+ED+K++ + D
Sbjct: 140 RSREVSKGFQVYEEMRRK-GYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHCVPDA 198
Query: 107 HTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+T+ +IR +G S+ + ++EM S + F I++ L
Sbjct: 199 YTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEAL 243
Score = 36.6 bits (83), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 12/122 (9%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD+ Y ++ L ++ + EA ++++++ + D T+ +I F S A
Sbjct: 437 KPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACS 496
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDF--------LELFPDMIVYDPPE 179
+++EM S TP + + ++L L E R K ++ L PD I Y E
Sbjct: 497 LFDEMISEGCTPNIVTYNILLDCL----ERRGKTEEAHKLYETMKQQGLIPDSITYSILE 552
Query: 180 DL 181
L
Sbjct: 553 RL 554
>gi|27545040|gb|AAO18446.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
Group]
gi|108711829|gb|ABF99624.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 863
Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 17/187 (9%)
Query: 5 SLMVAKELKRLQSHPVR--FDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVR 62
S V + RL + P R R +++ RL D +V EF R+ ++L+ ++
Sbjct: 66 SYEVESLIDRLSNLPPRGSIARCLETARHRLTLQDFAAVYREFSRRGDWQRSLRLFKYMQ 125
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAK--QVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
++ W RPD + ++ +L R + K +V+ DL E +T +I A++ +
Sbjct: 126 RQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFHDLPSESRTALSYT--SLIAAYARNA 183
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGL-------IPYPE----FREKVKDDFLELF 169
L EA + ++M++S P + + +L +P+ F E D +
Sbjct: 184 LHEEARELLDQMKASGVAPTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHDPSPSVR 243
Query: 170 PDMIVYD 176
PD+ Y+
Sbjct: 244 PDLTTYN 250
>gi|218190347|gb|EEC72774.1| hypothetical protein OsI_06434 [Oryza sativa Indica Group]
Length = 579
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Query: 47 RQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ 106
R +V ++Y+ +R++ Y+ D+F Y +L LA+ V +A QV+ED+K++ + D
Sbjct: 140 RSREVSKGFQVYEEMRRK-GYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHCVPDA 198
Query: 107 HTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+T+ +IR +G S+ + ++EM S + F I++ L
Sbjct: 199 YTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEAL 243
Score = 36.6 bits (83), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 12/122 (9%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD+ Y ++ L ++ + EA ++++++ + D T+ +I F S A
Sbjct: 437 KPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACS 496
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDF--------LELFPDMIVYDPPE 179
+++EM S TP + + ++L L E R K ++ L PD I Y E
Sbjct: 497 LFDEMISEGCTPNIVTYNILLDCL----ERRGKTEEAHKLYETMKQQGLIPDSITYSILE 552
Query: 180 DL 181
L
Sbjct: 553 RL 554
>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 716
Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 8/125 (6%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD+ Y ++ + ++ +AK++W D+ E+ +F +I F GL SEA
Sbjct: 501 KPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFR 560
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELF------PDMIVYDPPEDL 181
+++EM+ P + I+KG + + +DFL PD I Y+ +
Sbjct: 561 LWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSK--ANDFLNTMISEGVPPDCITYNTLINS 618
Query: 182 FEDQE 186
F +E
Sbjct: 619 FVKEE 623
>gi|297743431|emb|CBI36298.3| unnamed protein product [Vitis vinifera]
Length = 641
Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 31 SRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVE 89
S +L SD+ ++ R V L +K +D V + + P + F Y +L +LAR++ E
Sbjct: 55 SEVLASDVAHLV--LDRIRDVELGLKFFDWVSRGQYSGPINGFAYSSLLKLLARSRVFSE 112
Query: 90 AKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIY 129
+ V E+++ EE+ + +I+A+SDSGL +A+ +Y
Sbjct: 113 MEVVLENMRVEEMSPTREAMSIVIQAYSDSGLVEKALELY 152
>gi|222631493|gb|EEE63625.1| hypothetical protein OsJ_18442 [Oryza sativa Japonica Group]
Length = 390
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 8/118 (6%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+ Y ++ L +V EA V + + E + HT+ I+ A+ G EA +
Sbjct: 8 PDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGRIHEAKRL 67
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLE------LFPDMIVYDPPED 180
N M +S P + + V+++ L F E D LE PD+I Y D
Sbjct: 68 LNTMIASGFAPSTATYNVLVEALCKVGAFEE--VDALLEESTAKGWTPDVITYSSYMD 123
>gi|168000146|ref|XP_001752777.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695940|gb|EDQ82281.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 694
Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
RP++F Y +L +L N A + E+++ + D T +I + G P EA+
Sbjct: 182 RPNVFTYNSLLGVLKANHCYEMATMILEEMRENGISSDIVTCNTVISMYEQQGRPDEALK 241
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
+Y ++R++ P +R +++ L R + LEL+ D++
Sbjct: 242 VYEDLRTTGMVPDLFTYRTMIQALA-----RSGKCERVLELYRDLV 282
Score = 36.2 bits (82), Expect = 7.8, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 34 LKSDLVS---VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEA 90
+ SD+V+ V++ +++Q + +K+Y+ +R PD+F YR M+ LAR+ K
Sbjct: 216 ISSDIVTCNTVISMYEQQGRPDEALKVYEDLRT-TGMVPDLFTYRTMIQALARSGKCERV 274
Query: 91 KQVWEDLKREE 101
+++ DL +E
Sbjct: 275 LELYRDLVHQE 285
>gi|168002263|ref|XP_001753833.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694809|gb|EDQ81155.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 779
Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 63/123 (51%)
Query: 26 IKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNK 85
++ + ++L +D + EF ++ ++L+ +++ W +P+ Y M+ ++ R
Sbjct: 29 MEGYRNKLTINDFSLIFREFAQRSDWQKALRLFKYMQRHQWCKPNEHVYTIMIGIMGREG 88
Query: 86 KVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFR 145
+ +A +++ED+ +V ++ ++F +I A+ +G ++ + M+ TP + +
Sbjct: 89 MLDKASELFEDMPLNDVEWNVYSFTALINAYGRNGQHEASLHLLARMKREKVTPNLITYN 148
Query: 146 VIL 148
++
Sbjct: 149 TVI 151
>gi|115445137|ref|NP_001046348.1| Os02g0226900 [Oryza sativa Japonica Group]
gi|49388538|dbj|BAD25660.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|49388672|dbj|BAD25856.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535879|dbj|BAF08262.1| Os02g0226900 [Oryza sativa Japonica Group]
Length = 637
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Query: 47 RQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ 106
R +V ++Y+ +R++ Y+ D+F Y +L LA+ V +A QV+ED+K++ + D
Sbjct: 198 RSREVSKGFQVYEEMRRK-GYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHCVPDA 256
Query: 107 HTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+T+ +IR +G S+ + ++EM S + F I++ L
Sbjct: 257 YTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEAL 301
Score = 36.6 bits (83), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 12/122 (9%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD+ Y ++ L ++ + EA ++++++ + D T+ +I F S A
Sbjct: 495 KPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACS 554
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDF--------LELFPDMIVYDPPE 179
+++EM S TP + + ++L L E R K ++ L PD I Y E
Sbjct: 555 LFDEMISEGCTPNIVTYNILLDCL----ERRGKTEEAHKLYETMKQQGLIPDSITYSILE 610
Query: 180 DL 181
L
Sbjct: 611 RL 612
>gi|224074009|ref|XP_002304213.1| predicted protein [Populus trichocarpa]
gi|222841645|gb|EEE79192.1| predicted protein [Populus trichocarpa]
Length = 190
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+S E+++ + LKR ++ + + +++R+++SDL+S++ E RQD L +++
Sbjct: 22 LSTEAILAIQSLKRADNNKSESSKKL-PNLARMIRSDLLSIIRELLRQDLCSLALQVLST 80
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNK 85
+R E + D+ Y D++ L+RNK
Sbjct: 81 LRSEYPGQIDLNLYADVIFALSRNK 105
>gi|225445222|ref|XP_002280919.1| PREDICTED: pentatricopeptide repeat-containing protein At5g21222
[Vitis vinifera]
gi|297738818|emb|CBI28063.3| unnamed protein product [Vitis vinifera]
Length = 636
Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 41/84 (48%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
+RP + Y +L L R K+ + L++ + D F +I AFS+SG EAM
Sbjct: 102 HRPTLITYTTLLAALTRQKRFKSIPSLISKLEKNGLKPDSVFFNAMINAFSESGNVKEAM 161
Query: 127 FIYNEMRSSPATPISLPFRVILKG 150
I+ +M+ P + F ++KG
Sbjct: 162 KIFRKMKDRGCKPTTSTFNTLIKG 185
>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 543
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 49/89 (55%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
K+ RP+M+ Y ++ L + ++ +A ++EDL + +T+ +I F + GL
Sbjct: 434 KDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLF 493
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGL 151
EA+ + ++M+ + P ++ + +I++ L
Sbjct: 494 DEALALLSKMKDNSCIPDAVTYEIIIRSL 522
>gi|357167657|ref|XP_003581270.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Brachypodium distachyon]
Length = 560
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF-DQHTFGDIIRAFSDSGL 121
E PD ++ L R K+V ++V L+R+ V + T+ +I + SG
Sbjct: 255 AEFGCSPDTVTNNILVGGLCRVKEVSRGREVLRRLQRDGVCMPNVVTYTSVISGYCKSGR 314
Query: 122 PSEAMFIYNEMRSSPATPISLPFRVILKG 150
+AM +YN+M TP ++ + V++ G
Sbjct: 315 MEDAMAVYNDMIGCGTTPNAVTYNVLING 343
>gi|222624701|gb|EEE58833.1| hypothetical protein OsJ_10405 [Oryza sativa Japonica Group]
Length = 483
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 73/160 (45%), Gaps = 7/160 (4%)
Query: 5 SLMVAKELKRLQSHPVRFDRFIKSHVSRL-LKSDLVS---VLAEFQRQDQVFLCMKLYDV 60
++ V L + +H ++ + H+ L + DL S +L + L ++Y+
Sbjct: 96 NVYVFNSLMNVNAHSFSYNFSVYKHMQNLGVPPDLTSYNILLKTCCNAKEYKLAQEIYEE 155
Query: 61 VRKE---IWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117
++K+ + D+F Y M+ + A K A + +D++ V + T+ +I A++
Sbjct: 156 IKKKEQNGLLKLDVFTYSTMMKVFADAKMWKLASDIKQDMQSAGVRLNLVTWSSLINAYA 215
Query: 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEF 157
+SGL A+ I EM P + F +IL G + ++
Sbjct: 216 NSGLVDRAIEILEEMTRDGCQPTAPCFNIILTGCVKSCQY 255
>gi|359492929|ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Vitis vinifera]
Length = 513
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 3/136 (2%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
+++ F ++V +K+ + ++K P++F Y ++ + ++ EAK+V++++K
Sbjct: 277 ALINGFCHGEKVDRALKIMEFMKKN-GCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKS 335
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
+ D + +I F +G EAM + +MR + ++ F VIL GL F E
Sbjct: 336 LGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMRENKCRADTVTFNVILGGLCREGRFEE 395
Query: 160 KVKDDFLELFPDMIVY 175
LE P VY
Sbjct: 396 --ARGMLERLPYEGVY 409
>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 729
Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 46/82 (56%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD YR +LM + VVE ++V+ D++ +V+ D F ++ F+ SG +A+
Sbjct: 338 PDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMY 397
Query: 129 YNEMRSSPATPISLPFRVILKG 150
+N ++ + P ++ + ++++G
Sbjct: 398 FNSVKEAGLIPDNVIYTILIQG 419
Score = 38.1 bits (87), Expect = 2.0, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 42/88 (47%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
KE R D+ Y +L + + AK++W D+ +E+L ++ ++ A G
Sbjct: 507 KEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHL 566
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKG 150
+EA +++EM S P + ++KG
Sbjct: 567 AEAFRVWDEMISKNIKPTVMICNSMIKG 594
>gi|357110688|ref|XP_003557148.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27270-like [Brachypodium distachyon]
Length = 1038
Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 71/142 (50%), Gaps = 9/142 (6%)
Query: 23 DRFIKSHVSRLLKS--DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMM 80
DR I S + + L++ ++SV + + D+ +++ +E+ R D Y +ML
Sbjct: 771 DRMISSGIPQSLQTFNIMISVYGQGGKLDKA---TEMFTAA-QELGLRIDEKTYTNMLSF 826
Query: 81 LARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPI 140
+ + +A ++ +K E ++ + +F ++ ++ SGL +A FI+ EM+SS P
Sbjct: 827 YGKAGRHQDASVLFTRMKEEGIMPGKISFNSMVNVYATSGLHDKAKFIFEEMQSSGQIPE 886
Query: 141 SLPFRVILKGLIPYPEFREKVK 162
SL + ++K Y E R K
Sbjct: 887 SLTYLALIKA---YTEGRSYSK 905
Score = 37.0 bits (84), Expect = 3.8, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 34/71 (47%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P+ F Y ++ + + EA VW +KR + ++ T+ +I + G +A+ +
Sbjct: 278 PNQFTYTIVIGSYVKESLLEEAMNVWRKMKRSRFVPEEATYSGLISLSARHGRGEQALGL 337
Query: 129 YNEMRSSPATP 139
Y EMR+ P
Sbjct: 338 YEEMRAHGIVP 348
>gi|356521196|ref|XP_003529243.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
chloroplastic-like [Glycine max]
Length = 601
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
+++ + R +V MKL + KE +P+++ Y ++ M R+K + + +++W+++KR
Sbjct: 437 TMIVMYGRTGRVRSAMKLVAKM-KERGCKPNVWIYNSLIDMHGRDKNLKQLEKLWKEMKR 495
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133
V D+ ++ II A+S +G + ++NE R
Sbjct: 496 RRVAPDKVSYTSIIGAYSKAGEFETCVKLFNEYR 529
>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 517
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 60/112 (53%), Gaps = 1/112 (0%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
S+L + QV + L ++ + +P+M+ Y ++ L ++ K+ +A++V+EDL
Sbjct: 322 SILDALCKNHQVDNAIALLTQMKNQ-GIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLV 380
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+ + +T+ +I+ F D GL EA+ + ++M + P + + +I+ L
Sbjct: 381 KGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSL 432
>gi|147742767|gb|ABQ50548.1| hypothetical protein [Brassica rapa]
Length = 229
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 56 KLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
++ DVV PD+ + ++ + K V E +V+ ++ ++ D T+ +++
Sbjct: 31 QMVDVVMVSKGCDPDIVTFNILINGYCKAKLVDEGMRVFREISLRGLVADTVTYNTLVQG 90
Query: 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLE 167
F ++G A ++ EM S A P + +R++L GL E +E + D LE
Sbjct: 91 FCEAGKLDVAKELFQEMVSQGARPDIVTYRILLDGLCDNGELQEAL--DILE 140
>gi|15231160|ref|NP_187922.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75311241|sp|Q9LK58.1|PP225_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g13150
gi|10172602|dbj|BAB01406.1| unnamed protein product [Arabidopsis thaliana]
gi|66792658|gb|AAY56431.1| At3g13150 [Arabidopsis thaliana]
gi|332641781|gb|AEE75302.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 551
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 60/115 (52%), Gaps = 4/115 (3%)
Query: 37 DLVS---VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQV 93
DL+S +L EF R++ +++D+++ + P++ Y + L RNKK +A +
Sbjct: 227 DLISFNTLLEEFYRRELFVEGDRIWDLMKSKNL-SPNIRSYNSRVRGLTRNKKFTDALNL 285
Query: 94 WEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
+ +K E + D HT+ +I A+ E M YNEM+ TP ++ + +++
Sbjct: 286 IDVMKTEGISPDVHTYNALITAYRVDNNLEEVMKCYNEMKEKGLTPDTVTYCMLI 340
>gi|302761794|ref|XP_002964319.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
gi|300168048|gb|EFJ34652.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
Length = 384
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/151 (19%), Positives = 78/151 (51%), Gaps = 6/151 (3%)
Query: 22 FDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMML 81
F R +K + + V + +++ ++ ++L +V+ KE +PD Y ++ L
Sbjct: 5 FYRMMKDGCEATVVTYTVIIHGYLRQKSKLDHALRLLEVM-KESGKKPDEILYNCLVNGL 63
Query: 82 ARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPIS 141
+ ++ A+++ +D+K+++V + T+ ++I+ ++++G + ++ EM+ +P S
Sbjct: 64 VNSGRLEAAEKILDDMKQDKVSANLVTYTNLIKEYANAGRLQDCRKLFQEMKDKGESPNS 123
Query: 142 LPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
+ +++G F+E LEL+ +M
Sbjct: 124 WTYNALIQGYGRKGLFKEA-----LELYDEM 149
>gi|242043100|ref|XP_002459421.1| hypothetical protein SORBIDRAFT_02g004410 [Sorghum bicolor]
gi|241922798|gb|EER95942.1| hypothetical protein SORBIDRAFT_02g004410 [Sorghum bicolor]
Length = 735
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL 97
+V LA D++ +++ +R E+ RPD+F Y ++ + R + +VWE++
Sbjct: 279 VVRALAHAGMTDRL---LEMIGRMRNEVC-RPDVFVYTALVKTMVRRGYMDGCIRVWEEM 334
Query: 98 KREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS 134
+++ V D + ++ F ++G+ EA ++ EMRS
Sbjct: 335 EKDGVEPDTMAYATMVGGFCNTGMVEEAAELFKEMRS 371
>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 48/95 (50%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD+ Y ++ + R++KV +AK+V L E + D HT+ ++ G EA+
Sbjct: 282 KPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALR 341
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
++ +M P S + V+L+G + + + V+
Sbjct: 342 LFRKMEEDGCMPGSCSYNVLLQGCLQHNDTSTVVQ 376
>gi|356523854|ref|XP_003530549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial-like [Glycine max]
Length = 678
Score = 46.2 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD + Y ++ + R KV +AK++++ + R + D +T+ I A S+SG EA +
Sbjct: 567 PDTYSYNALIQIFCRMNKVEKAKKLFDSMSRSGLNPDNYTYSAFIEALSESGRLEEAKKM 626
Query: 129 YNEMRSSPATPISLPFRVILKGLI 152
+ M ++ +P S +I+K L+
Sbjct: 627 FYSMEANGCSPDSYICNLIIKILV 650
>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
Length = 471
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
K PD F Y ++ L + K+ EA+Q+ + D + II AF SG
Sbjct: 189 KASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKL 248
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREK--VKDDFLE---LFPDMIVY 175
EA EMR +P + + ++ GL + E + D E + PD++ Y
Sbjct: 249 LEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTY 306
Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 6/116 (5%)
Query: 66 WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEA 125
RP++ Y ++ L +++K +EAK+V E++K V D T+ +I + EA
Sbjct: 157 GMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEA 216
Query: 126 MFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLEL-----FPDMIVYD 176
+ M S TP + + I+ + E K E+ PD++ Y+
Sbjct: 217 EQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQK-TLQEMRKQRKSPDVVTYN 271
>gi|293330977|ref|NP_001169349.1| uncharacterized protein LOC100383216 [Zea mays]
gi|30961817|gb|AAP37977.1| PPR2 [Zea mays]
gi|224028857|gb|ACN33504.1| unknown [Zea mays]
gi|414883415|tpg|DAA59429.1| TPA: pentatricopeptide repeat 2 [Zea mays]
Length = 571
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
++++++++++ +Y P Y ++++L R+ + A Q+++++ ++ + +I
Sbjct: 201 LQVFEMLKEQPFYHPKEGTYMKLIVLLGRSGQPTRAHQLFDEMLQQGCQPTPELYTALIG 260
Query: 115 AFSDSGLPSEAMFIYNEMRSSP-ATPISLPFRVILKGLI 152
A+ SGL EA+ + N+M+SSP P + I+K I
Sbjct: 261 AYCRSGLLDEALQLLNDMKSSPLCQPDVYTYSTIIKACI 299
>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
Length = 581
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 69/140 (49%), Gaps = 5/140 (3%)
Query: 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100
VL+ R + C++LY+ + E + PD+ ++ ML + KKV +A +V E++ +
Sbjct: 263 VLSGHCRVGNMARCLELYEEM-TEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKI 321
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREK 160
+ D T+ ++ + L +A +++ M + P + + V+L GL + +
Sbjct: 322 GAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDA 381
Query: 161 --VKDDFLE--LFPDMIVYD 176
+ D +E L PD++ ++
Sbjct: 382 RVLFDRMIERKLVPDVVTFN 401
Score = 36.2 bits (82), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 66 WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEA 125
Y PD Y +L L R KV EAKQ ++ + D + ++ A G +EA
Sbjct: 110 GYEPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEA 169
Query: 126 --MFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174
+F +M P + + ++ G R + D+ ++LF D+I
Sbjct: 170 WGLFKTMDMADRKVAPDLITYNTLIDGFC-----RVEKTDEAMKLFKDVIA 215
>gi|449465242|ref|XP_004150337.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Cucumis sativus]
Length = 690
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
Query: 61 VRKEIW---YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117
V E+W Y+ D+F Y +L LA+++++ + +V++D+K + D++T+ +IR
Sbjct: 261 VYMEMWSKGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTG 320
Query: 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
G E++ ++ EM + TP + + +++ L + + D + LF +MI
Sbjct: 321 KMGRAEESLALFEEMLTKGCTPNLIAYNTMIQAL-----SKSGMVDKAILLFCNMI 371
Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 68/148 (45%), Gaps = 5/148 (3%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
+VL+ + QV LY+ ++++ + PD+F Y ++ L R KV EA +V+E+L+
Sbjct: 486 TVLSTLGKLKQVSHLHDLYEKMKQDGPF-PDIFTYNILISSLGRVGKVKEAVEVFEELES 544
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILK--GLIPYPEF 157
+ D ++ +I +G EA + EM+ P + + +++ G E
Sbjct: 545 SDCKPDIISYNSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEM 604
Query: 158 REKVKDDFLE--LFPDMIVYDPPEDLFE 183
+ D + P+++ Y+ D E
Sbjct: 605 ARSLFDRMITQGCCPNIVTYNILLDCLE 632
>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 632
Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 63/125 (50%), Gaps = 4/125 (3%)
Query: 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100
+++ F + D V + L++ +R ++ RPD+F Y +++ L + ++ EA + +++RE
Sbjct: 271 IISLFFKLDNVHGALSLFEEMRY-MYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQRE 329
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREK 160
+ D ++I +G + + ++ EM S P + + I+K L E + +
Sbjct: 330 DCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALF---ESKSR 386
Query: 161 VKDDF 165
V + F
Sbjct: 387 VSEVF 391
Score = 35.8 bits (81), Expect = 10.0, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 67/146 (45%), Gaps = 9/146 (6%)
Query: 29 HVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVV 88
H + S L+S + RQD ++L + + KE +P Y ++ + + V
Sbjct: 227 HPDTVTYSALISAFCKLGRQDSA---IRLLNEM-KENGMQPTAKIYTMIISLFFKLDNVH 282
Query: 89 EAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
A ++E+++ D T+ ++IR +G EA Y+EM+ P + V++
Sbjct: 283 GALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDT----VVM 338
Query: 149 KGLIPYPEFREKVKDDFLELFPDMIV 174
+I + ++ DD L+LF +M V
Sbjct: 339 NNMINFLGKAGRL-DDGLKLFEEMGV 363
>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
Length = 841
Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 58/108 (53%), Gaps = 7/108 (6%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
RPDM Y ++ L ++ K+ +A++V+EDL + D + + +I+ F D GL EA+
Sbjct: 575 RPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALA 634
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLE-LFPDMIV 174
+ ++M + P + + +I+ L EK ++D E L +MI+
Sbjct: 635 LLSKMEENGCIPDAKTYEIIILSLF------EKDENDMAEKLLREMIM 676
>gi|125590524|gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japonica Group]
Length = 414
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF-DQHTFGDIIRAFSDSGL 121
E PD + ++ L R +V +V L+R+ V + TF +I + +G
Sbjct: 109 NEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGK 168
Query: 122 PSEAMFIYNEMRSSPATPISLPFRVILKG 150
+AM +YN+M +S P ++ + V++ G
Sbjct: 169 LEDAMAVYNDMVASGIMPNTVTYNVLING 197
>gi|449507908|ref|XP_004163164.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Cucumis sativus]
Length = 685
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
Query: 61 VRKEIW---YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117
V E+W Y+ D+F Y +L LA+++++ + +V++D+K + D++T+ +IR
Sbjct: 256 VYMEMWSNGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTG 315
Query: 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
G E++ ++ EM + TP + + +++ L + + D + LF +MI
Sbjct: 316 KMGRAEESLALFEEMLTKGCTPNLIAYNTMIQAL-----SKSGMVDKAILLFCNMI 366
Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 68/148 (45%), Gaps = 5/148 (3%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
+VL+ + QV LY+ ++++ + PD+F Y ++ L R KV EA +V+E+L+
Sbjct: 481 TVLSTLGKLKQVSHLHDLYEKMKQDGPF-PDIFTYNILISSLGRVGKVKEAVEVFEELES 539
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILK--GLIPYPEF 157
+ D ++ +I +G EA + EM+ P + + +++ G E
Sbjct: 540 SDCKPDIISYNSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEM 599
Query: 158 REKVKDDFLE--LFPDMIVYDPPEDLFE 183
+ D + P+++ Y+ D E
Sbjct: 600 ARSLFDRMITQGCCPNIVTYNILLDCLE 627
>gi|242090439|ref|XP_002441052.1| hypothetical protein SORBIDRAFT_09g019485 [Sorghum bicolor]
gi|241946337|gb|EES19482.1| hypothetical protein SORBIDRAFT_09g019485 [Sorghum bicolor]
Length = 548
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 10/131 (7%)
Query: 58 YDVVR--KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
Y+VVR PD+ Y ++ L +V EA V + + E + HT+ I+ A
Sbjct: 153 YEVVRWMAANGVAPDVVTYSTLISGLCSAGRVAEALGVLDLMLEEGCQPNAHTYTPILHA 212
Query: 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLE------LF 169
+ SG+ EA + M ++ P + + V+++ L F E D LE
Sbjct: 213 YCTSGMIHEAKDLLETMVAAGFAPSTATYNVLVEALCKACAFEE--VDKLLEESSAKGWT 270
Query: 170 PDMIVYDPPED 180
PD I Y D
Sbjct: 271 PDTITYSTYMD 281
>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
Length = 602
Score = 45.8 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD+ Y +L L + V+A+++ +++ + L D TF +I GL +A+
Sbjct: 374 KPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIE 433
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
++ +M TP S+ + I+ GL + D LELF +M
Sbjct: 434 VFKQMPDKGCTPNSITYSTIISGLAKATKL-----DQALELFNEM 473
>gi|357465315|ref|XP_003602939.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491987|gb|AES73190.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 586
Score = 45.8 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++F Y ++ L + K+ +AK V ++K + D T+ +I FS +G EA+ +
Sbjct: 378 PNVFNYSALVDGLCKAGKLQDAKGVLAEMKSSGLKPDAITYTSLINFFSRNGQIDEAIEL 437
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVY 175
EM+ + ++ F VIL GL F E + D +E P VY
Sbjct: 438 LTEMKENDCQADTVTFNVILGGLCREGRFDEAL--DMIEKLPQQGVY 482
>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 730
Score = 45.8 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 65/126 (51%), Gaps = 4/126 (3%)
Query: 28 SHVSRLLKSDL---VSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARN 84
S VS+ ++ D+ S+L+ + R +V M++Y+ +R P+ F + ++ M +N
Sbjct: 283 SMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNC-TPNSFTFNALIGMHGKN 341
Query: 85 KKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPF 144
K E ++ED++ V D T+ ++ AF +G+ SE + ++ M+ + P F
Sbjct: 342 KNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATF 401
Query: 145 RVILKG 150
++++
Sbjct: 402 NILIEA 407
Score = 43.9 bits (102), Expect = 0.031, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 15/107 (14%)
Query: 57 LYDVVRKEIWYR---------------PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE 101
L DV K WY P++ Y ++L R A ++ + + +
Sbjct: 229 LLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKG 288
Query: 102 VLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
+ D T+ ++ A+S +G +AM IYN+MR+S TP S F ++
Sbjct: 289 IEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALI 335
Score = 38.5 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 38/83 (45%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+ + +L +N E +V+ +K+ D+ TF +I A+ G +A+ I
Sbjct: 361 PDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSI 420
Query: 129 YNEMRSSPATPISLPFRVILKGL 151
Y+ M + TP F +L L
Sbjct: 421 YDGMLQAGCTPDLATFNTLLAAL 443
Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 59/138 (42%), Gaps = 37/138 (26%)
Query: 47 RQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAK--------------- 91
R+ Q+ +L+ +R+E Y D++ Y ++ L+RN+K EA
Sbjct: 94 RESQLTTVSRLFKSLREE-GYPLDVYAYTSLISALSRNRKFKEALGFFEQMKEAGPQPSL 152
Query: 92 ---------------------QVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYN 130
+++E++K + + D++T+ I A + L EA ++
Sbjct: 153 VTYNVIIDLYGKKGRSWENILELFEEMKAQGIQPDEYTYNTAITACASGSLCEEATELFT 212
Query: 131 EMRSSPATPISLPFRVIL 148
+M+SS TP + + +L
Sbjct: 213 QMKSSNCTPDRVTYNALL 230
>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 819
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 67/151 (44%), Gaps = 19/151 (12%)
Query: 3 KESLMVAKELKRLQSHP--VRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+ ++ + +E++ P F+ FIK + +R D++ + D++ +C
Sbjct: 401 ESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIF------DEINVC------ 448
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
PD+ + +L + +N E V++++KR + ++ TF +I A+S G
Sbjct: 449 -----GLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCG 503
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+AM +Y M + TP + +L L
Sbjct: 504 SFEQAMTVYRRMLDAGVTPDLSTYNTVLAAL 534
Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD + Y ++ R EA QV+E++K D+ T+ ++ + S P EAM +
Sbjct: 277 PDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKV 336
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPEDLF 182
NEM + +P + + ++ R+ + D+ +EL M D+F
Sbjct: 337 LNEMELNGFSPSIVTYNSLISAYA-----RDGMLDEAMELKNQMAEKGTKPDVF 385
Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Query: 77 MLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSP 136
++ ML + +V A ++ L+ + D +++ +I AF++SG EA+ ++ +M
Sbjct: 179 VISMLGKEGRVSSAANLFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEEG 238
Query: 137 ATPISLPFRVILK--GLIPYP-----EFREKVKDDFLELFPDMIVYD 176
P + + VIL G + P EK+K D + PD Y+
Sbjct: 239 CKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIA--PDAYTYN 283
>gi|238478946|ref|NP_001154441.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|49660083|gb|AAT68332.1| hypothetical protein At1g63630 [Arabidopsis thaliana]
gi|50058961|gb|AAT69225.1| hypothetical protein At1g63630 [Arabidopsis thaliana]
gi|332196000|gb|AEE34121.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 152
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
S++ F +QD+V ++ D + + PD+ + ++ + K+V +++ ++ R
Sbjct: 15 SMIDGFCKQDRVDDAKRMLDSMASK-GCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHR 73
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
++ + T+ +I F G A + NEM S P + F +L GL E R+
Sbjct: 74 RGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKELRK 133
>gi|224093190|ref|XP_002309826.1| predicted protein [Populus trichocarpa]
gi|222852729|gb|EEE90276.1| predicted protein [Populus trichocarpa]
Length = 1480
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD Y +L AR V + K++WE++ + D+ T+ +I + G A+ +
Sbjct: 394 PDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMIHMYGKQGQNELALQL 453
Query: 129 YNEMRSSPATPISLPFRVILKGL 151
Y +M+SS P ++ + V++ L
Sbjct: 454 YRDMQSSGRNPDAVTYTVLIDSL 476
>gi|15222491|ref|NP_176550.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|332195999|gb|AEE34120.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 257
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
S++ F +QD+V ++ D + + PD+ + ++ + K+V +++ ++ R
Sbjct: 120 SMIDGFCKQDRVDDAKRMLDSMASK-GCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHR 178
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
++ + T+ +I F G A + NEM S P + F +L GL E R+
Sbjct: 179 RGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKELRK 238
Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 57 LYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116
L ++ K+I PD+ + ++ + +KV EA+++++++ R + T+ +I F
Sbjct: 68 LRHMIEKQI--NPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGF 125
Query: 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
+A + + M S +P + F ++ G + K D+ +E+F +M
Sbjct: 126 CKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYC-----KAKRVDNGMEIFCEM 176
>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
Length = 813
Score = 45.8 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+ D+F Y+ ML A +V+ +++ + + + D H F +I+A++ G+ A
Sbjct: 353 KTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATI 412
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
I+NEMR P + + ++ L R DD +E F MI
Sbjct: 413 IFNEMREQGVEPDVVTYSTVIAALC-----RIGKMDDAVEKFNQMI 453
>gi|356523145|ref|XP_003530202.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial-like [Glycine max]
Length = 529
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 75/170 (44%), Gaps = 19/170 (11%)
Query: 11 ELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQV---FLCMKLYDVVRKE--- 64
E R+Q V + I+++ + V++L + + V LC K+ D++ +E
Sbjct: 283 EENRVQPSEVTYGVMIEAYCKGRKPGEAVNLLEDMVEKGLVPSSVLCCKVVDLLCEEGSV 342
Query: 65 -----IW-------YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDI 112
+W +R ++ L + KVVEA+ V ++L++ EV T+ +
Sbjct: 343 ERACEVWRGVVRKGWRVGGAVVSTIVHWLCKEGKVVEARGVLDELEKGEV-ASLMTYNTL 401
Query: 113 IRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
I + G EA +++EM P + + V++KG + +E ++
Sbjct: 402 IAGMCERGQLCEAGRLWDEMVEKGRVPNAFTYNVLMKGFCKVGDVKEAIR 451
>gi|356518400|ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Glycine max]
Length = 546
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P+++ Y ++ L + K+ +AK V ++K + D T+ +I +G EA+ +
Sbjct: 338 PNVYNYSALVDGLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIEL 397
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVY 175
EM+ + S+ F V+L GL +F E + D +E P VY
Sbjct: 398 LEEMKENGCQADSVTFNVLLGGLCREGKFEEAL--DMVEKLPQQGVY 442
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDL-KREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
P++ Y ++ L RN +V EA ++E++ R+ ++ D T+ +I F G P A
Sbjct: 267 PNLVTYSTLMDGLCRNGRVKEAFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARN 326
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLE-----LFPDMIVY 175
+ M+S+ P + ++ GL + E K E L PD + Y
Sbjct: 327 VIQFMKSNGCYPNVYNYSALVDGLCKVGKL-EDAKGVLAEIKGSGLKPDAVTY 378
>gi|225425456|ref|XP_002272556.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01570
[Vitis vinifera]
Length = 792
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
+ PD+ Y ++ +L KV +A VWE+LK D T+ +I+ S S +AM
Sbjct: 268 FGPDLCTYNSLIRVLCLVGKVKDALIVWEELKGSGHEPDAFTYRILIQGCSKSYRMDDAM 327
Query: 127 FIYNEMRSSPATPISLPFRVILKGL 151
I+NEM+ + P ++ + +L GL
Sbjct: 328 RIFNEMQYNGFCPDTIVYNTLLDGL 352
>gi|10178273|emb|CAC08331.1| putative protein [Arabidopsis thaliana]
Length = 1280
Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
+VL F+R +L ++ K+ YR DM+ Y M +L+R ++ K + D+
Sbjct: 78 TVLNGFKRWGLAYL---FFNWASKQEGYRNDMYAYNAMASILSRARQNASLKALVVDVLN 134
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS-SPATPISLPFRVILKGL 151
FG IR ++GL EA +++ +R P + + +L+ +
Sbjct: 135 SRCFMSPGAFGFFIRCLGNAGLVDEASSVFDRVREMGLCVPNAYTYNCLLEAI 187
Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 92 QVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+++ED K +V+ T+ +I SG PSEA+F +NEM+ P + F +++GL
Sbjct: 674 RMYEDEKNPDVI----TYTSLIHGLCASGRPSEAIFRWNEMKGKDCYPNRITFMALIQGL 729
Query: 152 I 152
Sbjct: 730 C 730
>gi|357513379|ref|XP_003626978.1| hypothetical protein MTR_8g013670 [Medicago truncatula]
gi|355521000|gb|AET01454.1| hypothetical protein MTR_8g013670 [Medicago truncatula]
Length = 239
Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 4 ESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRK 63
+++ K + R+ + ++RL+KSDLV+ L E RQ+Q L ++++ VR
Sbjct: 57 QAIQTLKRINRINPQTQTETQLQTKTLTRLIKSDLVATLKELLRQEQPTLALRVFSAVRS 116
Query: 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
E Y D+ Y +ML KV+ ++ED+ R
Sbjct: 117 E--YGADLTLYAEML-------KVLGNCGMYEDVDR 143
>gi|195616496|gb|ACG30078.1| PPR2 [Zea mays]
Length = 580
Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
++++++++++ +Y P Y ++++L R+ + A Q+++++ ++ + +I
Sbjct: 210 LQVFEMLKEQPFYHPKEGTYMKLIVLLGRSGQPTRAHQLFDEMLQQGCQPTPELYTALIG 269
Query: 115 AFSDSGLPSEAMFIYNEMRSSP-ATPISLPFRVILKGLI 152
A+ SGL EA+ + N+M+SSP P + I+K +
Sbjct: 270 AYCRSGLLDEALQLLNDMKSSPLCQPDVYTYSTIIKACV 308
>gi|414587035|tpg|DAA37606.1| TPA: hypothetical protein ZEAMMB73_100135 [Zea mays]
Length = 547
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF-DQHTFGDIIRAFSDSGL 121
E PD + ++ L R K+V + +V L+R+ V + T+ +I + +G
Sbjct: 242 TEFGCSPDTITHNILVDGLCRAKQVNKGHEVLRRLQRDGVCMPNAVTYTSVISGYCKAGK 301
Query: 122 PSEAMFIYNEMRSSPATPISLPFRVILKG 150
+AM +YN+M S P ++ + V++ G
Sbjct: 302 MEDAMSVYNDMLESGTRPNTVTYNVLING 330
>gi|356575210|ref|XP_003555735.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
chloroplastic-like [Glycine max]
Length = 609
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 68/133 (51%), Gaps = 6/133 (4%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
+++ + R +V MKL + KE +P+++ Y ++ M R+K + + +++W+++KR
Sbjct: 445 TMIVMYGRTGRVRSAMKLVAKM-KERGCKPNVWIYNSLIDMHGRDKNLKQLEKLWKEMKR 503
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
V D+ ++ II A+S +G + +NE R + I I+ G+ +
Sbjct: 504 RRVAPDKVSYTSIIGAYSKAGEFETCVKFFNEYRMNGGL-IDRAMAGIMVGVFS----KV 558
Query: 160 KVKDDFLELFPDM 172
+ D+ ++L DM
Sbjct: 559 GLVDELVKLLQDM 571
>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 819
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 68/151 (45%), Gaps = 19/151 (12%)
Query: 3 KESLMVAKELKRLQSHP--VRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+ ++ + +E++ P F+ FIK + +R ++++ + D++ +C
Sbjct: 401 ESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIF------DEINVC------ 448
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
PD+ + +L + +N E V++++KR + ++ TF +I A+S G
Sbjct: 449 -----GLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCG 503
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+AM +Y M + TP + +L L
Sbjct: 504 SFEQAMTVYRRMLDAGVTPDLSTYNTVLAAL 534
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 5/114 (4%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD + Y ++ R EA QV+E++K +D+ T+ ++ + S P EAM +
Sbjct: 277 PDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKV 336
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPEDLF 182
NEM + +P + + ++ R+ + D+ +EL M D+F
Sbjct: 337 LNEMVLNGFSPSIVTYNSLISAYA-----RDGMLDEAMELKNQMAEKGTKPDVF 385
Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Query: 77 MLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSP 136
++ ML + +V A ++ L+ + D +++ +I AF++SG EA+ ++ +M
Sbjct: 179 IISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDG 238
Query: 137 ATPISLPFRVILK--GLIPYP-----EFREKVKDDFLELFPDMIVYD 176
P + + VIL G + P EK+K D + PD Y+
Sbjct: 239 CKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIA--PDAYTYN 283
>gi|27476073|gb|AAO17004.1| Hypothetical protein [Oryza sativa Japonica Group]
Length = 572
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 73/160 (45%), Gaps = 7/160 (4%)
Query: 5 SLMVAKELKRLQSHPVRFDRFIKSHVSRL-LKSDLVS---VLAEFQRQDQVFLCMKLYDV 60
++ V L + +H ++ + H+ L + DL S +L + L ++Y+
Sbjct: 281 NVYVFNSLMNVNAHSFSYNFSVYKHMQNLGVPPDLTSYNILLKTCCNAKEYKLAQEIYEE 340
Query: 61 VRKE---IWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117
++K+ + D+F Y M+ + A K A + +D++ V + T+ +I A++
Sbjct: 341 IKKKEQNGLLKLDVFTYSTMMKVFADAKMWKLASDIKQDMQSAGVRLNLVTWSSLINAYA 400
Query: 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEF 157
+SGL A+ I EM P + F +IL G + ++
Sbjct: 401 NSGLVDRAIEILEEMTRDGCQPTAPCFNIILTGCVKSCQY 440
>gi|255570073|ref|XP_002525999.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534731|gb|EEF36423.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 557
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%)
Query: 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123
E + PD F Y + L R K+VEA +V + E + D T+ +I ++ GL
Sbjct: 344 ESGFVPDKFVYTSWIAELCRQGKIVEAFKVKNKMVEEGIDLDLLTYSSLIFGLANKGLMI 403
Query: 124 EAMFIYNEMRSSPATPISLPFRVILKGLI 152
EA ++++M P S+ F ++++G +
Sbjct: 404 EAKQLFDDMLKRGIIPDSMVFDILIRGYL 432
Score = 36.6 bits (83), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 39 VSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLK 98
S +AE RQ ++ K+ + + +E D+ Y ++ LA ++EAKQ+++D+
Sbjct: 355 TSWIAELCRQGKIVEAFKVKNKMVEE-GIDLDLLTYSSLIFGLANKGLMIEAKQLFDDML 413
Query: 99 REEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133
+ ++ D F +IR + P ++ EMR
Sbjct: 414 KRGIIPDSMVFDILIRGYLKQDNPVAISHLHEEMR 448
>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
Length = 638
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 45 FQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF 104
F + D V + L++ +R + + RPD+F Y +++ L + ++ EA + +++RE
Sbjct: 275 FFKLDDVHGALSLFEEMRHQ-YCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRP 333
Query: 105 DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
D ++I +G +AM ++ EM + P + + I+K L
Sbjct: 334 DTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKAL 380
Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
+ ++D + K + PD++ Y ++ LAR + EA ++ + D +++ I+
Sbjct: 496 INMFDEMNK-LGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILN 554
Query: 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
+ +G P AM + + M+ S P + + +L L F E K
Sbjct: 555 GLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAAK 602
>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Glycine max]
Length = 556
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Query: 89 EAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
E Q++E++KR ++ + + + +I + + G+ +A ++ EMR + + +++
Sbjct: 246 EGFQMYENMKRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILI 305
Query: 149 KGLIPYPEFREKV----KDDFLELFPDMIVYDPPEDLFED 184
GL +F E V K + + L P+++ Y+ + F D
Sbjct: 306 GGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCD 345
>gi|302762967|ref|XP_002964905.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
gi|300167138|gb|EFJ33743.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
Length = 773
Score = 45.4 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 58/125 (46%)
Query: 24 RFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLAR 83
R + + S+L D + EF + ++L+ ++++ W +P Y M+ ++ R
Sbjct: 35 RCMDLYRSKLTMQDFSLIFREFAARSDWHRALRLFKYMQRQQWCKPTEHIYTIMIGIMGR 94
Query: 84 NKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLP 143
+ + +++ED+ +V ++ + F +I A+ +G ++ + M+ P +
Sbjct: 95 EGLLEKCSEIFEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKEQVEPNLIT 154
Query: 144 FRVIL 148
+ +L
Sbjct: 155 YNTVL 159
>gi|388505356|gb|AFK40744.1| unknown [Medicago truncatula]
Length = 263
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 4 ESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRK 63
+++ K + R+ + ++RL+KSDLV+ L E RQ+Q L ++++ VR
Sbjct: 57 QAIQTLKRINRINPQTQTETQLQTKTLTRLIKSDLVATLKELLRQEQPTLALRVFSAVRS 116
Query: 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
E Y D+ Y +ML KV+ ++ED+ R
Sbjct: 117 E--YGADLTLYAEML-------KVLGNCGMYEDVDR 143
>gi|225424625|ref|XP_002282301.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial [Vitis vinifera]
gi|296081374|emb|CBI16807.3| unnamed protein product [Vitis vinifera]
Length = 519
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 62/139 (44%), Gaps = 4/139 (2%)
Query: 17 SHPVRFDRFIKSHVSRLLKSDLVS---VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFF 73
SH R + + + + D+V+ ++ F R+ + KL D + + PD
Sbjct: 338 SHTKRAYKLFEEMGGKGITPDVVTFTILIKAFLREGSSNIAKKLLDQM-TGLGLLPDRVL 396
Query: 74 YRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133
Y ++ L + K+ A V+ D+ + D ++ +I + SEAM +Y +M
Sbjct: 397 YTTIVDHLCKTGKMGMAHSVFCDMVESGITPDVVSYNALINGLCRASRVSEAMHLYEDMH 456
Query: 134 SSPATPISLPFRVILKGLI 152
+ P + F++I+ GLI
Sbjct: 457 TGGPCPDEVTFKLIIGGLI 475
>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g01110-like [Cucumis sativus]
Length = 749
Score = 45.4 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 45/83 (54%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD Y ++ + ++ AK++W+D+ R++++ D ++G ++ F SGL EA+
Sbjct: 534 KPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALN 593
Query: 128 IYNEMRSSPATPISLPFRVILKG 150
+ ++M P + ++KG
Sbjct: 594 LCDQMLEKGIRPNLVTCNTLIKG 616
Score = 40.0 bits (92), Expect = 0.50, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 66/134 (49%), Gaps = 6/134 (4%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
++L E R+D + +++D + + PD+ + ++ +LARN + +A + +++R
Sbjct: 367 TLLVEICRRDNILEAQEIFDEMSRR-GVLPDLVSFSSLIGVLARNGHLYQALMHFREMER 425
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
++ D + +I F +G S+A+ + +EM + + + L GL ++
Sbjct: 426 SGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLC-----KK 480
Query: 160 KVKDDFLELFPDMI 173
K+ D LF +M+
Sbjct: 481 KMFADADMLFNEMV 494
>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 445
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 11/118 (9%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD+ Y ++ L +NK + +A V+ ++ + + D T+ +I F G EA
Sbjct: 195 KPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFS 254
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELF---------PDMIVYD 176
+ NEM+ P F V++ L E ++K+ D+ + LF PD++ Y+
Sbjct: 255 LLNEMKLKNINPDVYTFSVLIDAL--GKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYN 310
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 25/159 (15%)
Query: 2 SKESLMVAKELKRLQSHPVR-----FDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMK 56
+ E+ VA+ L++L+ H V+ ++ I S L D V +E
Sbjct: 176 AGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSE------------ 223
Query: 57 LYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116
++ K I PD+ Y ++ K+ EA + ++K + + D +TF +I A
Sbjct: 224 ---MIVKGI--SPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDAL 278
Query: 117 SDSG---LPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
G + EAM ++ EM+ P + + ++ GL
Sbjct: 279 GKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLC 317
>gi|116310235|emb|CAH67244.1| OSIGBa0140O07.12 [Oryza sativa Indica Group]
Length = 581
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF-DQHTFGDIIRAFSDSGL 121
E PD + ++ L R +V +V L+R+ V + TF +I + +G
Sbjct: 276 NEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGK 335
Query: 122 PSEAMFIYNEMRSSPATPISLPFRVILKG 150
+AM +YN+M +S P ++ + V++ G
Sbjct: 336 LEDAMAVYNDMVASGIMPNTVTYNVLING 364
>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Cucumis sativus]
Length = 749
Score = 45.4 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 45/83 (54%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD Y ++ + ++ AK++W+D+ R++++ D ++G ++ F SGL EA+
Sbjct: 534 KPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALN 593
Query: 128 IYNEMRSSPATPISLPFRVILKG 150
+ ++M P + ++KG
Sbjct: 594 LCDQMLEKGIRPNLVTCNTLIKG 616
Score = 40.0 bits (92), Expect = 0.50, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 66/134 (49%), Gaps = 6/134 (4%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
++L E R+D + +++D + + PD+ + ++ +LARN + +A + +++R
Sbjct: 367 TLLVEICRRDNILEAQEIFDEMSRR-GVLPDLVSFSSLIGVLARNGHLYQALMHFREMER 425
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
++ D + +I F +G S+A+ + +EM + + + L GL ++
Sbjct: 426 SGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLC-----KK 480
Query: 160 KVKDDFLELFPDMI 173
K+ D LF +M+
Sbjct: 481 KMFADADMLFNEMV 494
>gi|255549794|ref|XP_002515948.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544853|gb|EEF46368.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 706
Score = 45.4 bits (106), Expect = 0.013, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
Y D+F + +L LA+++KV +A +V+ED+K++ D++T+ +IR G E++
Sbjct: 73 YTLDIFAFNMLLDALAKDQKVDQAFKVFEDMKKKHCEPDEYTYTIMIRMTGRIGKLDESL 132
Query: 127 FIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
++ EM + +P + + +++ L ++ D + LF M+
Sbjct: 133 ALFEEMLNKGCSPNLIAYNTMIQALA-----NSRMVDKTILLFSKMM 174
Score = 39.7 bits (91), Expect = 0.63, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 4/119 (3%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+F Y ++ R KV EA +++E+L+ + D ++ +I +G EA
Sbjct: 317 PDIFTYNILISSFGRAGKVYEAIKIFEELENSDCKPDIISYNSLINCLGKNGDLDEAHIR 376
Query: 129 YNEMRSSPATPISLPFRVILK--GLIPYPEFREKVKDDFLE--LFPDMIVYDPPEDLFE 183
+ EM+ P + + +++ G E ++ D+ L FP+++ Y+ D E
Sbjct: 377 FREMQEKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCFPNIVTYNILLDCLE 435
>gi|297797974|ref|XP_002866871.1| EMB2453 [Arabidopsis lyrata subsp. lyrata]
gi|297312707|gb|EFH43130.1| EMB2453 [Arabidopsis lyrata subsp. lyrata]
Length = 561
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 12/131 (9%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+P++ Y +L A++ KV + +++DL V D +TF ++ A+ +G+ E
Sbjct: 205 QPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEA 264
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLEL-----------FPDMIVYD 176
+ MRS+ P + F V++ EF EK++ F L F MI+
Sbjct: 265 VLTRMRSNECKPDIITFNVLIDSYGKKQEF-EKMEQTFKSLMRSKEKPTLPTFNSMIINY 323
Query: 177 PPEDLFEDQEW 187
+ + EW
Sbjct: 324 GKARMIDKAEW 334
>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
Length = 571
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100
++A F + + V + L++ +R + + RPD+F Y +++ L + ++ EA + +++RE
Sbjct: 271 LVALFFKLNDVHGALSLFEEMRHQ-YCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQRE 329
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
D ++I +G +AM ++ EM + P + + I+K L
Sbjct: 330 GCRPDTIVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKAL 380
>gi|297736961|emb|CBI26162.3| unnamed protein product [Vitis vinifera]
Length = 636
Score = 45.1 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
K+ Y PD Y M+ L R K + +A+++W ++ ++ L +++T+ +I + G
Sbjct: 359 KDRGYAPDRVMYTTMIHGLCRMKWLGDARKLWFEMIQKGFLPNEYTYNAMIHGYFKIGNL 418
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLEL 168
EA +Y EM ++ + V++KGL + + +E D F E+
Sbjct: 419 EEAWKMYREMCDKGYGEKTVSYNVMIKGLCSHGKIKE-AHDLFEEM 463
>gi|168054024|ref|XP_001779433.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669118|gb|EDQ55711.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 570
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 15/162 (9%)
Query: 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWE 95
S L+S QD M +D + E PD+ Y M+ + + K EA ++E
Sbjct: 82 STLISCANRCNYQDAA---MAWFDRMH-EAGCVPDVVTYSTMIDVYGKMGKYDEAIALYE 137
Query: 96 DLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYP 155
+K+ D+ T+G ++R F +G A+ I+ EM+ S P ++ + +++ L
Sbjct: 138 RVKQAGWKPDKVTYGTMVRLFGRAGYIRAAVSIFEEMKGSGVQPDAIVYNIMIACLGRAG 197
Query: 156 EF-----------REKVKDDFLELFPDMIVYDPPEDLFEDQE 186
RE VK + + L M Y ++ E E
Sbjct: 198 RMGHALKVFEEMEREGVKPNAVTLSTVMETYSRCGNVMEGLE 239
Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD Y M+ L R ++ A +V+E+++RE V + T ++ +S G E +
Sbjct: 180 QPDAIVYNIMIACLGRAGRMGHALKVFEEMEREGVKPNAVTLSTVMETYSRCGNVMEGLE 239
Query: 128 IYNEMRSSPATPISLPFRVILK 149
++ +R A + + + +LK
Sbjct: 240 VFQRLRQGVACDV-IVYNAVLK 260
>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
Length = 552
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 70/163 (42%), Gaps = 9/163 (5%)
Query: 24 RFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLAR 83
R H + + + ++ L + R + + LYD + +RP + Y ++ L R
Sbjct: 57 RAKGCHPTVVTYNTMIDGLCKCGRIENA---LTLYDDMAIHFGFRPTVVTYSTLIDGLCR 113
Query: 84 NKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLP 143
+ +V + ++ E++ + T+ ++ A G EA + +M ++ P +
Sbjct: 114 DHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELIT 173
Query: 144 FRVILKGLIPYPEFRE--KVKDDFL----ELFPDMIVYDPPED 180
F +I+KGL E +V D+ L PD+I ++ D
Sbjct: 174 FGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLD 216
>gi|357498963|ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494785|gb|AES75988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 582
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 49/89 (55%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
K+ RPDM+ Y ++ L ++ K+ +A++V+EDL + D +T+ +I+ F GL
Sbjct: 447 KDQGIRPDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVKGYNLDVYTYTVMIQGFCVKGLF 506
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGL 151
A+ + ++M + P + + +++ L
Sbjct: 507 DAALALLSKMEDNGCIPNAKTYEIVILSL 535
>gi|302809589|ref|XP_002986487.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
gi|300145670|gb|EFJ12344.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
Length = 773
Score = 45.1 bits (105), Expect = 0.014, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 58/125 (46%)
Query: 24 RFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLAR 83
R + + S+L D + EF + ++L+ ++++ W +P Y M+ ++ R
Sbjct: 35 RCMDLYRSKLTMQDFSLIFREFAARSDWHRALRLFKYMQRQQWCKPTEHIYTIMIGIMGR 94
Query: 84 NKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLP 143
+ + +++ED+ +V ++ + F +I A+ +G ++ + M+ P +
Sbjct: 95 EGLLEKCSEIFEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKERVEPNLIT 154
Query: 144 FRVIL 148
+ +L
Sbjct: 155 YNTVL 159
>gi|22330179|ref|NP_683419.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
gi|75216707|sp|Q9ZU27.1|PPR76_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g51965, mitochondrial; Flags: Precursor
gi|4220445|gb|AAD12672.1| Similar to gi|3004555 F19F24.14 salt inducible protein homolog from
Arabidopsis thaliana BAC gb|AC003673 [Arabidopsis
thaliana]
gi|332194619|gb|AEE32740.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
Length = 650
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 58/108 (53%), Gaps = 8/108 (7%)
Query: 66 WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEA 125
++ D+F Y +L LA+++K A QV+ED+K+ D++T+ +IR G EA
Sbjct: 233 GHKLDIFAYNMLLDALAKDEK---ACQVFEDMKKRHCRRDEYTYTIMIRTMGRIGKCDEA 289
Query: 126 MFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
+ ++NEM + T + + +++ L + K+ D +++F M+
Sbjct: 290 VGLFNEMITEGLTLNVVGYNTLMQVLA-----KGKMVDKAIQVFSRMV 332
Score = 36.6 bits (83), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 6/128 (4%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+F Y ++ R +V EA ++E+L+R + D ++ +I +G EA
Sbjct: 475 PDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVR 534
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELF-----PDMIVYDPPEDLFE 183
+ EM+ P + + +++ E E F E+ P+++ Y+ D E
Sbjct: 535 FKEMQEKGLNPDVVTYSTLME-CFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLE 593
Query: 184 DQEWRRES 191
E+
Sbjct: 594 KNGRTAEA 601
>gi|224136033|ref|XP_002327364.1| predicted protein [Populus trichocarpa]
gi|222835734|gb|EEE74169.1| predicted protein [Populus trichocarpa]
Length = 662
Score = 45.1 bits (105), Expect = 0.014, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 47/82 (57%)
Query: 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIY 129
D+F + +L L ++ +V A +V+ED+KR+ D++T+ +IR G P E++ ++
Sbjct: 245 DIFAFNMLLDALVKDSEVDHAYKVFEDMKRKHCEPDEYTYTIMIRMTGKIGKPDESLELF 304
Query: 130 NEMRSSPATPISLPFRVILKGL 151
EM + +P + + +++ L
Sbjct: 305 EEMLNKGYSPNVIAYNTMIQAL 326
Score = 35.8 bits (81), Expect = 9.2, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD F Y ++ R KV EA +++E+L+ + D ++ +I +G EA
Sbjct: 486 PDTFTYNILISSFGRAGKVDEAIKIFEELEDSDYKPDTCSYNSLINCLGKNGHLDEAHMK 545
Query: 129 YNEMRSSPATPISLPFRVILK--GLIPYPEFREKVKDDFLE--LFPDMIVYDPPEDLFE 183
+ EM P + + +++ G E ++ D+ L +P+++ Y+ D E
Sbjct: 546 FKEMCEKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCYPNIVTYNILLDCLE 604
>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
Length = 432
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 14/141 (9%)
Query: 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEI---WYRPDMFFYRDMLMMLARNKKVVEAKQ 92
+ L++ L + R D F D+ RK + RP+ F Y ++ L + ++ A+
Sbjct: 100 TTLINGLCKLGRVDAAF------DLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARA 153
Query: 93 VWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
V + ++ + D T+ ++ A G EA+ + +M P + F I+ GL
Sbjct: 154 VITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLC 213
Query: 153 PYPEFREKVKDDFLELFPDMI 173
R + D LE+F +MI
Sbjct: 214 -----RARRLADALEVFNEMI 229
>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
Length = 382
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 14/141 (9%)
Query: 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEI---WYRPDMFFYRDMLMMLARNKKVVEAKQ 92
+ L++ L + R D F D+ RK + RP+ F Y ++ L + ++ A+
Sbjct: 50 TTLINGLCKLGRVDAAF------DLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARA 103
Query: 93 VWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
V + ++ + D T+ ++ A G EA+ + +M P + F I+ GL
Sbjct: 104 VIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLC 163
Query: 153 PYPEFREKVKDDFLELFPDMI 173
R + D LE+F +MI
Sbjct: 164 -----RARRLADALEVFNEMI 179
>gi|195627114|gb|ACG35387.1| hypothetical protein [Zea mays]
Length = 371
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 72/145 (49%), Gaps = 9/145 (6%)
Query: 56 KLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL---KREEVLFDQHTFGDI 112
+L V+R+E RPD+ Y ++ +AR+K++ EA +V+ L K+ +V+ D T+ +
Sbjct: 210 ELIRVMREEASLRPDVGSYNALMRAMARHKRLDEAVEVYRSLEAGKKADVVPDCATYSCV 269
Query: 113 IRAFSDSGLPSEAMFI-YNEMRSSPATPISLPFRVILKGLIPYPEFRE--KVKDDFLELF 169
+ A +G SEA + Y ++ + RV+++GL + R +V + F
Sbjct: 270 VGALCGAGRWSEAEDVFYAGVKRRKVADLGT-VRVLVRGLKDAGKGRAARRVVVGLCKKF 328
Query: 170 PDMIVYDPPEDLFEDQEWRRESDEE 194
P+M +D P E+ S +E
Sbjct: 329 PEM--FDGPWRELEEAAGLNSSGKE 351
>gi|6633861|gb|AAF19720.1|AC008047_27 F2K11.2 [Arabidopsis thaliana]
Length = 332
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
S++ F +QD+V ++ D + + PD+ + ++ + K+V +++ ++ R
Sbjct: 165 SMIDGFCKQDRVDDAKRMLDSMASK-GCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHR 223
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
++ + T+ +I F G A + NEM S P + F +L GL E R+
Sbjct: 224 RGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKELRK 283
Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 57 LYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116
L ++ K+I PD+ + ++ + +KV EA+++++++ R + T+ +I F
Sbjct: 113 LRHMIEKQI--NPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGF 170
Query: 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
+A + + M S +P + F ++ G + K D+ +E+F +M
Sbjct: 171 CKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYC-----KAKRVDNGMEIFCEM 221
>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 712
Score = 45.1 bits (105), Expect = 0.015, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100
+++EF RQ + ++ + K + +PDM Y ++ R KKV E+++++E+
Sbjct: 480 LISEFCRQTDNKQALAIFSRMFK-VGLQPDMHTYNVLIATFCRQKKVEESEKLFEEAVGL 538
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREK 160
+L + T+ +I + G S A+ +++MR P S+ + ++ GL E
Sbjct: 539 GLLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALISGLC-----NES 593
Query: 161 VKDDFLELFPDMI 173
D+ +L+ MI
Sbjct: 594 KLDEACQLYETMI 606
>gi|449435418|ref|XP_004135492.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial-like [Cucumis sativus]
gi|449494962|ref|XP_004159696.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial-like [Cucumis sativus]
Length = 514
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+ FY ++ + +K+ A+ V+ D+ + D ++ +I + SEAM +
Sbjct: 391 PDLIFYTTVVDYFCKTRKIEMAQGVFRDMIEIGISPDVVSYNALINGLCKASKVSEAMLL 450
Query: 129 YNEMRSSPATPISLPFRVILKGLI 152
Y EM+ P + F++I+ GL+
Sbjct: 451 YEEMQIRGCYPDEVTFKLIIGGLL 474
>gi|361069487|gb|AEW09055.1| Pinus taeda anonymous locus CL3468Contig1_03 genomic sequence
Length = 67
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++ + DM+MML RNK+V E + V L++E + D +II AF + G+ AM
Sbjct: 1 PNLSLHADMIMMLGRNKRVEEIESVLLVLQKEGLRPDTRVCTEIIGAFINVGMVQNAMDT 60
Query: 129 YNEMRSS 135
+ M+ +
Sbjct: 61 FELMKQT 67
>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 559
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
S+L + QV + L ++ E +PD+ Y ++ L +N ++ +A+ V+EDL
Sbjct: 427 SILDALCKNHQVDKAIALLTKMKDE-GIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLV 485
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+ + D + + +I+ F GL E++ + ++M + P ++ + +I+ L
Sbjct: 486 KGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCIPNAVTYEIIICSL 537
Score = 38.9 bits (89), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 44/95 (46%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD+F Y ++ K+V +AK ++ + + V + H++ +I F EAM
Sbjct: 314 KPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMN 373
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
++ EM + P + + ++ GL + +K
Sbjct: 374 LFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALK 408
>gi|125549468|gb|EAY95290.1| hypothetical protein OsI_17116 [Oryza sativa Indica Group]
Length = 608
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 71/151 (47%), Gaps = 15/151 (9%)
Query: 22 FDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMML 81
FD+ + ++ +++S+ + R M+L V++K+ P+++ Y +L M
Sbjct: 433 FDKCVVAY------GNMISMYGKISRASDA---MRLLAVMKKK-GCEPNIWVYNSLLDMH 482
Query: 82 ARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPIS 141
R +A+++W+++ R ++ D+ ++ II AF+ SG M +Y E R +
Sbjct: 483 GRLGNSRQAEKIWKEMMRRKIQPDRISYTAIINAFNRSGELDRCMDLYQEFRETGG---- 538
Query: 142 LPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
L GL+ + ++ +EL DM
Sbjct: 539 -KVDTALAGLMVGVFSKCSRFNELIELLKDM 568
>gi|255582955|ref|XP_002532248.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528066|gb|EEF30142.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 521
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++F Y ++ + ++ EAK+V++++K + D + +I F G EAM +
Sbjct: 304 PNVFNYSVLMNGFCKEGRLEEAKEVFDEMKSSGLKPDTVGYTTLINCFCGVGRIDEAMEL 363
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
EM ++ F V+LKGL F E ++
Sbjct: 364 LKEMTEMKCKADAVTFNVLLKGLCREGRFDEALR 397
>gi|91806015|gb|ABE65736.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 360
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 15/149 (10%)
Query: 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL 97
L S+L F +++ + L D + E+ Y+PD + ++ L ++ K EA + E +
Sbjct: 148 LNSLLNGFCHGNRISEAVALVDQMV-EMGYQPDTVTFTTLVHGLFQHNKASEAVALVERM 206
Query: 98 KREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEF 157
+ D T+G +I G P A+ + N+M + + I+ GL Y
Sbjct: 207 VVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHM 266
Query: 158 REKVKDDFLELF---------PDMIVYDP 177
DD +LF PD+ Y+P
Sbjct: 267 -----DDAFDLFNKMETKGIKPDVFTYNP 290
>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 867
Score = 44.7 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 41/85 (48%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
++PD+ Y +L A + V+ ++ + ++ D H F +I A + G+ EA+
Sbjct: 408 HKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEAL 467
Query: 127 FIYNEMRSSPATPISLPFRVILKGL 151
I+ EMR +P + + ++ L
Sbjct: 468 LIFTEMRGQGVSPNVVTYATVIAAL 492
>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
chloroplastic-like [Glycine max]
Length = 556
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWE 95
S L+ L + DQ K ++ +EI +PDM+ Y ++ L + ++ A++V++
Sbjct: 423 SSLIDALCKNCHLDQAIALFK--KMITQEI--QPDMYTYTILIDGLCKGGRLKIAQEVFQ 478
Query: 96 DLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
L + D T+ +I F +GL EA+ + ++M + P ++ F +I+ L
Sbjct: 479 HLLIKGYHLDIRTYTVMISGFCKAGLFDEALALLSKMEDNGCIPNAITFDIIICAL 534
Score = 43.1 bits (100), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 8/119 (6%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD+ Y ++ L +NK V EA ++ ++ +++ + T+ +I F G EA+
Sbjct: 206 KPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVA 265
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELF------PDMIVYDPPED 180
+ NEM+ P F +++ L E + K L + PD++ Y+ D
Sbjct: 266 LLNEMKLKNINPDVYTFSILIDAL--GKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVD 322
>gi|15235161|ref|NP_195672.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75266408|sp|Q9SV96.1|PP358_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g39620, chloroplastic; AltName: Full=Protein EMBRYO
DEFECTIVE 2453; Flags: Precursor
gi|5042178|emb|CAB44697.1| putative protein [Arabidopsis thaliana]
gi|7270946|emb|CAB80625.1| putative protein [Arabidopsis thaliana]
gi|58013022|gb|AAW62964.1| chloroplast embryo-defective 2453 [Arabidopsis thaliana]
gi|332661694|gb|AEE87094.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 563
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 12/131 (9%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+P++ Y +L A++ KV + +++DL V D +TF ++ A+ +G+ E
Sbjct: 205 QPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEA 264
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLEL-----------FPDMIVYD 176
+ MRS+ P + F V++ EF EK++ F L F MI+
Sbjct: 265 VLTRMRSNECKPDIITFNVLIDSYGKKQEF-EKMEQTFKSLMRSKEKPTLPTFNSMIINY 323
Query: 177 PPEDLFEDQEW 187
+ + EW
Sbjct: 324 GKARMIDKAEW 334
>gi|413953460|gb|AFW86109.1| hypothetical protein ZEAMMB73_051838 [Zea mays]
Length = 240
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 56/125 (44%), Gaps = 4/125 (3%)
Query: 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL 97
++ L + R D + ++D + K + PD++ Y ++ LAR + EA +
Sbjct: 87 MIKHLGKAGRLDDA---INMFDEMNK-LGCAPDVYAYNALMSGLARTGMIDEALSTMRRM 142
Query: 98 KREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEF 157
+ + D +++ I+ + +G P AM + + M+ S +P + + +L L F
Sbjct: 143 QEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVSPDVVSYNTVLGALSHAGMF 202
Query: 158 REKVK 162
E K
Sbjct: 203 EEASK 207
>gi|224098475|ref|XP_002334555.1| predicted protein [Populus trichocarpa]
gi|222873072|gb|EEF10203.1| predicted protein [Populus trichocarpa]
Length = 244
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 11/134 (8%)
Query: 53 LCM------KLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ 106
LCM KL+DV+ + Y+PD+F Y ++ + ++ +AKQ++ ++ + + D+
Sbjct: 6 LCMEVVEARKLFDVMITK-GYKPDVFCYNILINGYCKATRIDKAKQLYNEMILQGLTPDK 64
Query: 107 HTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYP----EFREKVK 162
T+ +I G EA ++ M + P + ++L GL FR
Sbjct: 65 VTYNTLIHGLCQLGRLREAQDLFKNMHKNGNLPDLFAYSILLDGLCKQGYLGKAFRLFRA 124
Query: 163 DDFLELFPDMIVYD 176
L PD+++Y+
Sbjct: 125 MQSSSLKPDLVMYN 138
>gi|297723401|ref|NP_001174064.1| Os04g0583150 [Oryza sativa Japonica Group]
gi|38346804|emb|CAE04154.2| OSJNBa0088A01.11 [Oryza sativa Japonica Group]
gi|125591406|gb|EAZ31756.1| hypothetical protein OsJ_15910 [Oryza sativa Japonica Group]
gi|215686818|dbj|BAG89668.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255675722|dbj|BAH92792.1| Os04g0583150 [Oryza sativa Japonica Group]
Length = 606
Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 71/151 (47%), Gaps = 15/151 (9%)
Query: 22 FDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMML 81
FD+ + ++ +++S+ + R M+L V++K+ P+++ Y +L M
Sbjct: 431 FDKCVVAY------GNMISMYGKISRASDA---MRLLAVMKKK-GCEPNIWVYNSLLDMH 480
Query: 82 ARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPIS 141
R +A+++W+++ R ++ D+ ++ II AF+ SG M +Y E R +
Sbjct: 481 GRLGNSRQAEKIWKEMMRRKIQPDRISYTAIINAFNRSGELDRCMDLYQEFRETGG---- 536
Query: 142 LPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
L GL+ + ++ +EL DM
Sbjct: 537 -KVDTALAGLMVGVFSKCSRFNELIELLKDM 566
>gi|357500143|ref|XP_003620360.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495375|gb|AES76578.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 426
Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 53/111 (47%)
Query: 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100
V+A+ R D V + + + PD F Y ++ L ++K VV+A ++ ++ +
Sbjct: 71 VIAKGFRLDNVSYGTLINGLCKSGETKAPDQFMYSMIINRLCKDKLVVDAYDLYCEMVVK 130
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+ D T+ +I F G +A+ ++NEMR P F +++ GL
Sbjct: 131 RIFPDVVTYNTLIYGFCIVGQLEDAIRLFNEMRLKNIVPNVCSFNILIDGL 181
>gi|41152692|dbj|BAD08216.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 401
Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++ Y ++ L + + V +A +V + + V+ D T+ I+ F SG P EA+
Sbjct: 114 PNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVF 173
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFRE--KVKDDFLE--LFPDMIVY 175
+MRS P + + ++ L E K+ D + L PD+ Y
Sbjct: 174 LKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTY 224
Score = 39.3 bits (90), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 71/150 (47%), Gaps = 7/150 (4%)
Query: 24 RFIKSHVSRLLKSDLVS---VLAEFQRQDQVFLCMKLYDV-VRKEIWYRPDMFFYRDMLM 79
+ S R LK D+ + +L + + + L D+ VR I P+ + + ++
Sbjct: 207 KIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGI--HPNHYVFSILVC 264
Query: 80 MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
A+ +KV EA V+ ++++ + + T+G +I SG +AM + +M P
Sbjct: 265 AYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRP 324
Query: 140 ISLPFRVILKGLIPYPEFREKVKDDFLELF 169
S+ + ++ L + ++ EK ++ FLE+
Sbjct: 325 DSIVYNSLIHSLCIFDKW-EKAEELFLEML 353
>gi|302763305|ref|XP_002965074.1| hypothetical protein SELMODRAFT_83127 [Selaginella moellendorffii]
gi|300167307|gb|EFJ33912.1| hypothetical protein SELMODRAFT_83127 [Selaginella moellendorffii]
Length = 484
Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 8/121 (6%)
Query: 54 CMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113
C++L+ + K PD + Y ++ + +K+ EAK + +D R V D + + +I
Sbjct: 308 CLELFKGMSKA-GLSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPDVYMYTTLI 366
Query: 114 RAFSDSGLP--SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPD 171
+ + P EA+ ++ M+ P + + ++L+GL F D+ ++F +
Sbjct: 367 SGYCRARKPRVDEALLLFQNMKDRRVWPNVITYNIVLRGLCKTGRF-----DEAYQIFQE 421
Query: 172 M 172
M
Sbjct: 422 M 422
Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 9/119 (7%)
Query: 57 LYDVVRKEIWYRPDMFFYRDMLMMLARNKK--VVEAKQVWEDLKREEVLFDQHTFGDIIR 114
L D R + PD++ Y ++ R +K V EA +++++K V + T+ ++R
Sbjct: 347 LQDAARNHVG--PDVYMYTTLISGYCRARKPRVDEALLLFQNMKDRRVWPNVITYNIVLR 404
Query: 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
+G EA I+ EM +P + F+V+ G+I + D F +F DM+
Sbjct: 405 GLCKTGRFDEAYQIFQEMFKVKCSPNRMTFKVMTMGMI-----HCRKTDKFERIFMDMV 458
Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 48/110 (43%)
Query: 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100
V + +R + L K +D K+ YR D++ Y +L L R ++ EA + ++
Sbjct: 14 VGSVIRRVPSLALARKFFDWSSKQEGYRHDVYCYTRLLHHLVRARRTREAVRFFKRELCA 73
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG 150
++F II+ F + P A MRS P + V+LKG
Sbjct: 74 HCRPSLYSFTIIIQCFCNVRNPGRAWRYLGYMRSLGIPPDVTAYNVVLKG 123
>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
Length = 691
Score = 44.7 bits (104), Expect = 0.020, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 58/115 (50%), Gaps = 8/115 (6%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+P++ Y ++ +N K+ EA + +D+ ++VL + + II A+ + G +A
Sbjct: 477 KPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFI 536
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFL------ELFPDMIVYD 176
+ +M+S+ +P + + +++KGL + E ++ + L PD + Y+
Sbjct: 537 LVEKMKSNGISPSIVTYNLLIKGLCNQSQISE--AEEIINSLSNHRLIPDAVSYN 589
>gi|357137687|ref|XP_003570431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
mitochondrial-like [Brachypodium distachyon]
Length = 938
Score = 44.7 bits (104), Expect = 0.020, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 42/83 (50%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD Y M+ +R K +A ++ +KR + + T+ +I ++G +A +
Sbjct: 591 KPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKY 650
Query: 128 IYNEMRSSPATPISLPFRVILKG 150
+ NEM SS +P SL R +L+
Sbjct: 651 LLNEMSSSGFSPTSLTHRRVLQA 673
>gi|300681579|emb|CBI75523.1| PPR repeat domain containing protein [Triticum aestivum]
Length = 728
Score = 44.7 bits (104), Expect = 0.020, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 8/122 (6%)
Query: 53 LCMKLY-DVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGD 111
+C L+ D+V + PD + Y ++ R++++ EA +V+E + + + + T
Sbjct: 406 ICYDLWNDMVHHN--FVPDAYNYSSLIYAYCRHRQLKEALEVFELMVSDGICPNVVTCTI 463
Query: 112 IIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPD 171
++ FS+ GL EA +++R P +RVI+ GL + +D +F D
Sbjct: 464 LVHGFSNEGLIGEAFLFLDKVRQFGVVPSLCTYRVIIHGLC-----KVNKPNDMWGIFAD 518
Query: 172 MI 173
MI
Sbjct: 519 MI 520
>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
Length = 687
Score = 44.7 bits (104), Expect = 0.020, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 58/115 (50%), Gaps = 8/115 (6%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+P++ Y ++ +N K+ EA + +D+ ++VL + + II A+ + G +A
Sbjct: 473 KPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFI 532
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFL------ELFPDMIVYD 176
+ +M+S+ +P + + +++KGL + E ++ + L PD + Y+
Sbjct: 533 LVEKMKSNGISPSIVTYNLLIKGLCNQSQISE--AEEIINSLSNHRLIPDAVSYN 585
>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
Length = 632
Score = 44.7 bits (104), Expect = 0.020, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Query: 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100
+++ F + D V + L++ +R ++ RPD+F Y +++ L + ++ EA + +++RE
Sbjct: 271 IISLFFKLDNVHGALSLFEEMRY-MYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQRE 329
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREK 160
D ++I +G + + ++ EM S P + + I+K L E + +
Sbjct: 330 GCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALF---ESKSR 386
Query: 161 VKDDF 165
V + F
Sbjct: 387 VSEVF 391
>gi|326499175|dbj|BAK06078.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 566
Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF-DQHTFGDIIRAFSDSGLP 122
E PD + ++ L R K+V + ++V L+R+ V + T+ +I + +G
Sbjct: 262 EFGCSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDGVCMPNVVTYTSVISGYCKAGRM 321
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKG 150
+AM +YN+M + +P + + V++ G
Sbjct: 322 EDAMAVYNDMVAVGTSPNVVTYNVLING 349
>gi|168045050|ref|XP_001774992.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673739|gb|EDQ60258.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 385
Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Query: 56 KLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
+++++VR + WY D+ Y +L MLA+ K+ EA V++ L +++ F ++
Sbjct: 19 QVFELVRAQEWYTADLSTYLKLLTMLAKAKQAAEASNVFDCLLEDKLRPTTAIFTALLTV 78
Query: 116 FSDSGLPSEAMFIYNEMR-SSPATPISLPFRVILKGLIP---YPEFREKVKDDFL--ELF 169
F+ S +A+ I+ MR P + ++KG Y + R K+ D+ + +
Sbjct: 79 FTQSNQFKKALEIFESMRLYEGCVPDKYTYTAMIKGCCEAGLYVQAR-KIFDEMMIEGVK 137
Query: 170 PDMIVYD 176
P ++ Y+
Sbjct: 138 PSIVTYN 144
>gi|148906806|gb|ABR16549.1| unknown [Picea sitchensis]
Length = 524
Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 11/116 (9%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+ F+R+ L +L + K A +WE +K+ +L D ++ +I F S P + F
Sbjct: 311 PDLGFFRNTLQILYQRKDTKNAYGLWELMKQSGILLDLPSYNTMIGVFC-SANPIQVDFA 369
Query: 129 Y---NEMRSSPATPISLPFRVILKGLIPYPE-------FREKVKDDFLELFPDMIV 174
Y +EM + P + I + LI + FRE K+DF L+ + ++
Sbjct: 370 YRLLDEMVFTGIFPDFKTYNTIFEALITARKVEEASSIFREMTKNDFCPLYANYVM 425
>gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 827
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 19/153 (12%)
Query: 1 MSKESLMVAKELKRLQSHP--VRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLY 58
M + ++ + E++ P F+ IK H +R ++++ V E + + C
Sbjct: 408 MDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIE----ICNCA--- 460
Query: 59 DVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118
PD+ + +L + +N E V++++KR + ++ TF +I A+S
Sbjct: 461 ----------PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSR 510
Query: 119 SGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
G +AM +Y M + TP + +L L
Sbjct: 511 CGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAAL 543
Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD + Y ++ R EA QV+E++K D+ TF ++ + S P EAM +
Sbjct: 286 PDDYTYNTLISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEV 345
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFRE--KVKDDFLE--LFPDMIVYDPPEDLFE 183
EM S +P + + ++ RE ++KD +E + PD+ Y FE
Sbjct: 346 LKEMEFSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFE 404
>gi|224142151|ref|XP_002324422.1| predicted protein [Populus trichocarpa]
gi|222865856|gb|EEF02987.1| predicted protein [Populus trichocarpa]
Length = 453
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
++P + Y ++ L R K ++ ++ + D F II AFS+SG EAM
Sbjct: 44 HKPTLITYTTLVAALTRQKLFKSILRLISKVEENGMKPDSILFNSIINAFSESGNMKEAM 103
Query: 127 FIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPD 171
++ +M+ S P + F ++KG + E +K LE D
Sbjct: 104 KLFRKMKESGCKPTTSTFNTLIKGYGNAGKTEEALK--LLEFLQD 146
>gi|46091161|dbj|BAD13709.1| PPR protein [Oryza sativa Indica Group]
Length = 332
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++ Y ++ L + + V +A +V + + V+ D T+ I+ F SG P EA+
Sbjct: 45 PNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVF 104
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFRE--KVKDDFLE--LFPDMIVY 175
+MRS P + + ++ L E K+ D + L PD+ Y
Sbjct: 105 LKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTY 155
Score = 39.3 bits (90), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 71/150 (47%), Gaps = 7/150 (4%)
Query: 24 RFIKSHVSRLLKSDLVS---VLAEFQRQDQVFLCMKLYDV-VRKEIWYRPDMFFYRDMLM 79
+ S R LK D+ + +L + + + L D+ VR I P+ + + ++
Sbjct: 138 KIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGI--HPNHYVFSILVC 195
Query: 80 MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
A+ +KV EA V+ ++++ + + T+G +I SG +AM + +M P
Sbjct: 196 AYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRP 255
Query: 140 ISLPFRVILKGLIPYPEFREKVKDDFLELF 169
S+ + ++ L + ++ EK ++ FLE+
Sbjct: 256 DSIVYNSLIHSLCIFDKW-EKAEELFLEML 284
>gi|359484961|ref|XP_002273494.2| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
chloroplastic-like [Vitis vinifera]
Length = 609
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 45/76 (59%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
KE +P+++ Y ++ M R K + + +++W+++KR++V+ D+ ++ +I A+S +G
Sbjct: 462 KERGCKPNVWVYNSLMDMHGRVKNLRQVEKLWKEMKRKKVVPDRVSYTSVISAYSKAGDF 521
Query: 123 SEAMFIYNEMRSSPAT 138
M Y+E R +
Sbjct: 522 ETCMRFYHEFRMNGGV 537
>gi|334187332|ref|NP_001190970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332661695|gb|AEE87095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 510
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 12/131 (9%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+P++ Y +L A++ KV + +++DL V D +TF ++ A+ +G+ E
Sbjct: 205 QPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEA 264
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDF-----------LELFPDMIVYD 176
+ MRS+ P + F V++ EF EK++ F L F MI+
Sbjct: 265 VLTRMRSNECKPDIITFNVLIDSYGKKQEF-EKMEQTFKSLMRSKEKPTLPTFNSMIINY 323
Query: 177 PPEDLFEDQEW 187
+ + EW
Sbjct: 324 GKARMIDKAEW 334
>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Glycine max]
Length = 623
Score = 44.7 bits (104), Expect = 0.021, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 49 DQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHT 108
D+ F +K D ++ PD Y ++ R KV EA+Q+ +++KR + D +
Sbjct: 478 DRAFQLLKEMDNMK----VLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHIS 533
Query: 109 FGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+ +I +S G +A + +EM ++ P L + +++GL
Sbjct: 534 YNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGL 576
>gi|242091740|ref|XP_002436360.1| hypothetical protein SORBIDRAFT_10g001070 [Sorghum bicolor]
gi|241914583|gb|EER87727.1| hypothetical protein SORBIDRAFT_10g001070 [Sorghum bicolor]
Length = 999
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 70/139 (50%), Gaps = 6/139 (4%)
Query: 14 RLQSHPVRFDRFIKSHVSRLLKS--DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDM 71
+L S +DR I S S+ +++ ++SV + + D+ ++++ +E+ D
Sbjct: 727 KLHSAISIYDRMISSGTSQSMQTFNLMISVFGKGGKLDKA---VEMF-AAAQELGLPIDE 782
Query: 72 FFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNE 131
Y +ML + + + EA +++ +K + + + +F +I A++ SGL SEA ++E
Sbjct: 783 KMYTNMLSLYGKAGRHQEASLMFKRMKEDGIRPGKISFNSMINAYATSGLCSEAKSTFHE 842
Query: 132 MRSSPATPISLPFRVILKG 150
M+ P S + +++
Sbjct: 843 MQDCGHAPDSFSYLALIRA 861
>gi|357500061|ref|XP_003620319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495334|gb|AES76537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 496
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 50/89 (56%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
K+ +P+M+ Y ++ L + + +A+ ++EDL + + +T+ +I F ++G+
Sbjct: 386 KDQGLQPNMYTYTILINGLCKGGRPEDAQNIFEDLLVKGYNINVNTYTVMIHVFCNNGMF 445
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGL 151
EA+ + ++M + P ++ + +I++ L
Sbjct: 446 GEALAMLSKMEENGCIPNAVTYEIIIRSL 474
>gi|125575277|gb|EAZ16561.1| hypothetical protein OsJ_32034 [Oryza sativa Japonica Group]
Length = 526
Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++ Y ++ L + + V +A +V + + V+ D T+ I+ F SG P EA+
Sbjct: 114 PNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVF 173
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFRE--KVKDDFLE--LFPDMIVYDP 177
+MRS P + + ++ L E K+ D + L PD+ Y
Sbjct: 174 LKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGT 226
Score = 39.7 bits (91), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 71/150 (47%), Gaps = 7/150 (4%)
Query: 24 RFIKSHVSRLLKSDLVS---VLAEFQRQDQVFLCMKLYDV-VRKEIWYRPDMFFYRDMLM 79
+ S R LK D+ + +L + + + L D+ VR I P+ + + ++
Sbjct: 207 KIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGI--HPNHYVFSILVC 264
Query: 80 MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
A+ +KV EA V+ ++++ + + T+G +I SG +AM + +M P
Sbjct: 265 AYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRP 324
Query: 140 ISLPFRVILKGLIPYPEFREKVKDDFLELF 169
S+ + ++ L + ++ EK ++ FLE+
Sbjct: 325 DSIVYNSLIHSLCIFDKW-EKAEELFLEML 353
>gi|302757477|ref|XP_002962162.1| hypothetical protein SELMODRAFT_76220 [Selaginella moellendorffii]
gi|300170821|gb|EFJ37422.1| hypothetical protein SELMODRAFT_76220 [Selaginella moellendorffii]
Length = 484
Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 8/121 (6%)
Query: 54 CMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113
C++L+ + K PD + Y ++ + +K+ EAK + +D R V D + + +I
Sbjct: 308 CLELFKGMSKA-GLSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPDVYMYTTLI 366
Query: 114 RAFSDSGLP--SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPD 171
+ + P EA+ ++ M+ P + + ++L+GL F D+ ++F +
Sbjct: 367 SGYCRARKPRVDEALLLFQNMKDRRVWPNVITYNIVLRGLCKTGRF-----DEAYQIFQE 421
Query: 172 M 172
M
Sbjct: 422 M 422
Score = 43.1 bits (100), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 9/119 (7%)
Query: 57 LYDVVRKEIWYRPDMFFYRDMLMMLARNKK--VVEAKQVWEDLKREEVLFDQHTFGDIIR 114
L D R + PD++ Y ++ R +K V EA +++++K V + T+ ++R
Sbjct: 347 LQDAARNHVG--PDVYMYTTLISGYCRARKPRVDEALLLFQNMKDRRVWPNVITYNIVLR 404
Query: 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
+G EA I+ EM +P + F+V+ G+I + D F +F DM+
Sbjct: 405 GLCKTGRFDEAYQIFQEMFKVKCSPNRMTFKVMTMGMIHCGK-----TDKFERIFMDMV 458
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 48/110 (43%)
Query: 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100
V + +R + L K +D K+ YR D++ Y +L L R ++ EA + ++
Sbjct: 14 VGSVIRRVPSLALARKFFDWSSKQEGYRHDVYCYTRLLHHLVRARRTREAVRFFKRELCA 73
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG 150
++F II+ F + P A MRS P + V+LKG
Sbjct: 74 HCRPSLYSFTIIIQCFCNVRNPGRAWRYLGYMRSLGIPPDVTAYNVVLKG 123
>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
Length = 814
Score = 44.7 bits (104), Expect = 0.022, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+F Y ML A +V+ +++ + + + TF +I+A+++ G+ +AM I
Sbjct: 357 PDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMII 416
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
+NEMR P L + ++ L R DD +E F MI
Sbjct: 417 FNEMRDHGVKPNVLTYTTVIAALC-----RIGKMDDAMEKFNQMI 456
>gi|297736068|emb|CBI24106.3| unnamed protein product [Vitis vinifera]
Length = 568
Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 45/76 (59%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
KE +P+++ Y ++ M R K + + +++W+++KR++V+ D+ ++ +I A+S +G
Sbjct: 385 KERGCKPNVWVYNSLMDMHGRVKNLRQVEKLWKEMKRKKVVPDRVSYTSVISAYSKAGDF 444
Query: 123 SEAMFIYNEMRSSPAT 138
M Y+E R +
Sbjct: 445 ETCMRFYHEFRMNGGV 460
>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Glycine max]
Length = 556
Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Query: 89 EAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
E Q++E++KR ++ + + + +I + + G+ +A ++ EMR + + +++
Sbjct: 246 EGFQMYENMKRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILI 305
Query: 149 KGLIPYPEFREKV----KDDFLELFPDMIVYDPPEDLFED 184
GL +F E V K + + L P+++ Y+ + F D
Sbjct: 306 GGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCD 345
>gi|297727717|ref|NP_001176222.1| Os10g0495400 [Oryza sativa Japonica Group]
gi|255679525|dbj|BAH94950.1| Os10g0495400, partial [Oryza sativa Japonica Group]
Length = 438
Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++ Y ++ L + + + +A +V + + V+ D T+ I+ + SG P EA+
Sbjct: 237 PNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGT 296
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFRE--KVKDDFLE--LFPDMIVY 175
+MRS P + +R ++ L E K+ D + L PD+ Y
Sbjct: 297 LKKMRSDGVEPNVVTYRSLMNYLCKNGRCTEARKIFDSMTKRGLEPDIATY 347
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 56 KLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
K++D + K PD+ YR +L A +VE + + + R + D H F +I A
Sbjct: 330 KIFDSMTKR-GLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICA 388
Query: 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
++ +AM ++++MR P + + ++
Sbjct: 389 YAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVI 421
>gi|449467169|ref|XP_004151297.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Cucumis sativus]
gi|449518833|ref|XP_004166440.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Cucumis sativus]
Length = 609
Score = 44.3 bits (103), Expect = 0.023, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
+RP Y ++ L R K+ + +++ + D II AFS+SG EAM
Sbjct: 88 HRPTTVTYTALVAALTRQKRFKAISGLLSEMEETGIKPDSILLNAIINAFSESGNVKEAM 147
Query: 127 FIYNEMRSSPATPISLPFRVILK--GLIPYPE 156
I+ +M S P + F ++K G+I PE
Sbjct: 148 EIFQKMEESGCKPTTSTFNTLIKGYGIIRKPE 179
>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
Length = 368
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 70/143 (48%), Gaps = 9/143 (6%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
S++ + Q +VF KL+DV+ + +PD+F Y ++ + K++ EAKQ++ ++
Sbjct: 155 SLMNGYSLQAEVFEARKLFDVMITK-GCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIH 213
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYP---- 155
+ + D ++ +I G EA ++ M ++ P + ++L G
Sbjct: 214 QGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAK 273
Query: 156 EFR--EKVKDDFLELFPDMIVYD 176
FR ++ +L+ P+M++Y+
Sbjct: 274 AFRLFRAMQSTYLK--PNMVMYN 294
>gi|414881814|tpg|DAA58945.1| TPA: hypothetical protein ZEAMMB73_003881 [Zea mays]
Length = 792
Score = 44.3 bits (103), Expect = 0.023, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+F Y ++ L +++K+ EA +W+ +K V T+ ++ + + G EA+ +
Sbjct: 393 PDVFTYGCLIHWLCKHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKL 452
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
Y+EM P + + ++KG I ++K D+ L +M
Sbjct: 453 YSEMPDKGFPPNEVTYTTLMKGYI-----KKKAFDNAYALLNEM 491
>gi|357494871|ref|XP_003617724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519059|gb|AET00683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 861
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
P ++ Y++++ L + +K EA +V+ DLK D+ + +I+ F D GL +EA
Sbjct: 268 NPSIYTYQEIINGLLKRRKNDEAFRVFNDLKDRGYFPDRVMYTTVIKGFCDMGLLAEARK 327
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPEDL 181
++ EM P + V++ G +F E K L+ DM E++
Sbjct: 328 LWFEMIQKGLVPNEYTYNVMIYGYCKVRDFAEARK-----LYDDMCGRGYAENV 376
>gi|302813971|ref|XP_002988670.1| hypothetical protein SELMODRAFT_128601 [Selaginella moellendorffii]
gi|300143491|gb|EFJ10181.1| hypothetical protein SELMODRAFT_128601 [Selaginella moellendorffii]
Length = 318
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
K++ PD Y M+ R KV A Q++E++KR+ V D F ++RA S P
Sbjct: 71 KKLGLLPDTMTYSTMIDCYGRAGKVNRALQLFEEMKRKNVRLDTRVFNSLLRAVGTSYKP 130
Query: 123 SEAMFIYNEMRSSPATP 139
S I+ EM+ P
Sbjct: 131 SLVYNIFREMQYFGQVP 147
>gi|414881815|tpg|DAA58946.1| TPA: hypothetical protein ZEAMMB73_360564 [Zea mays]
Length = 792
Score = 44.3 bits (103), Expect = 0.023, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+F Y ++ L +++K+ EA +W+ +K V T+ ++ + + G EA+ +
Sbjct: 393 PDVFTYGCLIHWLCKHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKL 452
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
Y+EM P + + ++KG I ++K D+ L +M
Sbjct: 453 YSEMPDKGFPPNEVTYTTLMKGYI-----KKKAFDNAYALLNEM 491
>gi|255569678|ref|XP_002525804.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534891|gb|EEF36578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 135
Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD Y ++ L ++ V +A +++ +KR+ +L D T+ +I A +S EA +
Sbjct: 8 PDAVTYSTVIDSLCKDNFVSKALELFLKMKRQGILPDVVTYTSLIHALCNSCQGREASVL 67
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELF------PDMIVYDPPED 180
+NEM P + F V+ GL + E + + +E+ PD++ Y+ D
Sbjct: 68 FNEMLDENIIPNVVTFSVLADGL--FKEGKVSEAEGIVEVTIERGIEPDVVTYNSLMD 123
>gi|294461967|gb|ADE76539.1| unknown [Picea sitchensis]
Length = 486
Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 69/144 (47%), Gaps = 8/144 (5%)
Query: 26 IKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNK 85
I++H SR+L V L Q L M++++V ++ ++ Y ++ L R +
Sbjct: 91 IRNH-SRMLTPARVHKL--IASQTDALLAMEIFEVASRQPGFKHSYSTYHTLICKLGRAR 147
Query: 86 KVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFR 145
+ + + + ++++ + F DII + + G+P+EA+ +++M P++ F
Sbjct: 148 QFKTMEGLIQQMRKDGCPYTPGLFVDIIEIYGEVGMPNEAIKAFHQMLEFGYEPLAKHFN 207
Query: 146 VILKGLIPYPEFREKVKDDFLELF 169
V+L LI + K + L LF
Sbjct: 208 VLLIVLIEH-----KCLETALSLF 226
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Query: 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123
E Y P + +L++L +K + A +++ L + + T+ +IRA S S
Sbjct: 196 EFGYEPLAKHFNVLLIVLIEHKCLETALSLFKKLHEFGISPNTRTYNILIRAHCHSDKLS 255
Query: 124 EAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE--KVKDDFLE--LFPDMIVYD 176
A F++N+M P + ++++GL + + V D+ L PD + Y+
Sbjct: 256 HAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNKGYVPDALTYN 312
>gi|449458793|ref|XP_004147131.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g19280-like [Cucumis sativus]
gi|449503522|ref|XP_004162044.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g19280-like [Cucumis sativus]
Length = 532
Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 15/131 (11%)
Query: 56 KLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
KL D++R PD+ Y ++ L + EAK + ++L R D T+ +II
Sbjct: 335 KLLDMMRST-NVTPDVVTYNTLINGLVMRGFLQEAKDILDELIRRGFSVDVVTYTNIIHG 393
Query: 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELF------ 169
+S G EA ++ M + TP + +L G REK D+ LF
Sbjct: 394 YSTRGNFEEAFLLWYHMAENCVTPDVVTCSALLSGYC-----REKRMDEANALFCKMLDI 448
Query: 170 ---PDMIVYDP 177
PD+I+Y+
Sbjct: 449 GLKPDLILYNT 459
>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
lyrata]
gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
lyrata]
Length = 988
Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 56 KLYDVVRKEIW--YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113
K + V+R+ I + PD Y +L L K+ A ++E++KR ++ D +T+ ++
Sbjct: 466 KAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMV 525
Query: 114 RAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
+F +GL +A +NEMR TP + + ++
Sbjct: 526 DSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALI 560
>gi|297834130|ref|XP_002884947.1| hypothetical protein ARALYDRAFT_897532 [Arabidopsis lyrata subsp.
lyrata]
gi|297330787|gb|EFH61206.1| hypothetical protein ARALYDRAFT_897532 [Arabidopsis lyrata subsp.
lyrata]
Length = 528
Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Query: 37 DLVS---VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQV 93
DL+S +L EF R++ +++D+++ + P++ Y + L RNKK +A +
Sbjct: 230 DLISFNTLLEEFYRRELFVEGDRIWDLMKSKNL-APNIRSYNSRVRGLTRNKKFTDAIDL 288
Query: 94 WEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
+K E + D HT+ I A+ E M YNEM+ TP ++ + +++
Sbjct: 289 INVMKTEGISPDVHTYNAFITAYRGDNNLEEVMKWYNEMKEKGLTPDTVTYCLLI 343
>gi|356540375|ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Glycine max]
Length = 1476
Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 11/150 (7%)
Query: 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWE 95
+ ++ + + R DQ M++Y + K PD Y ++ L + KV EA V
Sbjct: 430 NTIIHMYGKQGRHDQA---MQIYRDM-KSSGRNPDAVTYTVLIDSLGKASKVEEAANVMS 485
Query: 96 DLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYP 155
++ V HT+ +I A++ +G EA +N MR S P L + V+L + +
Sbjct: 486 EMLDAGVKPTLHTYSALICAYAKAGKREEAEETFNCMRRSGIKPDRLAYSVMLDFFLRFN 545
Query: 156 EFREKVKDDFLELFPDMI--VYDPPEDLFE 183
E ++ + L+ +MI + P L+E
Sbjct: 546 EMKKA-----MGLYHEMIREGFTPDNGLYE 570
Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD Y +L +R + + + E++ + D+ T+ II + G +AM I
Sbjct: 389 PDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGRHDQAMQI 448
Query: 129 YNEMRSSPATPISLPFRVILKGL 151
Y +M+SS P ++ + V++ L
Sbjct: 449 YRDMKSSGRNPDAVTYTVLIDSL 471
>gi|413956099|gb|AFW88748.1| hypothetical protein ZEAMMB73_433087 [Zea mays]
gi|413956100|gb|AFW88749.1| hypothetical protein ZEAMMB73_433087 [Zea mays]
Length = 487
Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%)
Query: 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIY 129
D+F Y M+ + A K A + ED++ V + T+ +I A+++SGL A+ I
Sbjct: 13 DVFTYSTMMKVFADAKMWKMASNIKEDMQANGVRLNLVTWSSLINAYANSGLVDRAIEIL 72
Query: 130 NEMRSSPATPISLPFRVILKGLIPYPEF 157
EM P + F +IL + ++
Sbjct: 73 KEMIRDGCQPTAPCFNIILTACVKSCQY 100
>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Brachypodium distachyon]
Length = 651
Score = 44.3 bits (103), Expect = 0.025, Method: Composition-based stats.
Identities = 28/145 (19%), Positives = 67/145 (46%), Gaps = 9/145 (6%)
Query: 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL 97
+++ + R + ++ +D + + RPD+ Y ++ + R + +A ++W+D+
Sbjct: 407 FTTLIHGYCRDGNIEKALQFFDTISDQ-RLRPDIVTYNTLIDGMCRQGDLGKANELWDDM 465
Query: 98 KREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG------L 151
E+ + T+ +I + + G A +EM + P + + I+KG +
Sbjct: 466 HSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNV 525
Query: 152 IPYPEFREKVKDDFLELFPDMIVYD 176
+F K++ D ++ PD+I Y+
Sbjct: 526 SKGQQFLPKMRHD--KVMPDLITYN 548
Score = 42.7 bits (99), Expect = 0.079, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 18/182 (9%)
Query: 5 SLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVS----VLAEFQRQDQVFLCMKLYD- 59
++MV K LQ V D I R + D+V+ V A F+ D V M L D
Sbjct: 163 NIMVHSYCKTLQFGEV--DTVISEMEKRCVFPDVVTHNVMVDARFRAGD-VEAAMALIDS 219
Query: 60 VVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119
+V K I +P + Y +L L RN + +A++V+ + V D +F +I F +
Sbjct: 220 MVSKGI--KPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRA 277
Query: 120 GLPSEAMFIYNEMRSSPATPISLPFRVIL-----KGLIPY-PEFREKVKDDFLELFPDMI 173
G EA+ Y EMR TP + F ++ +G + + E+ ++++ L PD +
Sbjct: 278 GELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMRE--FGLMPDGV 335
Query: 174 VY 175
+Y
Sbjct: 336 IY 337
>gi|302809414|ref|XP_002986400.1| hypothetical protein SELMODRAFT_123901 [Selaginella moellendorffii]
gi|300145936|gb|EFJ12609.1| hypothetical protein SELMODRAFT_123901 [Selaginella moellendorffii]
Length = 318
Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
K++ PD Y M+ R KV A Q++E++KR+ V D F ++RA S P
Sbjct: 71 KKLGLLPDTMTYSTMIDCYGRAGKVNRALQLFEEMKRKNVRLDTRVFNSLLRAVGTSYKP 130
Query: 123 SEAMFIYNEMRSSPATP 139
S I+ EM+ P
Sbjct: 131 SLVYNIFREMQYFGHVP 147
>gi|15229115|ref|NP_189843.1| peroxidase family protein [Arabidopsis thaliana]
gi|11357999|pir||T47315 hypothetical protein T12K4.20 - Arabidopsis thaliana
gi|7523382|emb|CAB86440.1| putative protein [Arabidopsis thaliana]
gi|332644219|gb|AEE77740.1| peroxidase family protein [Arabidopsis thaliana]
Length = 150
Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 24/30 (80%)
Query: 2 SKESLMVAKELKRLQSHPVRFDRFIKSHVS 31
SKE L+ AKELKRLQ++ VR DRFI SH S
Sbjct: 8 SKEGLIAAKELKRLQTNLVRLDRFIDSHPS 37
>gi|384485437|gb|EIE77617.1| hypothetical protein RO3G_02321 [Rhizopus delemar RA 99-880]
Length = 1080
Score = 44.3 bits (103), Expect = 0.026, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 49 DQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHT 108
D+ + +YD ++ +P FFY ++ LA+ +K+ A +++E++K+ + + T
Sbjct: 756 DEATDALLIYDEAKRHD-VKPTTFFYNVVISKLAKARKLESAMKLFEEMKQFNIAPNSIT 814
Query: 109 FGDIIRAFSDSGLPSEAMFIYNEM-RSSPATPISLPFRVILKGLIPYPEFREKVKDDFLE 167
+G II A +G + A ++N+M SS P PF +++ + RE+ + F E
Sbjct: 815 YGAIISACVRAGSETLACKLFNDMLASSSFQPRVGPFNNMIQFYVRQQPNRERALEYFAE 874
Query: 168 L 168
L
Sbjct: 875 L 875
>gi|356558071|ref|XP_003547332.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Glycine max]
Length = 647
Score = 44.3 bits (103), Expect = 0.026, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
YR D+F Y +L LA+++KV K V+ED+KR D T+ +IR S EA+
Sbjct: 228 YRLDIFGYNMLLDALAKDEKVCSYK-VFEDMKRRHCEPDVFTYTIMIRMTGKSSKTDEAL 286
Query: 127 FIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176
++ M + TP + + +++ L + ++ D + LF M+ D
Sbjct: 287 ALFQAMLAKGCTPNLIGYNTMIEALA-----KGRMVDKAVLLFSKMVEND 331
Score = 36.6 bits (83), Expect = 5.8, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100
+++ F R +V + +K ++ + +PD+ Y ++ L +N V EA +++++ +
Sbjct: 479 LISSFGRAGRVDIAVKFFEELENSDC-KPDVISYNSLINCLGKNGDVDEAHMRFKEMQEK 537
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+ D T+ +I F + A +++EM + TP + + ++L L
Sbjct: 538 GLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEECTPNLITYNILLDCL 588
>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06710, mitochondrial; Flags: Precursor
gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
Length = 987
Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 56 KLYDVVRKEIW--YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113
K + V+R+ I + PD Y +L L K+ A ++E++KR ++ D +T+ ++
Sbjct: 466 KAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMV 525
Query: 114 RAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
+F +GL +A +NEMR TP + + ++
Sbjct: 526 DSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALI 560
>gi|115452331|ref|NP_001049766.1| Os03g0284900 [Oryza sativa Japonica Group]
gi|108707551|gb|ABF95346.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|108707553|gb|ABF95348.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113548237|dbj|BAF11680.1| Os03g0284900 [Oryza sativa Japonica Group]
gi|215686909|dbj|BAG90779.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 819
Score = 44.3 bits (103), Expect = 0.027, Method: Composition-based stats.
Identities = 36/155 (23%), Positives = 71/155 (45%), Gaps = 7/155 (4%)
Query: 5 SLMVAKELKRLQSHPVRFDRFIKSHVSRL-LKSDLVS---VLAEFQRQDQVFLCMKLYDV 60
++ V L + +H ++ + H+ L + DL S +L + L ++Y+
Sbjct: 281 NVYVFNSLMNVNAHSFSYNFSVYKHMQNLGVPPDLTSYNILLKTCCNAKEYKLAQEIYEE 340
Query: 61 VRKEI---WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117
++K+ + D+F Y M+ + A K A + +D++ V + T+ +I A++
Sbjct: 341 IKKKEQNGLLKLDVFTYSTMMKVFADAKMWKLASDIKQDMQSAGVRLNLVTWSSLINAYA 400
Query: 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
+SGL A+ I EM P + F +IL G +
Sbjct: 401 NSGLVDRAIEILEEMTRDGCQPTAPCFNIILTGCV 435
>gi|22128708|gb|AAM92820.1| hypothetical protein [Oryza sativa Japonica Group]
gi|31432840|gb|AAP54427.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
Japonica Group]
Length = 517
Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++ Y ++ L + + + +A +V + + V+ D T+ I+ + SG P EA+
Sbjct: 374 PNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGT 433
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFRE--KVKDDFLE--LFPDMIVY 175
+MRS P + +R ++ L E K+ D + L PD+ Y
Sbjct: 434 LKKMRSDGVEPNVVTYRSLMNYLCKNGRCTEARKIFDSMTKRGLEPDIATY 484
>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 545
Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 49/89 (55%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
KE +PD+F Y ++ L + ++ +A++V+EDL + + +T+ +I F + G
Sbjct: 435 KEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFF 494
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGL 151
E + + ++M+ + P ++ + +++ L
Sbjct: 495 DEGLAMLSKMKDNGCIPNAITYEILIHSL 523
>gi|242054943|ref|XP_002456617.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
gi|241928592|gb|EES01737.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
Length = 410
Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 43 AEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEV 102
EF+ +F M L VVR + Y ++ L R+ K+ +A Q++E ++RE +
Sbjct: 122 GEFKSARLLFDEMPLKGVVRNVVSYNI-------LIAGLCRHGKLKDAAQLFEAMRREGI 174
Query: 103 LFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG 150
TF +I + +G S A+ +N+M+++ P + + ++ G
Sbjct: 175 HPSMVTFNLLIDGYGKAGKMSNALHFFNQMKAAGLQPSVVTYNELIGG 222
>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
Length = 946
Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 56 KLYDVVRKEIW--YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113
K + V+R+ I + PD Y +L L K+ A ++E++KR ++ D +T+ ++
Sbjct: 425 KAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMV 484
Query: 114 RAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
+F +GL +A +NEMR TP + + ++
Sbjct: 485 DSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALI 519
>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
Length = 789
Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD++ Y M+ LA KV +A ++ ++ V+ D + +I+ F D GL SEA
Sbjct: 333 KPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARS 392
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
+ E+ P + +++ G+ R + D E+F +M
Sbjct: 393 LQLEISRHDCFPNVKTYSILISGMC-----RNGLTRDAQEIFNEM 432
Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD++ Y +L +L + ++ A V+ + + L + TF +I SG +A+ +
Sbjct: 159 PDVYTYNMILDVLIQKNFLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHL 218
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
++EM P + + V++ GL R K DD LF M
Sbjct: 219 FDEMTQRGILPDAFTYCVVISGLC-----RSKRVDDAYRLFDKM 257
>gi|115474201|ref|NP_001060699.1| Os07g0688100 [Oryza sativa Japonica Group]
gi|33146488|dbj|BAC79597.1| membrane-associated salt-inducible protein-like [Oryza sativa
Japonica Group]
gi|50509161|dbj|BAD30301.1| membrane-associated salt-inducible protein-like [Oryza sativa
Japonica Group]
gi|113612235|dbj|BAF22613.1| Os07g0688100 [Oryza sativa Japonica Group]
gi|215678726|dbj|BAG95163.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222637719|gb|EEE67851.1| hypothetical protein OsJ_25651 [Oryza sativa Japonica Group]
Length = 665
Score = 44.3 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++ Y ML L + A++++ + ++EV D TF +I S EA+ +
Sbjct: 543 PNVNVYNIMLHNLCKVGHFKHAQKIFWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEALDL 602
Query: 129 YNEMRSSPATPISLPFRVILKGLI 152
+ EMR+ P +L FR I+ GL+
Sbjct: 603 FKEMRTKGVEPDNLTFRYIISGLL 626
>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 997
Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 56 KLYDVVRKEIW--YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113
K + V+R+ I + PD Y +L L K+ A ++E++KR ++ D +T+ ++
Sbjct: 466 KAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMV 525
Query: 114 RAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
+F +GL +A +NEMR TP + + ++
Sbjct: 526 DSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALI 560
>gi|218200292|gb|EEC82719.1| hypothetical protein OsI_27404 [Oryza sativa Indica Group]
Length = 665
Score = 44.3 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++ Y ML L + A++++ + ++EV D TF +I S EA+ +
Sbjct: 543 PNVNVYNIMLHNLCKVGHFKHAQKIFWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEALDL 602
Query: 129 YNEMRSSPATPISLPFRVILKGLI 152
+ EMR+ P +L FR I+ GL+
Sbjct: 603 FKEMRTKGVEPDNLTFRYIISGLL 626
>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Brachypodium distachyon]
Length = 628
Score = 43.9 bits (102), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100
++A F + + V + L++ +R + + RPD+F Y +++ L + + EA + +++RE
Sbjct: 267 LIALFFKLNNVHGALGLFEEMRHQ-YCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRRE 325
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
D ++I +G +A+ ++ EM + P + + I+K L
Sbjct: 326 GCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKAL 376
>gi|357460285|ref|XP_003600424.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355489472|gb|AES70675.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 393
Score = 43.9 bits (102), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
S+L + QV + L ++ + RP+++ Y ++ L +N ++ +A++V++DL
Sbjct: 268 SLLDGLCKNHQVDKAITLLTKIKNQ-GIRPNIYTYTILVDGLCKNGRLRDAQEVYQDLLN 326
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+ D + +I G EA+ + ++M + TP + + + ++ L
Sbjct: 327 KGYQLDARIYTVMINGLCKEGFLDEALSLLSKMEDNKCTPDGVTYEITIRAL 378
>gi|297736301|emb|CBI24939.3| unnamed protein product [Vitis vinifera]
Length = 485
Score = 43.9 bits (102), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 60/128 (46%), Gaps = 1/128 (0%)
Query: 31 SRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEA 90
S L ++ L E R+++ +K++ ++RK+ WY P Y +LMML + K+ +A
Sbjct: 88 STLWPKAVLEALDEAIRENRYESALKIFGLLRKQHWYEPRCQTYTKLLMMLGKCKQPEQA 147
Query: 91 KQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS-SPATPISLPFRVILK 149
++E + E + + ++ A+ SG +A +M+S S P + +++K
Sbjct: 148 SLLFEVMLSEGLRPTLDVYTALVSAYGHSGQLDKAFCTVEDMKSVSDCKPDVYTYSILIK 207
Query: 150 GLIPYPEF 157
F
Sbjct: 208 CCTTLGRF 215
>gi|297802950|ref|XP_002869359.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315195|gb|EFH45618.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 906
Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD + Y M+ + + E V ++LK + D ++ +I+A+ G+ EA+ +
Sbjct: 803 PDHYTYNIMINIYGEQGWIDEVAGVLKELKESGLGPDLCSYNTLIKAYGIGGMVEEAVGL 862
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
EMR TP + + ++ L EF E +K
Sbjct: 863 VKEMRGKNITPDKVTYTNLVTALRKNDEFLEAIK 896
>gi|359487410|ref|XP_002273156.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Vitis vinifera]
Length = 538
Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 60/128 (46%), Gaps = 1/128 (0%)
Query: 31 SRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEA 90
S L ++ L E R+++ +K++ ++RK+ WY P Y +LMML + K+ +A
Sbjct: 88 STLWPKAVLEALDEAIRENRYESALKIFGLLRKQHWYEPRCQTYTKLLMMLGKCKQPEQA 147
Query: 91 KQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS-SPATPISLPFRVILK 149
++E + E + + ++ A+ SG +A +M+S S P + +++K
Sbjct: 148 SLLFEVMLSEGLRPTLDVYTALVSAYGHSGQLDKAFCTVEDMKSVSDCKPDVYTYSILIK 207
Query: 150 GLIPYPEF 157
F
Sbjct: 208 CCTTLGRF 215
>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
Length = 544
Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 58/124 (46%), Gaps = 4/124 (3%)
Query: 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL 97
L+S L ++ DQ ++L+ V + + P+ Y ++ + ++ +A V+ D+
Sbjct: 3 LLSGLVSARKHDQA---LRLFKEVLAGL-FAPNAHTYNVLIRGFCKGGQMHQAVSVFSDM 58
Query: 98 KREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEF 157
K +L + T ++ + G S A+ ++ EM++ P P S ++L+G
Sbjct: 59 KSSGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRV 118
Query: 158 REKV 161
R+ +
Sbjct: 119 RDAL 122
>gi|242050640|ref|XP_002463064.1| hypothetical protein SORBIDRAFT_02g037020 [Sorghum bicolor]
gi|241926441|gb|EER99585.1| hypothetical protein SORBIDRAFT_02g037020 [Sorghum bicolor]
Length = 558
Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 39 VSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLK 98
S++ + Q C ++D++ E RP++ Y +L A + EA + ++ LK
Sbjct: 334 TSIMYSYSVCGQAENCKAVFDMMVAE-GVRPNIVSYNALLGAYASHGMHTEALETFKLLK 392
Query: 99 REEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
+ D ++ ++ A+ S LP +A ++NEMR + P + + ++
Sbjct: 393 QNGFKPDIVSYTSLLNAYGRSALPEKAREVFNEMRKNACKPNKVSYNALI 442
>gi|255661196|gb|ACU25767.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
Length = 426
Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 6/125 (4%)
Query: 31 SRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIW------YRPDMFFYRDMLMMLARN 84
SRL +S + L + VF KL+ R I PD Y +L M N
Sbjct: 68 SRLKRSGITPDLVVYNSMINVFGKAKLFREARSLICEMRTXGVMPDTVSYTTLLTMYVEN 127
Query: 85 KKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPF 144
KK +EA V+ +++ + L D T +I + G+ EA ++ MR P + +
Sbjct: 128 KKFIEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLGVEPNVVSY 187
Query: 145 RVILK 149
+L+
Sbjct: 188 NTLLR 192
>gi|356528212|ref|XP_003532699.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37230-like [Glycine max]
Length = 738
Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Query: 51 VFLCMKLYDVVR-----KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFD 105
+FL ++L VR K PD+ Y ++ R KKV EA++++ ++K +++ +
Sbjct: 237 MFLSLRLDTAVRFYEDMKSRGILPDVVTYNTLINGYFRFKKVEEAEKLFVEMKGRDIVPN 296
Query: 106 QHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
+F +++ + +G +A+ ++ EM+ P ++ F +L GL + E
Sbjct: 297 VISFTTMLKGYVAAGQIDDALKVFEEMKGCGVKPNAVTFSTLLPGLCDAEKMAE 350
>gi|255557995|ref|XP_002520026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540790|gb|EEF42350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1040
Score = 43.9 bits (102), Expect = 0.033, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 56 KLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
+L+ ++++ W PD F Y ++ + K EA++ + + ++ VL F ++ A
Sbjct: 848 ELFHAMQRDGW-PPDSFTYLSLVQAYTESLKYSEAEETIDGMPKKGVLPSCSHFNHLLSA 906
Query: 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLE 167
++ +GL EA +Y ++ +S +P +R +L+G + Y + + + +F E
Sbjct: 907 YAKAGLMVEAERVYKKLLTSGLSPDLACYRAMLRGYLDYGQVEKGI--NFFE 956
>gi|326488077|dbj|BAJ89877.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 395
Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL 97
L+ L + R ++ + LY+ + K+ P+++ Y +++ L + K EA +++E+L
Sbjct: 285 LIHGLGKSGRLEEA---LSLYNDMEKK-GIAPNLYTYNSLILYLGKAGKAAEAGKMYEEL 340
Query: 98 KREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEM-----RSSPATPISLPFRVI 147
+ + T+ +IR +S SG P A Y M R + +T + LP +++
Sbjct: 341 LAKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVGGCRPNSSTYMQLPNQML 395
>gi|357502513|ref|XP_003621545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87241489|gb|ABD33347.1| Pentatricopeptide repeat [Medicago truncatula]
gi|355496560|gb|AES77763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 791
Score = 43.9 bits (102), Expect = 0.033, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 55 MKLYDVVRKEI-WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113
MKL++ ++++ + PDM Y +L +L + K+ +A VW++LK D+ T+ ++
Sbjct: 258 MKLFNEMKEDKNLFGPDMCTYNSVLSVLCKVGKINDALIVWDELKGCGYEPDEFTYTILV 317
Query: 114 RAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
R + A+ I+NEM+ + P L + +L GL + E
Sbjct: 318 RGCCRTYRMDVALRIFNEMKDNGFRPGVLVYNCVLDGLFKAAKVNE 363
>gi|357521009|ref|XP_003630793.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524815|gb|AET05269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 584
Score = 43.9 bits (102), Expect = 0.033, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 40/85 (47%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
++P + Y ++ L R K+ + ++ V D F +I AFSDSG EAM
Sbjct: 74 HKPTIITYTTLVAALTRLKRFNSIPSLLSKVEENGVKPDSILFNAMINAFSDSGKVHEAM 133
Query: 127 FIYNEMRSSPATPISLPFRVILKGL 151
I+ +M+ P + F ++KG
Sbjct: 134 KIFRKMKECGCKPTTSTFNTLIKGF 158
>gi|429851534|gb|ELA26720.1| translation regulator [Colletotrichum gloeosporioides Nara gc5]
Length = 1160
Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 70 DMFFYRDMLMMLARNKKVVEAKQVW----EDLKREEVLFDQHTFGDIIRAFSDSGLPSEA 125
D + +R L A + A+++W + + +VL + TF ++ A++++G P A
Sbjct: 503 DRWGFRKFLKFYAARGDIKSAERLWGQYVQSYQHRQVLQEPETFNHLLNAYANNGDPEGA 562
Query: 126 MFIYNEMRSS-PATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPE 179
+++EMR TP + ++LK + R K D L LF ++ V P+
Sbjct: 563 RRVFDEMRDRYGVTPSIYSWNILLKSYV-----RTKSYDGALGLFDELCVATAPD 612
>gi|218192576|gb|EEC75003.1| hypothetical protein OsI_11066 [Oryza sativa Indica Group]
Length = 668
Score = 43.9 bits (102), Expect = 0.036, Method: Composition-based stats.
Identities = 36/155 (23%), Positives = 71/155 (45%), Gaps = 7/155 (4%)
Query: 5 SLMVAKELKRLQSHPVRFDRFIKSHVSRL-LKSDLVS---VLAEFQRQDQVFLCMKLYDV 60
++ V L + +H ++ + H+ L + DL S +L + L ++Y+
Sbjct: 281 NVYVFNSLMNVNAHSFSYNFSVYKHMQNLGVPPDLTSYNILLKTCCNAKEYKLAQEIYEE 340
Query: 61 VRKEI---WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117
++K+ + D+F Y M+ + A K A + +D++ V + T+ +I A++
Sbjct: 341 IKKKEQNGLLKLDVFTYSTMMKVFADAKMWKLASDIKQDMQSAGVRLNLVTWSSLINAYA 400
Query: 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
+SGL A+ I EM P + F +IL G +
Sbjct: 401 NSGLVDRAIEILEEMTRDGCQPTAPCFNIILTGCV 435
>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
Length = 703
Score = 43.9 bits (102), Expect = 0.036, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 11/125 (8%)
Query: 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIY 129
D+F Y M+ L ++V+A +V+E + ++ + H + +I F S+A+ IY
Sbjct: 438 DVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIY 497
Query: 130 NEMRSSPATPISLPFRVILKGLIPYPEF-------REKVKDDFLELFPDMIVYDP-PEDL 181
++M + +P + + ++ GL ++ RE V++ F PD+ Y L
Sbjct: 498 SKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFT---PDITTYGSLIRGL 554
Query: 182 FEDQE 186
F D++
Sbjct: 555 FSDKK 559
Score = 36.2 bits (82), Expect = 6.7, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 39/78 (50%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
M+++D + K+ RP++ Y ML L + + E +VWE + + D T+G +I
Sbjct: 248 MRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIH 307
Query: 115 AFSDSGLPSEAMFIYNEM 132
SG A +Y+E+
Sbjct: 308 GLCRSGDVDGAARVYSEI 325
>gi|356541205|ref|XP_003539071.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g01570-like [Glycine max]
Length = 768
Score = 43.9 bits (102), Expect = 0.037, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 46/82 (56%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+ Y ++ L R KV +A V+E+L D+ T+ ++I+A S + +A+ I
Sbjct: 248 PDLCTYNSLITALCRLGKVDDAITVYEELNGSAHQPDRFTYTNLIQACSKTYRMEDAIRI 307
Query: 129 YNEMRSSPATPISLPFRVILKG 150
+N+M+S+ P +L + +L G
Sbjct: 308 FNQMQSNGFRPDTLAYNSLLDG 329
>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 719
Score = 43.9 bits (102), Expect = 0.037, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 44/82 (53%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD YR +LM + VE + ++ D++ +V+ D F ++ F+ SG +A+
Sbjct: 328 PDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMY 387
Query: 129 YNEMRSSPATPISLPFRVILKG 150
+N ++ + P ++ + ++++G
Sbjct: 388 FNSVKEAGLIPDNVIYTILIQG 409
Score = 39.3 bits (90), Expect = 0.79, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 42/88 (47%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
KE + D+ Y +L + + AK++W D+ +E+L +F ++ A G
Sbjct: 497 KEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHL 556
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKG 150
SEA +++EM S P + ++KG
Sbjct: 557 SEAFRVWDEMISKSIKPTVMICNSMIKG 584
Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 11/127 (8%)
Query: 49 DQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHT 108
+ +F M+ DVV PD+ + M+ + R+ + +A + +K ++ D
Sbjct: 350 ENIFSDMRSRDVV-------PDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVI 402
Query: 109 FGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE--KVKDDFL 166
+ +I+ + G+ SEAM + NEM + + IL GL E K+ ++
Sbjct: 403 YTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMT 462
Query: 167 E--LFPD 171
E LFPD
Sbjct: 463 ERGLFPD 469
>gi|11079489|gb|AAG29201.1|AC078898_11 hypothetical protein [Arabidopsis thaliana]
Length = 481
Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 10/148 (6%)
Query: 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWE 95
S +V +L + R D+ ++ D +P F Y ++ ++ EA +
Sbjct: 240 SIMVDILCKAGRVDEALGIVRSMD----PSICKPTTFIYSVLVHTYGTENRLEEAVDTFL 295
Query: 96 DLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYP 155
+++R + D F +I AF + + EM+S TP S +IL+ LI
Sbjct: 296 EMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERG 355
Query: 156 EFREKVKDDFLELFPDMI-VYDPPEDLF 182
E KD+ ++F MI V +P D +
Sbjct: 356 E-----KDEAFDVFRKMIKVCEPDADTY 378
Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 4/124 (3%)
Query: 58 YDVVRKEI-WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116
+DV RK I PD Y ++ M K++ A +VW+ ++++ V HTF +I
Sbjct: 361 FDVFRKMIKVCEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGL 420
Query: 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176
+ +A + EM P + F + + LI E RE V FL +++V +
Sbjct: 421 CEERTTQKACVLLEEMIEMGIRPSGVTFGRLRQLLI--KEEREDVL-KFLNEKMNVLVNE 477
Query: 177 PPED 180
P D
Sbjct: 478 PLCD 481
>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
Length = 703
Score = 43.9 bits (102), Expect = 0.037, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 11/125 (8%)
Query: 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIY 129
D+F Y M+ L ++V+A +V+E + ++ + H + +I F S+A+ IY
Sbjct: 438 DVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIY 497
Query: 130 NEMRSSPATPISLPFRVILKGLIPYPEF-------REKVKDDFLELFPDMIVYDP-PEDL 181
++M + +P + + ++ GL ++ RE V++ F PD+ Y L
Sbjct: 498 SKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFT---PDITTYGSLIRGL 554
Query: 182 FEDQE 186
F D++
Sbjct: 555 FSDKK 559
Score = 36.2 bits (82), Expect = 7.2, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 39/78 (50%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
M+++D + K+ RP++ Y ML L + + E +VWE + + D T+G +I
Sbjct: 248 MRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIH 307
Query: 115 AFSDSGLPSEAMFIYNEM 132
SG A +Y+E+
Sbjct: 308 GLCRSGDVDGAARVYSEI 325
>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Cucumis sativus]
gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Cucumis sativus]
Length = 701
Score = 43.5 bits (101), Expect = 0.038, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Query: 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIY 129
D F Y M+ L + + +A ++ +K+ + H F +I + + EA+ +
Sbjct: 428 DTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVL 487
Query: 130 NEMRSSPATPISLPFRVILKGLIPYPEFRE---KVKDDFLE-LFPDMIVY 175
EM+S P + + I+ GL F + +K+ E L PDMI Y
Sbjct: 488 REMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITY 537
Score = 41.2 bits (95), Expect = 0.21, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ-HTFGDIIRAFSDSGLPSEAMF 127
PD+ Y ++ R V+A ++W+ L E ++ T+ +I G E+M
Sbjct: 217 PDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSVYPSVETYNIMINGLCKLGKLDESME 276
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFR--EKVKDDFLE--LFPDMIVYD 176
++N M+ + +P F ++ GL F EKV + +E L PD+ Y+
Sbjct: 277 MWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYN 329
Score = 40.4 bits (93), Expect = 0.34, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 64 EIWYR--------PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
EIW R P + Y M+ L + K+ E+ ++W +K+ E D TF +I
Sbjct: 240 EIWKRLLTESSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHG 299
Query: 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
S +G + A ++ EM S +P + +L GL
Sbjct: 300 LSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGL 335
Score = 39.3 bits (90), Expect = 0.78, Method: Composition-based stats.
Identities = 45/189 (23%), Positives = 75/189 (39%), Gaps = 24/189 (12%)
Query: 10 KELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVR------- 62
K ++L SH F+ I +V + +SVL E + +D + ++
Sbjct: 457 KNRRKLNSHV--FNSLINGYVRAFKLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAER 514
Query: 63 --------KEIW---YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGD 111
KE+ +PDM Y ++ L R +KV A +W + + D
Sbjct: 515 FSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMALNLWHQCINKRLKPDLQMHNI 574
Query: 112 IIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK--DDFLE-- 167
II + A+ I+ +MR P + I++GL + E +K D LE
Sbjct: 575 IIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIMEGLYKAGDCVEALKIWDRILEAG 634
Query: 168 LFPDMIVYD 176
L PD+I Y+
Sbjct: 635 LQPDIISYN 643
>gi|357124917|ref|XP_003564143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Brachypodium distachyon]
Length = 1285
Score = 43.5 bits (101), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 32 RLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAK 91
++ KS ++ +L F + +F MK+Y+ + KE Y P+M YR M+ +L RNK+ + +
Sbjct: 691 KISKSTVILMLDAFTKAGDIFEVMKIYNGM-KEAGYLPNMHIYRSMISLLCRNKRYRDVE 749
Query: 92 QVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
+ +++R D ++ ++ +G + + +Y+ + + P
Sbjct: 750 LMVVEMERAGFEPDLTILNTLLLMYTGNGNFDKTVEVYHSILEAGLEP 797
Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 54 CMKLYDVVRK-----EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHT 108
C K D R E ++PD Y +L A+ ++V E+L R D T
Sbjct: 183 CGKAQDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGIT 242
Query: 109 FGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+ +I + G A+ +Y+EMR+ TP ++ + V++ L
Sbjct: 243 YNTMIHMYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDSL 285
>gi|413953459|gb|AFW86108.1| hypothetical protein ZEAMMB73_051838 [Zea mays]
Length = 388
Score = 43.5 bits (101), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 43/94 (45%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD++ Y ++ LAR + EA ++ + D +++ I+ + +G P AM +
Sbjct: 114 PDVYAYNALMSGLARTGMIDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEM 173
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
+ M+ S +P + + +L L F E K
Sbjct: 174 LSNMKQSTVSPDVVSYNTVLGALSHAGMFEEASK 207
>gi|302766812|ref|XP_002966826.1| hypothetical protein SELMODRAFT_11024 [Selaginella moellendorffii]
gi|300164817|gb|EFJ31425.1| hypothetical protein SELMODRAFT_11024 [Selaginella moellendorffii]
Length = 484
Score = 43.5 bits (101), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF-DQHTFGDIIRAFSDSGLPSEA 125
+RP + Y + + KK+ EA+Q+ + ++ E+ L D F +I + + G EA
Sbjct: 47 HRPSVECYTVAIAEVVAEKKMSEAQQLLKQMEEEDGLAPDSVCFNTVINGWCNEGQMEEA 106
Query: 126 MFIYNEMRSSPATPISLPFRVILKG 150
M + EMR P + + ++KG
Sbjct: 107 MRVVQEMRQKNCRPTTSTYNTLIKG 131
>gi|334183972|ref|NP_177860.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806398|sp|Q9FVX2.2|PP129_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g77360, mitochondrial; Flags: Precursor
gi|332197848|gb|AEE35969.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 517
Score = 43.5 bits (101), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 6/116 (5%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+P F Y ++ ++ EA + +++R + D F +I AF +
Sbjct: 304 KPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYR 363
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI-VYDPPEDLF 182
+ EM+S TP S +IL+ LI E KD+ ++F MI V +P D +
Sbjct: 364 VLKEMKSKGVTPNSKSCNIILRHLIERGE-----KDEAFDVFRKMIKVCEPDADTY 414
Score = 36.6 bits (83), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 4/124 (3%)
Query: 58 YDVVRKEI-WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116
+DV RK I PD Y ++ M K++ A +VW+ ++++ V HTF +I
Sbjct: 397 FDVFRKMIKVCEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGL 456
Query: 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176
+ +A + EM P + F + + LI E RE V FL +++V +
Sbjct: 457 CEERTTQKACVLLEEMIEMGIRPSGVTFGRLRQLLI--KEEREDVL-KFLNEKMNVLVNE 513
Query: 177 PPED 180
P D
Sbjct: 514 PLCD 517
>gi|242058007|ref|XP_002458149.1| hypothetical protein SORBIDRAFT_03g027690 [Sorghum bicolor]
gi|241930124|gb|EES03269.1| hypothetical protein SORBIDRAFT_03g027690 [Sorghum bicolor]
Length = 795
Score = 43.5 bits (101), Expect = 0.040, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 44/89 (49%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+F Y ++ L+++ KV EA +W+ +K V T ++ + + G EA+ +
Sbjct: 396 PDVFTYGCLIHWLSKHHKVHEAVNLWDKMKEAGVKPSIVTCHSLLLGYCEKGCMDEALKL 455
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEF 157
Y+EM P + + ++KG I F
Sbjct: 456 YSEMPGKGFPPNEVTYTTLMKGYIKKKAF 484
>gi|302755512|ref|XP_002961180.1| hypothetical protein SELMODRAFT_21211 [Selaginella moellendorffii]
gi|300172119|gb|EFJ38719.1| hypothetical protein SELMODRAFT_21211 [Selaginella moellendorffii]
Length = 497
Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF-DQHTFGDIIRAFSDSGLPSEA 125
+RP + Y + + KK+ EA+Q+ + ++ E+ L D F +I + + G EA
Sbjct: 47 HRPSVECYTVAIAEVVAEKKMSEAQQLLKQMEEEDGLAPDSVCFNTVINGWCNEGQMEEA 106
Query: 126 MFIYNEMRSSPATPISLPFRVILKG 150
M + EMR P + + ++KG
Sbjct: 107 MRVVQEMRQKNCRPTTSTYNTLIKG 131
Score = 35.8 bits (81), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 39/90 (43%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
K +PD Y + A +V E + + D+K + + T+ +I + +G+P
Sbjct: 197 KSAGMQPDAVTYNTLAKAYAAAGRVAELEDLIADMKNARLKPNLRTYAILISCYCQNGMP 256
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLI 152
+ + + ++ P + F +LKG +
Sbjct: 257 ERGLQLLSRLKFEGLHPDVVAFNTLLKGYV 286
>gi|302787078|ref|XP_002975309.1| hypothetical protein SELMODRAFT_442798 [Selaginella moellendorffii]
gi|300156883|gb|EFJ23510.1| hypothetical protein SELMODRAFT_442798 [Selaginella moellendorffii]
Length = 914
Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 45/78 (57%)
Query: 72 FFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNE 131
+ ++ + +++ V+A++++E LK + D H + ++ A+ +GLP +AM ++ E
Sbjct: 446 LIFGALIRVCSKSGNYVKAEKLFEQLKETQEELDWHYYIALMEAYGKAGLPGKAMDLFRE 505
Query: 132 MRSSPATPISLPFRVILK 149
+SP P F++I++
Sbjct: 506 TENSPTFPKFALFKIIIE 523
>gi|297797613|ref|XP_002866691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312526|gb|EFH42950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 638
Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 64/133 (48%), Gaps = 5/133 (3%)
Query: 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWE 95
+ LVS ++ + D+ +L + D+++K + P Y ++ + +K++E ++ E
Sbjct: 362 TALVSGFCKWGKIDKCYLVLD--DMIKKGLM--PSQLTYMHIMAAHEKKEKLIECLELME 417
Query: 96 DLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYP 155
+K+ E D + +IR G EA+ ++NEM + +P + F +I+ GL
Sbjct: 418 KMKQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEGNGLSPGADTFVIIINGLTSQG 477
Query: 156 EFREKVKDDFLEL 168
E D F E+
Sbjct: 478 CLLEAC-DHFKEM 489
Score = 39.7 bits (91), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100
++A ++++++ C++L + + K+I Y PD+ Y ++ + + +V EA ++W +++
Sbjct: 399 IMAAHEKKEKLIECLELMEKM-KQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEGN 457
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEF 157
+ TF II + G EA + EM + +GL P++
Sbjct: 458 GLSPGADTFVIIINGLTSQGCLLEACDHFKEM--------------VARGLFSVPQY 500
>gi|212276298|ref|NP_001130394.1| uncharacterized protein LOC100191490 [Zea mays]
gi|194689016|gb|ACF78592.1| unknown [Zea mays]
gi|238014318|gb|ACR38194.1| unknown [Zea mays]
gi|414881856|tpg|DAA58987.1| TPA: hypothetical protein ZEAMMB73_205276 [Zea mays]
Length = 371
Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 65/125 (52%), Gaps = 9/125 (7%)
Query: 60 VVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL---KREEVLFDQHTFGDIIRAF 116
V+R+E RPD+ Y ++ +AR+K++ EA +V+ L K+ +V+ D T+ ++ A
Sbjct: 214 VMREEASLRPDVGSYNALMRAMARHKRLDEAVEVYRSLEAGKKADVVPDCATYSCVVGAL 273
Query: 117 SDSGLPSEAMFI-YNEMRSSPATPISLPFRVILKGLIPYPEFRE--KVKDDFLELFPDMI 173
+G SEA + Y ++ + RV+++GL + R +V + FP+M
Sbjct: 274 CGAGRWSEAEDVFYAGVKRRKVADLGT-VRVLVRGLKDAGKGRAARRVVVGLCKKFPEM- 331
Query: 174 VYDPP 178
+D P
Sbjct: 332 -FDGP 335
>gi|356547476|ref|XP_003542138.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80880,
mitochondrial-like [Glycine max]
Length = 504
Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100
+++ F + +F ++LYD ++K W P + Y ++ +L + EA + + LK +
Sbjct: 265 MISCFSNEGNLFDSLRLYDQMKKRGWI-PGIEIYNSLVYVLTHENCLKEALRTIDKLKEQ 323
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL--IPYPEFR 158
+ TF +I ++G + A I+N M +P + + +G EF
Sbjct: 324 GLQPGSATFNSMILPLCEAGKLAGARIIFNTMVEENVSPTTETYHAFFEGTDYQGTLEFL 383
Query: 159 EKVKDDFL 166
++KD L
Sbjct: 384 TRMKDSGL 391
>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 550
Score = 43.5 bits (101), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 70/141 (49%), Gaps = 7/141 (4%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
S++ F R+++V + L D + EI YRPD+ Y ++ L + ++V +A ++++ R
Sbjct: 160 SLVNGFCRRNRVSDAVSLVDKM-VEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGR 218
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
+ + + T+ ++ +SG ++A + +M TP + + +L + + E
Sbjct: 219 KGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLE 278
Query: 160 KVKDDFLELF-----PDMIVY 175
K+ F E+ PD++ Y
Sbjct: 279 -AKEIFEEMVRMSIDPDIVTY 298
>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
Length = 745
Score = 43.5 bits (101), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P + + ++ +N+KVVEA+++ E +K + T+ ++ A+ + G ++ +
Sbjct: 464 PSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHEL 523
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLE------LFPDMIVYDPPEDLF 182
EM P + + V++KGL + E V+ LE L PD I Y+ F
Sbjct: 524 LLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQ--LLEDMRAKGLAPDQITYNTIIQCF 581
>gi|302762128|ref|XP_002964486.1| hypothetical protein SELMODRAFT_438810 [Selaginella moellendorffii]
gi|300168215|gb|EFJ34819.1| hypothetical protein SELMODRAFT_438810 [Selaginella moellendorffii]
Length = 919
Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 45/78 (57%)
Query: 72 FFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNE 131
+ ++ + +++ V+A++++E LK + D H + ++ A+ +GLP +AM ++ E
Sbjct: 446 LIFGALIRVCSKSGNYVKAEKLFEQLKETQEELDWHYYIALMEAYGKAGLPGKAMDLFRE 505
Query: 132 MRSSPATPISLPFRVILK 149
+SP P F++I++
Sbjct: 506 TENSPTFPKFALFKIIIE 523
>gi|15240232|ref|NP_200945.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171474|sp|Q9FLJ6.1|PP439_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g61370, mitochondrial; Flags: Precursor
gi|9757858|dbj|BAB08492.1| unnamed protein product [Arabidopsis thaliana]
gi|17529064|gb|AAL38742.1| unknown protein [Arabidopsis thaliana]
gi|23296891|gb|AAN13197.1| unknown protein [Arabidopsis thaliana]
gi|332010076|gb|AED97459.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 487
Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD---- 118
K++ ++ YR +L + + V EA++V +D+K + D F ++ +
Sbjct: 200 KDVISGNELSVYRSLLFGWSVQRNVKEARRVIQDMKSAGITPDLFCFNSLLTCLCERNVN 259
Query: 119 ---SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
SGL EA+ I EMRS P S+ + ++L L RE +
Sbjct: 260 RNPSGLVPEALNIMLEMRSYKIQPTSMSYNILLSCLGRTRRVRESCQ 306
>gi|449018641|dbj|BAM82043.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 805
Score = 43.5 bits (101), Expect = 0.044, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 65/151 (43%), Gaps = 12/151 (7%)
Query: 12 LKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDM 71
++L++ + +D FI + ++L F R V + ++ +R R D
Sbjct: 562 FRQLRAEGLEYDLFICN-----------ALLGAFARAKMVERAFQAFEEMRSA-GVRGDR 609
Query: 72 FFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNE 131
+ ++ AR ++ +A + +E +K+ + D T+ +I A S SG+ A ++NE
Sbjct: 610 ITFNTLITAAARAREFDKAWKAFETMKKSNISADATTYNALIDACSKSGMTELAFALFNE 669
Query: 132 MRSSPATPISLPFRVILKGLIPYPEFREKVK 162
MR + P F ++ + R +
Sbjct: 670 MRQAHLQPTIFTFNALIGACTKLQDMRRATQ 700
>gi|414881857|tpg|DAA58988.1| TPA: hypothetical protein ZEAMMB73_205276 [Zea mays]
Length = 379
Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 65/125 (52%), Gaps = 9/125 (7%)
Query: 60 VVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL---KREEVLFDQHTFGDIIRAF 116
V+R+E RPD+ Y ++ +AR+K++ EA +V+ L K+ +V+ D T+ ++ A
Sbjct: 214 VMREEASLRPDVGSYNALMRAMARHKRLDEAVEVYRSLEAGKKADVVPDCATYSCVVGAL 273
Query: 117 SDSGLPSEAMFI-YNEMRSSPATPISLPFRVILKGLIPYPEFRE--KVKDDFLELFPDMI 173
+G SEA + Y ++ + RV+++GL + R +V + FP+M
Sbjct: 274 CGAGRWSEAEDVFYAGVKRRKVADLGT-VRVLVRGLKDAGKGRAARRVVVGLCKKFPEM- 331
Query: 174 VYDPP 178
+D P
Sbjct: 332 -FDGP 335
>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 548
Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
K+ RPDM+ Y ++ L ++ ++ +A+ V+EDL + D + + +I+ F D G
Sbjct: 438 KDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFF 497
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174
+A+ + ++M + P + + +++ L F + D +L +MIV
Sbjct: 498 DKALALLSKMEDNGCIPNAKTYELVILSL-----FEKDENDTAEKLLREMIV 544
>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
Length = 913
Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 64 EIWYR--------PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
EIW R P++ Y M+ L + K E+ ++W +K+ E D +T+ +I
Sbjct: 215 EIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHG 274
Query: 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
SG A +Y EM + +P + + +L G +
Sbjct: 275 LCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYL 311
Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
++L + R ++ C++L+ V+ KE + Y ++ L N KV EA +WE L
Sbjct: 305 TMLNGYLRAGRIEECLELWKVMEKEGCR--TVVSYNILIRGLFENAKVDEAISIWELLPE 362
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
++ D T+G ++ +G ++A+ I E + + + ++ GL
Sbjct: 363 KDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLC 415
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 76/163 (46%), Gaps = 14/163 (8%)
Query: 24 RFIKSHVSR------LLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDM 77
RF + VS+ + + L++ L++ +R + + +K ++++K ++P+M Y +
Sbjct: 460 RFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVK--EMLQKG--WKPNMITYSLL 515
Query: 78 LMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPA 137
+ L + KK+ A +W + D II SG +A+ +Y+EM+
Sbjct: 516 MNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNC 575
Query: 138 TPISLPFRVILKGLIPYPEFR--EKVKDDFLE--LFPDMIVYD 176
P + +++G +F K+ D L+ L PD+I Y+
Sbjct: 576 VPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPDIISYN 618
Score = 35.8 bits (81), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
+ PD+F Y ++ LA+N + +A ++++++ V D + +I F G A
Sbjct: 155 FSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNAS 214
Query: 127 FIYNEMRSSPATPISLP-FRVILKGLIPYPEFRE 159
I+ + P+ ++P + V++ GL +F E
Sbjct: 215 EIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDE 248
>gi|21593376|gb|AAM65325.1| unknown [Arabidopsis thaliana]
Length = 487
Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD---- 118
K++ ++ YR +L + + V EA++V +D+K + D F ++ +
Sbjct: 200 KDVISGNELSVYRSLLFGWSVQRNVKEARRVIQDMKSAGITPDLFCFNSLLTCLCERNVN 259
Query: 119 ---SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
SGL EA+ I EMRS P S+ + ++L L RE +
Sbjct: 260 RNPSGLVPEALNIMLEMRSYKIQPTSMSYNILLSCLGRTRRVRESCQ 306
>gi|357457245|ref|XP_003598903.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355487951|gb|AES69154.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 767
Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
+E +PD+F Y ++ ++ + + +VW+++KR+ V D +G II + G
Sbjct: 287 REKLCKPDVFAYTALVRIMVKEGNLDGCLRVWKEMKRDRVDPDVMAYGTIIGGLAKGGRV 346
Query: 123 SEAMFIYNEMRS 134
SE ++ EM+S
Sbjct: 347 SEGYELFKEMKS 358
>gi|225425981|ref|XP_002269531.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
chloroplastic-like [Vitis vinifera]
Length = 603
Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 44/76 (57%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
KE P+++ Y ++ M R K + + +++W+++KR++V+ D+ ++ +I A+S +G
Sbjct: 461 KERGCEPNVWVYNSLMDMHGRVKNLRQVEKLWKEMKRKKVVPDRVSYTSVISAYSKAGDF 520
Query: 123 SEAMFIYNEMRSSPAT 138
M Y+E R +
Sbjct: 521 ETCMRFYHEFRMNGGV 536
>gi|297738294|emb|CBI27495.3| unnamed protein product [Vitis vinifera]
Length = 552
Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
KE P+++ Y ++ M R K + + +++W+++KR++V+ D+ ++ +I A+S +G
Sbjct: 399 KERGCEPNVWVYNSLMDMHGRVKNLRQVEKLWKEMKRKKVVPDRVSYTSVISAYSKAGDF 458
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
M Y+E R + I I+ G+ + D+ ++L DM
Sbjct: 459 ETCMRFYHEFRMNGGV-IDRVIAGIMVGIFS----KSGRVDELVKLLQDM 503
>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Vitis vinifera]
Length = 347
Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD+F + ++ L + K EA +++D+ E V+ + T+ +I AF G EA+
Sbjct: 116 KPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALK 175
Query: 128 IYNEM--RSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
+ N+M R P I+ + ++K L R + L LF DM+
Sbjct: 176 LVNDMLFRGCPLDDIT--YNGLIKALC-----RAGNIEKGLALFEDMM 216
>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 643
Score = 43.5 bits (101), Expect = 0.048, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 43/83 (51%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD Y ++ R KV EA+++ +++KR + D ++ +I +S G ++A I
Sbjct: 514 PDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTI 573
Query: 129 YNEMRSSPATPISLPFRVILKGL 151
+EM S P L + +++GL
Sbjct: 574 RDEMLSIGFNPTLLTYNALIQGL 596
>gi|449445529|ref|XP_004140525.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g01570-like [Cucumis sativus]
gi|449523383|ref|XP_004168703.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g01570-like [Cucumis sativus]
Length = 803
Score = 43.5 bits (101), Expect = 0.048, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
+ PD+ Y ++ +L KV +A VWE+LK D T+ II+ S +A
Sbjct: 281 FSPDLCTYNSIIHVLCLVGKVKDALIVWEELKGSGHEPDAFTYRIIIQGCCKSCRMDDAT 340
Query: 127 FIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176
I+NEM + P ++ + +L GL F+ + + +LF M+ D
Sbjct: 341 MIFNEMEYNGLIPDTIVYNSLLNGL-----FKARKVTEACQLFDKMVQED 385
>gi|383129385|gb|AFG45395.1| Pinus taeda anonymous locus CL3468Contig1_03 genomic sequence
Length = 67
Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++ + DM+MML RNK++ + V ++++E + D +II AF + G+ AM
Sbjct: 1 PNLSLHADMIMMLGRNKRIEGVEAVLLEMQKEGLHPDTRVCTEIIGAFINVGMVQNAMET 60
Query: 129 YNEMRSS 135
+ M+ +
Sbjct: 61 FELMKQT 67
>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100
++A + D V + L++ +R + + RPD+F Y +++ L + ++ EA + +++RE
Sbjct: 267 LMALLFKLDNVHGALGLFEEMRHQ-YCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRRE 325
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
D ++I +G +A+ ++ EM + P + + I+K L
Sbjct: 326 GCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKAL 376
Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 9/137 (6%)
Query: 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWE 95
S L+S + RQD + K+ +P Y ++ +L + V A ++E
Sbjct: 230 SALISAFCKLGRQDSAIWLLN----EMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFE 285
Query: 96 DLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYP 155
+++ + D T+ ++IR +G EA ++EMR P + V++ +I +
Sbjct: 286 EMRHQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDT----VLMNNMINFL 341
Query: 156 EFREKVKDDFLELFPDM 172
++ DD ++LF +M
Sbjct: 342 GKAGRL-DDAIKLFEEM 357
>gi|383129381|gb|AFG45391.1| Pinus taeda anonymous locus CL3468Contig1_03 genomic sequence
gi|383129382|gb|AFG45392.1| Pinus taeda anonymous locus CL3468Contig1_03 genomic sequence
gi|383129383|gb|AFG45393.1| Pinus taeda anonymous locus CL3468Contig1_03 genomic sequence
gi|383129384|gb|AFG45394.1| Pinus taeda anonymous locus CL3468Contig1_03 genomic sequence
gi|383129386|gb|AFG45396.1| Pinus taeda anonymous locus CL3468Contig1_03 genomic sequence
gi|383129387|gb|AFG45397.1| Pinus taeda anonymous locus CL3468Contig1_03 genomic sequence
gi|383129388|gb|AFG45398.1| Pinus taeda anonymous locus CL3468Contig1_03 genomic sequence
gi|383129389|gb|AFG45399.1| Pinus taeda anonymous locus CL3468Contig1_03 genomic sequence
gi|383129390|gb|AFG45400.1| Pinus taeda anonymous locus CL3468Contig1_03 genomic sequence
gi|383129391|gb|AFG45401.1| Pinus taeda anonymous locus CL3468Contig1_03 genomic sequence
gi|383129392|gb|AFG45402.1| Pinus taeda anonymous locus CL3468Contig1_03 genomic sequence
gi|383129393|gb|AFG45403.1| Pinus taeda anonymous locus CL3468Contig1_03 genomic sequence
gi|383129394|gb|AFG45404.1| Pinus taeda anonymous locus CL3468Contig1_03 genomic sequence
gi|383129395|gb|AFG45405.1| Pinus taeda anonymous locus CL3468Contig1_03 genomic sequence
gi|383129396|gb|AFG45406.1| Pinus taeda anonymous locus CL3468Contig1_03 genomic sequence
Length = 67
Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++ + DM+MML RNK++ + V ++++E + D +II AF + G+ AM
Sbjct: 1 PNLSLHADMIMMLGRNKRIEGVEAVLLEMQKEGLRPDTRVCTEIIGAFINVGMVQNAMET 60
Query: 129 YNEMRSS 135
+ M+ +
Sbjct: 61 FELMKQT 67
>gi|357142282|ref|XP_003572519.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 706
Score = 43.5 bits (101), Expect = 0.049, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 11/114 (9%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P+ + Y +L L K+ +A+++ E++ R + D TFG +I +F SGL AM I
Sbjct: 188 PNSYAYNTLLKGLCSAKQWGDAEELVEEMTRNDSPPDDLTFGMLIHSFCQSGLVDRAMGI 247
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELF------PDMIVYD 176
+ M TP ++ + I+ +E L LF PD+ Y+
Sbjct: 248 LDRMSKCGCTPGAIVYNEIISCFAELGRVKEA-----LHLFSCMPCKPDIFSYN 296
Score = 39.7 bits (91), Expect = 0.67, Method: Composition-based stats.
Identities = 43/190 (22%), Positives = 81/190 (42%), Gaps = 58/190 (30%)
Query: 33 LLKSDLVSVLAEFQRQDQ---VFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVE 89
++ ++++S AE R + +F CM +PD+F Y +L L R ++ +
Sbjct: 261 IVYNEIISCFAELGRVKEALHLFSCMPC----------KPDIFSYNAVLKGLCRAERWED 310
Query: 90 AKQVWEDLKR-----EEVLF------------------------------DQHTFGDIIR 114
A ++ ++ R +EV F D T+ +I
Sbjct: 311 AGELITEMVRKDCSPDEVTFNTVISFLCHKGLVDCALEVVDQMPKYGRKPDNFTYSALIN 370
Query: 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174
AFS+ G +A+ + +RS P +P ++ ++ +LKGL R+ +D +L +M+
Sbjct: 371 AFSEQGCVEDALEL---LRSMPCSPNTVCYKSVLKGLC-----RDGQWEDVGQLIGEMVR 422
Query: 175 YD--PPEDLF 182
D P E +F
Sbjct: 423 NDCAPDEMVF 432
>gi|296090648|emb|CBI41047.3| unnamed protein product [Vitis vinifera]
Length = 514
Score = 43.1 bits (100), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
+E + PD+ Y ++L A K+V+A + ++++R+E + +F +I+A
Sbjct: 146 REAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQALCAKKKM 205
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
EAM ++ EM+S ++ + ++ G + K+ + EL +MI
Sbjct: 206 EEAMRVFFEMQSCGCPADAVTYTTLISGFCKWG----KISKGY-ELLDNMI 251
>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
Length = 1106
Score = 43.1 bits (100), Expect = 0.050, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123
E W PD+F ++ M + + V++A QV++++ R +V+ ++ +I ++ G
Sbjct: 55 EAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVI----SWNSLISCYAQQGFKK 110
Query: 124 EAMFIYNEMRSSPATPISLPFRVIL 148
+A ++ EM+++ P + + IL
Sbjct: 111 KAFQLFEEMQNAGFIPNKITYISIL 135
>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Brachypodium distachyon]
Length = 554
Score = 43.1 bits (100), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/131 (19%), Positives = 65/131 (49%), Gaps = 7/131 (5%)
Query: 44 EFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVL 103
+F R ++ K++D +R+ + +P + + ++ + R + + +++++ V
Sbjct: 195 DFVRLGELVSARKVFDEMRRSV--QPTVVTFNTLISGMCRARDLDAVDGLYKEMSDVGVK 252
Query: 104 FDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKD 163
D +T+G +I+ F +G A+ ++NEMR + P ++ F ++ +E +
Sbjct: 253 PDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDA-----HCKEGNVN 307
Query: 164 DFLELFPDMIV 174
++L+ DM V
Sbjct: 308 AGMDLYQDMRV 318
>gi|302761046|ref|XP_002963945.1| hypothetical protein SELMODRAFT_82351 [Selaginella moellendorffii]
gi|300167674|gb|EFJ34278.1| hypothetical protein SELMODRAFT_82351 [Selaginella moellendorffii]
Length = 376
Score = 43.1 bits (100), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 45/84 (53%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++ + + L + K + EA QV+E L+++ ++ D +T+ +I D G +A+ +
Sbjct: 268 PELVHFNSFMSALCQRKLISEAFQVYEQLQKKGLVPDTYTYTILIGGLCDVGRTDQALSL 327
Query: 129 YNEMRSSPATPISLPFRVILKGLI 152
+ M + P S+ + ++ GL+
Sbjct: 328 KDTMIQNNCKPDSVTYGILRAGLL 351
>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Vitis vinifera]
Length = 746
Score = 43.1 bits (100), Expect = 0.051, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 69/134 (51%), Gaps = 4/134 (2%)
Query: 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123
+I PD Y +L+ RN +++A+++++++ + V+ D +F +I S +G
Sbjct: 352 KIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLD 411
Query: 124 EAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE--KVKDDFLE--LFPDMIVYDPPE 179
+A+ + +M+++ P ++ + +++ G E KV+D+ LE D++ Y+
Sbjct: 412 QALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTIL 471
Query: 180 DLFEDQEWRRESDE 193
+ ++ E+DE
Sbjct: 472 NGLCKEKMLSEADE 485
Score = 37.7 bits (86), Expect = 2.5, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD+ Y ++ + ++ + ++W D+ + + ++G +I + + G SEA
Sbjct: 531 KPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFR 590
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK-DDFLE------LFPDMIVYD 176
+++EM + I+KG Y VK D+FL + PD I Y+
Sbjct: 591 LWDEMVEKGFEATIITCNTIVKG---YCRAGNAVKADEFLSNMLLKGIVPDGITYN 643
>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 43.1 bits (100), Expect = 0.051, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 69/134 (51%), Gaps = 4/134 (2%)
Query: 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123
+I PD Y +L+ RN +++A+++++++ + V+ D +F +I S +G
Sbjct: 195 KIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLD 254
Query: 124 EAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE--KVKDDFLE--LFPDMIVYDPPE 179
+A+ + +M+++ P ++ + +++ G E KV+D+ LE D++ Y+
Sbjct: 255 QALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTIL 314
Query: 180 DLFEDQEWRRESDE 193
+ ++ E+DE
Sbjct: 315 NGLCKEKMLSEADE 328
Score = 37.7 bits (86), Expect = 2.5, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD+ Y ++ + ++ + ++W D+ + + ++G +I + + G SEA
Sbjct: 374 KPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFR 433
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK-DDFLE------LFPDMIVYD 176
+++EM + I+KG Y VK D+FL + PD I Y+
Sbjct: 434 LWDEMVEKGFEATIITCNTIVKG---YCRAGNAVKADEFLSNMLLKGIVPDGITYN 486
>gi|302769109|ref|XP_002967974.1| hypothetical protein SELMODRAFT_88078 [Selaginella moellendorffii]
gi|300164712|gb|EFJ31321.1| hypothetical protein SELMODRAFT_88078 [Selaginella moellendorffii]
Length = 376
Score = 43.1 bits (100), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 45/84 (53%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++ + + L + K + EA QV+E L+++ ++ D +T+ +I D G +A+ +
Sbjct: 268 PELVHFNSFMSALCQRKLISEAFQVYEQLQKKGLVPDTYTYTILIGGLCDVGRTDQALSL 327
Query: 129 YNEMRSSPATPISLPFRVILKGLI 152
+ M + P S+ + ++ GL+
Sbjct: 328 KDTMIQNNCKPDSVTYGILRAGLL 351
>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 621
Score = 43.1 bits (100), Expect = 0.052, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+ Y ++ L + +V A ++E+++ + D T+ II +G +A +
Sbjct: 357 PDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRL 416
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFRE--KVKDDFLE--LFPDMIVYD 176
++EMR +P + + L L F+E K+ +D E L PD+ YD
Sbjct: 417 FSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYD 468
Score = 39.3 bits (90), Expect = 0.74, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 9/135 (6%)
Query: 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL 97
L+S L + R + F L+ +R E PD F Y ++ L + + +A ++ E++
Sbjct: 120 LISTLGKAGRLSEAF---TLFAEMR-ERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEM 175
Query: 98 KREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEF 157
+R D T+ +I G +A ++ EM+ P S+ F ++ L
Sbjct: 176 ERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDAL-----G 230
Query: 158 REKVKDDFLELFPDM 172
+ DD LEL +M
Sbjct: 231 KAGRVDDALELLDEM 245
Score = 38.1 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 43/83 (51%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+ Y ++ L ++ + V+A ++++++KR D TF ++ A +G +A+ +
Sbjct: 182 PDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALEL 241
Query: 129 YNEMRSSPATPISLPFRVILKGL 151
+EM+ P + + ++ G
Sbjct: 242 LDEMKERGVKPGVVTYNALIAGF 264
Score = 37.0 bits (84), Expect = 4.2, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 43/84 (51%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD+ Y ++ L + ++ EA QV + +++E D T+ +I +GL ++A
Sbjct: 286 KPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGR 345
Query: 128 IYNEMRSSPATPISLPFRVILKGL 151
+++ M+S P + + ++ L
Sbjct: 346 LFDRMKSKGCNPDVVTYSTLITAL 369
>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Brachypodium distachyon]
Length = 966
Score = 43.1 bits (100), Expect = 0.052, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 59/107 (55%), Gaps = 7/107 (6%)
Query: 42 LAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE 101
+ +F++ Q+ L +++RK + PD Y ++ L + KKV ++ +++++KR
Sbjct: 430 VGKFEKAFQI-----LKEMMRKG--FVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAG 482
Query: 102 VLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
V D +T+ +I +F +GL +A ++EMRS +P + + +L
Sbjct: 483 VNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALL 529
>gi|302780869|ref|XP_002972209.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
gi|300160508|gb|EFJ27126.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
Length = 363
Score = 43.1 bits (100), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 46/94 (48%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD++ Y ++ + K++VEA +V + + + E + + +I AF +G P+ A +
Sbjct: 148 PDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKGECQPNVVIYTALIDAFCSAGKPTVAYKL 207
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
EM + P ++ +R ++ G + E K
Sbjct: 208 LEEMVGNGVQPNAITYRSLIGGFCGTGDLEEAHK 241
>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Vitis vinifera]
gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 43.1 bits (100), Expect = 0.054, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD F Y ++ ++ +A+ ++ ++ + + D ++ +I + SG EA +
Sbjct: 341 PDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKL 400
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYD-PPE 179
Y EM P + + +L GL FRE D LF +M V+D PE
Sbjct: 401 YREMMCKEIMPTVITYNTLLTGL-----FREGKVRDAWNLFGEMKVHDLTPE 447
>gi|357515141|ref|XP_003627859.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355521881|gb|AET02335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 731
Score = 43.1 bits (100), Expect = 0.054, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 59/135 (43%), Gaps = 14/135 (10%)
Query: 54 CMKLYDVVRKEIWYR--------PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFD 105
C K DV R E PD+F Y ++ + + EA V + ++RE + D
Sbjct: 210 CSKSRDVERAEFILNEMEVKGVVPDIFTYNTLIALYCKKGLHYEALSVQDKMEREGINLD 269
Query: 106 QHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDF 165
++ +I F G EAM ++ E++ A P + + ++ G EF E ++
Sbjct: 270 IVSYNSLIYGFCKEGKMREAMRMFGEIKD--AIPNHVTYTTLIDGYCKANEFEEALRLRE 327
Query: 166 LE----LFPDMIVYD 176
+ L+P ++ Y+
Sbjct: 328 MMVAKGLYPGVVTYN 342
>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 64/133 (48%), Gaps = 4/133 (3%)
Query: 23 DRFIKSHVSRLLKSDLV---SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLM 79
+R ++ +++ + D V +++ F + + KL+D + K+ PD Y ++
Sbjct: 65 ERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQ-RIVPDFIAYTAVIC 123
Query: 80 MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
L R K++EA +V+ + V D+ T+ +I + SG +A ++N+M S TP
Sbjct: 124 GLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTP 183
Query: 140 ISLPFRVILKGLI 152
+ + + GL
Sbjct: 184 NVVTYTALADGLC 196
>gi|255556314|ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541506|gb|EEF43055.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 719
Score = 43.1 bits (100), Expect = 0.055, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 46/94 (48%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+F + ++ R KV +AK+++ + ++ D +T+ I+ F SG +EA +
Sbjct: 600 PDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFIKVFCQSGRFNEAKEL 659
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
+ M ++ P S +IL L+ +F K
Sbjct: 660 FLSMEANGCMPDSFTCNIILDALVKQDQFEAAQK 693
>gi|359496995|ref|XP_003635394.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g65820-like [Vitis vinifera]
Length = 622
Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
+E + PD+ Y ++L A K+V+A + ++++R+E + +F +I+A
Sbjct: 254 REAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQALCAKKKM 313
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
EAM ++ EM+S ++ + ++ G + K+ + EL +MI
Sbjct: 314 EEAMRVFFEMQSCGCPADAVTYTTLISGFCKWG----KISKGY-ELLDNMI 359
>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Cucumis sativus]
Length = 628
Score = 43.1 bits (100), Expect = 0.056, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 43/83 (51%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD + ++ R KV EA+++++++KR + D +F +I +S G +A +
Sbjct: 499 PDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRV 558
Query: 129 YNEMRSSPATPISLPFRVILKGL 151
NEM + P L + +++GL
Sbjct: 559 RNEMLDTGFNPTVLTYNALVQGL 581
>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Cucumis sativus]
Length = 628
Score = 43.1 bits (100), Expect = 0.056, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 43/83 (51%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD + ++ R KV EA+++++++KR + D +F +I +S G +A +
Sbjct: 499 PDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRV 558
Query: 129 YNEMRSSPATPISLPFRVILKGL 151
NEM + P L + +++GL
Sbjct: 559 RNEMLDTGFNPTVLTYNALVQGL 581
Score = 36.2 bits (82), Expect = 6.9, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+ + ++ N V A ++ +D+ R +V D+ TF I++ G EA +
Sbjct: 464 PDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEAREL 523
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDF 165
++EM+ P + F ++ G R +KD F
Sbjct: 524 FDEMKRRGIKPDHISFNTLISGY----SRRGDIKDAF 556
>gi|356503440|ref|XP_003520516.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41720-like [Glycine max]
Length = 832
Score = 43.1 bits (100), Expect = 0.057, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 44/77 (57%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
K+ +RPD+ Y +L R++K +A+Q+++ +KR ++ + ++ +I A+ +GL
Sbjct: 390 KQNGFRPDIVSYTSLLNAYGRSQKPHKARQIFDRMKRNKLKPNLVSYNALIDAYGSNGLL 449
Query: 123 SEAMFIYNEMRSSPATP 139
++A+ I EM P
Sbjct: 450 ADAIKILREMEQEGIQP 466
>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 43.1 bits (100), Expect = 0.057, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 48/94 (51%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++ Y ++ ++K++ EAK++ ++ + + D T+ +++ G P EA+ +
Sbjct: 374 PNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNL 433
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
+ EM SS P + + ++L G + E +K
Sbjct: 434 FKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALK 467
>gi|413934035|gb|AFW68586.1| hypothetical protein ZEAMMB73_127077 [Zea mays]
Length = 800
Score = 43.1 bits (100), Expect = 0.058, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 41/89 (46%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
KE + PD F Y +L L + A+ + ++ R V+ D HT+ +I L
Sbjct: 380 KEKGFTPDTFCYNTLLKALCDAGDLDGARSLMSEMVRNNVVLDIHTYTTMIIGLCKEQLV 439
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGL 151
EAM +++ M P + + V++ GL
Sbjct: 440 DEAMQVFDGMVEVGCHPSVMTYNVLIDGL 468
>gi|297744686|emb|CBI37948.3| unnamed protein product [Vitis vinifera]
Length = 1550
Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL 97
L+SV A Q F ++L +E + D Y ++ A++ KV +V+ ++
Sbjct: 933 LMSVCATSQDSAGAFQVLQLV----REAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM 988
Query: 98 KREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
EV + HT+G +I +G ++A Y MRS P + F ++
Sbjct: 989 VNAEVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVEPDRVVFNALI 1039
>gi|357458279|ref|XP_003599420.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488468|gb|AES69671.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 511
Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%)
Query: 57 LYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116
+++++R + WY P Y +LMML++ K+ EA Q++E + E + ++ A+
Sbjct: 118 IFELLRNQYWYEPRCQTYTKLLMMLSKCKQPKEASQLYETMLFEGLKPTVDVLTALVSAY 177
Query: 117 SDSGLPSEAMFIYNEMRS 134
SGL A +M+S
Sbjct: 178 GQSGLFRHAFSTIEDMKS 195
>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
Length = 850
Score = 43.1 bits (100), Expect = 0.060, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 69/134 (51%), Gaps = 4/134 (2%)
Query: 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123
+I PD Y +L+ RN +++A+++++++ + V+ D +F +I S +G
Sbjct: 456 KIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLD 515
Query: 124 EAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE--KVKDDFLE--LFPDMIVYDPPE 179
+A+ + +M+++ P ++ + +++ G E KV+D+ LE D++ Y+
Sbjct: 516 QALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTIL 575
Query: 180 DLFEDQEWRRESDE 193
+ ++ E+DE
Sbjct: 576 NGLCKEKMLSEADE 589
Score = 37.7 bits (86), Expect = 2.5, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD+ Y ++ + ++ + ++W D+ + + ++G +I + + G SEA
Sbjct: 635 KPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFR 694
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK-DDFLE------LFPDMIVYD 176
+++EM + I+KG Y VK D+FL + PD I Y+
Sbjct: 695 LWDEMVEKGFEATIITCNTIVKG---YCRAGNAVKADEFLSNMLLKGIVPDGITYN 747
>gi|15220741|ref|NP_176416.1| mitochondrial editing factor 9 [Arabidopsis thaliana]
gi|75097094|sp|O04590.1|PPR88_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62260, mitochondrial; Flags: Precursor
gi|2160154|gb|AAB60776.1| F19K23.18 gene product [Arabidopsis thaliana]
gi|332195821|gb|AEE33942.1| mitochondrial editing factor 9 [Arabidopsis thaliana]
Length = 656
Score = 43.1 bits (100), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 73/139 (52%), Gaps = 11/139 (7%)
Query: 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL 97
L S+L+ + L M+++ +V K + PD+ + ++ M +R +++E++++++++
Sbjct: 412 LTSLLSASTGLVNLRLGMQMHQIVVKTV--IPDVPVHNALITMYSRCGEIMESRRIFDEM 469
Query: 98 K-REEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156
K + EV+ T+ +I ++ G SEA+ ++ M+S+ P + F +L +
Sbjct: 470 KLKREVI----TWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLNAC-AHAG 524
Query: 157 FREKVKDDFLELFPDMIVY 175
++ K F+ + M VY
Sbjct: 525 LVDEAKAQFVSM---MSVY 540
>gi|242084176|ref|XP_002442513.1| hypothetical protein SORBIDRAFT_08g021140 [Sorghum bicolor]
gi|241943206|gb|EES16351.1| hypothetical protein SORBIDRAFT_08g021140 [Sorghum bicolor]
Length = 157
Score = 43.1 bits (100), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
RP++ Y +L A +V+ ++ + + + + H F +I+A+++ G+ A
Sbjct: 26 RPNIVSYLILLNRYATKGCLVDMTDLFNLMLGDSIAPNSHIFSVLIKAYANCGMLDRATI 85
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
I+NEMR P + + ++ L R DD +E F M+
Sbjct: 86 IFNEMREQGVKPNVVTYLTVIAALC-----RIGKMDDAVEKFNQMV 126
>gi|449494638|ref|XP_004159605.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49730-like [Cucumis sativus]
Length = 664
Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
KE + PD+ Y ++L A+ K+ +A + ++K+ + +F +I++F +
Sbjct: 296 KEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKM 355
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI--VYDPPE 179
EAM I+ EM+ S + + ++ G + D E+ DMI +DP +
Sbjct: 356 DEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGN-----TDKAYEILDDMIQKGHDPSQ 409
>gi|297834714|ref|XP_002885239.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
gi|297331079|gb|EFH61498.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
Length = 1429
Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
Query: 53 LCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDI 112
L ++L D+VR RPD Y +L +R+ + A +V+ED++ D T+ +
Sbjct: 280 LVVELLDMVRNS-GLRPDAITYNTLLSACSRDSNLEGAVKVFEDMEAHRCQPDLWTYNAM 338
Query: 113 IRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
I + GL +EA ++ E+ +P ++ + +L Y RE+ + E++ M
Sbjct: 339 ISVYGRCGLAAEAERLFIELELKGFSPDAVTYNSLL-----YAFARERNTEKVKEVYQQM 393
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 66/146 (45%), Gaps = 7/146 (4%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
+++ + +Q Q+ L ++LY ++ PD Y ++ L + + VEA + ++
Sbjct: 407 TIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRSVEAAALMSEMLD 466
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
+ T+ +I ++ +G EA ++ M S P +L + V+L L+ E R+
Sbjct: 467 VGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRK 526
Query: 160 KVKDDFLELFPDMIV--YDPPEDLFE 183
L+ DMI + P L+E
Sbjct: 527 A-----WVLYRDMISDGHTPSHSLYE 547
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
+ PD Y +L AR + + K+V++ +++ D+ T+ II + G A+
Sbjct: 363 FSPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLAL 422
Query: 127 FIYNEMRS-SPATPISLPFRVILKGL 151
+Y +M+ S P ++ + V++ L
Sbjct: 423 QLYKDMKGLSGRNPDAITYTVLIDSL 448
>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63130, mitochondrial; Flags: Precursor
gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 630
Score = 43.1 bits (100), Expect = 0.063, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 24 RFIKSHVSRLLKSDLVSVLA---EFQRQDQVFLCMKLYD-VVRKEIWYRPDMFFYRDMLM 79
R + + R + ++V+ A F ++ ++ KLYD ++++ I PD+F Y ++
Sbjct: 312 RLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI--DPDIFTYSSLIN 369
Query: 80 MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
+ ++ EAK ++E + ++ + T+ +I+ F + E M ++ EM
Sbjct: 370 GFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVG 429
Query: 140 ISLPFRVILKGLIPYPE-------FREKVKDDFLELFPDMIVY 175
++ + ++ G E F++ V D L PD++ Y
Sbjct: 430 NTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVL---PDIMTY 469
>gi|302784708|ref|XP_002974126.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
gi|300158458|gb|EFJ25081.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
Length = 538
Score = 43.1 bits (100), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++F Y +L L R+ K A++V++++KR + T+G +I+ S +G EA+ +
Sbjct: 121 PNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRV 180
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
E RS + LP VI I + DD L+ +M
Sbjct: 181 MIEQRS-----LELPTDVITCTTIVGGLCKASRLDDALKFMEEM 219
Score = 39.3 bits (90), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
Y P +F Y ++ L R +V++A +V E + E ++ + T+ ++ S A
Sbjct: 84 YTPTVFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAR 143
Query: 127 FIYNEMRSSPATPISLPFRVILKGLIPYPEFREK----VKDDFLELFPDMIV 174
++ EM+ + P + + +++ L E E ++ LEL D+I
Sbjct: 144 EVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVIT 195
>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63070, mitochondrial; Flags: Precursor
gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 590
Score = 43.1 bits (100), Expect = 0.064, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 62/131 (47%), Gaps = 3/131 (2%)
Query: 24 RFIKSHVSRLLKSDLV---SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMM 80
R + + + + DLV +++ F ++ ++ KLYD + K PD+ Y ++
Sbjct: 306 RLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKG 365
Query: 81 LARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPI 140
+ K+V E +V+ ++ + ++ + T+ +I F + A ++ +M S P
Sbjct: 366 FCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPD 425
Query: 141 SLPFRVILKGL 151
+ + ++L GL
Sbjct: 426 IMTYNILLDGL 436
Score = 40.8 bits (94), Expect = 0.28, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 14/123 (11%)
Query: 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123
E+ Y+PD + ++ L ++ K EA + E + + D T+G +I G P
Sbjct: 173 EMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPD 232
Query: 124 EAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELF---------PDMIV 174
A+ + N+M + + I+ GL Y K DD +LF PD+
Sbjct: 233 LALNLLNKMEKGKIEADVVIYNTIIDGLCKY-----KHMDDAFDLFNKMETKGIKPDVFT 287
Query: 175 YDP 177
Y+P
Sbjct: 288 YNP 290
Score = 38.9 bits (89), Expect = 0.96, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 6/106 (5%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD+F Y ++ L + +A ++ D+ + + D F +I AF G EA
Sbjct: 282 KPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEK 341
Query: 128 IYNEM-RSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
+Y+EM +S P + + ++KG Y E +E+F +M
Sbjct: 342 LYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEG-----MEVFREM 382
>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
Length = 631
Score = 43.1 bits (100), Expect = 0.064, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD Y ++ L + KV EA ++ ED+ R+ ++ D T+ +I S G +A
Sbjct: 368 PDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSF 427
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
+ M+ +P + + +L GL + + D+ +LF +M
Sbjct: 428 FGMMKRRKHSPDVVTYNTLLNGLK-----KLRRTDEACDLFDEM 466
>gi|297842515|ref|XP_002889139.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334980|gb|EFH65398.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 482
Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 10/148 (6%)
Query: 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWE 95
S +V +L + R D+ ++ D +P F Y ++ ++ EA +
Sbjct: 241 SIMVDILCKAGRVDEALGIVRSMD----PSICKPTTFIYSVLVHTYGTETRLEEAVDTFL 296
Query: 96 DLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYP 155
+++R + D F +I AF + + EM+S TP S +IL+ LI
Sbjct: 297 EMERSGMKADVAVFNSLIGAFCKTNRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIDRG 356
Query: 156 EFREKVKDDFLELFPDMI-VYDPPEDLF 182
E KD+ ++F MI V +P D +
Sbjct: 357 E-----KDEAFDVFRKMIKVCEPDADTY 379
Score = 35.8 bits (81), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 58 YDVVRKEI-WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116
+DV RK I PD Y M+ M K++ A +VW+ ++++ V HTF +I
Sbjct: 362 FDVFRKMIKVCEPDADTYTMMIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGL 421
Query: 117 SDSGLPSEAMFIYNEM-----RSSPAT 138
+ +A + EM R S AT
Sbjct: 422 CEEPNTQKACVLLEEMIEMGIRPSGAT 448
>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
Length = 816
Score = 43.1 bits (100), Expect = 0.064, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+F Y ML A +V+ +++ + + + TF +I+A+++ G+ +AM I
Sbjct: 359 PDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMII 418
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
+NEMR P + + ++ L R DD +E F MI
Sbjct: 419 FNEMRDHGVKPHVVTYMTVIAALC-----RIGKMDDAMEKFNQMI 458
>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 784
Score = 42.7 bits (99), Expect = 0.065, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD Y +L +L + K+ EA+ + D+K +L +++TF ++ + G EA +
Sbjct: 245 PDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQV 304
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFRE--KVKDDF--LELFPDMIVYD 176
+ M + P + +++ GL + E ++KD+ L+L PD++ Y+
Sbjct: 305 IDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYN 356
Score = 37.7 bits (86), Expect = 2.4, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
Y D Y ++M ++ K VEA ++W+++K +E++ T+ +I SG +++
Sbjct: 488 YFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSI 547
Query: 127 FIYNEMRSSPATPISLPFRVILKG 150
NE+ S P + I+ G
Sbjct: 548 DKLNELLESGLVPDETTYNTIILG 571
>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Brachypodium distachyon]
Length = 692
Score = 42.7 bits (99), Expect = 0.066, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 42/83 (50%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
RPD+ Y ++ + ++ A + ++KRE V+ + TF + AF +G+ EAM
Sbjct: 261 RPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMK 320
Query: 128 IYNEMRSSPATPISLPFRVILKG 150
++ +MR P + + ++ G
Sbjct: 321 LFAQMRMKGMKPNEVTYTCLVDG 343
>gi|302765176|ref|XP_002966009.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
gi|300166823|gb|EFJ33429.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
Length = 413
Score = 42.7 bits (99), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD Y ++ L + KV EA ++ ED+ R+ ++ D T+ +I S G +A
Sbjct: 150 PDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSF 209
Query: 129 YNEMRSSPATPISLPFRVILKGL 151
+ M+ +P + + +L GL
Sbjct: 210 FGMMKRRKHSPDVVTYNTLLNGL 232
>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 988
Score = 42.7 bits (99), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 64/122 (52%), Gaps = 7/122 (5%)
Query: 61 VRKEIWYR---PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117
+R+E+ R P + Y ++ L R +V +A++ + + E+++ D ++ +I +S
Sbjct: 299 LRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYS 358
Query: 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYP--EFREKVKDDFLE--LFPDMI 173
G +EA+ +++E+RS P + + ++ G + + +KDD ++ L PD++
Sbjct: 359 RLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVV 418
Query: 174 VY 175
+
Sbjct: 419 TF 420
>gi|26450121|dbj|BAC42180.1| unknown protein [Arabidopsis thaliana]
Length = 217
Score = 42.7 bits (99), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P M+ Y+ ++ L NKK +EA ++++LK + D+ + +IR F + G A +
Sbjct: 15 PSMYIYQKIIKGLCMNKKQLEAYCIFKNLKDKGYAPDRVVYTTMIRGFCEKGWLGSARKL 74
Query: 129 YNEMRSSPATPISLPFRVILKG 150
+ EM P + VI+ G
Sbjct: 75 WFEMIKKGMRPNEFAYNVIIHG 96
>gi|449463822|ref|XP_004149630.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49730-like [Cucumis sativus]
Length = 641
Score = 42.7 bits (99), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
KE + PD+ Y ++L A+ K+ +A + ++K+ + +F +I++F +
Sbjct: 273 KEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKM 332
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI--VYDPPE 179
EAM I+ EM+ S + + ++ G + D E+ DMI +DP +
Sbjct: 333 DEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGN-----TDKAYEILDDMIQKGHDPSQ 386
>gi|302770855|ref|XP_002968846.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
gi|300163351|gb|EFJ29962.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
Length = 538
Score = 42.7 bits (99), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++F Y +L L R+ K A++V++++KR + T+G +I+ S +G EA+ +
Sbjct: 121 PNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRV 180
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
E RS + LP VI I + DD L+ +M
Sbjct: 181 MIEQRS-----LELPTDVITCTTIVGGLCKASRLDDALKFMEEM 219
Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
Y P +F Y ++ L R +V++A +V E + E ++ + T+ ++ S A
Sbjct: 84 YTPTLFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAR 143
Query: 127 FIYNEMRSSPATPISLPFRVILKGLIPYPEFREK----VKDDFLELFPDMIV 174
++ EM+ + P + + +++ L E E ++ LEL D+I
Sbjct: 144 EVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVIT 195
>gi|449436321|ref|XP_004135941.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Cucumis sativus]
gi|449514880|ref|XP_004164505.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Cucumis sativus]
Length = 477
Score = 42.7 bits (99), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 45/80 (56%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
+K++ ++R++ WY P Y +LM+L + K+ +A ++E + E + + ++
Sbjct: 111 LKIFGLLRQQQWYEPRCQTYTKLLMLLGKCKQPEQASLLFEIMFSEGLKPSIDVYTALVS 170
Query: 115 AFSDSGLPSEAMFIYNEMRS 134
A+ SGL +A+ +EM+S
Sbjct: 171 AYGQSGLLHKAISTVDEMKS 190
>gi|297852926|ref|XP_002894344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297340186|gb|EFH70603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 650
Score = 42.7 bits (99), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 58/108 (53%), Gaps = 8/108 (7%)
Query: 66 WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEA 125
++ D+F Y +L LA+++K A QV+ED+K+ D++++ +IR G EA
Sbjct: 233 GHKLDIFAYNMLLDALAKDEK---ACQVFEDMKKRHCRRDEYSYTIMIRTMGRIGKYDEA 289
Query: 126 MFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
+ ++NEM + T + + +++ L + K+ D +++F M+
Sbjct: 290 VGLFNEMITEGLTLNVVGYNTLMQVLA-----KGKMVDKAIQVFSRMV 332
Score = 35.8 bits (81), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 6/128 (4%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+F Y ++ R +V EA ++E+L+R + D ++ +I +G EA
Sbjct: 475 PDIFTYNILISSFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVR 534
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELF-----PDMIVYDPPEDLFE 183
+ EM+ P + + +++ E E F E+ P+++ Y+ D E
Sbjct: 535 FKEMQEKGLNPDVVTYSTLME-CFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLE 593
Query: 184 DQEWRRES 191
E+
Sbjct: 594 KSGRTAEA 601
>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g19440, chloroplastic-like [Cucumis sativus]
Length = 799
Score = 42.7 bits (99), Expect = 0.069, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 24 RFIKSHVSRLLKSDLVS---VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMM 80
R +K + R L D ++ ++ F + +V C +L + + K +PD++ Y +L
Sbjct: 486 RIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKR-GIQPDIYTYNFLLRG 544
Query: 81 LARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPI 140
L K+ +A ++W++ K ++ + HT+G ++ + + + ++NE+ S
Sbjct: 545 LCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELN 604
Query: 141 SLPFRVILKG 150
S+ + +I+K
Sbjct: 605 SIVYNIIIKA 614
>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Cucumis sativus]
Length = 822
Score = 42.7 bits (99), Expect = 0.069, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 24 RFIKSHVSRLLKSDLVS---VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMM 80
R +K + R L D ++ ++ F + +V C +L + + K +PD++ Y +L
Sbjct: 509 RIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKR-GIQPDIYTYNFLLRG 567
Query: 81 LARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPI 140
L K+ +A ++W++ K ++ + HT+G ++ + + + ++NE+ S
Sbjct: 568 LCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELN 627
Query: 141 SLPFRVILKG 150
S+ + +I+K
Sbjct: 628 SIVYNIIIKA 637
>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 590
Score = 42.7 bits (99), Expect = 0.070, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 63/121 (52%), Gaps = 5/121 (4%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
K+ ++PD+ Y ++ L ++ K+ +A++V+EDL + D + + +I+ F GL
Sbjct: 462 KDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLF 521
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPEDLF 182
+EA+ + ++M + P + + +I+ L F++ D +L +MI P + +
Sbjct: 522 NEALALLSKMEDNGCIPDAKTYEIIILSL-----FKKDENDMAEKLLREMIARGLPLNFY 576
Query: 183 E 183
+
Sbjct: 577 D 577
>gi|302141771|emb|CBI18974.3| unnamed protein product [Vitis vinifera]
Length = 324
Score = 42.7 bits (99), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD Y M+ M N K+ A +VW+ ++ ++ + HTF +I G S+A +
Sbjct: 200 PDADTYTMMIKMFCENDKLEMALKVWKYMRLKQFVPSMHTFSVLINGLCKKGNASKACIL 259
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
EM P S+ F + + LI E RE V +FL+ +++V +P D
Sbjct: 260 LEEMIEKGIRPSSVTFGKLKQLLI--KEGREDVL-EFLQEKMNLLVKEPLCD 308
Score = 38.9 bits (89), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 6/116 (5%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+P F Y ++ ++ +A + D++R E+ D + +I AF A
Sbjct: 95 KPTSFIYSVLVHTYGIENRIEDAVYTFLDMERNEIEADVAVYNALIGAFCKVNKLKNAYR 154
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI-VYDPPEDLF 182
+ NEM P S +IL LI + D+ +F MI V DP D +
Sbjct: 155 VLNEMDCKGIRPNSRTCNIILNSLISCGD-----TDEAFRVFRRMIKVCDPDADTY 205
>gi|330804373|ref|XP_003290170.1| hypothetical protein DICPUDRAFT_154652 [Dictyostelium purpureum]
gi|325079727|gb|EGC33314.1| hypothetical protein DICPUDRAFT_154652 [Dictyostelium purpureum]
Length = 590
Score = 42.7 bits (99), Expect = 0.074, Method: Composition-based stats.
Identities = 29/125 (23%), Positives = 56/125 (44%)
Query: 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL 97
L S+L + +++ L +L+D + +P + Y ++ ML +NK+ E ++E +
Sbjct: 445 LDSLLRVYANANRLALAKELFDTKYSQYKVKPSISSYCILITMLMKNKRFEEGLSIFEKM 504
Query: 98 KREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEF 157
K + + D + +I+ + G + EM PI + ILK YPE
Sbjct: 505 KNDGIEPDYKIYLEILHGTTKFGYAKTCLKFVKEMAQKGMPPILNDIKGILKRYEAYPEV 564
Query: 158 REKVK 162
++K
Sbjct: 565 TNEIK 569
>gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 878
Score = 42.7 bits (99), Expect = 0.074, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 24 RFIKSHVSRLLKSDLVSVLAEFQRQDQVF-LCMKLYDVVRKEIWYRPDMFFYRDMLMMLA 82
+F+ + R+ + L+SV A+ R +Q +C ++ + R D+ Y +L
Sbjct: 393 KFLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKEM-----ENAGIRKDVVTYNALLAGYG 447
Query: 83 RNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135
+ + E ++V+E++KR V + T+ +I +S GL EAM ++ E + +
Sbjct: 448 KQYRYDEVRRVFEEMKRGRVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQA 500
>gi|224081503|ref|XP_002306437.1| predicted protein [Populus trichocarpa]
gi|222855886|gb|EEE93433.1| predicted protein [Populus trichocarpa]
Length = 462
Score = 42.7 bits (99), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%)
Query: 60 VVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119
V KE +PD F Y ++ K +EA ++++ +K E V D T+ +I S
Sbjct: 253 AVLKECGLKPDAFLYNTIMKGYCLLNKGIEAVRIYKQMKEEGVEPDLVTYNTLIFGLSKC 312
Query: 120 GLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
G SEA + M S P ++ + ++ G+
Sbjct: 313 GRVSEAKKLLKIMVESGHFPDAVTYTSLMNGMC 345
>gi|255574996|ref|XP_002528404.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532192|gb|EEF33997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 955
Score = 42.7 bits (99), Expect = 0.076, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 20 VRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLM 79
V F ++ +V D SVLA ++Q+ + PD++ YRDML
Sbjct: 645 VAFSIVVRMYVKAGSLKDACSVLATMEKQENII----------------PDIYLYRDMLR 688
Query: 80 MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
+ + + + K ++ + + EV +DQ + II + + E +++EM +P
Sbjct: 689 IYQQCGMMSKLKDLYHKILKSEVDWDQELYNCIINCCARALPVGELSRLFSEMLQRGFSP 748
Query: 140 ISLPFRVIL 148
++ F V+L
Sbjct: 749 NTITFNVML 757
>gi|147767159|emb|CAN71515.1| hypothetical protein VITISV_021787 [Vitis vinifera]
Length = 655
Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
+E + PD+ Y ++L A K+V+A + ++++R+E + +F +I+A
Sbjct: 287 REAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQALCAKKKM 346
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
EAM ++ EM+S ++ + ++ G + K+ + EL +MI
Sbjct: 347 EEAMRVFFEMQSCGCPADAVTYTTLISGFCKWG----KISKGY-ELLDNMI 392
>gi|240255936|ref|NP_193372.6| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|374095491|sp|Q8GWE0.3|PP314_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g16390, chloroplastic; AltName: Full=Chloroplastic
RNA-binding protein P67; Flags: Precursor
gi|332658341|gb|AEE83741.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 702
Score = 42.7 bits (99), Expect = 0.076, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 54 CMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113
C+ +Y+ + K + +P++ Y ++ + R K+ +AK +++DL + T+ ++
Sbjct: 299 CLNIYEEM-KALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALV 357
Query: 114 RAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
RA+ + +A+ IY EM+ L VIL + + D+ E+F DM
Sbjct: 358 RAYGRARYGDDALAIYREMKEK-----GLSLTVILYNTLLSMCADNRYVDEAFEIFQDM 411
>gi|168038876|ref|XP_001771925.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676707|gb|EDQ63186.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 831
Score = 42.7 bits (99), Expect = 0.076, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+ Y + + +++A + E +K++ V + + +I ++ + P +A+
Sbjct: 648 PDIHSYTSFINACCKAGDMLKATETIEQMKQQGVQPNLQAYTTLIHGWASASYPEKALIC 707
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEF-REKVKDDFLELFPDMIVYDPPEDLFEDQEW 187
Y+EM+S+ P + I+ L+ RE V D L + +M+ D + W
Sbjct: 708 YDEMKSAGMIPDKPLYHCIMTSLLSRAAVARETVFDGVLRVTSEMVDQGICVDFATAKHW 767
Query: 188 RR 189
+R
Sbjct: 768 QR 769
>gi|356561416|ref|XP_003548977.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 456
Score = 42.7 bits (99), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
KE +P+ + Y ++ L + ++ +A+++++DL + D T+ +I G+
Sbjct: 324 KEWGIQPNKYTYTALIDGLCKGGRLKDAQKLFQDLLVKGCCIDVCTYNVMIGGLCKEGML 383
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174
EA+ I ++M + P + F +I++ L F++ D +L +MI
Sbjct: 384 DEALAIKSKMEDNGCIPNVVTFEIIIRSL-----FKKDENDKAEKLLHEMIA 430
>gi|255661150|gb|ACU25744.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
gi|255661152|gb|ACU25745.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
Length = 426
Score = 42.7 bits (99), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 6/125 (4%)
Query: 31 SRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVR------KEIWYRPDMFFYRDMLMMLARN 84
SRL +S L + VF KL+ R K PD Y +L M N
Sbjct: 68 SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVTPDTASYSTLLTMYVEN 127
Query: 85 KKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPF 144
KK +EA ++ +++ + L D T +I + G+ EA ++ MR P + +
Sbjct: 128 KKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187
Query: 145 RVILK 149
+L+
Sbjct: 188 NTLLR 192
>gi|359492357|ref|XP_002284592.2| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Vitis vinifera]
Length = 476
Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD Y M+ M N K+ A +VW+ ++ ++ + HTF +I G S+A +
Sbjct: 352 PDADTYTMMIKMFCENDKLEMALKVWKYMRLKQFVPSMHTFSVLINGLCKKGNASKACIL 411
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
EM P S+ F + + LI E RE V +FL+ +++V +P D
Sbjct: 412 LEEMIEKGIRPSSVTFGKLKQLLI--KEGREDVL-EFLQEKMNLLVKEPLCD 460
Score = 39.3 bits (90), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 58/146 (39%), Gaps = 10/146 (6%)
Query: 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL 97
+V +L + R D+ +K D +P F Y ++ ++ +A + D+
Sbjct: 221 MVDILCKAGRVDEAVGIVKEMD----SSVCKPTSFIYSVLVHTYGIENRIEDAVYTFLDM 276
Query: 98 KREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEF 157
+R E+ D + +I AF A + NEM P S +IL LI +
Sbjct: 277 ERNEIEADVAVYNALIGAFCKVNKLKNAYRVLNEMDCKGIRPNSRTCNIILNSLISCGD- 335
Query: 158 REKVKDDFLELFPDMI-VYDPPEDLF 182
D+ +F MI V DP D +
Sbjct: 336 ----TDEAFRVFRRMIKVCDPDADTY 357
>gi|297832318|ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297329881|gb|EFH60300.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 874
Score = 42.7 bits (99), Expect = 0.081, Method: Composition-based stats.
Identities = 32/148 (21%), Positives = 65/148 (43%), Gaps = 6/148 (4%)
Query: 26 IKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEI-WYRPDMFFYRDMLMMLARN 84
+ S + + S L+SV++ F + + + + VR +P ++ Y +L R
Sbjct: 66 LSSSIQKTKLSSLLSVVSIFAKSNHIDKAFPQFQFVRSRFPENKPGIYLYNVLLESCIRE 125
Query: 85 KKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPF 144
++V +++D+ + + +TF +IRA DS A +++EM P F
Sbjct: 126 RRVEFVSWLYKDMVLCGISPETYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTF 185
Query: 145 RVILKGLIPYPEFREKVKDDFLELFPDM 172
++++G + + D LEL M
Sbjct: 186 GILVRGYC-----KAGLTDKGLELLNSM 208
>gi|473874|gb|AAA17740.1| a membrane-associated salt-inducible protein [Nicotiana tabacum]
Length = 435
Score = 42.7 bits (99), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 59 DVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118
DV+R + +PD+ Y +++ + A ++ E +K+E TF II AF+
Sbjct: 21 DVIRDGL--KPDVVLYNNIIRAFCGMGNMDRALRIVEQMKKERHRPTSRTFMPIIHAFAK 78
Query: 119 SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
+G +A+ +++ MR S P + ++ GL+
Sbjct: 79 AGAIRKALDVFDMMRRSGCIPTVQTYNALILGLV 112
>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
Japonica Group]
gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
Length = 454
Score = 42.7 bits (99), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 56 KLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
K++D + K +PD+ Y +L A +VE + + + + D H F +I A
Sbjct: 133 KIFDSMVKR-GLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICA 191
Query: 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
++ E + ++++MR TP ++ +R ++ GL DD + F MI
Sbjct: 192 YTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRL-----DDAMLNFEQMI 244
>gi|218184813|gb|EEC67240.1| hypothetical protein OsI_34171 [Oryza sativa Indica Group]
Length = 458
Score = 42.7 bits (99), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++ Y ++ L + + + +A +V + + V+ D T+ I+ + SG P E +
Sbjct: 237 PNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYSSILHGYCSSGQPKEDIGT 296
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFRE--KVKDDFLE--LFPDMIVY 175
N+MRS P + +R ++ L + K+ D + L PD+ Y
Sbjct: 297 LNKMRSDGVEPNVVTYRSLMNYLCKNGRCTKARKIFDSMTKRGLEPDIATY 347
Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 56 KLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
K++D + K PD+ YR +L A +VE + + + R + D H F +I A
Sbjct: 330 KIFDSMTKR-GLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICA 388
Query: 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
++ +AM ++++MR P V+ G + + DD + F MI
Sbjct: 389 YAKQEKVDQAMLVFSKMRQHGLNP-----NVVCYGTVIDVLCKSGSVDDAMLYFEQMI 441
>gi|300681581|emb|CBI75525.1| PPR repeat domain containing protein [Triticum aestivum]
Length = 728
Score = 42.7 bits (99), Expect = 0.083, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 8/122 (6%)
Query: 53 LCMKLY-DVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGD 111
+C L+ D+V + PD + Y ++ R++++ EA +V+E + + + + T
Sbjct: 406 ICYDLWNDMVHHN--FVPDAYNYSSLIYAYCRHRQLKEALEVFELMICDGICPNVVTCTI 463
Query: 112 IIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPD 171
++ FS+ GL EA +++R P +RVI+ GL + +D +F D
Sbjct: 464 LVHGFSNEGLIGEAFLFLDKVRQFGVVPNLCTYRVIINGLC-----KVNKPNDVWGIFAD 518
Query: 172 MI 173
MI
Sbjct: 519 MI 520
>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
Length = 604
Score = 42.4 bits (98), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100
++A F + + + L++ +R + + RPD+F Y +++ L + ++ EA + +++RE
Sbjct: 238 LIALFFKFNDAHGALSLFEEMRHQ-YCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQRE 296
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
D ++I +G +AM ++ EM + P + + I+K L
Sbjct: 297 GCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKAL 347
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
+ ++D + K + PD++ Y ++ LAR + EA ++ + D +++ I+
Sbjct: 463 INMFDEMNK-LGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILN 521
Query: 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
+ +G P AM + + M+ S P + + +L L F E K
Sbjct: 522 GLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASK 569
>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 966
Score = 42.4 bits (98), Expect = 0.086, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 58/114 (50%), Gaps = 6/114 (5%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
+ PD Y ++ L + K+V +A +++++K+ V D +T+ +I +F +GL +A
Sbjct: 448 FVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQ 507
Query: 127 FIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLEL-----FPDMIVY 175
++EMRS+ +P + + +L + + + D F + +P+ I Y
Sbjct: 508 SWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQ-ANDIFHRMVGDACYPNAITY 560
>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
gi|219887141|gb|ACL53945.1| unknown [Zea mays]
Length = 522
Score = 42.4 bits (98), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Query: 57 LYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116
L D+ +K I + D+ + ++ +N K+ EA + +D+ ++V + + II A+
Sbjct: 284 LSDMQQKGI--KSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAY 341
Query: 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFL----ELFPDM 172
+SG +A + +M++S + + + ++LKGL + E + + L PD+
Sbjct: 342 IESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDV 401
Query: 173 IVYD 176
+ Y+
Sbjct: 402 VSYN 405
>gi|357123530|ref|XP_003563463.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Brachypodium distachyon]
Length = 862
Score = 42.4 bits (98), Expect = 0.087, Method: Composition-based stats.
Identities = 28/127 (22%), Positives = 62/127 (48%), Gaps = 4/127 (3%)
Query: 24 RFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLAR 83
R +++ RL D +V EF R+ ++L+ ++++ W RPD + ++ +L R
Sbjct: 86 RCLETARHRLTLQDFAAVYREFSRRGDWQRSVRLFKYMQRQSWCRPDEHIHAIVIGVLGR 145
Query: 84 NKKVVEAK--QVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPIS 141
+ K +V+ DL + +T +I A++ + L EA + ++M+++ P +
Sbjct: 146 QGPALLDKCLEVFHDLPADSRTALSYT--SLIAAYARNALHEEARALLDQMKAAGVAPTA 203
Query: 142 LPFRVIL 148
+ +L
Sbjct: 204 ATYNTVL 210
>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 680
Score = 42.4 bits (98), Expect = 0.087, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
RP+M+ Y ++ L + ++ +A+ ++EDL + +T+ +I+ F GL EA+
Sbjct: 452 RPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALS 511
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPEDLFEDQEW 187
+ ++M+ + P ++ + +I+ L F + D +L +MI E W
Sbjct: 512 LLSKMKDNSCIPDAITYEIIICSL-----FDKDENDKAEKLLREMITRGLLYSFLEYGSW 566
>gi|255593593|ref|XP_002535906.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223521567|gb|EEF26476.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 183
Score = 42.4 bits (98), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD Y +L +L + K+ EA+ + D+K + D++TF ++ + G EA +
Sbjct: 8 PDNASYNTILDVLCKKGKLNEARDLLLDMKNNGLFPDRNTFNILVSGYCKLGWLKEAAQV 67
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPE----FREKVKDDFLELFPDMIVY 175
+ M + P + +++ GL + FR + + + L+L PD++ Y
Sbjct: 68 IDVMARNNILPDVWTYNMLIGGLCKDGKIDGAFRLRDEMENLKLLPDVVTY 118
>gi|297736717|emb|CBI25753.3| unnamed protein product [Vitis vinifera]
Length = 728
Score = 42.4 bits (98), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 54 CMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113
C+ +Y+ + K + +P++ Y +L + R K+ +AK +++++ + T+ ++
Sbjct: 300 CLNVYEEM-KALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTYAALL 358
Query: 114 RAFSDSGLPSEAMFIYNEMR---SSPATPISLPFRVIL 148
RA+ + +A+ +Y EM+ S P S F ++
Sbjct: 359 RAYGRARYAEDALIVYKEMKEKGSGNCMPDSWTFSSLI 396
>gi|224131366|ref|XP_002328521.1| predicted protein [Populus trichocarpa]
gi|222838236|gb|EEE76601.1| predicted protein [Populus trichocarpa]
Length = 186
Score = 42.4 bits (98), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
+V+ + +Q+ K+ D++ + Y P + Y + + +++ EAK++ +
Sbjct: 46 AVMGGYCLNNQMDEAQKVLDIMVGK-GYAPAVHSYNILTNGNCKRRRLDEAKRLLSKMSE 104
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG 150
+E+ D T+ +++ F G P EA+ ++NEM SS P + +L G
Sbjct: 105 KELTPDTVTYSTLMQGFCQVGRPQEALNLFNEMCSSGLLPNLMTCLKLLDG 155
>gi|449480434|ref|XP_004155892.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18950-like [Cucumis sativus]
Length = 638
Score = 42.4 bits (98), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
Y PDM Y ++ + ++ +A ++W ++ + L +++++ +I F G EAM
Sbjct: 364 YAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNTLIYGFCKIGNLDEAM 423
Query: 127 FIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFP------DMIVYD 176
+Y +M S +L ++ GL + E DF P D+I Y+
Sbjct: 424 KLYKKMLDSGYKETTLSCNTLILGLCLHGRTDEAY--DFFREMPCKNIVCDVITYN 477
>gi|302763357|ref|XP_002965100.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
gi|300167333|gb|EFJ33938.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
Length = 603
Score = 42.4 bits (98), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD F Y ++ LA KV A ++ E++ + + D HT+G +++ S + + A +
Sbjct: 513 PDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLVQILCRSDVDA-AWDL 571
Query: 129 YNEMRSSPATPISLPFRVILKG 150
EM + TP F+ + KG
Sbjct: 572 LQEMMRNGHTPNEFTFKAVEKG 593
>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 546
Score = 42.4 bits (98), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 44/84 (52%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
RP++F + +L L + ++ +A++V++DL + + +T+ +I GL EA+
Sbjct: 441 RPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALT 500
Query: 128 IYNEMRSSPATPISLPFRVILKGL 151
+ ++M + P + F I+ L
Sbjct: 501 MLSKMEDNGCIPNAFTFETIIIAL 524
>gi|255661174|gb|ACU25756.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
Length = 426
Score = 42.4 bits (98), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 6/125 (4%)
Query: 31 SRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEI------WYRPDMFFYRDMLMMLARN 84
SRL +S L + VF KL+ R I PD Y +L M N
Sbjct: 68 SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPDTASYSTLLTMYVEN 127
Query: 85 KKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPF 144
KK +EA V+ +++ + L D T +I + G+ EA ++ MR P + +
Sbjct: 128 KKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 187
Query: 145 RVILK 149
+L+
Sbjct: 188 NTLLR 192
>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
Length = 855
Score = 42.4 bits (98), Expect = 0.094, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 49 DQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHT 108
D+ F +K +++RK + PD Y ++ L KV +A +++++K V D +T
Sbjct: 270 DKAFQLIK--EMMRKG--FVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYT 325
Query: 109 FGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
+ +I +F +GL +A +++ EMRS +P + + ++
Sbjct: 326 YTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALI 365
>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
Length = 769
Score = 42.4 bits (98), Expect = 0.094, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 49 DQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHT 108
D+ F +K +++RK + PD Y ++ L KV +A +++++K V D +T
Sbjct: 439 DKAFQLIK--EMMRKG--FVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYT 494
Query: 109 FGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
+ +I +F +GL +A +++ EMRS +P + + ++
Sbjct: 495 YTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALI 534
>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
Length = 801
Score = 42.4 bits (98), Expect = 0.094, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 49 DQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHT 108
D+ F +K +++RK + PD Y ++ L KV +A +++++K V D +T
Sbjct: 270 DKAFQLIK--EMMRKG--FVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYT 325
Query: 109 FGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
+ +I +F +GL +A +++ EMRS +P + + ++
Sbjct: 326 YTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALI 365
>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
Length = 736
Score = 42.4 bits (98), Expect = 0.094, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 49 DQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHT 108
D+ F +K +++RK + PD Y ++ L KV +A +++++K V D +T
Sbjct: 205 DKAFQLIK--EMMRKG--FVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYT 260
Query: 109 FGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
+ +I +F +GL +A +++ EMRS +P + + ++
Sbjct: 261 YTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALI 300
>gi|449433055|ref|XP_004134313.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18950-like [Cucumis sativus]
Length = 602
Score = 42.4 bits (98), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
K+ Y PDM Y ++ + ++ +A ++W ++ + L +++++ +I F G
Sbjct: 324 KDRGYAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNTLIYGFCKIGNL 383
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFP------DMIVYD 176
EAM +Y +M S +L ++ GL + E DF P D+I Y+
Sbjct: 384 DEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGRTDEAY--DFFREMPCKNIVCDVITYN 441
>gi|326513138|dbj|BAK06809.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 637
Score = 42.4 bits (98), Expect = 0.095, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100
+L R +V ++Y+ +R++ Y D+F Y +L LA++ V +A QV+ED+K++
Sbjct: 192 ILQAHLRSREVSKGFEVYEEMRRK-GYMLDIFGYNMLLDALAKSGMVDQAYQVFEDMKQK 250
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS 134
D +T+ +IR +G S+ + ++EM S
Sbjct: 251 YCEPDAYTYTILIRMSGRAGKASKFLSFFDEMVS 284
Score = 37.7 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 20/106 (18%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
R + + Y+ +L R+++V + +V+E+++R+ + D + ++ A + SG+ +A
Sbjct: 183 RLNGYTYKCILQAHLRSREVSKGFEVYEEMRRKGYMLDIFGYNMLLDALAKSGMVDQAYQ 242
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
++ +M+ P + + ++++ R FL F +M+
Sbjct: 243 VFEDMKQKYCEPDAYTYTILIR-----MSGRAGKASKFLSFFDEMV 283
>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 915
Score = 42.4 bits (98), Expect = 0.095, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 49/91 (53%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD + Y M+ L ++K+V EA +++ L++++V+ + + +I + +G +EA +
Sbjct: 495 PDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLM 554
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
+M S P SL F ++ GL + +E
Sbjct: 555 LEKMLSKNCLPNSLTFNALIHGLCTDGKLKE 585
>gi|359486048|ref|XP_002270184.2| PREDICTED: pentatricopeptide repeat-containing protein At1g10910,
chloroplastic [Vitis vinifera]
gi|298204537|emb|CBI23812.3| unnamed protein product [Vitis vinifera]
Length = 659
Score = 42.4 bits (98), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 40/62 (64%)
Query: 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123
++ Y D Y ++ LA++++++EAK ++E++K+++V D + + +I AF SGL
Sbjct: 339 DLGYAEDEMPYCLLMDGLAKSRRILEAKSIFEEMKKKQVKSDGYCYSIMISAFCRSGLLK 398
Query: 124 EA 125
EA
Sbjct: 399 EA 400
>gi|168004269|ref|XP_001754834.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693938|gb|EDQ80288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 504
Score = 42.4 bits (98), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 42/77 (54%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
+ + + PD++ Y +L +R + AK+V++ + V DQ ++ +I AF +GL
Sbjct: 259 QSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAFGRAGLT 318
Query: 123 SEAMFIYNEMRSSPATP 139
++A +Y+ M+ + P
Sbjct: 319 ADAQAVYDSMKEAGFKP 335
>gi|115482710|ref|NP_001064948.1| Os10g0495100 [Oryza sativa Japonica Group]
gi|22128714|gb|AAM92826.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
Group]
gi|31432837|gb|AAP54424.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639557|dbj|BAF26862.1| Os10g0495100 [Oryza sativa Japonica Group]
gi|125575261|gb|EAZ16545.1| hypothetical protein OsJ_32018 [Oryza sativa Japonica Group]
Length = 461
Score = 42.4 bits (98), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 5/126 (3%)
Query: 56 KLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
K+++ + K +PD+ Y +L A +VE + + + + + H F +I A
Sbjct: 318 KIFNSMTK-CGLKPDITTYCTLLQGYATKGALVEMHDLLDLMVWNGIQPNHHVFNILICA 376
Query: 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKV---KDDFLE-LFPD 171
++ EAM ++++MR +P ++ +R ++ L + V K E L PD
Sbjct: 377 YAKQEKVDEAMLVFSKMRQQGLSPNAVNYRTVIDVLCKLGRVYDAVLTLKQMINEGLTPD 436
Query: 172 MIVYDP 177
+IVY P
Sbjct: 437 IIVYTP 442
>gi|224076898|ref|XP_002305039.1| predicted protein [Populus trichocarpa]
gi|222848003|gb|EEE85550.1| predicted protein [Populus trichocarpa]
Length = 800
Score = 42.4 bits (98), Expect = 0.099, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 47/82 (57%)
Query: 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIY 129
D+ Y ++ K+V+A +V+E+++ + + D TF ++ AFS GL +EA+ +Y
Sbjct: 443 DIMHYTTLINGYCHVGKLVDAFRVFEEMEGKGLEPDVVTFNILLAAFSRRGLANEALKLY 502
Query: 130 NEMRSSPATPISLPFRVILKGL 151
M+S P ++ V+++GL
Sbjct: 503 EYMKSQDLKPNAITHNVMIEGL 524
Score = 38.5 bits (88), Expect = 1.4, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 58/130 (44%), Gaps = 17/130 (13%)
Query: 22 FDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMML 81
+D +KS+V+ + + ++ L + +R+ + P +F + ++ L
Sbjct: 167 YDALVKSYVTAGMLDEAINALFQIKRRG-----------------FLPHIFTFNYLMNKL 209
Query: 82 ARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPIS 141
N KV A +++ LK + + +T+ II+AF G EA ++ EM P +
Sbjct: 210 IANGKVDAALAIYKQLKSLGLNPNDYTYSIIIKAFCRKGSLVEASNVFQEMELCGVIPNA 269
Query: 142 LPFRVILKGL 151
+ ++GL
Sbjct: 270 YAYTTYIEGL 279
Score = 36.2 bits (82), Expect = 7.8, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 38/65 (58%)
Query: 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIY 129
D++ Y ++ K+ A+ V D++++E++ D + ++IR + +G S+A+ ++
Sbjct: 303 DVYAYVAVIRGFCNEMKMDRAEVVLGDMEKQELISDARCYSELIRGYCKAGDLSKALALH 362
Query: 130 NEMRS 134
N+M S
Sbjct: 363 NDMES 367
>gi|356512321|ref|XP_003524868.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37230-like [Glycine max]
Length = 733
Score = 42.4 bits (98), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 57/114 (50%), Gaps = 5/114 (4%)
Query: 51 VFLCMKLYDVVR-----KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFD 105
+FL ++L VR K PD+ Y ++ R KKV EA++++ ++K +++ +
Sbjct: 237 MFLSLRLDTAVRFYEDMKSRGILPDVVTYNTLINGYFRFKKVDEAEKLFVEMKGRDIVPN 296
Query: 106 QHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
+F +++ + +G +A+ ++ EM+ P + F +L GL + E
Sbjct: 297 VISFTTMLKGYVAAGRIDDALKVFEEMKGCGVKPNVVTFSTLLPGLCDAEKMAE 350
>gi|295830921|gb|ADG39129.1| AT5G21222-like protein [Neslia paniculata]
Length = 166
Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
++P + Y ++ L R K + +++ + D F II A S+SG +AM
Sbjct: 6 HKPSIITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAM 65
Query: 127 FIYNEMRSSPATPISLPFRVILKG 150
I+ +M+ S P + F ++KG
Sbjct: 66 KIFEQMKESGCKPTTSTFNTLIKG 89
>gi|297797091|ref|XP_002866430.1| hypothetical protein ARALYDRAFT_496296 [Arabidopsis lyrata subsp.
lyrata]
gi|297312265|gb|EFH42689.1| hypothetical protein ARALYDRAFT_496296 [Arabidopsis lyrata subsp.
lyrata]
Length = 489
Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD-------SGLP 122
++ YR +L + + V EA++V +D+K + D F ++ + SGL
Sbjct: 209 ELSVYRSLLFGWSVQRNVKEARRVIQDMKSAGITPDLFCFNSLLTCLCERNVNRNPSGLV 268
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
EA+ I EMRS P S+ + ++L L RE +
Sbjct: 269 PEALNIMLEMRSYKIQPTSISYNILLSCLGRTRRVRESCQ 308
>gi|218197756|gb|EEC80183.1| hypothetical protein OsI_22045 [Oryza sativa Indica Group]
Length = 577
Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%)
Query: 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123
E ++PD Y +L A+ V ++V E+L + D T+ +I + G
Sbjct: 129 EKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLD 188
Query: 124 EAMFIYNEMRSSPATPISLPFRVILKGL 151
A+ +Y+EMR+ TP ++ + V++ L
Sbjct: 189 LALGLYDEMRAIGCTPDAVTYTVLVDSL 216
>gi|410110067|gb|AFV61113.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
herrerae]
Length = 433
Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 6/125 (4%)
Query: 31 SRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVR------KEIWYRPDMFFYRDMLMMLARN 84
SRL +S + L + VF KL+ R K P+ Y +L M N
Sbjct: 71 SRLKRSGFMPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASYSTLLTMYVEN 130
Query: 85 KKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPF 144
KK +EA V+ +++ + L D T +I + G+ EA ++ MR P + +
Sbjct: 131 KKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSY 190
Query: 145 RVILK 149
+L+
Sbjct: 191 NTLLR 195
>gi|297737146|emb|CBI26347.3| unnamed protein product [Vitis vinifera]
Length = 862
Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/105 (20%), Positives = 51/105 (48%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
+++++ ++K+ Y ++ Y ML +L + +K + +W+++ + T+G +I
Sbjct: 180 LEIFEWLKKKGCYELNVIHYNIMLRILGKARKWHHVESLWDEMMSRGITPVNSTYGTLID 239
Query: 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
+S GL EA+ + M P + V+++ EF++
Sbjct: 240 VYSKGGLTEEALHWLDRMNKQGMEPDEVTMGVVVQTYKKAGEFKK 284
>gi|449445824|ref|XP_004140672.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36240-like [Cucumis sativus]
gi|449487417|ref|XP_004157616.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36240-like [Cucumis sativus]
Length = 486
Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 58 YDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117
+D +RK I RP + Y ++ ++ + +A + + + V D +TF +I +
Sbjct: 171 FDSMRKLIDGRPSVVVYNILINGFVKSGRFDKALGFYSRMLSDRVKPDVYTFNILISGYC 230
Query: 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
+ +A+ ++ EMR +P + F ++KG FRE+ +D + L +MI
Sbjct: 231 RNSQFVQALELFKEMREKGCSPNVISFNTLIKGF-----FRERKFEDGIALAYEMI 281
>gi|55295905|dbj|BAD67773.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
Length = 1013
Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 70/142 (49%), Gaps = 6/142 (4%)
Query: 11 ELKRLQSHPVRFDRFIKSHVSRLLKS--DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYR 68
E +L S +DR I S + R +++ ++SV + + ++ ++++ +E+
Sbjct: 728 ESGKLYSAVSIYDRMISSGIPRSMQTFNIMISVYGQGGKLEKA---VEMFSAA-QELGLP 783
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
D Y +ML + K EA ++ +K + + + +F +I A++ SGL +EA I
Sbjct: 784 IDEKTYTNMLSFYGKAGKHHEASLLFSRMKEDGIRPGKISFNTMINAYATSGLHNEAEII 843
Query: 129 YNEMRSSPATPISLPFRVILKG 150
+ EM+ + P S + +++
Sbjct: 844 FQEMQKNNHVPDSHTYLALIRA 865
>gi|359477372|ref|XP_002280003.2| PREDICTED: pentatricopeptide repeat-containing protein At3g23020
[Vitis vinifera]
Length = 881
Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/105 (20%), Positives = 51/105 (48%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
+++++ ++K+ Y ++ Y ML +L + +K + +W+++ + T+G +I
Sbjct: 180 LEIFEWLKKKGCYELNVIHYNIMLRILGKARKWHHVESLWDEMMSRGITPVNSTYGTLID 239
Query: 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
+S GL EA+ + M P + V+++ EF++
Sbjct: 240 VYSKGGLTEEALHWLDRMNKQGMEPDEVTMGVVVQTYKKAGEFKK 284
>gi|297844992|ref|XP_002890377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336219|gb|EFH66636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 537
Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
+ PD+ Y +++ R ++ EA++V++D+K + + +T+ +I A G S A
Sbjct: 251 FEPDVIVYTNLVRGWCRAGEISEAEKVFKDMKLAGIEPNVYTYSIVIDALCRCGQISRAH 310
Query: 127 FIYNEMRSSPATPISLPF----RVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176
++ +M S P ++ F RV +K P + + L PD I Y+
Sbjct: 311 DVFADMLDSGCAPNAITFNNLMRVHVKAGRPEKVLQVYNQMKKLGCEPDTITYN 364
Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Query: 43 AEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEV 102
E ++VF MKL + P+++ Y ++ L R ++ A V+ D+
Sbjct: 269 GEISEAEKVFKDMKLAGI-------EPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGC 321
Query: 103 LFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILK 149
+ TF +++R +G P + + +YN+M+ P ++ + +++
Sbjct: 322 APNAITFNNLMRVHVKAGRPEKVLQVYNQMKKLGCEPDTITYNFLIE 368
Score = 37.0 bits (84), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
Query: 74 YRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133
Y +M+ + + ++ A + + +K V TF +IR + +GL SEA+ +N M
Sbjct: 154 YNEMIDLAGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRME 213
Query: 134 SSPATPISLPFRVILKGL------IPYPEFREKVKDDFLELFPDMIVY 175
P + F +++ L F + +KD F PD+IVY
Sbjct: 214 DYGCVPDQIAFSIVISNLSRKRRASEAQSFFDSLKDRFE---PDVIVY 258
>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 42.4 bits (98), Expect = 0.10, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Query: 48 QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQH 107
Q Q+ KL+D++ + + P + Y ++ +++++ EAK + ++ ++ D
Sbjct: 329 QSQMDEAQKLFDIMVGK-GFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTV 387
Query: 108 TFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
T+ +++ F +G P A ++ EM S P S+ + ++L GL + E +
Sbjct: 388 TYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFR 442
>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 546
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 44/84 (52%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
RP++F + +L L + ++ +A++V++DL + + +T+ +I GL EA+
Sbjct: 441 RPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALT 500
Query: 128 IYNEMRSSPATPISLPFRVILKGL 151
+ ++M + P + F I+ L
Sbjct: 501 MLSKMEDNGCIPNAFTFETIIIAL 524
>gi|125557435|gb|EAZ02971.1| hypothetical protein OsI_25111 [Oryza sativa Indica Group]
Length = 728
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL 97
+V LA D++ +++ +R E+ RPD+F Y ++ + R + +VWE++
Sbjct: 272 MVRALARAGMTDKL---LEMIGRMRAEVC-RPDVFVYTALVKTMVRWGHMEGCIRVWEEM 327
Query: 98 KREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133
+R+ V D + +I ++G+ +A ++ EMR
Sbjct: 328 RRDHVDPDTMAYTTMIAGLCNAGMVEKAEELFGEMR 363
>gi|357512639|ref|XP_003626608.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240852|gb|ABD32710.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355501623|gb|AES82826.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 451
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 41 VLAEFQRQDQVFLCMKLY-DVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
++ R+ QV + L+ D++ K + PD F Y +L L R KK+ EA ++ +K
Sbjct: 223 LMQALCRKSQVNGAVDLFEDMLNK--GFVPDSFTYTTLLNSLCRKKKLREAYKLLCRMKV 280
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
+ D + +I F G +A + ++M+++ P + +R ++ GL E
Sbjct: 281 KGCNPDIVHYNTVILGFCREGRAHDACKVIDDMQANGCLPNLVSYRTLVNGLCHLGMLDE 340
Query: 160 KVK 162
K
Sbjct: 341 ATK 343
>gi|356529499|ref|XP_003533328.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 447
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 46/89 (51%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
K+ RP+MF + +L L + ++ +A++V++DL + + +T+ +I GL
Sbjct: 337 KDQGIRPNMFTFTILLDGLWKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLL 396
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGL 151
EA+ + ++M + P + F I+ L
Sbjct: 397 EEALTMLSKMEDNGCIPNAFTFETIIIAL 425
>gi|303289811|ref|XP_003064193.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454509|gb|EEH51815.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 401
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 8/124 (6%)
Query: 42 LAEFQRQDQVFLCMKLYDVVRKEI--WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
+A + R ++ L K D R + +P ++ Y ++ LAR+ ++ EA+ W D+ R
Sbjct: 75 VAAYARCGEIALAEKALDAGRADARAGNKPTVYAYTALVQALARSGRMDEARG-WLDVMR 133
Query: 100 EE-VLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILK----GLIPY 154
+ V + HT+ I+ +G + A EM+++ P ++ + +LK G+ P
Sbjct: 134 ADGVAPNAHTYSTIVDGLVRAGDAAAAESALREMKANGVEPTAVTYNTLLKSCVAGVTPA 193
Query: 155 PEFR 158
R
Sbjct: 194 DALR 197
>gi|218197431|gb|EEC79858.1| hypothetical protein OsI_21342 [Oryza sativa Indica Group]
Length = 1013
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 70/142 (49%), Gaps = 6/142 (4%)
Query: 11 ELKRLQSHPVRFDRFIKSHVSRLLKS--DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYR 68
E +L S +DR I S + R +++ ++SV + + ++ ++++ +E+
Sbjct: 728 ESGKLYSAVSIYDRMISSGIPRSMQTFNIMISVYGQGGKLEKA---VEMFSAA-QELGLP 783
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
D Y +ML + K EA ++ +K + + + +F +I A++ SGL +EA I
Sbjct: 784 IDEKTYTNMLSFYGKAGKHHEASLLFSRMKEDGIRPGKISFNTMINAYATSGLHNEAEII 843
Query: 129 YNEMRSSPATPISLPFRVILKG 150
+ EM+ + P S + +++
Sbjct: 844 FQEMQKNNHVPDSHTYLALIRA 865
>gi|297834586|ref|XP_002885175.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331015|gb|EFH61434.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 653
Score = 42.0 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
KE P+++ Y ++ + KKV +A+++ + + R + D T+ +I+A S+SG
Sbjct: 551 KESGLSPNLYAYNAIIQSFCKMKKVKKAEELLKTMLRIGLKPDNFTYSTLIKALSESGRE 610
Query: 123 SEAMFIYNEMRSSPATPISLPFRVI 147
SEA +++ M P S R++
Sbjct: 611 SEAREMFSSMERHGCVPDSYTKRLV 635
>gi|297832386|ref|XP_002884075.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329915|gb|EFH60334.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 462
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 12/126 (9%)
Query: 34 LKSDLVS-------VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKK 86
+K DLVS V ++ ++L KL + ++PD F Y ++ K
Sbjct: 225 VKPDLVSFTILIDNVCNSKNLREAMYLVSKLGNA-----GFKPDCFLYNTIMKGFCTLSK 279
Query: 87 VVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRV 146
EA V++ +K E V DQ T+ +I S SG EA M + P + +
Sbjct: 280 GSEAIGVYKKMKEEGVEPDQITYNTLIYGLSKSGRVEEARMYLKTMVDAGYEPDTATYTS 339
Query: 147 ILKGLI 152
++ G+
Sbjct: 340 LMNGMC 345
>gi|255661198|gb|ACU25768.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
Length = 426
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 6/125 (4%)
Query: 31 SRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEI------WYRPDMFFYRDMLMMLARN 84
SRL +S ++ L + VF KL+ R I PD Y +L M N
Sbjct: 68 SRLKRSGIMPDLVVYNSMINVFGKAKLFREARSLISEMRTAGVMPDTVSYTALLTMYVEN 127
Query: 85 KKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPF 144
KK +EA V+ +++ + L D T +I + G+ EA ++ MR P + +
Sbjct: 128 KKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLGIEPNVVSY 187
Query: 145 RVILK 149
+L+
Sbjct: 188 NTLLR 192
>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic; AltName: Full=Protein PROTON GRADIENT
REGULATION 3; Flags: Precursor
gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
Length = 1112
Score = 42.0 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD++ Y +++ L V EA +++ +++R + + TF +IR +S SG P A +
Sbjct: 1030 PDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAV 1089
Query: 129 YNEMRSSPATP 139
Y M + +P
Sbjct: 1090 YQTMVTGGFSP 1100
Score = 40.4 bits (93), Expect = 0.34, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
++PD Y +L + N+ + KQ W +++++ + D TF ++ A +G EA
Sbjct: 324 HKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAF 383
Query: 127 FIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
+ MR P + ++ GL+ R DD LELF +M
Sbjct: 384 DTLDVMRDQGILPNLHTYNTLICGLL-----RVHRLDDALELFGNM 424
Score = 37.0 bits (84), Expect = 4.4, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 68/151 (45%), Gaps = 5/151 (3%)
Query: 23 DRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLA 82
+R + + + R S LV ++ + + V L++ K++ +P + Y ++ L
Sbjct: 737 ERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLL 796
Query: 83 RNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISL 142
+ A+ V+ +K + D T+ ++ A+ SG E +Y EM + ++
Sbjct: 797 EADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTI 856
Query: 143 PFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
+++ GL+ + DD L+L+ D++
Sbjct: 857 THNIVISGLV-----KAGNVDDALDLYYDLM 882
>gi|115470867|ref|NP_001059032.1| Os07g0179000 [Oryza sativa Japonica Group]
gi|34393469|dbj|BAC83029.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|50509181|dbj|BAD30332.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113610568|dbj|BAF20946.1| Os07g0179000 [Oryza sativa Japonica Group]
gi|125599319|gb|EAZ38895.1| hypothetical protein OsJ_23314 [Oryza sativa Japonica Group]
gi|215712269|dbj|BAG94396.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767408|dbj|BAG99636.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 727
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL 97
+V LA D++ +++ +R E+ RPD+F Y ++ + R + +VWE++
Sbjct: 271 MVRALARAGMTDKL---LEMIGRMRAEVC-RPDVFVYTALVKTMVRWGHMEGCIRVWEEI 326
Query: 98 KREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133
+R+ V D + +I ++G+ +A ++ EMR
Sbjct: 327 RRDHVDPDTMAYTTMIAGLCNAGMVEKAEELFGEMR 362
>gi|226500056|ref|NP_001147821.1| pentatricopeptide repeat 2 [Zea mays]
gi|195613946|gb|ACG28803.1| PPR2 [Zea mays]
Length = 562
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
++++++++++ +Y P Y ++++L R+ + A Q+++++ ++ + +I
Sbjct: 192 LQVFEMLKEQPFYHPKEGTYMKLIVLLGRSGQPTRAHQLFDEMLQQGCQPTPELYTALIG 251
Query: 115 AFSDSGLPSEAMFIYNEMRSSP-ATPISLPFRVILKGLI 152
A+ S L EA+ + N+M+SSP P + I+K +
Sbjct: 252 AYCRSCLLDEALQLLNDMKSSPLCQPDVYTYSTIIKACV 290
>gi|356552149|ref|XP_003544432.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Glycine max]
Length = 481
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 44/80 (55%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
++++ ++RK+ WY+P Y +LMML + ++ EA ++E + E + + ++
Sbjct: 108 LEIFALLRKQYWYQPRCRTYAKLLMMLGKCRQPEEASLLFEIMLSEGLKPTVDVYTALVS 167
Query: 115 AFSDSGLPSEAMFIYNEMRS 134
A+ SGL +A +M+S
Sbjct: 168 AYGQSGLLDQAFSTVEDMKS 187
>gi|15239614|ref|NP_197396.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635758|sp|Q8GYM2.2|PP393_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g18950
gi|332005249|gb|AED92632.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 483
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P M+ Y+ ++ L NKK +EA ++++LK + D+ + +IR F + G A +
Sbjct: 281 PSMYIYQKIIKGLCMNKKQLEAYCIFKNLKDKGYAPDRVVYTTMIRGFCEKGWLGSARKL 340
Query: 129 YNEMRSSPATPISLPFRVILKG 150
+ EM P + V++ G
Sbjct: 341 WFEMIKKGMRPNEFAYNVMIHG 362
>gi|297599210|ref|NP_001046823.2| Os02g0468500 [Oryza sativa Japonica Group]
gi|47497324|dbj|BAD19365.1| fertility restorer homologue A-like [Oryza sativa Japonica Group]
gi|125582052|gb|EAZ22983.1| hypothetical protein OsJ_06677 [Oryza sativa Japonica Group]
gi|255670892|dbj|BAF08737.2| Os02g0468500 [Oryza sativa Japonica Group]
Length = 506
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 21/166 (12%)
Query: 16 QSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYR 75
Q + ++ IK +V K DL + F + M DV RP + Y
Sbjct: 189 QPNTCIYNILIKHYVK---KGDLGTAFQVFDEMRK----MNCADV-------RPSLVTYS 234
Query: 76 DMLMMLARNKKVVEAKQVWED-LKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS 134
++ L R ++ EA +++ED ++++ ++ DQ T+ +I F G +A I+ MR
Sbjct: 235 TLIGGLCRGAQMKEAFELFEDMIEKDRIVPDQLTYNLLIGGFCRLGQVEKAQSIFGFMRK 294
Query: 135 SPATPISLPFRVILKGLIPYPEFREKVKDDFLELF-----PDMIVY 175
+ P + + ++ G E E + F E+ PD + Y
Sbjct: 295 NECEPNAFNYATLINGHCKKGEV-EAARGVFEEMIRSGVQPDAVSY 339
>gi|302798857|ref|XP_002981188.1| hypothetical protein SELMODRAFT_420654 [Selaginella moellendorffii]
gi|300151242|gb|EFJ17889.1| hypothetical protein SELMODRAFT_420654 [Selaginella moellendorffii]
Length = 796
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 22/165 (13%)
Query: 8 VAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWY 67
V +EL+ L P F H++ +LK+ Q D + + +R++ WY
Sbjct: 89 VERELQLLDIRPSEF------HINEVLKN--------IQEPD---VANGFFQWIRRQKWY 131
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
P + + +L R K ++V DLK ++ + +I+ + + EA
Sbjct: 132 VPSTYSFSILLNTYGRGKDFQAVQRVLSDLKADKCPMTTVAYNTLIKVYGKAHKLDEAWG 191
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
Y EM+ S P F ++ L Y EKV LE++ +M
Sbjct: 192 YYKEMQDSRCVPDIFTFNTLMS-LYSYAGQSEKV----LEVYDEM 231
>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
Length = 333
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 59/128 (46%), Gaps = 9/128 (7%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
++L+D + + RPD+ Y ++ + R + +A +W+D+ E+ + T+ +I
Sbjct: 106 LQLFDTMLNQ-RLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILID 164
Query: 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLE------L 168
+ + G +A +EM + P + + I+KG + K FL+ +
Sbjct: 165 SHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQK--FLQKMMVNKV 222
Query: 169 FPDMIVYD 176
PD+I Y+
Sbjct: 223 SPDLITYN 230
>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
Length = 814
Score = 42.0 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Query: 30 VSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVE 89
+ R+ + L+S ++ D+ F M L ++V++ + +PD + Y ++ L KV E
Sbjct: 527 MDRVSYNTLISGCCGKKKLDEAF--MFLDEMVKRGL--KPDNYTYSILICGLFNMNKVEE 582
Query: 90 AKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILK 149
A Q W+D KR +L D +T+ +I + E ++EM S P ++ + +++
Sbjct: 583 AIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIR 642
Query: 150 G 150
Sbjct: 643 A 643
>gi|115466932|ref|NP_001057065.1| Os06g0199100 [Oryza sativa Japonica Group]
gi|51091829|dbj|BAD36643.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113595105|dbj|BAF18979.1| Os06g0199100 [Oryza sativa Japonica Group]
Length = 1283
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%)
Query: 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123
E ++PD Y +L A+ V ++V E+L + D T+ +I + G
Sbjct: 196 EKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLD 255
Query: 124 EAMFIYNEMRSSPATPISLPFRVILKGL 151
A+ +Y+EMR+ TP ++ + V++ L
Sbjct: 256 LALGLYDEMRAIGCTPDAVTYTVLVDSL 283
Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 32 RLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKK 86
++ KS ++ +L F + VF MK+Y+ + K Y P+M YR M+ +L NK+
Sbjct: 689 KISKSTVLLMLEAFAKAGDVFEVMKIYNGM-KAAGYLPNMHLYRIMISLLCHNKR 742
>gi|413926076|gb|AFW66008.1| hypothetical protein ZEAMMB73_411794 [Zea mays]
Length = 633
Score = 42.0 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 32/130 (24%), Positives = 66/130 (50%), Gaps = 6/130 (4%)
Query: 47 RQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ 106
R +V+ ++Y+ +R++ Y+ D+F Y +L LA+ V +A QV+ED+K+ D
Sbjct: 195 RSREVWKGFEVYEKMRRK-GYKLDIFAYNMLLNALAKAGMVDQAYQVFEDMKQNYCDPDA 253
Query: 107 HTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFL 166
+T+ +IR +G ++ + + EM S + + +++ L + K+ D+ +
Sbjct: 254 YTYTILIRMSGKAGKTTKFVSLLEEMVSEGCVLNLIAYNTVIEAL-----GKNKMVDEAI 308
Query: 167 ELFPDMIVYD 176
+ MI D
Sbjct: 309 FMLSKMIESD 318
Score = 35.8 bits (81), Expect = 10.0, Method: Composition-based stats.
Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100
+ + + QV LYD +R PD+F Y M+ R V +A +++E+++
Sbjct: 431 IFSALGKLKQVSFMSSLYDTMRAN-GVVPDVFTYNIMISSFGRVGLVDKASELFEEMEDG 489
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILK 149
D T+ +I +G EA ++ +M+ P + ++++
Sbjct: 490 SCKPDVVTYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYSILIE 538
>gi|359473218|ref|XP_003631269.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g61370, mitochondrial-like [Vitis vinifera]
Length = 505
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 73 FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD-------SGLPSEA 125
YR + + K V EA+++ +++K ++ D + +R + SGL EA
Sbjct: 213 IYRSLFYGWSEQKNVKEARRILKEMKSVGIMPDLFCYNTFLRCLCERNLKSNPSGLVPEA 272
Query: 126 MFIYNEMRSSPATPISLPFRVILKGL 151
+ + EMRS+ TP S+ + ++L L
Sbjct: 273 LNVMMEMRSNRITPTSISYNILLSCL 298
>gi|401398381|ref|XP_003880292.1| pentatricopeptide repeat-containing protein At5g55840, related
[Neospora caninum Liverpool]
gi|325114702|emb|CBZ50258.1| pentatricopeptide repeat-containing protein At5g55840, related
[Neospora caninum Liverpool]
Length = 1844
Score = 42.0 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 50 QVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE-EVLFDQHT 108
+V C ++ ++ +P+ Y M L N +VVEA +++E++KRE +VL +
Sbjct: 970 KVKACWTVWSKLKNSRGLQPNAVAYGCMYDALVSNGRVVEALELFEEMKREGQVLPNTIM 1029
Query: 109 FGDIIRAFSDSGLPSEAMFIYNEMRSS 135
+ II+ F+ S +A+ +Y EM+ +
Sbjct: 1030 YSTIIKGFAQSKQLDKALKMYAEMQQN 1056
Score = 40.0 bits (92), Expect = 0.49, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 57/112 (50%)
Query: 50 QVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTF 109
+V ++L++ +++E P+ Y ++ A++K++ +A +++ ++++ V + TF
Sbjct: 1006 RVVEALELFEEMKREGQVLPNTIMYSTIIKGFAQSKQLDKALKMYAEMQQNGVAINIVTF 1065
Query: 110 GDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKV 161
I+ A + G +A + +M S P + F I+KG + E + +
Sbjct: 1066 NSIVDACARVGAMDKAAMLLEDMLSQGIKPDLITFSTIIKGYCVHGEMNKAL 1117
>gi|255568998|ref|XP_002525469.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535282|gb|EEF36959.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 581
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 62/136 (45%), Gaps = 4/136 (2%)
Query: 19 PVRFDRFIKSHVSRLLKSDLVS---VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYR 75
P DR + R + D+VS +++ + + ++ KLY+ + KE+ PD Y
Sbjct: 285 PREADRIWREMCKRRIHYDVVSYASIISCYSKAGNLYKVFKLYNQM-KEVGIEPDRKIYN 343
Query: 76 DMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135
++ LA+ + V EA + + ++ + + + T+ +I+ + EA +++EM
Sbjct: 344 SVIFALAKGRHVSEAINLMKTMEEKGIAPNTVTYNSLIKPLCRARKIDEARGLFDEMLQH 403
Query: 136 PATPISLPFRVILKGL 151
+P + + L
Sbjct: 404 GHSPTIRTYHAFFRSL 419
>gi|302801478|ref|XP_002982495.1| hypothetical protein SELMODRAFT_116601 [Selaginella moellendorffii]
gi|300149594|gb|EFJ16248.1| hypothetical protein SELMODRAFT_116601 [Selaginella moellendorffii]
Length = 448
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 11/124 (8%)
Query: 36 SDLVSVLAEFQRQDQVFLCMKLYDV-VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVW 94
+ L+SVL + R D MK++D+ V KEI P++ Y +L R +K+ A +++
Sbjct: 153 TALISVLCKHNRADDA---MKVFDIMVEKEIV--PNLDVYTSLLAAHCRTRKLDGAYRLF 207
Query: 95 EDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP-----ISLPFRVILK 149
++ + T+G ++R + G A I++ MRS P SL + +
Sbjct: 208 VEMIQRGYGPSASTYGLLLRCLCNGGRSYLAYDIHSSMRSRGHVPDENTYASLIYGCCMA 267
Query: 150 GLIP 153
G I
Sbjct: 268 GRIT 271
>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 825
Score = 42.0 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Query: 30 VSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVE 89
+ R+ + L+S ++ D+ F M L ++V++ + +PD + Y ++ L KV E
Sbjct: 538 MDRVSYNTLISGCCGKKKLDEAF--MFLDEMVKRGL--KPDNYTYSILICGLFNMNKVEE 593
Query: 90 AKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILK 149
A Q W+D KR +L D +T+ +I + E ++EM S P ++ + +++
Sbjct: 594 AIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIR 653
Query: 150 G 150
Sbjct: 654 A 654
>gi|297807403|ref|XP_002871585.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317422|gb|EFH47844.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 609
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 61/115 (53%), Gaps = 8/115 (6%)
Query: 22 FDRFIKSHVSRLL--KSDLVSVLAEFQR-QDQVFLCMKLYDVVRKEIWYRPDMFFYRDML 78
FD +K + + S+++ + + QR D V L K+ K+ +P+++ Y ++
Sbjct: 411 FDEMVKKGFDKCVVAYSNIMDMYGKTQRLSDAVKLMAKM-----KQRGCKPNIWIYNSLI 465
Query: 79 MMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133
M R K + A+++W+++KR +VL D+ ++ +I A++ + + +Y E R
Sbjct: 466 DMHGRAKDLRRAEKIWKEMKRAKVLPDKVSYTSMISAYNRAKELERCVELYQEFR 520
>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 677
Score = 42.0 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD Y +L+ RN +EAK ++ D+ V D +F +I S +G +A+
Sbjct: 288 PDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMY 347
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFRE--KVKDDFLE 167
+ +M++S P ++ + +++ G E +++D LE
Sbjct: 348 FRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLE 388
Score = 36.2 bits (82), Expect = 6.7, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+ + ++ + +RN + +A + D+K ++ D + +I + +G+ SEA+ I
Sbjct: 323 PDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEI 382
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
++M + + IL GL ++K+ D LF +M+
Sbjct: 383 RDKMLEQGCALDVVAYNTILNGLC-----KKKLLADANALFDEMV 422
>gi|356564752|ref|XP_003550612.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Glycine max]
Length = 544
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%)
Query: 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIY 129
D+ Y + L +L ++ ++ +A ++ +L R D TF +IR +G EA +
Sbjct: 177 DVIVYNNFLNILIKHNRLDDAICLFRELMRSHSCLDAFTFNILIRGLCTAGDVDEAFELL 236
Query: 130 NEMRSSPATPISLPFRVILKGLI 152
+M S +P + + ++L GL
Sbjct: 237 GDMGSFGCSPDIVTYNILLHGLC 259
>gi|357451329|ref|XP_003595941.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484989|gb|AES66192.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 472
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
KE PD+ Y ++ L+++ +V EAK++ + + D+ T+ ++ G
Sbjct: 299 KEKGVEPDLITYNTLIFGLSKSGRVSEAKKLLRVMAEKGHFPDEVTYTSLMNGMCRKGET 358
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
A+ + EM +P + + +L GL + ++ D +EL+ M
Sbjct: 359 LAALALLEEMEMKGCSPNTCTYNTLLHGLC-----KSRMFDKAMELYGAM 403
Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 56 KLYDVVRKEIWYRPDMFFYRDML---MMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDI 112
+L D++ +E ++PD F Y ++ ML+R + +E V+ +K + V D T+ +
Sbjct: 258 RLVDILEEE-GFKPDCFLYNTIMKGYCMLSRGSEAIE---VYNRMKEKGVEPDLITYNTL 313
Query: 113 IRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
I S SG SEA + M P + + ++ G+
Sbjct: 314 IFGLSKSGRVSEAKKLLRVMAEKGHFPDEVTYTSLMNGMC 353
>gi|295830913|gb|ADG39125.1| AT5G21222-like protein [Capsella grandiflora]
Length = 166
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
++P + Y ++ L R K + +++ + D F II A S+SG +AM
Sbjct: 6 HKPSIITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAM 65
Query: 127 FIYNEMRSSPATPISLPFRVILKG 150
I+ +M+ S P + F ++KG
Sbjct: 66 KIFEKMKESGCKPTTSTFNTLIKG 89
>gi|3107905|dbj|BAA25906.1| leaf protein [Ipomoea nil]
Length = 665
Score = 42.0 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
+RP + Y +L L K+ + + +++ + D F +I AF +SG EAM
Sbjct: 99 HRPTLVTYTTVLAALTLQKRFKSIPLLLKKVEQNGLRPDSIFFNPMINAFCESGNVKEAM 158
Query: 127 FIYNEMRSSPATPISLPFRVILK--GLIPYPEFREKV 161
I+ +MR P + F ++K G+I PE K+
Sbjct: 159 KIFRKMREKGCKPTASTFNALIKGFGIIGKPEESSKL 195
>gi|255557937|ref|XP_002519997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540761|gb|EEF42321.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1429
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 11/145 (7%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
+++ + +Q Q L ++LY + K PD Y ++ L + K+VEA V ++
Sbjct: 392 TIIHMYGKQGQHGLALQLYRDM-KLSGRTPDAITYTVLIDSLGKANKMVEAANVMSEMLN 450
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE--- 156
V T+ +I ++ +G EA ++ MR S P L + V+L + + E
Sbjct: 451 IGVKPTLRTYSALICGYARAGQRLEAEETFDCMRRSGIRPDQLAYSVMLDVFLRFDEATK 510
Query: 157 ----FREKVKDDFLELFPDMIVYDP 177
+RE V+D + PD VY
Sbjct: 511 AMMLYREMVRDG---ITPDPTVYGA 532
>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 477
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD+ Y ++ L +NK+V +A ++ ++ + + + T+ +I F G EA
Sbjct: 230 KPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFS 289
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
+ NEM+ P F +++ L +E D+ + LF +M
Sbjct: 290 LLNEMKLKNINPDVYTFNILIDAL-----GKEGKIDEAISLFEEM 329
Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 51 VFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFG 110
+ LC K+ KE +PD++ Y +L L + ++ AKQ ++ L + + T+
Sbjct: 358 IALCKKM-----KEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYN 412
Query: 111 DIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+I +GL + M + ++M P ++ F+ I+ L
Sbjct: 413 VMINGLCKAGLFGDVMDLKSKMEGKGCMPDAITFKTIICAL 453
Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 69/151 (45%), Gaps = 12/151 (7%)
Query: 2 SKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVV 61
+ E+ VA+ L++L+ H V+ D ++ + ++ L + +R C +++
Sbjct: 211 AGETKAVARLLRKLEGHSVKPDV--------VMYTTIIHCLCKNKRVGDA--CDLYSEMI 260
Query: 62 RKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGL 121
K I P++F Y ++ + EA + ++K + + D +TF +I A G
Sbjct: 261 VKGI--SPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGK 318
Query: 122 PSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
EA+ ++ EM+ P + + ++ GL
Sbjct: 319 IDEAISLFEEMKHKNMFPNIVTYTSLIDGLC 349
>gi|297800104|ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
lyrata]
gi|297313772|gb|EFH44195.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
lyrata]
Length = 817
Score = 42.0 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 30 VSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVE 89
+ R+ + L+S ++ D+ F+ M ++V+K + +PD + Y ++ L KV E
Sbjct: 530 MDRVSYNTLISGCCGNKKLDEAFMFMD--EMVKKGL--KPDNYTYSILIRGLLNMNKVEE 585
Query: 90 AKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
A Q W D KR ++ D +T+ +I + E +++EM S+ P
Sbjct: 586 AIQFWGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQP 635
>gi|296083087|emb|CBI22491.3| unnamed protein product [Vitis vinifera]
Length = 548
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 65/151 (43%), Gaps = 19/151 (12%)
Query: 3 KESLMVAKELKRLQSHP--VRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
K ++ + +E++ P F+ IK H +R ++++ V + + F C
Sbjct: 121 KAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIK----TFQC------ 170
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
PD+ + +L + +N E V++++KR + ++ TF +I ++S G
Sbjct: 171 -------SPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCG 223
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+AM +Y M + P + +L L
Sbjct: 224 SFDQAMAVYKRMLEAGVNPDLSSYNAVLAAL 254
Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 61/122 (50%), Gaps = 4/122 (3%)
Query: 30 VSRLLKSDL---VSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKK 86
V + +K D+ ++L+ F++ + +++++ +R E +P++ + ++ M K
Sbjct: 96 VEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNE-GCKPNICTFNALIKMHGNRGK 154
Query: 87 VVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRV 146
E +V+ED+K + D T+ ++ F +G+ SE ++ EM+ + P F
Sbjct: 155 FTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNT 214
Query: 147 IL 148
++
Sbjct: 215 LI 216
>gi|302776756|ref|XP_002971525.1| hypothetical protein SELMODRAFT_95815 [Selaginella moellendorffii]
gi|300160657|gb|EFJ27274.1| hypothetical protein SELMODRAFT_95815 [Selaginella moellendorffii]
Length = 356
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 59 DVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118
+++R+E+ RPD+F + ++ A ++K QV+ ++K VL D T+ +I+ FS
Sbjct: 123 EMIRQEL--RPDLFSFNALIAAYAMSRKPERGLQVFSNMKAAGVLPDIVTYTTLIQMFSR 180
Query: 119 SGLPSEAMFIYNEMRSSPATP 139
S + EA+ ++ EM + P
Sbjct: 181 SAMHKEAIEMFEEMVVNKCQP 201
>gi|2244996|emb|CAB10416.1| salt-inducible protein homolog [Arabidopsis thaliana]
gi|7268388|emb|CAB78681.1| salt-inducible protein homolog [Arabidopsis thaliana]
Length = 777
Score = 42.0 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 54 CMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113
C+ +Y+ + K + +P++ Y ++ + R K+ +AK +++DL + T+ ++
Sbjct: 374 CLNIYEEM-KALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALV 432
Query: 114 RAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
RA+ + +A+ IY EM+ L VIL + + D+ E+F DM
Sbjct: 433 RAYGRARYGDDALAIYREMKEK-----GLSLTVILYNTLLSMCADNRHVDEAFEIFQDM 486
>gi|357512797|ref|XP_003626687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355520709|gb|AET01163.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 501
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
KE PD+ Y ++ L+++ +V EAK++ + + D+ T+ ++ G
Sbjct: 296 KEKGVEPDLITYNTLIFGLSKSGRVSEAKKLLRVMAEKGHFPDEVTYTSLMNGMCRKGET 355
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
A+ + EM +P + + +L GL + ++ D +EL+ M
Sbjct: 356 LAALALLEEMEMKGCSPNTCTYNTLLHGLC-----KSRMFDKAMELYGAM 400
Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 56 KLYDVVRKEIWYRPDMFFYRDML---MMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDI 112
+L D++ +E ++PD F Y ++ ML+R + +E V+ +K + V D T+ +
Sbjct: 255 RLVDILEEE-GFKPDCFLYNTIMKGYCMLSRGSEAIE---VYNRMKEKGVEPDLITYNTL 310
Query: 113 IRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
I S SG SEA + M P + + ++ G+
Sbjct: 311 IFGLSKSGRVSEAKKLLRVMAEKGHFPDEVTYTSLMNGMC 350
>gi|222635128|gb|EEE65260.1| hypothetical protein OsJ_20463 [Oryza sativa Japonica Group]
Length = 1443
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%)
Query: 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123
E ++PD Y +L A+ V ++V E+L + D T+ +I + G
Sbjct: 356 EKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLD 415
Query: 124 EAMFIYNEMRSSPATPISLPFRVILKGL 151
A+ +Y+EMR+ TP ++ + V++ L
Sbjct: 416 LALGLYDEMRAIGCTPDAVTYTVLVDSL 443
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 32 RLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKK 86
++ KS ++ +L F + VF MK+Y+ + K Y P+M YR M+ +L NK+
Sbjct: 849 KISKSTVLLMLEAFAKAGDVFEVMKIYNGM-KAAGYLPNMHLYRIMISLLCHNKR 902
>gi|125539402|gb|EAY85797.1| hypothetical protein OsI_07159 [Oryza sativa Indica Group]
Length = 506
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDL-KREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
RP + Y ++ L R ++ EA +++ED+ +++ ++ DQ T+ +I F G +A
Sbjct: 227 RPSLVTYSTLIGGLCRGAQMKEAFELFEDMIEKDRIVPDQLTYNLLIGGFCRLGQVEKAQ 286
Query: 127 FIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELF-----PDMIVY 175
I+ MR + P + + ++ G E E + F E+ PD + Y
Sbjct: 287 SIFGFMRKNECEPNAFNYATLINGHCKKGEV-EAARGVFEEMIRSGVQPDAVSY 339
>gi|58013026|gb|AAW62966.1| chloroplast embryo-defective 1270 [Arabidopsis thaliana]
Length = 1429
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 66/146 (45%), Gaps = 7/146 (4%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
+++ + +Q Q+ L ++LY ++ PD Y ++ L + + VEA + ++
Sbjct: 407 TIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLD 466
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
+ T+ +I ++ +G EA ++ M S P +L + V+L L+ E R+
Sbjct: 467 VGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRK 526
Query: 160 KVKDDFLELFPDMIV--YDPPEDLFE 183
L+ DMI + P L+E
Sbjct: 527 A-----WGLYRDMISDGHTPSYTLYE 547
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 53 LCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDI 112
L ++L D+VR RPD Y +L +R+ + A +V+ED++ D T+ +
Sbjct: 280 LAVELLDMVRNS-GLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAM 338
Query: 113 IRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
I + GL +EA ++ E+ P ++ + +L Y RE+ + E++ M
Sbjct: 339 ISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLL-----YAFARERNTEKVKEVYQQM 393
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD Y +L AR + + K+V++ +++ D+ T+ II + G A+ +
Sbjct: 365 PDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQL 424
Query: 129 YNEMRS-SPATPISLPFRVILKGL 151
Y +M+ S P ++ + V++ L
Sbjct: 425 YKDMKGLSGRNPDAITYTVLIDSL 448
>gi|395323299|gb|EJF55778.1| hypothetical protein DICSQDRAFT_141808 [Dichomitus squalens
LYAD-421 SS1]
Length = 1213
Score = 42.0 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++F Y ++ LA+ +K A Q+++D+K + + T+G +I A G + A +
Sbjct: 863 PNIFMYNTIISKLAKARKADYALQLFQDMKAQNIQPTSVTYGAVIAACCRVGDAASAELL 922
Query: 129 YNEMRSSPA-TPISLPFRVILK 149
+ EM S P P P+ +++
Sbjct: 923 FQEMTSEPTFKPRVPPYNTMMQ 944
>gi|8954064|gb|AAF82237.1|AC069143_13 Contains a weak similarity to an actin-binding LIM protein, isoform
a, from Homo sapiens gi|4504999 and contains multiple
LIM proteins PF|00412 and PPR repeats PF|01535. EST
gb|N96780 comes from this gene, partial [Arabidopsis
thaliana]
Length = 763
Score = 42.0 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 19/122 (15%)
Query: 28 SHVSRLLKSDLV-SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKK 86
SHV L +L+ S+L + + C++++++ K+ +RPD Y M+ +L+R +
Sbjct: 573 SHVCSYLADELLNSILRRLRLNPEA--CLEIFNLASKQQKFRPDYKAYCKMVHILSRARN 630
Query: 87 VVEAKQ--------------VWEDLKR--EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYN 130
+ K VW +L R +E F F I++ +++ GL A+ +++
Sbjct: 631 YQQTKSYLCELVALNHSGFVVWGELVRVFKEFSFSPTVFDMILKVYAEKGLVKNALHVFD 690
Query: 131 EM 132
M
Sbjct: 691 NM 692
>gi|334185431|ref|NP_188439.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|322510063|sp|Q5G1S8.2|PP241_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g18110, chloroplastic; AltName: Full=Protein EMBRYO
DEFECTIVE 1270; Flags: Precursor
gi|9294066|dbj|BAB02023.1| unnamed protein product [Arabidopsis thaliana]
gi|332642528|gb|AEE76049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1440
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 66/146 (45%), Gaps = 7/146 (4%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
+++ + +Q Q+ L ++LY ++ PD Y ++ L + + VEA + ++
Sbjct: 407 TIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLD 466
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
+ T+ +I ++ +G EA ++ M S P +L + V+L L+ E R+
Sbjct: 467 VGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRK 526
Query: 160 KVKDDFLELFPDMIV--YDPPEDLFE 183
L+ DMI + P L+E
Sbjct: 527 A-----WGLYRDMISDGHTPSYTLYE 547
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 53 LCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDI 112
L ++L D+VR RPD Y +L +R+ + A +V+ED++ D T+ +
Sbjct: 280 LAVELLDMVRNS-GLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAM 338
Query: 113 IRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
I + GL +EA ++ E+ P ++ + +L Y RE+ + E++ M
Sbjct: 339 ISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLL-----YAFARERNTEKVKEVYQQM 393
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD Y +L AR + + K+V++ +++ D+ T+ II + G A+ +
Sbjct: 365 PDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQL 424
Query: 129 YNEMRS-SPATPISLPFRVILKGL 151
Y +M+ S P ++ + V++ L
Sbjct: 425 YKDMKGLSGRNPDAITYTVLIDSL 448
>gi|356523408|ref|XP_003530332.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18950-like [Glycine max]
Length = 577
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
K+ Y PD Y ++ L +++ EA+++W ++ ++ +++T+ ++ + G
Sbjct: 310 KDRGYFPDRVMYTTVIKGLCEMQRLGEARKLWFEMIKKGFQPNEYTYNVMMHGYCKIGDL 369
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELF-----PDMIVYD 176
+EA I+ +MR ++ + ++ GL + ++ + F E+F PD+I Y+
Sbjct: 370 AEARKIFEDMRDRGYAETTVSYGTMISGLCLHGR-TDEAQSLFEEMFQKGIVPDLITYN 427
Score = 39.3 bits (90), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 58/122 (47%), Gaps = 6/122 (4%)
Query: 32 RLLKSDLVSVLAEFQRQDQVFLCMKL-YDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEA 90
R++ + ++ L E QR + KL +++++K ++P+ + Y M+ + + EA
Sbjct: 318 RVMYTTVIKGLCEMQRLGEA---RKLWFEMIKKG--FQPNEYTYNVMMHGYCKIGDLAEA 372
Query: 91 KQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG 150
++++ED++ ++G +I G EA ++ EM P + + ++K
Sbjct: 373 RKIFEDMRDRGYAETTVSYGTMISGLCLHGRTDEAQSLFEEMFQKGIVPDLITYNCLIKA 432
Query: 151 LI 152
L
Sbjct: 433 LC 434
>gi|295830911|gb|ADG39124.1| AT5G21222-like protein [Capsella grandiflora]
Length = 166
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
++P + Y ++ L R K + +++ + D F II A S+SG +AM
Sbjct: 6 HKPSIITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAM 65
Query: 127 FIYNEMRSSPATPISLPFRVILKG 150
I+ +M+ S P + F ++KG
Sbjct: 66 KIFEKMKESGCKPTTSTFNTLIKG 89
>gi|125582060|gb|EAZ22991.1| hypothetical protein OsJ_06687 [Oryza sativa Japonica Group]
Length = 466
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 73/157 (46%), Gaps = 18/157 (11%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
S+L F Q V + ++L+ + + +PD+F Y +L L R + +A ++ ++
Sbjct: 286 SLLNGFSEQGLVEVAIQLF----RSMPCKPDIFSYNAVLKGLCRAARWEDAGELIAEMVG 341
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
++ ++ TF +I + GL A+ + +M + +TP + ++ G F E
Sbjct: 342 KDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALING------FSE 395
Query: 160 KVK-DDFLELF------PDMIVYDPP-EDLFEDQEWR 188
+ + DD L+L PD I Y+ + L + W+
Sbjct: 396 QGRLDDALKLLSTMSCKPDAISYNSTLKGLCRAERWQ 432
>gi|295830917|gb|ADG39127.1| AT5G21222-like protein [Capsella grandiflora]
Length = 166
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
++P + Y ++ L R K + +++ + D F II A S+SG +AM
Sbjct: 6 HKPSIITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAM 65
Query: 127 FIYNEMRSSPATPISLPFRVILKG 150
I+ +M+ S P + F ++KG
Sbjct: 66 KIFEKMKESGCKPTTSTFNTLIKG 89
>gi|295830915|gb|ADG39126.1| AT5G21222-like protein [Capsella grandiflora]
Length = 166
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
++P + Y ++ L R K + +++ + D F II A S+SG +AM
Sbjct: 6 HKPSIITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAM 65
Query: 127 FIYNEMRSSPATPISLPFRVILKG 150
I+ +M+ S P + F ++KG
Sbjct: 66 KIFEKMKESGCKPTTSTFNTLIKG 89
>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g19440, chloroplastic; Flags: Precursor
Length = 838
Score = 42.0 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Query: 30 VSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVE 89
+ R+ + L+S ++ D+ F M L ++V++ + +PD + Y ++ L KV E
Sbjct: 551 MDRVSYNTLISGCCGKKKLDEAF--MFLDEMVKRGL--KPDNYTYSILICGLFNMNKVEE 606
Query: 90 AKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILK 149
A Q W+D KR +L D +T+ +I + E ++EM S P ++ + +++
Sbjct: 607 AIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIR 666
Query: 150 G 150
Sbjct: 667 A 667
>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
Length = 695
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 59/128 (46%), Gaps = 9/128 (7%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
++L+D + + RPD+ Y ++ + R + +A +W+D+ E+ + T+ +I
Sbjct: 360 LQLFDTMLNQ-RLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILID 418
Query: 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLE------L 168
+ + G +A +EM + P + + I+KG + K FL+ +
Sbjct: 419 SHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQK--FLQKMMVNKV 476
Query: 169 FPDMIVYD 176
PD+I Y+
Sbjct: 477 SPDLITYN 484
>gi|302801820|ref|XP_002982666.1| hypothetical protein SELMODRAFT_421954 [Selaginella moellendorffii]
gi|300149765|gb|EFJ16419.1| hypothetical protein SELMODRAFT_421954 [Selaginella moellendorffii]
Length = 796
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 5/112 (4%)
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
+R++ WY P + + +L R K ++V DLK ++ + +I+ + +
Sbjct: 125 IRRQKWYVPSTYSFSILLNTYGRGKDFQAVQRVLADLKADKCPMTTVAYNTLIKVYGKAH 184
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
EA Y EM+ S P F ++ L Y EKV LE++ +M
Sbjct: 185 KLDEAWGYYKEMQDSRCVPDIFTFNTLMS-LYSYAGQSEKV----LEVYDEM 231
>gi|295830909|gb|ADG39123.1| AT5G21222-like protein [Capsella grandiflora]
gi|295830919|gb|ADG39128.1| AT5G21222-like protein [Capsella grandiflora]
Length = 166
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
++P + Y ++ L R K + +++ + D F II A S+SG +AM
Sbjct: 6 HKPSIITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAM 65
Query: 127 FIYNEMRSSPATPISLPFRVILKG 150
I+ +M+ S P + F ++KG
Sbjct: 66 KIFEKMKESGCKPTTSTFNTLIKG 89
>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
Japonica Group]
gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
Japonica Group]
gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
Length = 648
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 59/128 (46%), Gaps = 9/128 (7%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
++L+D + + RPD+ Y ++ + R + +A +W+D+ E+ + T+ +I
Sbjct: 421 LQLFDTMLNQ-RLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILID 479
Query: 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLE------L 168
+ + G +A +EM + P + + I+KG + K FL+ +
Sbjct: 480 SHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQK--FLQKMMVNKV 537
Query: 169 FPDMIVYD 176
PD+I Y+
Sbjct: 538 SPDLITYN 545
>gi|147771903|emb|CAN75708.1| hypothetical protein VITISV_031421 [Vitis vinifera]
Length = 1313
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 51/103 (49%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
+++++ ++ + Y P++ Y +L +L R +K E + W ++ + VL +T+G ++
Sbjct: 473 LRVFEWIKSQEDYVPNVIHYNVVLRVLGRAQKWDELRLCWIEMAKNGVLPTNNTYGMLVD 532
Query: 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEF 157
+ +GL EA+ M+ P + +++ L EF
Sbjct: 533 VYGKAGLVKEALLWIKHMKLRGVFPDEVTMNTVVRVLKDAGEF 575
Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 42 LAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE 101
L+ + + +K Y +R E+ PD+ +R +L +L V E + V ++KR
Sbjct: 727 LSLYADGGNIDAALKCYRKIR-EVGLFPDVVTHRAVLHVLCERNMVGEVETVIAEMKRSR 785
Query: 102 VLFDQHTFGDIIRAFSDSGLPSEA 125
V D+H+ +I+ + + GL +A
Sbjct: 786 VRVDEHSIPVVIKMYVNEGLLDKA 809
>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
Length = 629
Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 78/163 (47%), Gaps = 16/163 (9%)
Query: 24 RFIKSHVSRLLKSDLVSVLA---EFQRQDQVFLCMKLYD-VVRKEIWYRPDMFFYRDMLM 79
R + + + R + ++V+ A F ++ ++ KLYD ++++ I PD+F Y ++
Sbjct: 311 RLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI--DPDIFTYSSLIN 368
Query: 80 MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
+ ++ EAK ++E + ++ + T+ +I+ F + E M ++ EM
Sbjct: 369 GFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG 428
Query: 140 ISLPFRVILKGLIPYPE-------FREKVKDDFLELFPDMIVY 175
++ + +++GL + F++ V D + PD+I Y
Sbjct: 429 NTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG---VPPDIITY 468
>gi|242093812|ref|XP_002437396.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
gi|241915619|gb|EER88763.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
Length = 786
Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 42/85 (49%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
Y PD+ + ML M A+N + ++++ +K+ + D T+ ++ ++ EA
Sbjct: 590 YNPDLVIFNSMLSMYAKNGMYSKVTEIFDSIKQSGLSPDLITYNSLMDMYAKCSESWEAE 649
Query: 127 FIYNEMRSSPATPISLPFRVILKGL 151
I N+++SS P + + ++ G
Sbjct: 650 KILNQLKSSQVKPDVVSYNTVINGF 674
>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
Length = 460
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 56 KLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
KL++++ ++ P++ Y ++ ++ ++ EAK + ++ + + D T+ ++R
Sbjct: 206 KLFNIMDRK-GCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRG 264
Query: 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
F G P EA + EM S P + + ++L GL + E
Sbjct: 265 FCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDE 308
>gi|297739041|emb|CBI28530.3| unnamed protein product [Vitis vinifera]
Length = 452
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 73 FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD-------SGLPSEA 125
YR + + K V EA+++ +++K ++ D + +R + SGL EA
Sbjct: 182 IYRSLFYGWSEQKNVKEARRILKEMKSVGIMPDLFCYNTFLRCLCERNLKSNPSGLVPEA 241
Query: 126 MFIYNEMRSSPATPISLPFRVILKGL 151
+ + EMRS+ TP S+ + ++L L
Sbjct: 242 LNVMMEMRSNRITPTSISYNILLSCL 267
>gi|302763957|ref|XP_002965400.1| hypothetical protein SELMODRAFT_71785 [Selaginella moellendorffii]
gi|300167633|gb|EFJ34238.1| hypothetical protein SELMODRAFT_71785 [Selaginella moellendorffii]
Length = 174
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P+ F + ML+ A+N +++EAK+ +E + + V DQ F I+ A S +G + +
Sbjct: 24 PNDFSWNSMLLTFAQNGRLIEAKKTFERMDGKNVTPDQIAFTSILAACSHAGFVEQCCAL 83
Query: 129 YNEM 132
+ M
Sbjct: 84 FESM 87
>gi|147778634|emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]
Length = 1494
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
+ PD Y +L AR V + K++ ED+ + D+ T+ II + G A
Sbjct: 392 FLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAF 451
Query: 127 FIYNEMRSSPATPISLPFRVILKGL 151
+Y++M+ S +P ++ + V++ L
Sbjct: 452 QLYSDMKLSGRSPDAVTYTVLIDSL 476
>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62680, mitochondrial; Flags: Precursor
gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 548
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 71/141 (50%), Gaps = 7/141 (4%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
S++ F R+++V + L D + EI Y+PD+ Y ++ L + K+V +A +++++R
Sbjct: 160 SLVNGFCRRNRVSDAVSLVDKM-VEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIER 218
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
+ + + T+ ++ +S S+A + ++M TP + + +L + + E
Sbjct: 219 KGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLE 278
Query: 160 KVKDDFLELF-----PDMIVY 175
K+ F E+ PD++ Y
Sbjct: 279 -AKELFEEMVRMSIDPDIVTY 298
Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 43/91 (47%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD++ Y +L L N ++ +A ++ED+++ E+ D T+ +IR +G EA +
Sbjct: 398 PDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSL 457
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
+ + P + + ++ GL E
Sbjct: 458 FCSLSLKGLKPDIVTYTTMMSGLCTKGLLHE 488
>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
Length = 548
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 71/141 (50%), Gaps = 7/141 (4%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
S++ F R+++V + L D + EI Y+PD+ Y ++ L + K+V +A +++++R
Sbjct: 160 SLVNGFCRRNRVSDAVSLVDKM-VEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIER 218
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
+ + + T+ ++ +S S+A + ++M TP + + +L + + E
Sbjct: 219 KGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLE 278
Query: 160 KVKDDFLELF-----PDMIVY 175
K+ F E+ PD++ Y
Sbjct: 279 -AKELFEEMVRMSIDPDIVTY 298
Score = 39.3 bits (90), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 43/91 (47%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD++ Y +L L N ++ +A ++ED+++ E+ D T+ +IR +G EA +
Sbjct: 398 PDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSL 457
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
+ + P + + ++ GL E
Sbjct: 458 FCSLSLKGLKPDIVTYTTMMSGLCTKGLLHE 488
>gi|449531597|ref|XP_004172772.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g08210-like [Cucumis sativus]
Length = 680
Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIY 129
D+F +++ M A V +A++V++++ ++ T+ ++ AF+D G P EA+ +Y
Sbjct: 37 DVFLANNLISMYAEFFNVRDAEKVFDEMTDRNIV----TWTTMVSAFTDGGRPYEAIRLY 92
Query: 130 NEMRSSPATPISLPFRVILKG 150
N+M S TP + +LK
Sbjct: 93 NDMPKS-ETPNGYMYSAVLKA 112
>gi|449445246|ref|XP_004140384.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g08210-like [Cucumis sativus]
Length = 688
Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIY 129
D+F +++ M A V +A++V++++ ++ T+ ++ AF+D G P EA+ +Y
Sbjct: 37 DVFLANNLISMYAEFFNVRDAEKVFDEMTDRNIV----TWTTMVSAFTDGGRPYEAIRLY 92
Query: 130 NEMRSSPATPISLPFRVILKG 150
N+M S TP + +LK
Sbjct: 93 NDMPKS-ETPNGYMYSAVLKA 112
>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
Length = 1627
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
+ ++D + K + PD++ Y ++ LAR + EA ++ + D +++ I+
Sbjct: 1486 INMFDEMNK-LGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILN 1544
Query: 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
+ +G P AM + + M+ S P + + +L L F E K
Sbjct: 1545 GLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASK 1592
Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100
++A F + + + L++ +R + + RPD+F Y +++ L + ++ EA + +++RE
Sbjct: 1261 LIALFFKFNDAHGALSLFEEMRHQ-YCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQRE 1319
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
D ++I +G +AM ++ EM + P + + I+K L
Sbjct: 1320 GCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKAL 1370
>gi|356510096|ref|XP_003523776.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g18475-like [Glycine max]
Length = 640
Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P+++ Y ++ L + K+ +AK V ++K + D T+ +I +G EAM +
Sbjct: 432 PNVYNYSALVDGLCKVGKLEDAKGVLAEMKGSGLKPDTVTYTSLINFLCRNGQIGEAMGL 491
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVY 175
E++ + ++ F VIL GL F E + D LE P VY
Sbjct: 492 LKEIKENTCQADTVTFNVILGGLCREDRFEEAL--DMLEKLPQQGVY 536
Score = 40.4 bits (93), Expect = 0.40, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDL-KREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
P++F Y + L RN +V EA +++E++ R+ ++ D T+ +I F G P A
Sbjct: 361 PNLFTYSTFMDGLCRNGRVKEAFELFEEMVSRDHIVPDPLTYNVLINEFCRRGKPDRARN 420
Query: 128 IYNEMRSSPATPISLPFRVILKGL 151
+ M+S+ P + ++ GL
Sbjct: 421 VIEFMKSNRCYPNVYNYSALVDGL 444
>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
Length = 609
Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD F Y ++ L + K+ EA+Q+ + D + II AF SG EA
Sbjct: 317 PDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKT 376
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFRE-----KVKDDFLELFPDMIVY 175
EMR +P + + ++ GL + E + + ++ PD++ Y
Sbjct: 377 LQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTY 428
Score = 38.1 bits (87), Expect = 2.0, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 36/72 (50%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
RP++ Y ++ L +++K +EAK+V E++K V D T+ +I + EA
Sbjct: 281 RPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQ 340
Query: 128 IYNEMRSSPATP 139
+ M S TP
Sbjct: 341 MLRRMAGSGCTP 352
>gi|242046988|ref|XP_002461240.1| hypothetical protein SORBIDRAFT_02g043430 [Sorghum bicolor]
gi|241924617|gb|EER97761.1| hypothetical protein SORBIDRAFT_02g043430 [Sorghum bicolor]
Length = 551
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++ Y ML L + + +A++++ + ++EV D TF +I S EA+ +
Sbjct: 429 PNVNLYNIMLHNLCKAGQFEQAQKIFLQMIQKEVSPDVITFNTLIYWLGKSSRAIEAVDL 488
Query: 129 YNEMRSSPATPISLPFRVILKGLI 152
+ +MR+ P SL FR ++ GL+
Sbjct: 489 FRDMRARGVEPDSLTFRYLISGLL 512
>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
Length = 610
Score = 41.6 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD Y +L+ R EAK+++ ++ R+ V+ D +F +I FS + +A+
Sbjct: 221 PDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVY 280
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFRE--KVKDDFLE--LFPDMIVYD 176
+ +M+ P ++ + V++ G E K++D+ LE D+I Y+
Sbjct: 281 FRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYN 332
Score = 37.4 bits (85), Expect = 3.1, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+ + ++ + +RN+ + +A + D+K+ ++ D + ++ + +G EA+ I
Sbjct: 256 PDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKI 315
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
+EM + + IL GL +EK+ D +LF +M+
Sbjct: 316 RDEMLEQGCVLDVIAYNTILNGLC-----KEKMLTDADKLFDEMV 355
>gi|414883744|tpg|DAA59758.1| TPA: hypothetical protein ZEAMMB73_211431 [Zea mays]
Length = 732
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL 97
+V LA D++ +++ +R E+ RPD+F Y ++ + R + +VW+++
Sbjct: 276 MVRALAHAGMVDRL---LEMIGRMRNEVC-RPDVFVYTALVKTMVRRGYMDGCMRVWDEM 331
Query: 98 KREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS 134
+++ V D + ++ +G+ EA ++ EMRS
Sbjct: 332 EKDGVEPDTMAYATMVGGLCKAGMVEEAAELFKEMRS 368
>gi|356523086|ref|XP_003530173.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g17670-like [Glycine max]
Length = 456
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 42/90 (46%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
KE PD+ Y ++ L+++ +V EA+++ + + D+ T+ ++ G
Sbjct: 285 KEEGVEPDLVTYNTLIFGLSKSGRVTEARKLLRVMAEKGYFPDEVTYTSLMNGLCRKGDA 344
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLI 152
A+ + EM + +P + + +L GL
Sbjct: 345 LGALALLGEMEAKGCSPNACTYNTLLHGLC 374
>gi|359490016|ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Vitis vinifera]
Length = 1442
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
+ PD Y +L AR V + K++ ED+ + D+ T+ II + G A
Sbjct: 360 FLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAF 419
Query: 127 FIYNEMRSSPATPISLPFRVILKGL 151
+Y++M+ S +P ++ + V++ L
Sbjct: 420 QLYSDMKLSGRSPDAVTYTVLIDSL 444
>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 788
Score = 41.6 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 41/85 (48%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
Y+P++ + ++ N + +A ++L + LFDQ T+G +I S +G A+
Sbjct: 121 YQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAAL 180
Query: 127 FIYNEMRSSPATPISLPFRVILKGL 151
+ EM S P + + ++ GL
Sbjct: 181 HLLQEMEKSSVQPNLVMYSALIDGL 205
>gi|224140601|ref|XP_002323670.1| predicted protein [Populus trichocarpa]
gi|222868300|gb|EEF05431.1| predicted protein [Populus trichocarpa]
Length = 535
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Query: 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWE 95
+ L ++ F + Q+ ++++V+ + I +P++ Y +L + ++ EA ++ E
Sbjct: 212 ATLTILINSFCKMGQLQNTFQVFEVMDR-IGCKPNIQTYNCLLKGMCYVGRIDEAFELME 270
Query: 96 DLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG 150
D+K+ V D +T+ ++ F G EAM + NE P + F +L G
Sbjct: 271 DIKKTTVEPDIYTYTAMMDGFCKVGRSDEAMELLNEAMEMGLAPNVVTFNTLLDG 325
>gi|356555026|ref|XP_003545840.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g38730-like [Glycine max]
Length = 587
Score = 41.6 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIY 129
D+F Y +L + + EA + ++RE + D ++ +I F G EAM ++
Sbjct: 230 DIFTYNTLLSLYCKKGMHYEALSIQNRMEREGINLDIVSYNSLIYGFCKEGRMREAMRMF 289
Query: 130 NEMRSSPATPISLPFRVILKGLIPYPEFREKVKD-DFLE---LFPDMIVYD 176
+E+++ ATP + + ++ G E E +K +E L+P ++ Y+
Sbjct: 290 SEIKN--ATPNHVTYTTLIDGYCKTNELEEALKMCKLMEAKGLYPGVVTYN 338
>gi|334187522|ref|NP_196448.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635617|sp|P0C8Q6.1|PP368_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g08310, mitochondrial; Flags: Precursor
gi|332003898|gb|AED91281.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 832
Score = 41.6 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 20/94 (21%)
Query: 92 QVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG- 150
+++ED K +V+ T+ +I SG PSEA+F +NEM+ P + F +++G
Sbjct: 674 RMYEDEKNPDVI----TYTSLIHGLCASGRPSEAIFRWNEMKGKDCYPNRITFMALIQGL 729
Query: 151 ---------LIPYPEFREKVKDDFLELFPDMIVY 175
L+ + E EK E+ PD VY
Sbjct: 730 CKCGWSGEALVYFREMEEK------EMEPDSAVY 757
Score = 40.8 bits (94), Expect = 0.25, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
+VL F+R +L ++ K+ YR DM+ Y M +L+R ++ K + D+
Sbjct: 78 TVLNGFKRWGLAYL---FFNWASKQEGYRNDMYAYNAMASILSRARQNASLKALVVDVLN 134
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133
FG IR ++GL EA +++ +R
Sbjct: 135 SRCFMSPGAFGFFIRCLGNAGLVDEASSVFDRVR 168
>gi|302819880|ref|XP_002991609.1| hypothetical protein SELMODRAFT_133813 [Selaginella moellendorffii]
gi|300140642|gb|EFJ07363.1| hypothetical protein SELMODRAFT_133813 [Selaginella moellendorffii]
Length = 356
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 59 DVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118
+++R+E+ RPD+F + ++ A ++K QV+ ++K VL D T+ +I+ FS
Sbjct: 123 EMIRQEL--RPDLFSFNALIAAYAMSRKPERGLQVFSNMKAAGVLPDIVTYTTLIQMFSR 180
Query: 119 SGLPSEAMFIYNEMRSSPATP 139
S + EA+ ++ EM + P
Sbjct: 181 SSMHKEAIEMFEEMVVNKCQP 201
>gi|297737369|emb|CBI26570.3| unnamed protein product [Vitis vinifera]
Length = 1042
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
+ PD Y +L AR V + K++ ED+ + D+ T+ II + G A
Sbjct: 335 FLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAF 394
Query: 127 FIYNEMRSSPATPISLPFRVILKGL 151
+Y++M+ S +P ++ + V++ L
Sbjct: 395 QLYSDMKLSGRSPDAVTYTVLIDSL 419
>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 41.6 bits (96), Expect = 0.16, Method: Composition-based stats.
Identities = 26/114 (22%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P + Y ++ + +++ EAK + ++ +E+ D T+ +++ G P EA+ +
Sbjct: 370 PVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNL 429
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVK------DDFLELFPDMIVYD 176
+ EM SS P + + +L GL + E +K + +E PD+++Y+
Sbjct: 430 FKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIE--PDIVLYN 481
>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
Length = 695
Score = 41.6 bits (96), Expect = 0.16, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 41/85 (48%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
Y+P++ + ++ N + +A ++L + LFDQ T+G +I S +G A+
Sbjct: 121 YQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAAL 180
Query: 127 FIYNEMRSSPATPISLPFRVILKGL 151
+ EM S P + + ++ GL
Sbjct: 181 HLLQEMEKSSVQPNLVMYSALIDGL 205
>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
Length = 471
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 11/154 (7%)
Query: 24 RFIKSHVSRLLKSDLVS---VLAEFQRQDQVFLCMKLY-DVVRKEIWYRPDMFFYRDMLM 79
+F S SR D+V+ +L ++ + MKL+ DV+ K Y PD Y +L+
Sbjct: 205 QFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAK--GYMPDTVTYNSILL 262
Query: 80 MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
LAR + EA+++++ + + T+ ++ + +A + EM A P
Sbjct: 263 GLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVP 322
Query: 140 ISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
+ + ++L GL + + D ELF M+
Sbjct: 323 DVVTYNILLDGLC-----KTNLVDKAHELFSTMV 351
Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Query: 66 WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEA 125
Y PD Y +L L R KV EAKQ ++ + D + ++ A G EA
Sbjct: 179 GYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEA 238
Query: 126 MFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174
M ++ ++ + P ++ + IL GL R+ D+ E+F M+
Sbjct: 239 MKLFKDVIAKGYMPDTVTYNSILLGLA-----RKSNMDEAEEMFKKMVA 282
>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Brachypodium distachyon]
Length = 878
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/116 (18%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWE 95
+ L+ L + + D+ +C + KE+ P+ + Y ++ L R +K +A W+
Sbjct: 704 NSLMDALVKTEEIDEALICFQ----SMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQ 759
Query: 96 DLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+++++ ++ + T+ +I + G ++A ++ +++ P S F +++G+
Sbjct: 760 EMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFERFKTNGGIPDSASFNALIEGM 815
>gi|302798519|ref|XP_002981019.1| hypothetical protein SELMODRAFT_114007 [Selaginella moellendorffii]
gi|300151073|gb|EFJ17720.1| hypothetical protein SELMODRAFT_114007 [Selaginella moellendorffii]
Length = 448
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 15/149 (10%)
Query: 36 SDLVSVLAEFQRQDQVFLCMKLYDV-VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVW 94
+ L+SVL + R D MK++D+ V KEI P++ Y +L R +K+ A +++
Sbjct: 153 TALISVLCKHNRADDA---MKVFDIMVEKEIV--PNVDVYTSLLAAHCRTRKLDGAYRLF 207
Query: 95 EDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP-----ISLPFRVILK 149
++ + T+G ++R + G A I++ MRS P SL + +
Sbjct: 208 VEMIQRGYGPSASTYGLLLRCLCNGGRSYLAYDIHSSMRSRGHVPDENTYASLIYGCCMA 267
Query: 150 GLIPYPE--FREKVKDDFLELFPDMIVYD 176
G I + F+E ++ + +L D +Y+
Sbjct: 268 GRITEAKVLFKEVLEGEKAQL--DAGIYN 294
>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
Length = 702
Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 41/85 (48%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
++PD+ Y ++ L R+KKV A ++W+++ + D +I +G EA
Sbjct: 540 FKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAF 599
Query: 127 FIYNEMRSSPATPISLPFRVILKGL 151
IY EM+ +P + + ++ G
Sbjct: 600 CIYLEMKEKNCSPNLVTYNTLMDGF 624
Score = 40.8 bits (94), Expect = 0.27, Method: Composition-based stats.
Identities = 24/110 (21%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIY 129
D+F Y M+ ++ + +A +V++++ ++ + H + +I F ++A+ IY
Sbjct: 438 DVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIY 497
Query: 130 NEMRSSPATPISLPFRVILKGLIPYPEFRE--KVKDDFLE--LFPDMIVY 175
EM S+ P + + ++ GL +++E + + LE PD+ Y
Sbjct: 498 IEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTY 547
>gi|125528270|gb|EAY76384.1| hypothetical protein OsI_04314 [Oryza sativa Indica Group]
Length = 665
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 53/114 (46%)
Query: 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100
+LA R+ + + L+ +R +PD+ + +L + EA +++ ++R
Sbjct: 276 ILAALARRGRHLAAVSLFTHMRTVARVKPDLSVFNIVLNAYGQLDLAREADRLFWSMRRA 335
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPY 154
V T+ ++R + D+GL EA+ ++ MRS+ + VI ++ Y
Sbjct: 336 GVAPSVVTYNTMLRVYGDAGLFGEAVHLFGLMRSAASDGSDRGGSVIKPNVVTY 389
>gi|357116934|ref|XP_003560231.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g73710-like [Brachypodium distachyon]
Length = 922
Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 11/117 (9%)
Query: 42 LAEFQRQDQVFLCMKLYDVVR------KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWE 95
+ E+ + + K YD V KE PD Y ++ M + A ++
Sbjct: 481 IVEYNVMVKAYGLAKRYDRVTSLLENMKESGISPDECTYNSLIQMFSAGGFPQRANKLLR 540
Query: 96 DLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
+K + T+ IIR +S S L SEA+ +YNEM++S P V++ GL+
Sbjct: 541 KMKETGLKPSCETYSAIIRTYSHSFLASEAIDLYNEMKASDVEP-----NVVVYGLL 592
Score = 37.0 bits (84), Expect = 4.4, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 43 AEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEV 102
A RQ L+D VR Y P+ Y +L LAR ++ E ++ W + R++
Sbjct: 94 ALLSRQRHWRRARDLFDRVRALPGYAPNPVHYSVLLRHLARARRWSELRRTWLRMVRDDA 153
Query: 103 LFDQH-TFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
L + + + A + +GL E++ + MR+ P
Sbjct: 154 LTPTNPAYTALADALAKAGLAQESLLLLLHMRAQGVAP 191
>gi|347954454|gb|AEP33727.1| chlororespiratory reduction 21 [Arabis hirsuta]
Length = 824
Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 61/114 (53%), Gaps = 10/114 (8%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
+ D+ + M A+ VV+AK+V++ +++++ + ++ A+++SGL EA+
Sbjct: 398 FESDIVLASTAVDMYAKCGSVVDAKKVFDSTVQKDLIL----WNTLLAAYAESGLSGEAL 453
Query: 127 FIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLEL-----FPDMIVY 175
++ EM+ P + + +I+ L+ + E K+ FL++ FP+MI +
Sbjct: 454 RLFYEMQLESVPPNVITWNLIILSLLRNGQVNE-AKEMFLQMQSSGTFPNMISW 506
>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
Length = 794
Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIY 129
D F +L L + K+ EA+++ + + D+ ++G ++ A+ P A++++
Sbjct: 455 DTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLW 514
Query: 130 NEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176
+EM TP + ++KGL + E + D EL +V D
Sbjct: 515 DEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAI-DKLNELMKKGLVPD 560
Score = 38.1 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 75/181 (41%), Gaps = 24/181 (13%)
Query: 3 KESLMVAKELKRLQSHP--VRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+ SL V + L L+ HP F+ + +H S+ +D +S L+ Q
Sbjct: 192 QASLDVFRSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQ-------------- 237
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
PD+ Y +L R + EA+ + +K+E + + T+ ++ A++ G
Sbjct: 238 ---GFGLSPDVVTYNTLLKAHCRKGMLGEARTLLARMKKEGIAPTRATYNTLVSAYARLG 294
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE--KVKDDFLEL---FPDMIVY 175
+A + M + P + V+ GL + E K+KD+ L PD++ Y
Sbjct: 295 WIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTY 354
Query: 176 D 176
+
Sbjct: 355 N 355
>gi|115440859|ref|NP_001044709.1| Os01g0833000 [Oryza sativa Japonica Group]
gi|20805252|dbj|BAB92918.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113534240|dbj|BAF06623.1| Os01g0833000 [Oryza sativa Japonica Group]
Length = 665
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 53/114 (46%)
Query: 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100
+LA R+ + + L+ +R +PD+ + +L + EA +++ ++R
Sbjct: 276 ILAALARRGRHLAAVSLFTHMRAVARVKPDLSVFNIVLNAYGQLDLAREADRLFWSMRRA 335
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPY 154
V T+ ++R + D+GL EA+ ++ MRS+ + VI ++ Y
Sbjct: 336 GVAPSVVTYNTMLRVYGDAGLFGEAVHLFGLMRSAASDGSDRGGSVIKPNVVTY 389
>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62930, chloroplastic; Flags: Precursor
gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 629
Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 77/163 (47%), Gaps = 16/163 (9%)
Query: 24 RFIKSHVSRLLKSDLVSVLA---EFQRQDQVFLCMKLYD-VVRKEIWYRPDMFFYRDMLM 79
R + + R + ++V+ A F ++ ++ KLYD ++++ I PD+F Y ++
Sbjct: 311 RLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI--DPDIFTYSSLIN 368
Query: 80 MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
+ ++ EAK ++E + ++ + T+ +I+ F + E M ++ EM
Sbjct: 369 GFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG 428
Query: 140 ISLPFRVILKGLIPYPE-------FREKVKDDFLELFPDMIVY 175
++ + +++GL + F++ V D + PD+I Y
Sbjct: 429 NTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG---VPPDIITY 468
>gi|357448559|ref|XP_003594555.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483603|gb|AES64806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
Y D+F + +L LA+++KV +A +V+ED+KR D T+ +IR +G E++
Sbjct: 219 YSLDIFAFNMLLDALAKDQKVDKAYKVFEDMKRRHCEPDTFTYTIMIRMTGKAGKTDESL 278
Query: 127 FIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
++ M T + + +++ L + ++ D + LF M+
Sbjct: 279 ALFQAMLEKGFTLNLIAYNTMIEALA-----KGRMADKAVLLFSKMV 320
>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
Length = 695
Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 26/113 (23%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 40 SVLAEFQRQDQVFLCMK-LYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLK 98
+++ + R Q+ C L D+ K I + ++ + ++ +N K+ EA + +D+
Sbjct: 445 TLIDAYGRAGQLEKCFTVLSDMQDKGI--KSNVISFGSVVKAFCKNGKIPEAVAILDDMI 502
Query: 99 REEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
++V+ + + II A+ +SG +A + +M+SS + + ++LKGL
Sbjct: 503 HKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGL 555
>gi|125572530|gb|EAZ14045.1| hypothetical protein OsJ_03970 [Oryza sativa Japonica Group]
Length = 665
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 53/114 (46%)
Query: 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100
+LA R+ + + L+ +R +PD+ + +L + EA +++ ++R
Sbjct: 276 ILAALARRGRHLAAVSLFTHMRAVARVKPDLSVFNIVLNAYGQLDLAREADRLFWSMRRA 335
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPY 154
V T+ ++R + D+GL EA+ ++ MRS+ + VI ++ Y
Sbjct: 336 GVAPSVVTYNTMLRVYGDAGLFGEAVHLFGLMRSAASDGSDRGGSVIKPNVVTY 389
>gi|115465970|ref|NP_001056584.1| Os06g0111300 [Oryza sativa Japonica Group]
gi|113594624|dbj|BAF18498.1| Os06g0111300 [Oryza sativa Japonica Group]
Length = 978
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 66/131 (50%), Gaps = 6/131 (4%)
Query: 22 FDRFIKSHVSRLLKS--DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLM 79
+DR I S + R +++ ++SV + + ++ ++++ +E+ D Y +ML
Sbjct: 704 YDRMISSGIPRSMQTFNIMISVYGQGGKLEKA---VEMFSAA-QELGLPIDEKTYTNMLS 759
Query: 80 MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
+ K EA ++ +K + + + +F +I A++ SGL +EA I+ EM+ + P
Sbjct: 760 FYGKAGKHHEASLLFSRMKEDGIRPGKISFNTMINAYATSGLHNEAEIIFQEMQKNNHVP 819
Query: 140 ISLPFRVILKG 150
S + +++
Sbjct: 820 DSHTYLALIRA 830
>gi|225447241|ref|XP_002272784.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g73710-like [Vitis vinifera]
Length = 1008
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 51/103 (49%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
+++++ ++ + Y P++ Y +L +L R +K E + W ++ + VL +T+G ++
Sbjct: 168 LRVFEWIKSQEDYVPNVIHYNVVLRVLGRAQKWDELRLCWIEMAKNGVLPTNNTYGMLVD 227
Query: 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEF 157
+ +GL EA+ M+ P + +++ L EF
Sbjct: 228 VYGKAGLVKEALLWIKHMKLRGVFPDEVAMNTVVRVLKDAGEF 270
Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 42 LAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE 101
L+ + + +K Y +R E+ PD+ +R +L +L V E + V ++KR
Sbjct: 422 LSLYADGGNIDAALKCYRKIR-EVGLFPDVVTHRAVLHVLCERNMVGEVETVIAEMKRSR 480
Query: 102 VLFDQHTFGDIIRAFSDSGLPSEA 125
V D+H+ +I+ + + GL +A
Sbjct: 481 VRVDEHSIPVVIKMYVNEGLLDKA 504
>gi|297601813|ref|NP_001051548.2| Os03g0795400 [Oryza sativa Japonica Group]
gi|222625958|gb|EEE60090.1| hypothetical protein OsJ_12941 [Oryza sativa Japonica Group]
gi|255674962|dbj|BAF13462.2| Os03g0795400 [Oryza sativa Japonica Group]
Length = 728
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 14/165 (8%)
Query: 8 VAKELKRLQSHPVRFDRFIKSHV---SRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKE 64
V E L+ V+FD+ K SR K L++ L R D+ D K
Sbjct: 213 VLCEAGHLELALVQFDKMSKKRCIPNSRTFKI-LITALCSHGRADES------ADAFDKM 265
Query: 65 IWYR--PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
+ R PD F +L + + K+ EA+++ + +K ++ DQH + +IR ++ L
Sbjct: 266 LQLRCIPDSSFCVQVLPLFCKFNKLKEARKLHQMMKEYKLQSDQHLYSALIRCLCENQLL 325
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLE 167
+A+ N+M +S + F I+ +F + V +FLE
Sbjct: 326 DDAVTTVNDMIASGHALMRSTFVNIVDCYCTLGQFHKAV--NFLE 368
>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
lyrata]
gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
lyrata]
Length = 504
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 64/125 (51%), Gaps = 5/125 (4%)
Query: 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWE 95
+ L++ L + R D+ +++ ++ +Y P+ Y ++ ++K+V + +++
Sbjct: 296 TALINGLCTYGRLDEA---RQMFYLMESNGYY-PNEVTYTTLIHGFCKSKRVEDGTKIFY 351
Query: 96 DLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYP 155
++ ++ ++ + T+ +I+ + G P A ++N+M S A P + V+L GL Y
Sbjct: 352 EMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLC-YN 410
Query: 156 EFREK 160
+ EK
Sbjct: 411 GYVEK 415
>gi|242047208|ref|XP_002461350.1| hypothetical protein SORBIDRAFT_02g001400 [Sorghum bicolor]
gi|241924727|gb|EER97871.1| hypothetical protein SORBIDRAFT_02g001400 [Sorghum bicolor]
Length = 560
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/99 (19%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
++++++++++ +Y P + ++++L R+ + A Q+++++ ++ + +I
Sbjct: 190 LQVFEMLKEQPFYHPKEGTFMKLIVLLGRSGQPARAHQLFDEMLQQGCQPTPGLYTALIG 249
Query: 115 AFSDSGLPSEAMFIYNEMRSSP-ATPISLPFRVILKGLI 152
A+ SGL +A+ + N+M+ SP P + I+K +
Sbjct: 250 AYCRSGLLDDALQLLNDMKGSPLCQPDVYTYSTIIKACV 288
>gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g07290, mitochondrial; Flags: Precursor
gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana]
gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 880
Score = 41.6 bits (96), Expect = 0.18, Method: Composition-based stats.
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 17/161 (10%)
Query: 30 VSRLLKSDLV-------SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLA 82
+S++LK V S+L F R + +K++DV+ KE+ P+ Y ++ L
Sbjct: 218 MSKILKIGFVLDSHIGTSLLLGFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLC 277
Query: 83 RNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISL 142
++ EA + + + + T+ +I+A D GL +A +++EM P
Sbjct: 278 EVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVH 337
Query: 143 PFRVILKGLIPYPEF-------REKVKDDFLELFPDMIVYD 176
+ V++ GL + R+ VKD +FP +I Y+
Sbjct: 338 TYTVLIDGLCRDGKIEEANGVCRKMVKD---RIFPSVITYN 375
>gi|387192495|gb|AFJ68660.1| hypothetical protein NGATSA_2025410, partial [Nannochloropsis
gaditana CCMP526]
Length = 527
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 32 RLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAK 91
RL S L+S L + +Q+ + L+ +R + +P++ Y + M A+ +A
Sbjct: 226 RLTYSYLLSCLVDC---NQLEVAQSLWREMRDKGHVKPNLELYSLAVDMFAKAGDTTQAV 282
Query: 92 QVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPA 137
++++++R V + T+ ++ AF +G P A+ I +EMR P
Sbjct: 283 TIFKEMRRNRVQPNLVTYTALMEAFVRAGYPMAALSISDEMRRKPG 328
>gi|356532363|ref|XP_003534743.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 693
Score = 41.6 bits (96), Expect = 0.18, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 54 CMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113
C+ +Y+ + K + +P+M Y +L + R K+ ++AK ++E++ + T ++
Sbjct: 281 CLSVYNDM-KVLGAKPNMVTYNALLYAMGRAKRALDAKAIYEEMISNGFSPNWPTHAALL 339
Query: 114 RAFSDSGLPSEAMFIYNEMRSS 135
+A+ + P +A+ +Y EM+ +
Sbjct: 340 QAYCKARFPEDALGVYKEMKGN 361
>gi|255661030|gb|ACU25684.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 376
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 39/90 (43%)
Query: 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIY 129
D F Y M+ L + K+ EA V + + + H + +I F +A+ ++
Sbjct: 128 DAFAYSAMINGLCKEAKLDEAVSVLNGMIKNGGTPNAHVYNTLINGFMGVSKFDDAIRVF 187
Query: 130 NEMRSSPATPISLPFRVILKGLIPYPEFRE 159
EM S+ +P + + ++ GL F E
Sbjct: 188 REMGSTNCSPTVVTYNTLINGLCKGERFAE 217
>gi|15232008|ref|NP_187518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207466|sp|Q9SS81.1|PP221_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09060
gi|5923671|gb|AAD56322.1|AC009326_9 hypothetical protein [Arabidopsis thaliana]
gi|332641194|gb|AEE74715.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 41.6 bits (96), Expect = 0.18, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 56/108 (51%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
M+L+D + ++ P++ + M+ L++ +V + ++WE +K+ E D +T+ +I
Sbjct: 239 MELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIH 298
Query: 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
D+G +A ++NE+ A+ + + +L G + +E ++
Sbjct: 299 GLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLE 346
>gi|422292736|gb|EKU20038.1| hypothetical protein NGA_2025410 [Nannochloropsis gaditana CCMP526]
gi|422295019|gb|EKU22318.1| hypothetical protein NGA_2025420 [Nannochloropsis gaditana CCMP526]
Length = 527
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 32 RLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAK 91
RL S L+S L + +Q+ + L+ +R + +P++ Y + M A+ +A
Sbjct: 226 RLTYSYLLSCLVDC---NQLEVAQSLWREMRDKGHVKPNLELYSLAVDMFAKAGDTTQAV 282
Query: 92 QVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPA 137
++++++R V + T+ ++ AF +G P A+ I +EMR P
Sbjct: 283 TIFKEMRRNRVQPNLVTYTALMEAFVRAGYPMAALSISDEMRRKPG 328
>gi|255561341|ref|XP_002521681.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539072|gb|EEF40668.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 458
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
M+L ++R E ++PD F Y ++ K +A QV++ +K E + D T+ +I
Sbjct: 245 MRLLGILR-ECGFKPDCFVYNTIMKGYCMLSKGSDAIQVFKKMKEEGIEPDLITYNTLIF 303
Query: 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
S G SEA M S P ++ + ++ GL
Sbjct: 304 GLSKGGRVSEAKRYLKIMVESGHFPDAVTYTSLMNGLC 341
>gi|224055765|ref|XP_002298642.1| predicted protein [Populus trichocarpa]
gi|222845900|gb|EEE83447.1| predicted protein [Populus trichocarpa]
Length = 567
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
Query: 52 FLCM-----KLYDVVR--KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF 104
FLCM + Y+V++ ++ PD+ Y ++ +L R + AK++W+++
Sbjct: 407 FLCMGGRVREAYEVLQEMRKKGLDPDISMYNSLIEVLCREDLLRPAKRLWDEMFVIGCGG 466
Query: 105 DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKV 161
+ T+ +I FS+ G EA ++N M TP + R +L+ L F V
Sbjct: 467 NLKTYNILIGKFSEIGQIEEATRLFNHMLEKGVTPDATTHRFLLEALCQETMFETAV 523
>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 625
Score = 41.6 bits (96), Expect = 0.19, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 6/112 (5%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+F Y ++ + + EA V + ++RE + D T+ +I F G EAM +
Sbjct: 233 PDLFTYNTLISLYCKKGMHYEALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRL 292
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVK-DDFLE---LFPDMIVYD 176
+ E+R ATP + + ++ G + + ++ + +E L+P ++ Y+
Sbjct: 293 FKEIRD--ATPNHVTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYN 342
>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 539
Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 58 YDVVRKEI--WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
Y+VV I ++PD+ Y ++ + V EAKQV++ + L + ++ +I
Sbjct: 301 YNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCTLING 360
Query: 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+ + EAM + EM + P ++ + +L GL
Sbjct: 361 YCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGL 396
>gi|125580966|gb|EAZ21897.1| hypothetical protein OsJ_05550 [Oryza sativa Japonica Group]
Length = 595
Score = 41.6 bits (96), Expect = 0.19, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 59/119 (49%)
Query: 34 LKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQV 93
L DLV+V +F+ + L + + + + +RPD+ Y ++ + +++ +A+ +
Sbjct: 138 LFDDLVNVAVQFRMNKKWDLIIPVCEWILYRSSFRPDIICYNLLIESYGKKRQLNKAESI 197
Query: 94 WEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
+ L + + + T+ ++RA+ ++G A + +EMR P + + L GL+
Sbjct: 198 YMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLL 256
Score = 36.2 bits (82), Expect = 6.7, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 45 FQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF 104
+ + Q MK+++ + K I +P++ Y ++ AR +A++V+E++++
Sbjct: 290 YGKAKQPMSSMKVFNEM-KSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEP 348
Query: 105 DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
D + + ++ A+S +GLP A I++ M+ P + +++
Sbjct: 349 DVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILV 392
>gi|168061839|ref|XP_001782893.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665615|gb|EDQ52293.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 713
Score = 41.2 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
Y+ D+ FY +L M + +A ++ ED+K + T+ +I AF EA
Sbjct: 309 YKSDLVFYNTLLFMFGKGGHYADAWKILEDMKAAGFMPTSETYNSLILAFGRGSQWQEAE 368
Query: 127 FIYNEMRSSPATPISLPFRVILK-----GLIPYPE 156
M+++ P++ F +L+ G IP E
Sbjct: 369 NTLERMKANGVKPVAQSFSFLLEAYSLSGQIPKGE 403
>gi|115438490|ref|NP_001043552.1| Os01g0611900 [Oryza sativa Japonica Group]
gi|21104680|dbj|BAB93270.1| fertility restorer homologue-like [Oryza sativa Japonica Group]
gi|113533083|dbj|BAF05466.1| Os01g0611900 [Oryza sativa Japonica Group]
gi|125571150|gb|EAZ12665.1| hypothetical protein OsJ_02580 [Oryza sativa Japonica Group]
gi|215767882|dbj|BAH00111.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 800
Score = 41.2 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 42/89 (47%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD F Y ++ L + +K+ EA +WE + V T+ ++ + +G EA+ +
Sbjct: 384 PDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKL 443
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEF 157
Y EM TP + + ++KG I F
Sbjct: 444 YTEMPGKGFTPNVVTYTTLMKGHINKAAF 472
Score = 38.5 bits (88), Expect = 1.4, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 85 KKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPF 144
++V +A ++E+ R+ ++ T+ +IR ++ G+P +A + +MR P + F
Sbjct: 296 REVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEF 355
Query: 145 RVILKGLIPYPEFREKVKDDFLELFPDM 172
+++KGL+ +K+ D + LF +M
Sbjct: 356 NMVIKGLL-----NDKLWKDAVSLFKEM 378
>gi|242037185|ref|XP_002465987.1| hypothetical protein SORBIDRAFT_01g049600 [Sorghum bicolor]
gi|241919841|gb|EER92985.1| hypothetical protein SORBIDRAFT_01g049600 [Sorghum bicolor]
Length = 480
Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
+++++++RK+ WY P Y +LMML + ++ A +++ + E + + ++
Sbjct: 110 LEIFELLRKQHWYEPRSQTYARLLMMLGKCRQPGPAAALFKAMLSERLRPTADVYTALVG 169
Query: 115 AFSDSGLPSEAMFIYNEMRSSP-ATPISLPFRVILK 149
A+ SGL EA+ +M+ + P F V++
Sbjct: 170 AYGYSGLLDEALAAVEQMKGAADCKPDGYTFSVLIN 205
>gi|218188645|gb|EEC71072.1| hypothetical protein OsI_02831 [Oryza sativa Indica Group]
Length = 800
Score = 41.2 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 42/89 (47%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD F Y ++ L + +K+ EA +WE + V T+ ++ + +G EA+ +
Sbjct: 384 PDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKL 443
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEF 157
Y EM TP + + ++KG I F
Sbjct: 444 YTEMPGKGFTPNVVTYTTLMKGHINKAAF 472
Score = 38.5 bits (88), Expect = 1.4, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 85 KKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPF 144
++V +A ++E+ R+ ++ T+ +IR ++ G+P +A + +MR P + F
Sbjct: 296 REVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEF 355
Query: 145 RVILKGLIPYPEFREKVKDDFLELFPDM 172
+++KGL+ +K+ D + LF +M
Sbjct: 356 NMVIKGLL-----NDKLWKDAVSLFKEM 378
>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 580
Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 70/149 (46%), Gaps = 10/149 (6%)
Query: 38 LVSVLAEFQRQD---QVFLCMKLYDVVRKEI---WYRPDMFFYRDMLMMLARNKKVVEAK 91
+V L + R+D Q+F MK ++ E+ +PDM + ++ L + KV+EAK
Sbjct: 221 IVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAK 280
Query: 92 QVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
++ + ++ D T+ +I F G + A ++ M S P + + V++ G
Sbjct: 281 KLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGY 340
Query: 152 IPYPEFREKVK--DDFLELF--PDMIVYD 176
+ E +K ++ L + P++I YD
Sbjct: 341 SKTLKVEEAMKLYNEMLLVGKRPNVITYD 369
>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
Length = 573
Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD Y +L R ++ EAKQ+++++ + L D+ T+ ++R F ++ EA F+
Sbjct: 287 PDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFL 346
Query: 129 YNEMRSSPAT-PISLPFRVILKG 150
M+++ P + + +++ G
Sbjct: 347 LENMKTAAGIDPDVVTYSIVVAG 369
>gi|221503954|gb|EEE29631.1| PPR repeat-containing protein, putative [Toxoplasma gondii VEG]
Length = 1945
Score = 41.2 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 42 LAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE- 100
L R +V C ++ ++ +P+ Y M L N +VVEA +++E++KRE
Sbjct: 1025 LRHLGRTGKVKACWTVWSKLKNSRGLQPNAVAYGCMYDALVSNGRVVEALELFEEMKREG 1084
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
+V + + II+ F+ S A+ +Y EM+ + ++ F I+
Sbjct: 1085 QVPPNTIMYSTIIKGFAQSKQLDRALKMYAEMQQNGVAINTVTFNSIV 1132
Score = 40.4 bits (93), Expect = 0.34, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 56/112 (50%)
Query: 50 QVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTF 109
+V ++L++ +++E P+ Y ++ A++K++ A +++ ++++ V + TF
Sbjct: 1069 RVVEALELFEEMKREGQVPPNTIMYSTIIKGFAQSKQLDRALKMYAEMQQNGVAINTVTF 1128
Query: 110 GDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKV 161
I+ A + G +A + +M S P + F I+KG + E + +
Sbjct: 1129 NSIVDACARVGAMDKAAMLLEDMLSQGIKPDLITFSTIIKGYCVHGEMNKAL 1180
>gi|221483021|gb|EEE21345.1| PPR repeat-containing protein, putative [Toxoplasma gondii GT1]
Length = 1945
Score = 41.2 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 42 LAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE- 100
L R +V C ++ ++ +P+ Y M L N +VVEA +++E++KRE
Sbjct: 1025 LRHLGRTGKVKACWTVWSKLKNSRGLQPNAVAYGCMYDALVSNGRVVEALELFEEMKREG 1084
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
+V + + II+ F+ S A+ +Y EM+ + ++ F I+
Sbjct: 1085 QVPPNTIMYSTIIKGFAQSKQLDRALKMYAEMQQNGVAINTVTFNSIV 1132
Score = 40.4 bits (93), Expect = 0.34, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 56/112 (50%)
Query: 50 QVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTF 109
+V ++L++ +++E P+ Y ++ A++K++ A +++ ++++ V + TF
Sbjct: 1069 RVVEALELFEEMKREGQVPPNTIMYSTIIKGFAQSKQLDRALKMYAEMQQNGVAINTVTF 1128
Query: 110 GDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKV 161
I+ A + G +A + +M S P + F I+KG + E + +
Sbjct: 1129 NSIVDACARVGAMDKAAMLLEDMLSQGIKPDLITFSTIIKGYCVHGEMNKAL 1180
>gi|237840063|ref|XP_002369329.1| PPR repeat-containing protein [Toxoplasma gondii ME49]
gi|211966993|gb|EEB02189.1| PPR repeat-containing protein [Toxoplasma gondii ME49]
Length = 1945
Score = 41.2 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 42 LAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE- 100
L R +V C ++ ++ +P+ Y M L N +VVEA +++E++KRE
Sbjct: 1025 LRHLGRTGKVKACWTVWSKLKNSRGLQPNAVAYGCMYDALVSNGRVVEALELFEEMKREG 1084
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
+V + + II+ F+ S A+ +Y EM+ + ++ F I+
Sbjct: 1085 QVPPNTIMYSTIIKGFAQSKQLDRALKMYAEMQQNGVAINTVTFNSIV 1132
Score = 40.4 bits (93), Expect = 0.34, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 56/112 (50%)
Query: 50 QVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTF 109
+V ++L++ +++E P+ Y ++ A++K++ A +++ ++++ V + TF
Sbjct: 1069 RVVEALELFEEMKREGQVPPNTIMYSTIIKGFAQSKQLDRALKMYAEMQQNGVAINTVTF 1128
Query: 110 GDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKV 161
I+ A + G +A + +M S P + F I+KG + E + +
Sbjct: 1129 NSIVDACARVGAMDKAAMLLEDMLSQGIKPDLITFSTIIKGYCVHGEMNKAL 1180
>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
and contains a RepB PF|01051 protein and multiple PPR
PF|01535 repeats [Arabidopsis thaliana]
Length = 613
Score = 41.2 bits (95), Expect = 0.20, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 77/163 (47%), Gaps = 16/163 (9%)
Query: 24 RFIKSHVSRLLKSDLVSVLA---EFQRQDQVFLCMKLYD-VVRKEIWYRPDMFFYRDMLM 79
R + + R + ++V+ A F ++ ++ KLYD ++++ I PD+F Y ++
Sbjct: 295 RLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI--DPDIFTYSSLIN 352
Query: 80 MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
+ ++ EAK ++E + ++ + T+ +I+ F + E M ++ EM
Sbjct: 353 GFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG 412
Query: 140 ISLPFRVILKGLIPYPE-------FREKVKDDFLELFPDMIVY 175
++ + +++GL + F++ V D + PD+I Y
Sbjct: 413 NTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG---VPPDIITY 452
>gi|357142290|ref|XP_003572522.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 669
Score = 41.2 bits (95), Expect = 0.20, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 15/134 (11%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD+F Y +L L R + +A ++ ++ R++ ++ TF +I + G A+
Sbjct: 513 KPDIFSYNAVLKGLCRAARWEDAGELIANMARKDCPPNEITFNILINSLCQKGFADRAIE 572
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK-DDFLELF------PDMIVYDPP-E 179
++ +M +TP + ++ G F E+ + DD L L PD I Y+ +
Sbjct: 573 VFKQMPEYGSTPDIFTYNALING------FSEQGRLDDALNLLSTMSCKPDAISYNSTLK 626
Query: 180 DLFEDQEWRRESDE 193
L + W +E++E
Sbjct: 627 GLCRAERW-KEAEE 639
>gi|356562139|ref|XP_003549331.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 689
Score = 41.2 bits (95), Expect = 0.20, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 54 CMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113
C+ +Y + K + + +M Y +L + R K+ +AK ++ ++ L + T+ ++
Sbjct: 290 CLNVYQEM-KALGVKSNMVIYNTLLDAMGRAKRPWQAKSIYTEMTNNGFLPNWATYASLL 348
Query: 114 RAFSDSGLPSEAMFIYNEMR 133
RA+ +A+F+Y EM+
Sbjct: 349 RAYGRGRYSEDALFVYKEMK 368
>gi|255563546|ref|XP_002522775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538013|gb|EEF39626.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1071
Score = 41.2 bits (95), Expect = 0.20, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 41/86 (47%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
+ P F Y +L L R K EAK++ + L D T+ I+ SG+ ++A+
Sbjct: 549 HHPSHFTYGGLLKALCRAGKFKEAKRLLDKLHYIPSAVDTVTYNTILVETFKSGMLTDAV 608
Query: 127 FIYNEMRSSPATPISLPFRVILKGLI 152
+++EM P S + +I GLI
Sbjct: 609 ALFDEMVQRNVLPDSYTYAIIFAGLI 634
>gi|108711539|gb|ABF99334.1| expressed protein [Oryza sativa Japonica Group]
Length = 744
Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 14/165 (8%)
Query: 8 VAKELKRLQSHPVRFDRFIKSHV---SRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKE 64
V E L+ V+FD+ K SR K L++ L R D+ D K
Sbjct: 213 VLCEAGHLELALVQFDKMSKKRCIPNSRTFKI-LITALCSHGRADES------ADAFDKM 265
Query: 65 IWYR--PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
+ R PD F +L + + K+ EA+++ + +K ++ DQH + +IR ++ L
Sbjct: 266 LQLRCIPDSSFCVQVLPLFCKFNKLKEARKLHQMMKEYKLQSDQHLYSALIRCLCENQLL 325
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLE 167
+A+ N+M +S + F I+ +F + V +FLE
Sbjct: 326 DDAVTTVNDMIASGHALMRSTFVNIVDCYCTLGQFHKAV--NFLE 368
>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
Length = 700
Score = 41.2 bits (95), Expect = 0.20, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 57 LYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116
L D+ +K I + D+ + ++ +N K+ EA + +D+ ++V + + II A+
Sbjct: 462 LSDMQQKGI--KSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAY 519
Query: 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+SG +A+ + +M++S + + + ++LKGL
Sbjct: 520 IESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGL 554
>gi|50400026|gb|AAT76414.1| putative PPR repeat containing protein [Oryza sativa Japonica
Group]
Length = 755
Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 14/165 (8%)
Query: 8 VAKELKRLQSHPVRFDRFIKSHV---SRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKE 64
V E L+ V+FD+ K SR K L++ L R D+ D K
Sbjct: 213 VLCEAGHLELALVQFDKMSKKRCIPNSRTFKI-LITALCSHGRADES------ADAFDKM 265
Query: 65 IWYR--PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
+ R PD F +L + + K+ EA+++ + +K ++ DQH + +IR ++ L
Sbjct: 266 LQLRCIPDSSFCVQVLPLFCKFNKLKEARKLHQMMKEYKLQSDQHLYSALIRCLCENQLL 325
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLE 167
+A+ N+M +S + F I+ +F + V +FLE
Sbjct: 326 DDAVTTVNDMIASGHALMRSTFVNIVDCYCTLGQFHKAV--NFLE 368
>gi|413951888|gb|AFW84537.1| hypothetical protein ZEAMMB73_783984 [Zea mays]
Length = 238
Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 51/116 (43%), Gaps = 8/116 (6%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
++PD+ Y ++ L R KK+ A +W ++ + D +I +G ++A
Sbjct: 76 FKPDIRTYGSLIRGLCRVKKIDAALCIWNEILDAGIQVDVIVHNILIHGLCSAGKVNDAF 135
Query: 127 FIYNEMRSSPATPISLPFRVILKG------LIPYPEFREKVKDDFLELFPDMIVYD 176
IY EM+ +P + + ++ G + + D+ L+ PD++ Y+
Sbjct: 136 CIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDTAASLWAAILDNGLK--PDIVTYN 189
>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
Length = 426
Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 39 VSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLK 98
+V+ F ++ + MKLY+ + + PD+F Y ++ L + +V EAKQ+ + +
Sbjct: 189 TAVIDVFVKEGKFSEAMKLYEEMTRRC-VDPDVFTYNSLINGLCMHGRVDEAKQMLDLMV 247
Query: 99 REEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG 150
+ L D T+ +I F S E ++ EM ++ + I++G
Sbjct: 248 TKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQG 299
Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+ Y ++ ++K+V E +++ ++ + ++ D T+ II+ + +G P A I
Sbjct: 253 PDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEI 312
Query: 129 YNEMRSSPATPISLPFRVILKGLI 152
++ M S P + ++L GL
Sbjct: 313 FSRMDSRPNIR---TYSILLYGLC 333
>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
Length = 796
Score = 41.2 bits (95), Expect = 0.21, Method: Composition-based stats.
Identities = 45/199 (22%), Positives = 81/199 (40%), Gaps = 26/199 (13%)
Query: 1 MSKESLMVAKELKRLQSHP--VRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLY 58
+ + SL V + L L+ HP F+ + +H S+ +D ++ L+ Q
Sbjct: 188 LPQASLDVFRSLIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQ------------ 235
Query: 59 DVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118
PD Y +L R + EA+ + +KR+ + Q T+ ++ AF+
Sbjct: 236 -----GFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFAR 290
Query: 119 SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE--KVKDDFLEL---FPDMI 173
G +A + M + P + V+ GL + E ++KD+ L PD++
Sbjct: 291 LGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVV 350
Query: 174 VYDPPEDLFEDQEWRRESD 192
Y+ D +WR SD
Sbjct: 351 TYNTLVDAC--FKWRCSSD 367
>gi|46805412|dbj|BAD16914.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|215704291|dbj|BAG93131.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 527
Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
S++ + R QV L +++ +RK + + M++ A N + +A + +E ++R
Sbjct: 276 SLIDMYARCGQVELARQVFSGMRKRT-----VVSWNSMIVGFAANGRCADAVEHFEAMRR 330
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS 134
E D TF ++ A S GL E + Y+ MR+
Sbjct: 331 EGFKPDAVTFTGVLTACSHGGLTDEGLRYYDLMRA 365
>gi|302816541|ref|XP_002989949.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
gi|300142260|gb|EFJ08962.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
Length = 447
Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
+ P+ Y ++ + ++ +A V+ D+K +L + T ++ + G S A+
Sbjct: 21 FAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSAL 80
Query: 127 FIYNEMRSSPATPISLPFRVILKGLIPYP---EFREKVKDDFLELFPDMIVY 175
++ EM++ P P S ++L+G EF +++K +E PD+ Y
Sbjct: 81 KLFREMQAGPFLPTSASHNILLRGFFMAGRAIEFFKEMKASGVE--PDLESY 130
>gi|356528730|ref|XP_003532952.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g73710-like [Glycine max]
Length = 963
Score = 41.2 bits (95), Expect = 0.22, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 47/102 (46%)
Query: 56 KLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
++++ + + WY P+ Y +L L + ++ + + W D+ + VL +T+ ++
Sbjct: 90 RIFEWFKSQTWYTPNAIHYNVVLRALGKAQQWDQLRLCWLDMAKNGVLPTNNTYSMLVDV 149
Query: 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEF 157
+ +GL EA+ MR P + ++K L +F
Sbjct: 150 YGKAGLVQEALLWIRHMRVRGFFPDEVTMCTVVKVLKDVGDF 191
>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 485
Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 39 VSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLK 98
+V+ F ++ + MKLY+ + + PD+F Y ++ L + +V EAKQ+ + +
Sbjct: 248 TAVIDVFVKEGKFSEAMKLYEEMTRRC-VDPDVFTYNSLINGLCMHGRVDEAKQMLDLMV 306
Query: 99 REEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG 150
+ L D T+ +I F S E ++ EM ++ + I++G
Sbjct: 307 TKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQG 358
Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+ Y ++ ++K+V E +++ ++ + ++ D T+ II+ + +G P A I
Sbjct: 312 PDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEI 371
Query: 129 YNEMRSSPATPISLPFRVILKGLI 152
++ M S P + ++L GL
Sbjct: 372 FSRMDSRPNIR---TYSILLYGLC 392
>gi|255661194|gb|ACU25766.1| pentatricopeptide repeat-containing protein [Neosparton
ephedroides]
Length = 426
Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 6/125 (4%)
Query: 31 SRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEI------WYRPDMFFYRDMLMMLARN 84
SRL +S L + VF KL+ R I PD Y +L M N
Sbjct: 68 SRLKRSGFAPDLVAYNSMINVFXKAKLFREARSLINEMRTAGVMPDTVSYTTLLTMHVEN 127
Query: 85 KKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPF 144
K+ +EA V+ +++ + L D T +I + G+ EA ++ MR P + +
Sbjct: 128 KRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKIGIEPNVVSY 187
Query: 145 RVILK 149
+L+
Sbjct: 188 NTLLR 192
>gi|452825793|gb|EME32788.1| mitochondrial protein translocase, MPT family [Galdieria
sulphuraria]
Length = 821
Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
+++ F + QV ++YD +RK + +PD + ++ + K + A + D+
Sbjct: 498 ALIDGFGKLRQVDKAFEIYDRMRK-LQIQPDRITFNALISASGKAKNSIRALEAMGDMTE 556
Query: 100 EEVLF-DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG 150
L D+H++ +I A SG ++A ++ EMR+ P ++ F ++ G
Sbjct: 557 IYGLTPDRHSYNALIDACGKSGDFTKAYEVFEEMRTKGIRPCTVTFNALIYG 608
>gi|147776740|emb|CAN72416.1| hypothetical protein VITISV_027905 [Vitis vinifera]
Length = 422
Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 40/95 (42%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
PD+ Y +++ R + ++A +V ED+ + ++G ++ D GL EA
Sbjct: 255 NPDIVHYNTVILGFCREGRXLDACKVLEDMPSNGCSPNLMSYGTLVSGLCDQGLYDEAKN 314
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
EM S +P F ++ G + E +
Sbjct: 315 YVEEMLSKGFSPHFSVFHALINGFCNVGKLEEACE 349
>gi|147841962|emb|CAN63129.1| hypothetical protein VITISV_001456 [Vitis vinifera]
Length = 701
Score = 41.2 bits (95), Expect = 0.23, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 54 CMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113
C+ +Y+ + K + +P++ Y +L + R K+ +AK +++++ + T+ ++
Sbjct: 300 CLNVYEEM-KALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQLSWGTYAALL 358
Query: 114 RAFSDSGLPSEAMFIYNEMR 133
RA+ + +A+ +Y EM+
Sbjct: 359 RAYGRARYAEDALIVYKEMK 378
>gi|297743996|emb|CBI36966.3| unnamed protein product [Vitis vinifera]
Length = 730
Score = 41.2 bits (95), Expect = 0.23, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 44 EFQRQDQVFLCMKLYDVVRKEIWYR---PDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100
+F R ++F M L+ E+ YR D+F Y +L + + ++ A Q+ ++ R+
Sbjct: 186 DFNRAAEIFDEMNLF----SEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRK 241
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133
++ + T+ +I ++ +G EA+ ++NEM+
Sbjct: 242 HIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMK 274
>gi|145360025|ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17140
gi|110737729|dbj|BAF00803.1| hypothetical protein [Arabidopsis thaliana]
gi|330251496|gb|AEC06590.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 874
Score = 41.2 bits (95), Expect = 0.23, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 58/126 (46%), Gaps = 1/126 (0%)
Query: 26 IKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEI-WYRPDMFFYRDMLMMLARN 84
+ S + + S L+SV++ F + + + + +VR +P ++ Y +L +
Sbjct: 66 LSSSIQKTKLSSLLSVVSIFAKSNHIDKAFPQFQLVRSRFPENKPSVYLYNLLLESCIKE 125
Query: 85 KKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPF 144
++V +++D+ + +TF +IRA DS A +++EM P F
Sbjct: 126 RRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTF 185
Query: 145 RVILKG 150
++++G
Sbjct: 186 GILVRG 191
>gi|218190151|gb|EEC72578.1| hypothetical protein OsI_06020 [Oryza sativa Indica Group]
Length = 738
Score = 41.2 bits (95), Expect = 0.24, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 59/119 (49%)
Query: 34 LKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQV 93
L DLV+V +F+ + L + + + + +RPD+ Y ++ + +++ +A+ +
Sbjct: 281 LFDDLVNVAVQFRMNKKWDLIIPVCEWILYRSSFRPDIICYNLLIESYGKKRQLNKAESI 340
Query: 94 WEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
+ L + + + T+ ++RA+ ++G A + +EMR P + + L GL+
Sbjct: 341 YMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLL 399
Score = 35.8 bits (81), Expect = 8.5, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 45 FQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF 104
+ + Q MK+++ + K I +P++ Y ++ AR +A++V+E++++
Sbjct: 433 YGKAKQPMSSMKVFNEM-KSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEP 491
Query: 105 DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
D + + ++ A+S +GLP A I++ M+ P + +++
Sbjct: 492 DVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILV 535
>gi|440577310|emb|CCI55317.1| PH01B001I13.13 [Phyllostachys edulis]
Length = 636
Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWE 95
+++S+ + +R M+L ++ K+ P+++ Y +L M R +A+++W+
Sbjct: 435 GNMISMYGKIRRASDA---MRLLALM-KQKGCEPNVWVYNSLLDMHGRLGDSRQAEKIWK 490
Query: 96 DLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPA 137
++ R V D+ ++ II AF+ SG M +Y E R +
Sbjct: 491 EMMRRTVQPDRVSYTAIISAFNRSGELDRCMDLYQEFRETGG 532
>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
Length = 1244
Score = 40.8 bits (94), Expect = 0.25, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 71/141 (50%), Gaps = 7/141 (4%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
S++ F R+++V + L D + EI Y+PD+ Y ++ L + K+V +A +++++R
Sbjct: 263 SLVNGFCRRNRVSDAVSLVDKM-VEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIER 321
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
+ + + T+ ++ +S S+A + ++M TP + + +L + + E
Sbjct: 322 KGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLE 381
Query: 160 KVKDDFLELF-----PDMIVY 175
K+ F E+ PD++ Y
Sbjct: 382 -AKELFEEMVRMSIDPDIVTY 401
Score = 39.7 bits (91), Expect = 0.64, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 62/137 (45%), Gaps = 9/137 (6%)
Query: 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWE 95
S L+S L + R L D++ ++I PD+F + ++ + K+VEA+++++
Sbjct: 909 SSLISCLCNYGRWSDA--SRLLSDMIERKI--NPDVFTFSALIDAFVKEGKLVEAEKLYD 964
Query: 96 DLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYP 155
++ + + T+ +I F EA ++ M S P + + ++KG Y
Sbjct: 965 EMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYK 1024
Query: 156 EFREKVKDDFLELFPDM 172
E +E+F +M
Sbjct: 1025 RVEEG-----MEVFREM 1036
Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
RP++ Y ++ L + +A ++ D+ ++ D TF +I AF G EA
Sbjct: 902 RPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEK 961
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFRE-KVKDDFL---ELFPDMIVYD 176
+Y+EM P + + ++ G + E K +F+ FPD++ Y+
Sbjct: 962 LYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYN 1014
Score = 36.6 bits (83), Expect = 5.1, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 42/83 (50%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD++ Y +L L N ++ +A ++ED+++ E+ D T+ +IR +G EA +
Sbjct: 501 PDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSL 560
Query: 129 YNEMRSSPATPISLPFRVILKGL 151
+ + P + + ++ GL
Sbjct: 561 FCSLSLKGLKPDIVTYTTMMSGL 583
>gi|125541284|gb|EAY87679.1| hypothetical protein OsI_09093 [Oryza sativa Indica Group]
Length = 493
Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
S++ + R QV L +++ +RK + + M++ A N + +A + +E ++R
Sbjct: 242 SLIDMYARCGQVELARQVFSGMRKRT-----VVSWNSMIVGFAANGRCADAVEHFEAMRR 296
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS 134
E D TF ++ A S GL E + Y+ MR+
Sbjct: 297 EGFKPDAVTFTGVLTACSHGGLTDEGLRYYDLMRA 331
>gi|225461712|ref|XP_002283237.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Vitis vinifera]
Length = 464
Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 13/155 (8%)
Query: 6 LMVAKELKR-LQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKE 64
L +A ELK+ + ++ +R D I S L++ L + R+D+VF+ ++ +E
Sbjct: 235 LSLAFELKKEMVANKLRLDSGIYST--------LIAALFKVGRKDEVFVVLEEM----RE 282
Query: 65 IWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSE 124
+PD Y M+ K A V E++ + D ++ II G E
Sbjct: 283 NGCKPDTVTYNAMISGFCNEKDFEAAYGVLEEMVAKGCKPDVISYNVIISGLCKEGKWRE 342
Query: 125 AMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
A ++ +M TP +R++ GL +F E
Sbjct: 343 ANDLFEDMPRRGCTPDVGSYRILFDGLCEGMQFNE 377
>gi|147845950|emb|CAN82028.1| hypothetical protein VITISV_000613 [Vitis vinifera]
Length = 790
Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+F Y ++ R +V EA +++E+L+ D +F +I +G EA
Sbjct: 534 PDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMR 593
Query: 129 YNEMRSSPATPISLPFRVILK--GLIPYPEFREKVKDDFLE--LFPDMIVYDPPEDLFE 183
+ EMR +P + + +++ G E ++ D+ L P+++ Y+ D E
Sbjct: 594 FKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLE 652
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 49 DQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHT 108
DQV++ K D+ RK PD + Y M+ M + K E+ +++++ + +
Sbjct: 309 DQVYMVFK--DMKRKHC--EPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIA 364
Query: 109 FGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIP 153
+ +I+A +++ + + +F++++M + P F VIL L+
Sbjct: 365 YNTMIQALANNRMVDKTIFLFSKMVENNCRPNGFTFSVILNVLVA 409
>gi|356522073|ref|XP_003529674.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 685
Score = 40.8 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 54 CMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113
C+ +Y + K + +P+M Y +L + R K+ +AK ++ ++ + T+ ++
Sbjct: 286 CLNVYQEM-KVLGVKPNMVIYNTLLDAMGRAKRPWQAKSIYTEMTNNGFSPNWVTYASLL 344
Query: 114 RAFSDSGLPSEAMFIYNEMR 133
RA+ +A+F+Y EM+
Sbjct: 345 RAYGRGRYSEDALFVYKEMK 364
>gi|357481229|ref|XP_003610900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512235|gb|AES93858.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1508
Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
PD Y ++ +L + K+ EA +V ++ V HT+ +I A++ G EA
Sbjct: 473 NPDAVTYTVLIDLLGKASKIEEASKVMSEMLDAGVKPTLHTYSALICAYAKVGRRVEAEE 532
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI--VYDPPEDLFE 183
+N MR S L + V+L + + E ++ L+ +MI + P L+E
Sbjct: 533 TFNRMRESGIKADHLAYSVMLDFFLRFNEIKKAAA-----LYQEMIEAGFTPDTGLYE 585
Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 45/100 (45%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
K + PD Y +L ++ + + + E++ + D+ T+ II + G
Sbjct: 398 KSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMGFGKDEMTYNTIIHMYGKHGRH 457
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
EA+ +Y +M+SS P ++ + V++ L + E K
Sbjct: 458 DEALRLYRDMKSSGRNPDAVTYTVLIDLLGKASKIEEASK 497
Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 30/176 (17%)
Query: 32 RLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAK 91
++ KS ++ +L F + +F K+Y+ + K Y P M YR M+ +L R K+V + +
Sbjct: 891 KISKSSILLMLEAFAQAGNLFEVQKVYNGM-KAAGYFPTMHLYRLMIGLLCRFKRVRDVR 949
Query: 92 QVWEDLKREEVLFDQHTFGDIIRAFS----------------DSGL-PSEAMFIYNEMRS 134
+ ++ D F +++ +S D+GL P E YN + +
Sbjct: 950 VMLSEMGEAGFKPDLQIFNSVLKLYSSIEEFQNMGVIYQMIQDAGLAPDEE--TYNTLIT 1007
Query: 135 ------SPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPEDLFED 184
P +SL ++ GL P + + F +YD E+LFE+
Sbjct: 1008 MYCRDHRPEEGLSLMHKMKSLGLEP----KRDTYRSMIAAFSKQQLYDQAEELFEE 1059
>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 40.8 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 32/150 (21%), Positives = 68/150 (45%), Gaps = 7/150 (4%)
Query: 10 KELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP 69
KE H +R RF H+ ++ L++ L + + ++L + + RP
Sbjct: 140 KEALNFHDHVIR-KRF---HLDQVSYGTLINGLC---KSGETRAALQLLRKIEGLLLVRP 192
Query: 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIY 129
D+ Y ++ ++K V++A ++ ++ +++ + TF +I F G EA+ +
Sbjct: 193 DVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLL 252
Query: 130 NEMRSSPATPISLPFRVILKGLIPYPEFRE 159
NEM + P F +++ GL E ++
Sbjct: 253 NEMSLNNVNPNVYTFNILIDGLCKEGEVKK 282
>gi|224139020|ref|XP_002322960.1| predicted protein [Populus trichocarpa]
gi|222867590|gb|EEF04721.1| predicted protein [Populus trichocarpa]
Length = 694
Score = 40.8 bits (94), Expect = 0.27, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 8/105 (7%)
Query: 63 KEIWYR--------PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
KEIW R P++ Y M+ L + + E+ ++WE +K+ E D T+ +I
Sbjct: 239 KEIWERLVKGSCVYPNVVTYNVMINGLCKMGRFDESLEMWERMKKNECEMDLFTYSSLIC 298
Query: 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
D G A+ +Y EM + + +L G + +E
Sbjct: 299 GLCDVGNVDGAVEVYKEMVKRSVVVDVVTYNALLNGFCRAGKIKE 343
Score = 35.8 bits (81), Expect = 8.7, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 2/112 (1%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
++L F R ++ +L+ ++ KE + ++ Y + L N+KV EA VWE L+R
Sbjct: 330 ALLNGFCRAGKIKESFELWVMMGKENCH--NVVSYNIFIRGLFENRKVEEAISVWELLRR 387
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
D T+G +I +G ++A+ I E + + + I+ GL
Sbjct: 388 RGSGADSTTYGVLIHGLCKNGHLNKALKILKEAKDGGDKLDAFAYSSIVDGL 439
>gi|402225926|gb|EJU05986.1| hypothetical protein DACRYDRAFT_19322 [Dacryopinax sp. DJM-731 SS1]
Length = 1516
Score = 40.8 bits (94), Expect = 0.27, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++F Y +++ L++ +K A ++++++K+ V T+G ++ A G AM++
Sbjct: 1135 PNVFLYNNIISKLSKARKAEAALEIFQEMKKHGVRPTSVTYGALVGACCRVGDADTAMYL 1194
Query: 129 YNEMRSSPA-TPISLPFRVILKGLIPYPEFREK 160
++EM + P + PF +++ + RE+
Sbjct: 1195 FSEMSAQANFRPKAPPFNTMIQFFVHTKPDRER 1227
>gi|357112772|ref|XP_003558181.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
chloroplastic-like [Brachypodium distachyon]
Length = 849
Score = 40.8 bits (94), Expect = 0.27, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 17/157 (10%)
Query: 8 VAKELKRLQSHPVRFDRFIKSHVSRL-LKSDLVSV---------LAEFQRQDQVFLCMKL 57
V L +H + ++ + H+ +L + DL S EF +++ MK
Sbjct: 309 VFNSLMNANAHSLSYNLSVYKHMQKLGVSPDLASYNILLKTCCNAREFDSAQEIYEEMK- 367
Query: 58 YDVVRKEI--WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
+KE + D+F Y M+ + A K A + ED++ + T+ +I A
Sbjct: 368 ----KKEQNGLLKLDVFTYSTMMKVFAEAKMWKMASNIKEDMRAVGARLNLVTWSSLINA 423
Query: 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
+++SGL A+ I EM P + F +IL L+
Sbjct: 424 YANSGLVDGAIEILEEMIRDGCQPTAPCFNIILTALV 460
>gi|255661006|gb|ACU25672.1| pentatricopeptide repeat-containing protein [Lantana canescens]
Length = 376
Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/177 (19%), Positives = 72/177 (40%), Gaps = 42/177 (23%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
++L F R ++ C +L++++ +E + + M+ L N+KV EA +WE + +
Sbjct: 30 AMLNGFYRAGRMKDCFELWEMMGRE--GSRSVASFNIMMRGLFDNRKVEEAMSIWELMTK 87
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFI------------------------------- 128
+ D T+G ++ F +G ++++ I
Sbjct: 88 SGFVEDSVTYGILVHGFCKNGYINKSLHILEIAEQKGGVLDAFAYSAMINALCKESKLEK 147
Query: 129 ----YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPEDL 181
N M S P + + ++KGLI + +DD + +F +M D P ++
Sbjct: 148 AVSVLNGMIRSGCKPNTHVYNALIKGLIGASK-----RDDAVRIFREMGTTDCPPNI 199
>gi|357162631|ref|XP_003579471.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Brachypodium distachyon]
Length = 544
Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 46/93 (49%)
Query: 65 IWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSE 124
+ +RP+ Y D++ R ++ +A ++++++ + HT+ I++A+ SG
Sbjct: 158 LGFRPNPIDYTDLIFSFCRAGRLPDALHLFDEMRALKYPLTPHTYAPILKAYCASGDIQA 217
Query: 125 AMFIYNEMRSSPATPISLPFRVILKGLIPYPEF 157
A + + MR S P + + + + GL +F
Sbjct: 218 ADALISSMRLSGCHPDVVIYNIYIHGLCKVGDF 250
>gi|345293243|gb|AEN83113.1| AT5G21222-like protein, partial [Capsella rubella]
gi|345293245|gb|AEN83114.1| AT5G21222-like protein, partial [Capsella rubella]
gi|345293247|gb|AEN83115.1| AT5G21222-like protein, partial [Capsella rubella]
gi|345293249|gb|AEN83116.1| AT5G21222-like protein, partial [Capsella rubella]
gi|345293251|gb|AEN83117.1| AT5G21222-like protein, partial [Capsella rubella]
gi|345293253|gb|AEN83118.1| AT5G21222-like protein, partial [Capsella rubella]
gi|345293255|gb|AEN83119.1| AT5G21222-like protein, partial [Capsella rubella]
gi|345293257|gb|AEN83120.1| AT5G21222-like protein, partial [Capsella rubella]
Length = 160
Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+P + Y ++ L R K + +++ + D F II A S+SG +AM
Sbjct: 1 KPSIITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMK 60
Query: 128 IYNEMRSSPATPISLPFRVILKG 150
I+ +M+ S P + F ++KG
Sbjct: 61 IFEKMKESGCKPTTSTFNTLIKG 83
>gi|297737325|emb|CBI26526.3| unnamed protein product [Vitis vinifera]
Length = 1005
Score = 40.8 bits (94), Expect = 0.28, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 44/86 (51%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD Y ++ ++ K +EA++ ++ E VL F ++ AF+ +G EA +
Sbjct: 853 PDSLTYLALIRAYTQSFKFLEAEETIMSMQNEGVLPSCVHFNQLLSAFAKAGFTEEAERV 912
Query: 129 YNEMRSSPATPISLPFRVILKGLIPY 154
Y+ + S+ +P +R +L+G + Y
Sbjct: 913 YHTLLSAGLSPDVACYRTMLRGYLDY 938
>gi|48716316|dbj|BAD22929.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|48717088|dbj|BAD22861.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
Length = 933
Score = 40.8 bits (94), Expect = 0.28, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
+++A F R QV + D++ KE P++ Y ++ R K V EA ++E + R
Sbjct: 209 TLVAGFCRAGQVDAARGVLDMM-KEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVR 267
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
VL D T ++ G SEA ++ EM A P + + ++ L
Sbjct: 268 NGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSL 319
>gi|222623943|gb|EEE58075.1| hypothetical protein OsJ_08937 [Oryza sativa Japonica Group]
Length = 933
Score = 40.8 bits (94), Expect = 0.28, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
+++A F R QV + D++ KE P++ Y ++ R K V EA ++E + R
Sbjct: 209 TLVAGFCRAGQVDAARGVLDMM-KEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVR 267
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
VL D T ++ G SEA ++ EM A P + + ++ L
Sbjct: 268 NGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSL 319
>gi|218191848|gb|EEC74275.1| hypothetical protein OsI_09511 [Oryza sativa Indica Group]
Length = 933
Score = 40.8 bits (94), Expect = 0.28, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
+++A F R QV + D++ KE P++ Y ++ R K V EA ++E + R
Sbjct: 209 TLVAGFCRAGQVDAARGVLDMM-KEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVR 267
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
VL D T ++ G SEA ++ EM A P + + ++ L
Sbjct: 268 NGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAVPNHVTYCTLIDSL 319
>gi|115449873|ref|NP_001048572.1| Os02g0824000 [Oryza sativa Japonica Group]
gi|113538103|dbj|BAF10486.1| Os02g0824000 [Oryza sativa Japonica Group]
Length = 1013
Score = 40.8 bits (94), Expect = 0.28, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
+++A F R QV + D++ KE P++ Y ++ R K V EA ++E + R
Sbjct: 209 TLVAGFCRAGQVDAARGVLDMM-KEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVR 267
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
VL D T ++ G SEA ++ EM A P + + ++ L
Sbjct: 268 NGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSL 319
>gi|297792331|ref|XP_002864050.1| EMB1006 [Arabidopsis lyrata subsp. lyrata]
gi|297309885|gb|EFH40309.1| EMB1006 [Arabidopsis lyrata subsp. lyrata]
Length = 723
Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 34 LKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQV 93
L + +S L+ QR D + ++Y+ + K I PD M+ + + + AK+V
Sbjct: 275 LYNAAISGLSASQRYDDAW---EVYEAMNK-INVFPDNVTCAIMITTMRKAGR--SAKEV 328
Query: 94 WEDLKR---EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEM 132
WE ++ + V + Q FG ++++F D GL EA+ I EM
Sbjct: 329 WEIFEKMSDKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEM 370
>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
Length = 683
Score = 40.8 bits (94), Expect = 0.28, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++ Y ++ L + + V +A +V + + V+ D T+ I+ F SG P EA+
Sbjct: 121 PNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVF 180
Query: 129 YNEMRSSPATP 139
+MRS P
Sbjct: 181 LKKMRSDGVEP 191
Score = 37.0 bits (84), Expect = 3.6, Method: Composition-based stats.
Identities = 25/112 (22%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
S++ ++ +V KL+D++ + I +PD+ Y ++ K+ EA ++ +
Sbjct: 373 SIIDSHCKEGRVIESEKLFDLMVR-IGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVS 431
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+ D T+ +I + +A+ ++ EM SS +P + + +IL+GL
Sbjct: 432 VGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGL 483
>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 624
Score = 40.8 bits (94), Expect = 0.28, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 43/82 (52%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD + ++ R +KV EAK++ +++K + D ++ +I +S G +A+ +
Sbjct: 495 PDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEV 554
Query: 129 YNEMRSSPATPISLPFRVILKG 150
++EM S P L + +++G
Sbjct: 555 FDEMLSLGFDPTLLTYNALIQG 576
>gi|83744090|gb|ABC42331.1| PPR protein [Oryza sativa Indica Group]
Length = 506
Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 58 YDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117
Y +V++ + +PD+ Y +L A +VE +++ + + ++ D + F +I A +
Sbjct: 327 YSMVKRGL--KPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASA 384
Query: 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
G EAM ++++MR P + + ++ G ++ L LF +M+
Sbjct: 385 KQGKVDEAMLVFSKMRHQGLKPNCVTYNTLINGYCKITRM-----ENALALFQEMV 435
>gi|225454795|ref|XP_002274101.1| PREDICTED: pentatricopeptide repeat-containing protein At5g27270-like
[Vitis vinifera]
Length = 1071
Score = 40.8 bits (94), Expect = 0.28, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 44/86 (51%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD Y ++ ++ K +EA++ ++ E VL F ++ AF+ +G EA +
Sbjct: 919 PDSLTYLALIRAYTQSFKFLEAEETIMSMQNEGVLPSCVHFNQLLSAFAKAGFTEEAERV 978
Query: 129 YNEMRSSPATPISLPFRVILKGLIPY 154
Y+ + S+ +P +R +L+G + Y
Sbjct: 979 YHTLLSAGLSPDVACYRTMLRGYLDY 1004
>gi|224056220|ref|XP_002298762.1| predicted protein [Populus trichocarpa]
gi|222846020|gb|EEE83567.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 40.8 bits (94), Expect = 0.28, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
MK+++ ++ PD+ + +L + +N E V++++KR + ++ T+ +I
Sbjct: 264 MKVFEEIKNSCCV-PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLIS 322
Query: 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
A+S G +AM IY M + TP + +L L
Sbjct: 323 AYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAAL 359
>gi|357119238|ref|XP_003561352.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20740-like [Brachypodium distachyon]
Length = 732
Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 34/66 (51%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
RPD+F Y ++ + R + +VWE++ + V D + ++ ++G+ +A
Sbjct: 302 RPDVFVYTALVKTMMRRGHIEGCIRVWEEMGTDGVEPDAMAYATMVGGLCNAGMVEQAAK 361
Query: 128 IYNEMR 133
++ EMR
Sbjct: 362 LFEEMR 367
>gi|21553611|gb|AAM62704.1| unknown [Arabidopsis thaliana]
Length = 463
Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 12/126 (9%)
Query: 34 LKSDLVS-------VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKK 86
+K DLVS V ++ ++L KL + ++PD F Y ++ K
Sbjct: 226 VKPDLVSFTILIDNVCNSKNLREAMYLVSKLGNA-----GFKPDCFLYNTIMKGFCTLSK 280
Query: 87 VVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRV 146
EA V++ +K E V DQ T+ +I S +G EA M + P + +
Sbjct: 281 GSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTS 340
Query: 147 ILKGLI 152
++ G+
Sbjct: 341 LMNGMC 346
>gi|3695380|gb|AAC62783.1| F11O4.7 [Arabidopsis thaliana]
Length = 508
Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
+ PD+ Y ++ +L K +A VW++LK D T+ +I+ S +AM
Sbjct: 285 FGPDICTYNSLIHVLCLFGKAKDALIVWDELKVSGHEPDNSTYRILIQGCCKSYRMDDAM 344
Query: 127 FIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
IY EM+ + P ++ + +L G + + E +LF M+
Sbjct: 345 RIYGEMQYNGFVPDTIVYNCLLDGTLKARKVTEAC-----QLFEKMV 386
>gi|357115831|ref|XP_003559689.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g55840-like [Brachypodium distachyon]
Length = 968
Score = 40.8 bits (94), Expect = 0.29, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 59 DVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118
D+VRK I +P YR +++ L+++ + A + + + E + D+ +F +I AFS+
Sbjct: 630 DMVRKGI--KPTNVTYRLLILGLSKHGMIEIAVKFLDKMVLEGIYPDRLSFDVLINAFSE 687
Query: 119 SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
S+A+ ++N M+ +P S + ++ GLI
Sbjct: 688 KSRMSDALQLFNCMKWLYMSPSSKTYSAMINGLI 721
>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
Length = 497
Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 40 SVLAEFQRQDQVFLCMKLYDV-VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLK 98
+++ + Q Q+ KL+++ VRK P + Y ++ ++ ++ EAK + ++
Sbjct: 227 ALMDGYCSQSQMDEAQKLFNIMVRK--GCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMS 284
Query: 99 REEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFR 158
+ + D T+ +++ F G P +A + EMRS P + + ++L GL
Sbjct: 285 HKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLD 344
Query: 159 E 159
E
Sbjct: 345 E 345
>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Glycine max]
Length = 511
Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD+ Y ++ L +NK + +A V+ ++ + + D T+ +I F G EA
Sbjct: 194 KPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFS 253
Query: 128 IYNEMRSSPATPISLPFRVILKGL 151
+ NEM+ P F +++ L
Sbjct: 254 LLNEMKLKNINPNVCTFNILIDAL 277
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 47/89 (52%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
KE +PD++ Y +L L ++ ++ +AK++++ L + + H + +I +G
Sbjct: 399 KEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFF 458
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGL 151
EA+ + ++M P ++ F +I++ L
Sbjct: 459 DEALDLKSKMEDKGCMPDAVTFDIIIRAL 487
>gi|356498649|ref|XP_003518162.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g06400, mitochondrial-like [Glycine max]
Length = 1034
Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 74 YRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133
Y + L R KV EA + E++ E+ + DQ TFG I+ G EA+ + M+
Sbjct: 825 YSLFIRALCRAGKVEEALALHEEVGEEKFIIDQLTFGSIVHGLLRKGRLEEALAKVDVMK 884
Query: 134 SSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI--VYDPP 178
+ TP F ++ F+EK + +E F +M+ Y+P
Sbjct: 885 QNGITPTIHVFTSLIVHF-----FKEKQVEKAIETFEEMLHSGYEPT 926
>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
Query: 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123
I PD Y +L+ R EAK+++ ++ R+ V+ D +F ++ FS +
Sbjct: 64 NIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHLD 123
Query: 124 EAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE--KVKDDFLE--LFPDMIVYDP 177
+A+ + +M+ P ++ + V++ G E K++D+ LE D+I Y+
Sbjct: 124 QALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNT 181
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 58/128 (45%), Gaps = 13/128 (10%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD+ Y ++ + ++ +A ++W+ + ++ + T+G +I A+ G SEA
Sbjct: 243 KPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFR 302
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK-DDFL------ELFPDMIVYDPPED 180
+++ M P + ++KG Y + K D+FL + PD I Y+
Sbjct: 303 LWDVMIEKGIKPTLVTCNTVIKG---YCRSGDSSKADEFLGRMIAKGVAPDHISYNT--- 356
Query: 181 LFEDQEWR 188
L D + R
Sbjct: 357 LINDGKRR 364
Score = 36.6 bits (83), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+ + ++ + +RN+ + +A + D+K+ ++ D + ++ + +G EA+ I
Sbjct: 104 PDLVSFSSLMAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKI 163
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
+EM + + IL GL +EK+ D +LF +M+
Sbjct: 164 RDEMLEQGCVLDVIAYNTILNGLC-----KEKMLTDADKLFDEMV 203
>gi|255661192|gb|ACU25765.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
Length = 426
Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 6/125 (4%)
Query: 31 SRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEI------WYRPDMFFYRDMLMMLARN 84
SRL +S L + VF KL+ R I PD Y +L M N
Sbjct: 68 SRLKRSGFAPDLVAYNSMINVFGKAKLFREARSLINEMRTAGVMPDTVSYTTLLTMHVEN 127
Query: 85 KKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPF 144
K+ +EA V+ +++ + L D T +I + G+ EA ++ MR P + +
Sbjct: 128 KRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKIGIEPNVVSY 187
Query: 145 RVILK 149
+L+
Sbjct: 188 NTLLR 192
>gi|326493764|dbj|BAJ85344.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 730
Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 34/66 (51%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
RPD+F Y ++ + R + +VWE++ R+ V D + ++ ++G+ +A
Sbjct: 300 RPDVFVYTTLVKTMVRRGHMEGCIRVWEEMGRDGVEPDSMAYATMVEGLCNAGMVEKAAK 359
Query: 128 IYNEMR 133
++ MR
Sbjct: 360 LFEGMR 365
>gi|297850744|ref|XP_002893253.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
lyrata]
gi|297339095|gb|EFH69512.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
lyrata]
Length = 1147
Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P + + ML + + ++W ++KR + F + T+ +I FS SG EA
Sbjct: 272 PTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKSGKMEEARRF 331
Query: 129 YNEMRSS--PATPISLPFRVILKGLIPYPEFRE--KVKDDFLE--LFPDMIVYD 176
+ +M+ S P TP S F +++G F E V D+ L ++P Y+
Sbjct: 332 HGDMQRSGFPVTPYS--FNPLIEGYCKQGLFDEAWGVTDEMLNAGIYPTTSTYN 383
Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+ Y ++ + +K VEA +++DLK + T+ +I +SG A +
Sbjct: 408 PDVVSYNTLMHGYIKMRKFVEASLLFDDLKAGNINPSIVTYNTLIDGLCESGNLEGAQRL 467
Query: 129 YNEMRSSPATPISLPFRVILKGLI 152
EM S P + + +LKG +
Sbjct: 468 KEEMTSQLIYPDVITYTTLLKGFV 491
>gi|356517665|ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Glycine max]
Length = 564
Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Query: 74 YRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133
Y +ML + + ++ A V + +K V HTF ++R + +GL +EA+ +N M
Sbjct: 181 YNEMLDLAGKLRQFDLAWHVIDLMKSRGVEITVHTFSALVRRYVRAGLAAEAVHAFNRME 240
Query: 134 SSPATPISLPFRVILKGLIPYPEFREKVK--DDFLELF-PDMIVY 175
TP + F +++ L E D F PD++VY
Sbjct: 241 DYGCTPDMVAFSIVISSLCKKRRANEAQSFFDSLKHRFEPDVVVY 285
>gi|18398498|ref|NP_565422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75146596|sp|Q84J71.1|PP161_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17670
gi|28393395|gb|AAO42121.1| unknown protein [Arabidopsis thaliana]
gi|28973597|gb|AAO64123.1| unknown protein [Arabidopsis thaliana]
gi|330251570|gb|AEC06664.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 463
Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 12/126 (9%)
Query: 34 LKSDLVS-------VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKK 86
+K DLVS V ++ ++L KL + ++PD F Y ++ K
Sbjct: 226 VKPDLVSFTILIDNVCNSKNLREAMYLVSKLGNA-----GFKPDCFLYNTIMKGFCTLSK 280
Query: 87 VVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRV 146
EA V++ +K E V DQ T+ +I S +G EA M + P + +
Sbjct: 281 GSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTS 340
Query: 147 ILKGLI 152
++ G+
Sbjct: 341 LMNGMC 346
>gi|242067038|ref|XP_002454808.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
gi|241934639|gb|EES07784.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
Length = 951
Score = 40.8 bits (94), Expect = 0.31, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD Y M+ R K +A ++ +++KR + + T+ ++ ++G+ +A F+
Sbjct: 605 PDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKAKFL 664
Query: 129 YNEMRSSPATPISLPFRVILKG 150
NEM S+ P SL + +L+
Sbjct: 665 LNEMASAGFAPTSLTHQRVLQA 686
>gi|242053623|ref|XP_002455957.1| hypothetical protein SORBIDRAFT_03g027940 [Sorghum bicolor]
gi|241927932|gb|EES01077.1| hypothetical protein SORBIDRAFT_03g027940 [Sorghum bicolor]
Length = 369
Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 56 KLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE---VLFDQHTFGDI 112
+L +R+E RPD+ Y ++ +AR+ +V EA +V+ L+ E V+ D T+ +
Sbjct: 208 ELIRAMREEAGLRPDLVSYNALMRAMARHNRVDEAVEVYRRLEAGEEADVVPDCATYTCV 267
Query: 113 IRAFSDSGLPSEAMFI-YNEMRSSPATPISLPFRVILKGL 151
+ A +G SEA + Y ++ T + RV+++GL
Sbjct: 268 VGALCGAGRWSEAEDVFYAGVKRRKVTDLGT-VRVLVRGL 306
>gi|440792915|gb|ELR14122.1| pentatricopeptide repeat domain/PPR repeatcontaining protein
[Acanthamoeba castellanii str. Neff]
Length = 593
Score = 40.4 bits (93), Expect = 0.32, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 50/96 (52%)
Query: 56 KLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
K+YD +R+ ++ ++ Y ++ R + ++V++ +++EE+ T+ +I A
Sbjct: 385 KIYDELRRGASFQFNVQVYTALINGFGRAGDLARMQKVYDRMRQEEIRPTAQTYTALIEA 444
Query: 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
F+ G P + ++ +++ P S F ++KGL
Sbjct: 445 FTKHGSPYGVVDMWKQVKHQTFLPDSRLFHALVKGL 480
>gi|357509703|ref|XP_003625140.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355500155|gb|AES81358.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 855
Score = 40.4 bits (93), Expect = 0.32, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 66/135 (48%), Gaps = 20/135 (14%)
Query: 5 SLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKE 64
++M+A+ LK + V ++ + ++ +R ++++ + V E ++
Sbjct: 351 NMMLAEGLK---PNIVSYNALLGAYAARGMENEALQVFNEIKQNG--------------- 392
Query: 65 IWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSE 124
+RPD+ Y +L R++K +A+++++ +KR + + ++ +I A+ +GL +
Sbjct: 393 --FRPDVVSYTSLLNAYGRSRKPQKAREIFKMIKRNNLKPNIVSYNALIDAYGSNGLLED 450
Query: 125 AMFIYNEMRSSPATP 139
A+ I EM P
Sbjct: 451 AIEILREMEQDKIHP 465
>gi|357122825|ref|XP_003563115.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Brachypodium distachyon]
Length = 410
Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 43 AEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEV 102
EF+R +F M + R + Y ++ L R +K+ +A Q+ E ++RE +
Sbjct: 122 GEFERARLLFEEMPAKGITRNVVSYNT-------LIAGLCRYRKMKDATQLLELMRREGI 174
Query: 103 LFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG 150
TF ++ + +G S A+ N+MR + P ++ + ++ G
Sbjct: 175 RPSVVTFNLLVDGYGKAGKMSNALHFSNQMRMAGYQPSAVTYNALIAG 222
>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
gi|194702156|gb|ACF85162.1| unknown [Zea mays]
gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
Length = 567
Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 1/122 (0%)
Query: 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100
+L F +Q ++ M+ +++ Y PD+ Y +L L RN +V A ++ LK +
Sbjct: 347 LLHAFCKQKKIHKAMEFVELMVSRGCY-PDIVSYNTLLTALCRNGEVDVAIELLHQLKDK 405
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREK 160
++ +I + +G EA+ + +EM S P + + I GL E
Sbjct: 406 GCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCREDRIEEA 465
Query: 161 VK 162
V+
Sbjct: 466 VR 467
>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
Group]
gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
Length = 796
Score = 40.4 bits (93), Expect = 0.33, Method: Composition-based stats.
Identities = 45/199 (22%), Positives = 81/199 (40%), Gaps = 26/199 (13%)
Query: 1 MSKESLMVAKELKRLQSHP--VRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLY 58
+ + SL V + L L+ HP F+ + +H S+ +D ++ L+ Q
Sbjct: 188 LPQASLDVFRSLIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQ------------ 235
Query: 59 DVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118
PD Y +L R + EA+ + +KR+ + Q T+ ++ AF+
Sbjct: 236 -----GFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFAR 290
Query: 119 SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE--KVKDDFLEL---FPDMI 173
G +A + M + P + V+ GL + E ++KD+ L PD++
Sbjct: 291 LGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVV 350
Query: 174 VYDPPEDLFEDQEWRRESD 192
Y+ D +WR SD
Sbjct: 351 TYNTLVDAC--FKWRCSSD 367
>gi|42570815|ref|NP_973481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330251569|gb|AEC06663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 349
Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 12/126 (9%)
Query: 34 LKSDLVS-------VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKK 86
+K DLVS V ++ ++L KL + ++PD F Y ++ K
Sbjct: 226 VKPDLVSFTILIDNVCNSKNLREAMYLVSKLGNA-----GFKPDCFLYNTIMKGFCTLSK 280
Query: 87 VVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRV 146
EA V++ +K E V DQ T+ +I S +G EA M + P + +
Sbjct: 281 GSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTS 340
Query: 147 ILKGLI 152
++ G+
Sbjct: 341 LMNGMC 346
>gi|297840249|ref|XP_002888006.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297333847|gb|EFH64265.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 485
Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+ Y ++ + K+V E ++ ++ + ++ D TF II+ + +G P A I
Sbjct: 312 PDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQGYFQAGRPDAAQEI 371
Query: 129 YNEMRSSPATPISLPFRVILKGLI 152
++ M S P + ++L GL
Sbjct: 372 FSRMGSRPNIR---TYSILLYGLC 392
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 3/113 (2%)
Query: 39 VSVLAEFQRQDQVFLCMKLYD-VVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL 97
+++ F R+ + K Y+ ++R+ I PD+F Y M+ L + +V EAKQ+ + +
Sbjct: 248 TALINAFVREGKFLEAKKFYEEMIRRCI--DPDVFTYNSMIHGLCMHGQVDEAKQILDLM 305
Query: 98 KREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG 150
+ D T+ +I F + E + EM ++ F I++G
Sbjct: 306 VTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQG 358
>gi|15226583|ref|NP_179165.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216226|sp|Q9ZQF1.1|PP152_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g15630, mitochondrial; Flags: Precursor
gi|4335729|gb|AAD17407.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330251331|gb|AEC06425.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 627
Score = 40.4 bits (93), Expect = 0.33, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 10/135 (7%)
Query: 23 DRFIKSHVSRLLKSDLVSV------LAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRD 76
D + V + +K DLV + D+ F +K D++ PD Y
Sbjct: 452 DELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMS----INPDDVTYNC 507
Query: 77 MLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSP 136
++ L K EA+++ ++KR + D ++ +I +S G A + +EM S
Sbjct: 508 LMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLG 567
Query: 137 ATPISLPFRVILKGL 151
P L + +LKGL
Sbjct: 568 FNPTLLTYNALLKGL 582
>gi|18071401|gb|AAL58260.1|AC068923_2 putative membrane-associated protein [Oryza sativa Japonica Group]
Length = 627
Score = 40.4 bits (93), Expect = 0.33, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++ Y ++ L + + V +A +V + + V+ D T+ I+ F SG P EA+
Sbjct: 114 PNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVF 173
Query: 129 YNEMRSSPATP 139
+MRS P
Sbjct: 174 LKKMRSDGVEP 184
Score = 39.7 bits (91), Expect = 0.59, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P+ + + ++ A+ +KV EA V+ ++++ + + T+G +I SG +AM
Sbjct: 254 PNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLY 313
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELF 169
+ +M P S+ + ++ L + ++ EK ++ FLE+
Sbjct: 314 FEQMIDEGLRPDSIVYNSLIHSLCIFDKW-EKAEELFLEML 353
>gi|356532886|ref|XP_003535000.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Glycine max]
Length = 485
Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 53 LCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDI 112
+ ++L+D++R++ +Y+P Y ++++L ++ + + A +++ + E+ + +
Sbjct: 110 IALELFDMLREQPYYQPREDTYMKLIVLLGKSSQPLRAHELFNSI-HEDGCGSTELYTAL 168
Query: 113 IRAFSDSGLPSEAMFIYNEMRSSPAT-PISLPFRVILKGLI 152
I AF + L EA+ I +EM + P+ P + ++K L+
Sbjct: 169 IAAFCQNNLVDEALSILDEMMNLPSCQPDIFTYSTLIKALV 209
>gi|356574085|ref|XP_003555182.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20740-like [Glycine max]
Length = 733
Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 46/97 (47%)
Query: 57 LYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116
+Y+ +R + +P +F Y ++ L R + A V++DLK + ++ + TF +++
Sbjct: 221 VYEKMRNKFGVKPRVFLYNRVMDALVRTGHLDLALSVYDDLKEDGLVEESVTFMVLVKGL 280
Query: 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIP 153
G E + + MR P + ++K L+P
Sbjct: 281 CKCGRIDEMLEVLGRMRERLCKPDVFAYTALVKILVP 317
Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
+E +PD+F Y ++ +L + +VWE++KR+ V D + +I + G
Sbjct: 297 RERLCKPDVFAYTALVKILVPAGNLDACLRVWEEMKRDRVEPDVKAYATMIVGLAKGGRV 356
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLI 152
E ++ EM+ L RVI L+
Sbjct: 357 QEGYELFREMKGKGC----LVDRVIYGALV 382
>gi|255553861|ref|XP_002517971.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542953|gb|EEF44489.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1029
Score = 40.4 bits (93), Expect = 0.34, Method: Composition-based stats.
Identities = 22/103 (21%), Positives = 50/103 (48%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
+++++ + Y P++ Y +L L R +K + ++ W ++ + VL +T+G ++
Sbjct: 165 VRVFEFFKSRKDYVPNVIHYNIVLRALGRAQKWDDLRRCWIEMAKSGVLPTNNTYGMLVD 224
Query: 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEF 157
+ +GL +EA+ M+ P + ++K L EF
Sbjct: 225 VYGKAGLVTEALLWIKHMKLRGLFPDEVTMNTVVKVLKDAGEF 267
>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
Length = 615
Score = 40.4 bits (93), Expect = 0.34, Method: Composition-based stats.
Identities = 31/131 (23%), Positives = 62/131 (47%), Gaps = 4/131 (3%)
Query: 24 RFIKSHVSRLLKSDLVSVLAEFQ---RQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMM 80
+ S R L+ D+ + Q ++ +V KL+D++ + I +PD+ Y ++
Sbjct: 300 KIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVR-IGVKPDIITYNTLIDG 358
Query: 81 LARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPI 140
K+ EA ++ + V D T+G +I + +A+ ++ EM SS +P
Sbjct: 359 CCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPN 418
Query: 141 SLPFRVILKGL 151
+ + +IL+GL
Sbjct: 419 IITYNIILQGL 429
>gi|297819626|ref|XP_002877696.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323534|gb|EFH53955.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1188
Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++ ++ +L R K++EAK+V +K + D F +++ ++ +G ++A +
Sbjct: 237 PNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDL 296
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPEDL 181
N+MR P + + V+++ L EK D+ + +F +M Y D+
Sbjct: 297 LNDMRKRGYEPNANCYTVLIQALCRT----EKRMDEAMRVFVEMERYGCEADI 345
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100
+L ++++Q C++L + + K+I PD+ Y ++ + ++V EA ++W +++
Sbjct: 386 ILVAHEKKEQFEECLELIEKM-KQIGCHPDLLIYNVVIRLACNFREVKEAVRLWNEMEAN 444
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREK 160
+ F +I F+ G EA + EM S S P LK L+
Sbjct: 445 GLSPGADMFVIMINGFTSQGYLIEACSHFKEMVSRGI--FSAPQYGTLKSLL-----NTL 497
Query: 161 VKDDFLELFPDM 172
++DD LE+ D+
Sbjct: 498 LRDDKLEMAKDV 509
>gi|224143615|ref|XP_002336062.1| predicted protein [Populus trichocarpa]
gi|222869847|gb|EEF06978.1| predicted protein [Populus trichocarpa]
Length = 626
Score = 40.4 bits (93), Expect = 0.34, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
Query: 52 FLCM-----KLYDVVR--KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF 104
FLCM + Y+V++ ++ PD+ Y ++ +L R + AK++W+++
Sbjct: 407 FLCMGGRVREAYEVLQEMRKKGLDPDISMYNSLIEVLCREDLLRPAKRLWDEMFVIGCGG 466
Query: 105 DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKV 161
+ T+ +I FS+ G EA ++N M TP + R +L+ L F V
Sbjct: 467 NLKTYNILIGKFSEIGQIEEATRLFNHMLEKGVTPDATTHRFLLEALCQETMFETAV 523
>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 40.4 bits (93), Expect = 0.34, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
S++ + Q +V KL+DV+ +PD+F Y ++ K++ EAKQ++ ++
Sbjct: 341 SLMHGYSLQMEVVEARKLFDVMITR-GCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIH 399
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+ + + ++ +I AF G EA ++ +M ++ P + V+L+G
Sbjct: 400 QGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGF 451
>gi|297599966|ref|NP_001048246.2| Os02g0769900 [Oryza sativa Japonica Group]
gi|46805413|dbj|BAD16915.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255671273|dbj|BAF10160.2| Os02g0769900 [Oryza sativa Japonica Group]
Length = 438
Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
S++ + R QV L +++ +RK + + M++ A N + +A + +E ++R
Sbjct: 187 SLIDMYARCGQVELARQVFSGMRKRT-----VVSWNSMIVGFAANGRCADAVEHFEAMRR 241
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS 134
E D TF ++ A S GL E + Y+ MR+
Sbjct: 242 EGFKPDAVTFTGVLTACSHGGLTDEGLRYYDLMRA 276
>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
Length = 700
Score = 40.4 bits (93), Expect = 0.36, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 57 LYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116
L D+ +K I + D+ + ++ +N K+ EA + +D+ ++V + + II A+
Sbjct: 462 LSDMQQKGI--KSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAY 519
Query: 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+SG +A + +M++S + + + ++LKGL
Sbjct: 520 IESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGL 554
>gi|449433119|ref|XP_004134345.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g01970-like [Cucumis sativus]
gi|449480346|ref|XP_004155867.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g01970-like [Cucumis sativus]
Length = 404
Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 5/139 (3%)
Query: 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWED 96
D ++ + +Q+Q+ K+ +R E + D M+ + ++ K+ AKQ +E+
Sbjct: 163 DYTKIIHHYGKQNQLEDAEKVLLSMR-ERGFVCDQITLTTMIHIYSKADKLNLAKQTFEE 221
Query: 97 LKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG--LIPY 154
LK E D+ +FG +I A+ +G P E I EM + S ++ +L+ ++
Sbjct: 222 LKLLEQPLDKRSFGAMIMAYVRAGFPEEGEKILKEMDAKDIYAGSEVYKALLRAYSMVGN 281
Query: 155 PEFREKVKD--DFLELFPD 171
E ++V D + PD
Sbjct: 282 AEGAQRVFDAIQLAAITPD 300
>gi|242050480|ref|XP_002462984.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
gi|241926361|gb|EER99505.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
Length = 668
Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 6/120 (5%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
RPD FY M+ + + A ++ ++ EE+ D T+ +I A G AM
Sbjct: 401 RPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEEIEPDVVTWNTLIDAHCKGGRHDRAME 460
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLE-----LFPDMIVYDPPEDLF 182
++ EMR S P + + +++ L+ E E V+ E L P++I Y D++
Sbjct: 461 LFEEMRESNCPPGTTTYNIMIN-LLGEQERWEGVEAMLSEMKEQGLVPNIITYTTLVDVY 519
>gi|297804554|ref|XP_002870161.1| hypothetical protein ARALYDRAFT_915114 [Arabidopsis lyrata subsp.
lyrata]
gi|297315997|gb|EFH46420.1| hypothetical protein ARALYDRAFT_915114 [Arabidopsis lyrata subsp.
lyrata]
Length = 702
Score = 40.4 bits (93), Expect = 0.37, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 54 CMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113
C+ +Y+ + K + +P++ Y +L + R K+ +AK + +DL + T+ +I
Sbjct: 299 CLNIYEEM-KALGVKPNLVIYNRLLDSMGRAKRPWQAKIIHKDLISNGFTPNWSTYAALI 357
Query: 114 RAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
RA+ + +A+ IY EM+ L VIL + D+ E+F DM
Sbjct: 358 RAYGRARYGDDALVIYREMKEK-----GLSLTVILYNTLLSMCADIGYVDEAFEIFQDM 411
>gi|26449475|dbj|BAC41864.1| unknown protein [Arabidopsis thaliana]
gi|29028966|gb|AAO64862.1| At5g25630 [Arabidopsis thaliana]
Length = 574
Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 16/164 (9%)
Query: 16 QSHPVRFD----RFIKSHV----SRLLKS--DLVSVLAEFQRQDQVFLCMKLYDVVRKEI 65
+S P++ RF KS V R ++S L++VL E R + K E
Sbjct: 19 RSTPIKTTGGQYRFCKSCVEGSSCRTVRSRTKLMNVLIERGRPHEAQTVFKTL----AET 74
Query: 66 WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEA 125
+RP + Y +L + K+ + ++++ D F +I AFS+SG +A
Sbjct: 75 GHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSGTKLDSIFFNAVINAFSESGNMEDA 134
Query: 126 MFIYNEMRSSPATPISLPFRVILK--GLIPYPEFREKVKDDFLE 167
+ +M+ P + + ++K G+ PE ++ D LE
Sbjct: 135 VQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLE 178
>gi|414871694|tpg|DAA50251.1| TPA: hypothetical protein ZEAMMB73_705675 [Zea mays]
Length = 1161
Score = 40.4 bits (93), Expect = 0.37, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 45 FQRQDQVFLCMKLYD-VVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVL 103
+ ++ Q + LY +VRK I RPD YR +++ L+ + A + E + E +
Sbjct: 796 YVKRGQFSKSLYLYKYMVRKGI--RPDNVTYRLLILGLSECGLIDIAVKFLEKMVLEGIF 853
Query: 104 FDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIP--YPEFREKV 161
D+ F +I AFS+ A+ ++N M+ +P S F ++ GLI Y + KV
Sbjct: 854 PDRLVFDILITAFSEKSKMHNALQVFNCMKWLHMSPSSKTFSAMINGLIRKGYLDHSHKV 913
Query: 162 KDDFLEL 168
+ L++
Sbjct: 914 LHEMLQV 920
>gi|326523953|dbj|BAJ96987.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1092
Score = 40.4 bits (93), Expect = 0.37, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 55 MKLY-DVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113
+ LY D+ +K I P+++ Y +++ L + K EA +++E+L + + T+ +I
Sbjct: 996 LSLYNDMEKKGI--APNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALI 1053
Query: 114 RAFSDSGLPSEAMFIYNEM-----RSSPATPISLPFRVI 147
R +S SG P A Y M R + +T + LP +++
Sbjct: 1054 RGYSVSGSPENAFAAYGRMIVGGCRPNSSTYMQLPNQML 1092
>gi|293333312|ref|NP_001168014.1| uncharacterized protein LOC100381738 [Zea mays]
gi|223945505|gb|ACN26836.1| unknown [Zea mays]
Length = 462
Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD + Y +L L K+ +A+++ ++ R ++ TF IRAF +GL A+ +
Sbjct: 5 PDTYTYNTVLKGLCCAKQWEQAEELMREMIRNSCHPNEVTFATQIRAFCQNGLLDRAVEL 64
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVK-DDFLELFPDMIVYD 176
+M TP + + ++ G + E +K + + P+ + Y+
Sbjct: 65 LEQMPKYGCTPDVIIYSTLVNGFSEHGRVDEALKLLNTMLCRPNTVCYN 113
Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 6/125 (4%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
R D+F Y L L + +A ++ D+ E+ L ++ TF +I + GL + A+
Sbjct: 310 RADIFSYNATLKGLCMAARWDDAGELIADMVTEDCLPNEVTFNILISSLCQKGLVNRAID 369
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELF---PDMIVYDPP-EDLFE 183
+Y +M TP + ++ G + +K FL PD I Y+ + L
Sbjct: 370 VYEQMPKYGITPDIFTYNALINGYSEQGRLDDALK--FLSTMPCEPDTISYNSILKGLCR 427
Query: 184 DQEWR 188
+ W+
Sbjct: 428 AERWK 432
>gi|115457858|ref|NP_001052529.1| Os04g0350000 [Oryza sativa Japonica Group]
gi|113564100|dbj|BAF14443.1| Os04g0350000, partial [Oryza sativa Japonica Group]
Length = 263
Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
Query: 74 YRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133
Y +L L RN EA + E L V FD TF +IRA G EA ++ +
Sbjct: 86 YATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAIS 145
Query: 134 SSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
+ P L +RV++ LI F +D LF M
Sbjct: 146 TYGLVPTILTYRVMITNLIKEESF-----EDADNLFSSM 179
>gi|30689969|ref|NP_197945.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|357528836|sp|Q8GZ63.2|PP397_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g25630
gi|332006092|gb|AED93475.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 574
Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 16/164 (9%)
Query: 16 QSHPVRFD----RFIKSHV----SRLLKS--DLVSVLAEFQRQDQVFLCMKLYDVVRKEI 65
+S P++ RF KS V R ++S L++VL E R + K E
Sbjct: 19 RSTPIKTTGGQYRFCKSCVEGSSCRTVRSRTKLMNVLIERGRPHEAQTVFKTL----AET 74
Query: 66 WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEA 125
+RP + Y +L + K+ + ++++ D F +I AFS+SG +A
Sbjct: 75 GHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSGTKLDSIFFNAVINAFSESGNMEDA 134
Query: 126 MFIYNEMRSSPATPISLPFRVILK--GLIPYPEFREKVKDDFLE 167
+ +M+ P + + ++K G+ PE ++ D LE
Sbjct: 135 VQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLE 178
>gi|15240649|ref|NP_199839.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170477|sp|Q9FGR7.1|PP426_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g50280, chloroplastic; AltName: Full=Protein EMBRYO
DEFECTIVE 1006; Flags: Precursor
gi|9759030|dbj|BAB09399.1| unnamed protein product [Arabidopsis thaliana]
gi|332008538|gb|AED95921.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 723
Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 34 LKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQV 93
L + +S L+ QR D + ++Y+ + K I PD ++ L + + AK+V
Sbjct: 275 LYNAAISGLSASQRYDDAW---EVYEAMDK-INVYPDNVTCAILITTLRKAGR--SAKEV 328
Query: 94 WE---DLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEM 132
WE + + V + Q FG ++++F D GL EA+ I EM
Sbjct: 329 WEIFEKMSEKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEM 370
>gi|321462789|gb|EFX73810.1| hypothetical protein DAPPUDRAFT_324958 [Daphnia pulex]
Length = 945
Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 57 LYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116
L ++ +EI +PD Y+ +L+ + + AK++ LK +E++ D T+ I+
Sbjct: 134 LSTMIEREI--QPDRVTYQRLLIAYTQKGDLEGAKKILNILKHKELVIDYRTYNAIVTGH 191
Query: 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEF 157
S G A I + M + TP + +R +LKG Y +F
Sbjct: 192 SMMGDWEGAKSIISSMSAKGLTPDTETYRELLKG---YAKF 229
>gi|297823043|ref|XP_002879404.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325243|gb|EFH55663.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 605
Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+P+ Y M+ + KV EA+++W ++K + D +T+ +I + EAM
Sbjct: 482 QPNAITYNVMIYAYCKQGKVKEARKLWANMKANGMDPDSYTYTSLIHGECIADNVDEAMR 541
Query: 128 IYNEMRSSPATPISLPFRVILKGL 151
+++EM S+ + V++ GL
Sbjct: 542 LFSEMGLKGLDQNSVTYTVMISGL 565
Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 56 KLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
KL+D +R E D+ Y ++ R + A ++++L + +L HT+G +I
Sbjct: 296 KLFDEMR-ERGIESDIHVYTSLISWNCRKGNIKRAFLLFDELTEKGLLPSSHTYGALIDG 354
Query: 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG 150
G A + NEM+S + F ++ G
Sbjct: 355 VCKVGEMGAAEILMNEMQSKGVNITQVVFNTLING 389
>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g41170, mitochondrial; Flags: Precursor
gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 527
Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+ Y ++ + KKV +A +++ ++ ++ + + T+ +I+ F G P+ A +
Sbjct: 315 PDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEV 374
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
++ M S P + V+L L + KVK + +F DM
Sbjct: 375 FSHMVSRGVPPNIRTYNVLLHCLC----YNGKVKKALM-IFEDM 413
>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Vitis vinifera]
Length = 740
Score = 40.4 bits (93), Expect = 0.39, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD+F + ++ L + K EA +++D+ E V+ + T+ +I AF G EA+
Sbjct: 509 KPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALK 568
Query: 128 IYNEM--RSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
+ N+M R P I+ + ++K L R + L LF DM+
Sbjct: 569 LVNDMLFRGCPLDDIT--YNGLIKALC-----RAGNIEKGLALFEDMM 609
>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
Length = 722
Score = 40.4 bits (93), Expect = 0.39, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD+F + ++ L + K EA +++D+ E V+ + T+ +I AF G EA+
Sbjct: 491 KPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALK 550
Query: 128 IYNEM--RSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
+ N+M R P I+ + ++K L R + L LF DM+
Sbjct: 551 LVNDMLFRGCPLDDIT--YNGLIKALC-----RAGNIEKGLALFEDMM 591
>gi|125528152|gb|EAY76266.1| hypothetical protein OsI_04202 [Oryza sativa Indica Group]
Length = 528
Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 4/128 (3%)
Query: 24 RFIKSHVSRLLKSDLVS---VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMM 80
RF + + +K D+VS +++ F + + MKL++ + KE PD Y ++
Sbjct: 270 RFWNAMEIKGIKRDVVSYGSMISCFSKAGSLDTVMKLFNRM-KEAGVVPDRKIYNAVVYA 328
Query: 81 LARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPI 140
LA+ + V EAK + ++ + V D TF +IR + EA + ++M +P
Sbjct: 329 LAKGRCVNEAKALVRSMEEKGVAPDTATFNSLIRPLCKARQVQEARKMLDDMLGRGLSPS 388
Query: 141 SLPFRVIL 148
F +L
Sbjct: 389 VRTFHALL 396
>gi|356520989|ref|XP_003529141.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Glycine max]
Length = 682
Score = 40.4 bits (93), Expect = 0.39, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Query: 45 FQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF 104
F+R D V ++R+E+ + P + Y M+ L + + E ++WE +K+ E
Sbjct: 229 FKRGDFVKAGEMWERLLREELVF-PSVVSYNVMISGLCKCGRFSEGLEIWERMKKNERKC 287
Query: 105 DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
D T+ +I S++G A +Y EM P + +L GL
Sbjct: 288 DLFTYSALIHGLSEAGDLGGARKVYEEMVGRGVRPDVVTCNAMLNGL 334
Score = 37.4 bits (85), Expect = 2.9, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Query: 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIY 129
D F Y ++ L + ++ EA V E + + F+ H +I F A+ ++
Sbjct: 425 DEFAYSSLINALCKEGRLDEADGVVELMNKRGCKFNSHVCNVLIDGFVKHSKLDSAVKVF 484
Query: 130 NEMRSSPATPISLPFRVILKGLIPYPEFREKVK--DDFLE--LFPDMIVY 175
EM + + + +++ GL+ FRE ++ LE PD+I Y
Sbjct: 485 REMSGKGCSLTVVSYNILINGLLRAERFREAYDCVNEMLEKGWKPDIITY 534
>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
Length = 658
Score = 40.4 bits (93), Expect = 0.39, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
RP++ Y ++ L R K EAK++ + L + +T+ +++ F +GL EA+
Sbjct: 394 RPNIVVYSAVIDGLCREGKPNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQ 453
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKV----KDDFLELFPDMIVY 175
++ EM + + + V++ GL +E + K + + PD + Y
Sbjct: 454 VWREMDETGCSRNEFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAY 505
>gi|242048586|ref|XP_002462039.1| hypothetical protein SORBIDRAFT_02g013138 [Sorghum bicolor]
gi|241925416|gb|EER98560.1| hypothetical protein SORBIDRAFT_02g013138 [Sorghum bicolor]
Length = 798
Score = 40.4 bits (93), Expect = 0.39, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
Query: 33 LLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQ 92
+L + ++ AE R D F +D + KE + PD F Y +L L + + A+
Sbjct: 352 VLYTIMIRGCAEAGRIDDAF---AFFDEM-KEKRFTPDTFCYNTLLKALCDSGDLDGARS 407
Query: 93 VWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+ ++ + V+ D +T +I L EAM +++ M P + + V++ GL
Sbjct: 408 LMSEMAQNNVVLDTNTHTIMIHGLCKKQLVDEAMQVFDGMVEVGCHPTVMTYNVLIDGL 466
>gi|224090111|ref|XP_002308939.1| predicted protein [Populus trichocarpa]
gi|222854915|gb|EEE92462.1| predicted protein [Populus trichocarpa]
Length = 786
Score = 40.4 bits (93), Expect = 0.39, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 42/72 (58%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
RPD+ Y +L R+++ +A++V+E +KR+++ + ++ +I A+ +GL +EA+
Sbjct: 379 RPDVVSYTSLLNSYGRSQQPKKAREVFEMMKRDKLKPNIVSYNAMIDAYGSNGLLAEAVE 438
Query: 128 IYNEMRSSPATP 139
+ EM P
Sbjct: 439 VLREMEQDGIYP 450
>gi|357140426|ref|XP_003571769.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Brachypodium distachyon]
Length = 637
Score = 40.4 bits (93), Expect = 0.39, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 46/85 (54%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
Y+ D+F Y +L LA+ V +A QV+ED+K++ + D +T+ +IR +G + +
Sbjct: 217 YKLDIFAYNMLLDALAKAGMVDQAYQVFEDMKQKYCVPDAYTYTILIRMSGKTGQTYKFL 276
Query: 127 FIYNEMRSSPATPISLPFRVILKGL 151
++EM S + + +++ L
Sbjct: 277 SFFDEMVSRGCALNLIAYNTVIEAL 301
>gi|326510087|dbj|BAJ87260.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326520816|dbj|BAJ92771.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1092
Score = 40.4 bits (93), Expect = 0.39, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 55 MKLY-DVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113
+ LY D+ +K I P+++ Y +++ L + K EA +++E+L + + T+ +I
Sbjct: 996 LSLYNDMEKKGI--APNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALI 1053
Query: 114 RAFSDSGLPSEAMFIYNEM-----RSSPATPISLPFRVI 147
R +S SG P A Y M R + +T + LP +++
Sbjct: 1054 RGYSVSGSPENAFAAYGRMIVGGCRPNSSTYMQLPNQML 1092
>gi|255661212|gb|ACU25775.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
Length = 426
Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 6/125 (4%)
Query: 31 SRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVR------KEIWYRPDMFFYRDMLMMLARN 84
SRL +S +V L + VF KL+ R + + PD Y +L M N
Sbjct: 68 SRLKRSGIVPDLVAYNSMINVFGKAKLFREARSLISEMRMVGVVPDTVSYSTLLTMYVEN 127
Query: 85 KKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPF 144
+K +EA V+ +++ + L D T +I + + EA ++ MR P + +
Sbjct: 128 QKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKMGIEPNVVSY 187
Query: 145 RVILK 149
+L+
Sbjct: 188 NTLLR 192
>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 40.4 bits (93), Expect = 0.40, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 64/137 (46%), Gaps = 9/137 (6%)
Query: 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWE 95
S L+S L + R L D++ ++I PD+F + ++ + K+VEA+++++
Sbjct: 295 SSLISCLCNYGRWSDA--SRLLSDMIERKI--NPDVFTFSALIDAFVKEGKLVEAEKLYD 350
Query: 96 DLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYP 155
++ + + T+ +I F EA ++ M S P + + ++KG
Sbjct: 351 EMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFC--- 407
Query: 156 EFREKVKDDFLELFPDM 172
+ K D+ +ELF +M
Sbjct: 408 --KAKRVDEGMELFREM 422
Score = 37.7 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
RP++ Y ++ L + +A ++ D+ ++ D TF +I AF G EA
Sbjct: 288 RPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEK 347
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFRE-KVKDDFL---ELFPDMIVY 175
+Y+EM P + + ++ G + E K +F+ FPD++ Y
Sbjct: 348 LYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSY 399
>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Vitis vinifera]
Length = 748
Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 64/137 (46%), Gaps = 4/137 (2%)
Query: 23 DRFIKSHVSRLLKSDLV---SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLM 79
+R ++ +S + D V +++ F + V +L+D ++K PD Y ++
Sbjct: 343 ERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKR-KISPDFITYTAVIC 401
Query: 80 MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
L + +V+EA +++ ++ + + D+ T+ +I + G EA ++N+M TP
Sbjct: 402 GLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTP 461
Query: 140 ISLPFRVILKGLIPYPE 156
+ + + GL E
Sbjct: 462 NIVTYTALADGLCKCGE 478
>gi|255661202|gb|ACU25770.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
Length = 426
Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 6/125 (4%)
Query: 31 SRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVR------KEIWYRPDMFFYRDMLMMLARN 84
SRL +S + L + VF KL+ R + PD Y +L M N
Sbjct: 68 SRLKRSGIAPDLVAYNSMINVFGKAKLFREARALVSEMRTAGVMPDTVSYCTLLTMYVEN 127
Query: 85 KKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPF 144
+K +EA ++ +++ + FD T +I + G+ EA ++ MR P + +
Sbjct: 128 QKFLEALSLFSEMREIQCSFDLTTCNIMIDVYGQLGMAKEADKLFWSMRKMGIEPNVVSY 187
Query: 145 RVILK 149
+L+
Sbjct: 188 NTLLR 192
>gi|293335157|ref|NP_001169529.1| uncharacterized protein LOC100383403 [Zea mays]
gi|224029903|gb|ACN34027.1| unknown [Zea mays]
gi|414887232|tpg|DAA63246.1| TPA: hypothetical protein ZEAMMB73_160132 [Zea mays]
Length = 819
Score = 40.4 bits (93), Expect = 0.40, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
S++ + Q C ++D++ E RP++ Y +L A + EA + ++ LK+
Sbjct: 335 SIMYSYSVCGQAENCKAVFDIMVAE-GVRPNIVSYNALLGAYASHGMHTEALETFKLLKQ 393
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
+ D ++ ++ A+ S P +A ++NEMR + P + + ++
Sbjct: 394 NGLRPDIVSYTSLLNAYGRSAQPEKAREVFNEMRKNACKPNKVSYNALI 442
>gi|224160730|ref|XP_002338246.1| predicted protein [Populus trichocarpa]
gi|222871516|gb|EEF08647.1| predicted protein [Populus trichocarpa]
Length = 235
Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Query: 60 VVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119
+VRK P + Y ++ +++ + EAK + ++ +E+ D T+ +++
Sbjct: 1 MVRKGCG--PVVHSYNILINGYCQSRMMDEAKSLLAEMSEKELTPDTVTYSTLMQGLCQV 58
Query: 120 GLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
G P EA+ ++ EM S+ P + + ++L G + E +K
Sbjct: 59 GRPQEALNLFKEMCSTGLLPNLVTYSILLDGFWKHGHLDEALK 101
>gi|224114227|ref|XP_002316702.1| predicted protein [Populus trichocarpa]
gi|222859767|gb|EEE97314.1| predicted protein [Populus trichocarpa]
Length = 396
Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
KE PD+ Y L+ L K++ + +V E++K E + D ++ +IR F + G
Sbjct: 227 KEKNVEPDIRSYNAKLLGLTLEKRMEDVVKVVEEMKSEGIQLDTFSYSTLIRGFVNEGDL 286
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYP 155
+A Y+E+ S L L+GLIP+
Sbjct: 287 KKAKHWYHEIGRSGCKRDKLT----LEGLIPFA 315
>gi|42567830|ref|NP_196881.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75115356|sp|Q66GP4.1|PP379_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g13770, chloroplastic; Flags: Precursor
gi|51536486|gb|AAU05481.1| At5g13770 [Arabidopsis thaliana]
gi|53850491|gb|AAU95422.1| At5g13770 [Arabidopsis thaliana]
gi|332004556|gb|AED91939.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 609
Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 56 KLYDVVR-----KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFG 110
+L D VR K+ +P+++ Y ++ M R + A+++W+++KR +VL D+ ++
Sbjct: 438 RLSDAVRLMAKMKQRGCKPNIWIYNSLIDMHGRAMDLRRAEKIWKEMKRAKVLPDKVSYT 497
Query: 111 DIIRAFSDSGLPSEAMFIYNEMR 133
+I A++ S + +Y E R
Sbjct: 498 SMISAYNRSKELERCVELYQEFR 520
>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 718
Score = 40.4 bits (93), Expect = 0.40, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 44/96 (45%)
Query: 57 LYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116
L ++ E+ ++PD FY L L + K+ + + + E ++ D TF +I+A
Sbjct: 109 LLKILENELGFKPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKAL 168
Query: 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
+ A+ + EM + P + F +++G I
Sbjct: 169 CKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFI 204
Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 40/83 (48%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+F Y ++ L R +V A ++ ++ + ++ H + +I+A E M +
Sbjct: 541 PDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRL 600
Query: 129 YNEMRSSPATPISLPFRVILKGL 151
+ EM P +L +++ +GL
Sbjct: 601 FREMMEKSDPPDALTHKIVFRGL 623
>gi|356561683|ref|XP_003549109.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 445
Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 51 VFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFG 110
+ LC K+ KE +P+++ Y +L L + ++ AKQ ++ L + + T+
Sbjct: 326 IALCKKM-----KEQGIQPNVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYN 380
Query: 111 DIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
+I +GL + M + ++M P ++ F+ I+ L+
Sbjct: 381 VMINGLCKAGLFGDVMDLKSKMEGKGCMPNAITFKTIICALL 422
Score = 39.3 bits (90), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD+ Y ++ L +NK + +A ++ ++ + + + T+ +I F G EA
Sbjct: 198 KPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFS 257
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
+ NEM+ P F +++ L +E D+ + LF +M
Sbjct: 258 LLNEMKLKNINPDVYTFNILIDALA-----KEGKIDEAMSLFEEM 297
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 69/152 (45%), Gaps = 14/152 (9%)
Query: 2 SKESLMVAKELKRLQSHPVRFDRFIKSHVSRLL-KSDLVSVLAEFQRQDQVFLCMKLYDV 60
+ E+ VA+ L++L+ H V+ D + + + L K+ L+ + + +
Sbjct: 179 AGETKAVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSE-----------M 227
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
+ K I P++F Y ++ + EA + ++K + + D +TF +I A + G
Sbjct: 228 IVKGI--SPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALAKEG 285
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
EAM ++ EM+ P + + ++ GL
Sbjct: 286 KIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLC 317
>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
Length = 764
Score = 40.4 bits (93), Expect = 0.41, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 8/119 (6%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
K + + P + Y ++ LA+ ++ EA ++E+ K + +Q + +I F G
Sbjct: 507 KTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRV 566
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE------KVKDDFLELFPDMIVY 175
EA + EM TP + +L GL+ E E +KD L+ P+ I Y
Sbjct: 567 DEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKD--LKCTPNQITY 623
>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
Length = 648
Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 64/137 (46%), Gaps = 4/137 (2%)
Query: 23 DRFIKSHVSRLLKSDLV---SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLM 79
+R ++ +S + D V +++ F + V +L+D ++K PD Y ++
Sbjct: 243 ERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKR-KISPDFITYTAVIC 301
Query: 80 MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
L + +V+EA +++ ++ + + D+ T+ +I + G EA ++N+M TP
Sbjct: 302 GLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTP 361
Query: 140 ISLPFRVILKGLIPYPE 156
+ + + GL E
Sbjct: 362 NIVTYTALADGLCKCGE 378
>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g06920-like [Cucumis sativus]
Length = 904
Score = 40.4 bits (93), Expect = 0.41, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 36/67 (53%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
++P++F Y M+ LA+ +VEA ++E K + + D + II S++ S+A
Sbjct: 790 FKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAY 849
Query: 127 FIYNEMR 133
++ E R
Sbjct: 850 RLFEEAR 856
>gi|384495258|gb|EIE85749.1| hypothetical protein RO3G_10459 [Rhizopus delemar RA 99-880]
Length = 578
Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 39 VSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLK 98
+ ++ +Q+Q F +KL++ E ++P + + +L +LA K+ A V+ +
Sbjct: 279 IKLMNAYQKQQNSFQALKLFEQFL-EGDHQPSLKGFNAILHILAFQKEPDRAVFVFSAML 337
Query: 99 REEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
+ + D T+ ++IRA+S S S+ +F YN+M + TP
Sbjct: 338 KLNIKPDAATYTEMIRAYSRSTDQSKCIFFYNKMLQNQLTP 378
>gi|296081308|emb|CBI17752.3| unnamed protein product [Vitis vinifera]
Length = 729
Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 23 DRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLA 82
D ++ V+ ++ LV L + R D+V ++L D +R + +PD+F Y M+ +L
Sbjct: 251 DGLVEESVTYMI---LVKGLCKAGRIDEV---LELLDRMRGNLC-KPDVFAYTAMVKVLV 303
Query: 83 RNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133
+ +VWE++++++V D + ++ A + E ++ EM+
Sbjct: 304 AEGNLDGCLRVWEEMRKDKVEPDVMAYTTLVAALCNGNRVGEGFELFKEMK 354
>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Cucumis sativus]
Length = 904
Score = 40.4 bits (93), Expect = 0.42, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 36/67 (53%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
++P++F Y M+ LA+ +VEA ++E K + + D + II S++ S+A
Sbjct: 790 FKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAY 849
Query: 127 FIYNEMR 133
++ E R
Sbjct: 850 RLFEEAR 856
>gi|326531238|dbj|BAK04970.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 660
Score = 40.4 bits (93), Expect = 0.42, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 45/84 (53%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++ Y ML L + + A++++ + ++E+L D T+ +I + EA+ +
Sbjct: 538 PNVNLYNIMLHHLCKVGDLKRAQKIFLHMIQKEILPDIVTYNTLIYWLGKNSRAMEALDL 597
Query: 129 YNEMRSSPATPISLPFRVILKGLI 152
+ +MR+ P SL F+ ++ GL+
Sbjct: 598 FKDMRTKGVEPDSLTFKYLINGLL 621
>gi|125542133|gb|EAY88272.1| hypothetical protein OsI_09727 [Oryza sativa Indica Group]
Length = 450
Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
+++++++RK+ WY+P Y +LMML + ++ A +++ + E + + ++
Sbjct: 73 LEIFELLRKQQWYKPRSQTYARLLMMLGKCRQPGAATALFKVMLSERLKPTVDVYTALVG 132
Query: 115 AFSDSGLPSEAMFIYNEMRS-SPATPISLPFRVILK 149
A+ SGL EA+ +M+ + P F V++
Sbjct: 133 AYGYSGLLDEALATVEQMKGVADCKPDEYTFSVLIN 168
>gi|297600539|ref|NP_001049380.2| Os03g0215900 [Oryza sativa Japonica Group]
gi|108706847|gb|ABF94642.1| RSP67.2, putative, expressed [Oryza sativa Japonica Group]
gi|255674311|dbj|BAF11294.2| Os03g0215900 [Oryza sativa Japonica Group]
Length = 676
Score = 40.0 bits (92), Expect = 0.42, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 40/81 (49%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
R ++ Y L L + ++ +A+ +WE++ RE V D TF +I G+P +A+
Sbjct: 146 RKEVILYNVALKALRKRRRWSDAEALWEEMLREGVQPDNATFSTVISCARACGMPGKAVE 205
Query: 128 IYNEMRSSPATPISLPFRVIL 148
+ +M +P L + ++
Sbjct: 206 WFEKMPDFGCSPDMLTYSAVI 226
>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
Length = 1060
Score = 40.0 bits (92), Expect = 0.42, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Query: 75 RDMLMMLARNKKVVEAKQVWEDLKR-EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133
RD++ L ++++ V+ L R E F + FG +I AFS+ GL EA+++Y +M
Sbjct: 94 RDLIQCLQKSRRSRICCSVFNVLSRLESSKFTPNVFGVLIIAFSEMGLVEEALWVYYKMD 153
Query: 134 SSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
PA ++L GL+ F D +++ DM+
Sbjct: 154 VLPAMQAC---NMVLDGLVKKGRF-----DTMWKVYGDMV 185
>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
Length = 761
Score = 40.0 bits (92), Expect = 0.43, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD + Y ++ A+ KV EA V+ ++++ + D T+G +I SG +AM
Sbjct: 339 PDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLY 398
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELF 169
+ +M +P ++ + ++ GL ++ E+ ++ LE+
Sbjct: 399 FEQMIDEGLSPGNIVYNSLIHGLCTCNKW-ERAEELILEML 438
>gi|115482764|ref|NP_001064975.1| Os10g0499500 [Oryza sativa Japonica Group]
gi|22165074|gb|AAM93691.1| hypothetical protein [Oryza sativa Japonica Group]
gi|31432889|gb|AAP54465.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639584|dbj|BAF26889.1| Os10g0499500 [Oryza sativa Japonica Group]
gi|125575293|gb|EAZ16577.1| hypothetical protein OsJ_32049 [Oryza sativa Japonica Group]
gi|215694503|dbj|BAG89496.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215697419|dbj|BAG91413.1| unnamed protein product [Oryza sativa Japonica Group]
gi|295901486|dbj|BAJ07249.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
Group]
gi|295901490|dbj|BAJ07251.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
Group]
Length = 506
Score = 40.0 bits (92), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 56 KLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
K++D + K +PD+ Y +L A +VE +++ + + ++ D + F +I A
Sbjct: 324 KIFDSMVKR-GLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYA 382
Query: 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
+ G EAM ++++MR P + + ++ G ++ L LF +M+
Sbjct: 383 SAKQGKVDEAMLVFSKMRQQGLKPNCVTYSTLINGYCKITRM-----ENALALFQEMV 435
>gi|347954480|gb|AEP33740.1| chlororespiratory reduction 21, partial [Matthiola maderensis]
Length = 807
Score = 40.0 bits (92), Expect = 0.43, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 56/101 (55%), Gaps = 10/101 (9%)
Query: 80 MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
M A+ +V AK+V++ +++++ + ++ A++DSGL EA+ ++ EM+ P
Sbjct: 395 MYAKCGSIVNAKKVFDSTVQKDLIL----WNTLLSAYADSGLSGEALRLFYEMQLESVPP 450
Query: 140 ISLPFRVILKGLIPYPEFREKVKDDFLEL-----FPDMIVY 175
+ + +I+ L+ + E K+ FL++ FP++I +
Sbjct: 451 NVITWNLIILSLLRNGQVNE-AKEMFLQMQSSGIFPNLISW 490
>gi|347954478|gb|AEP33739.1| chlororespiratory reduction 21, partial [Matthiola sinuata]
Length = 794
Score = 40.0 bits (92), Expect = 0.43, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 56/101 (55%), Gaps = 10/101 (9%)
Query: 80 MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
M A+ +V AK+V++ +++++ + ++ A++DSGL EA+ ++ EM+ P
Sbjct: 383 MYAKCGSIVNAKKVFDSTVQKDLIL----WNTLLSAYADSGLSGEALRLFYEMQLESVPP 438
Query: 140 ISLPFRVILKGLIPYPEFREKVKDDFLEL-----FPDMIVY 175
+ + +I+ L+ + E K+ FL++ FP++I +
Sbjct: 439 NVITWNLIILSLLRNGQVNE-AKEMFLQMQSSGIFPNLISW 478
>gi|347954476|gb|AEP33738.1| chlororespiratory reduction 21, partial [Matthiola incana]
Length = 784
Score = 40.0 bits (92), Expect = 0.43, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 56/101 (55%), Gaps = 10/101 (9%)
Query: 80 MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
M A+ +V AK+V++ +++++ + ++ A++DSGL EA+ ++ EM+ P
Sbjct: 396 MYAKCGSIVNAKKVFDSTVQKDLIL----WNTLLSAYADSGLSGEALRLFYEMQLESVPP 451
Query: 140 ISLPFRVILKGLIPYPEFREKVKDDFLEL-----FPDMIVY 175
+ + +I+ L+ + E K+ FL++ FP++I +
Sbjct: 452 NVITWNLIILSLLRNGQVNE-AKEMFLQMQSSGIFPNLISW 491
>gi|255575578|ref|XP_002528689.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531861|gb|EEF33678.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 271
Score = 40.0 bits (92), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 56 KLYDV--VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113
K Y+V V I +P++ Y +L L KV EA ++ ED+K+ + D +T+ ++
Sbjct: 175 KAYEVIDVMNTIGCQPNVQTYNCLLKGLCYIGKVEEAYEILEDIKKSSIEPDIYTYTAMM 234
Query: 114 RAFSDSGLPSEAMFIYNE 131
F G EAM + NE
Sbjct: 235 DGFCKVGRSEEAMQLLNE 252
>gi|124002133|ref|ZP_01686987.1| outer membrane protein OmpA family [Microscilla marina ATCC 23134]
gi|123992599|gb|EAY31944.1| outer membrane protein OmpA family [Microscilla marina ATCC 23134]
Length = 617
Score = 40.0 bits (92), Expect = 0.43, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 72 FFYRDMLMML------ARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118
FFY ++++L A+NKKV E KQ E LKR LFD +G I + D
Sbjct: 4 FFYLLIVLLLGGAVAQAQNKKVNETKQAEEALKRANKLFDNEKYGRAIEMYKD 56
>gi|414864365|tpg|DAA42922.1| TPA: hypothetical protein ZEAMMB73_846849 [Zea mays]
Length = 485
Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
+++++++RK+ WY P Y +LMML + ++ A ++ ++ E + + +I
Sbjct: 109 LEIFELLRKQHWYEPRSQTYARLLMMLGKCRQPGPAAGLFREMLSERLRPTADVYTALIG 168
Query: 115 AFSDSGLPSEAMFIYNEMRSSP-ATPISLPFRVIL 148
A+ SGL A+ +M+ + P F V++
Sbjct: 169 AYGYSGLLEHALAAVEQMKGAADCKPDGYTFSVLV 203
>gi|357143748|ref|XP_003573036.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Brachypodium distachyon]
Length = 484
Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
S++ + R QV +++ +RK + + M++ A N + +A + +E ++R
Sbjct: 243 SLIDMYARCGQVDFARQVFGRIRKRT-----VVSWNSMIVGFAANGQYADAVEHFEAMRR 297
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS 134
E D TF ++ A S +GL E + Y+ MR+
Sbjct: 298 EGFKPDTVTFTGVLTACSHAGLTDEGLRYYDAMRT 332
>gi|302771417|ref|XP_002969127.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
gi|300163632|gb|EFJ30243.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
Length = 646
Score = 40.0 bits (92), Expect = 0.44, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 40/82 (48%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++ Y +L ++ ++ +A +V+ D+ V D TF ++ ++S GL EA+ +
Sbjct: 564 PNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSSLGLYKEALSV 623
Query: 129 YNEMRSSPATPISLPFRVILKG 150
M P + F+ +L G
Sbjct: 624 IEYMTEHGCQPTQITFKALLDG 645
>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 528
Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 13/162 (8%)
Query: 22 FDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYD--VVRKEIWYRPDMFFYRDMLM 79
F F S VS L S ++ A + F + ++ R + P+ Y +M+
Sbjct: 93 FSHFSTSPVSPSLVSHVIEKCAAVRHGIPFFQALSFFNWATSRPGFTHHPEP--YNEMID 150
Query: 80 MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
+ + + QV + +K V TF +IR + +GL SEA+ +N M P
Sbjct: 151 LAGKVRNFDLGWQVIDLMKARNVEISIETFSILIRRYVRAGLASEAVHAFNRMEDYNCKP 210
Query: 140 ISLPFRVILKGLI------PYPEFREKVKDDFLELFPDMIVY 175
+ F +++ L F + +KD F PD+IVY
Sbjct: 211 DKIAFSILISILCRKRRATEAQSFFDSLKDKFE---PDVIVY 249
>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 794
Score = 40.0 bits (92), Expect = 0.44, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
RP+ F + +L L + ++ +A++V++DL + D + + +I GL EA+
Sbjct: 689 RPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALT 748
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
+ ++M + P ++ F +I+ L F++ D +L MI
Sbjct: 749 MLSKMEENGCIPNAVTFDIIINAL-----FKKDENDKAEKLLRQMI 789
Score = 38.9 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD+F Y ++ +V +A+ V+ + V D HT+ +I F S + EA+
Sbjct: 549 KPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALN 608
Query: 128 IYNEMRSSPATPISLPFRVILKGL 151
++ EM P ++ + ++ GL
Sbjct: 609 LFKEMHQKNMVPDTVTYSSLVDGL 632
>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
Length = 553
Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+ Y +L L + K+ +A +V + ++E D T+ +I A +AM +
Sbjct: 157 PDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKL 216
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFP 170
+EMR+ + P + + V++ G+ E +K FL P
Sbjct: 217 LDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIK--FLNNMP 256
>gi|297720523|ref|NP_001172623.1| Os01g0816000 [Oryza sativa Japonica Group]
gi|56785065|dbj|BAD82704.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125572420|gb|EAZ13935.1| hypothetical protein OsJ_03862 [Oryza sativa Japonica Group]
gi|255673815|dbj|BAH91353.1| Os01g0816000 [Oryza sativa Japonica Group]
Length = 530
Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 4/128 (3%)
Query: 24 RFIKSHVSRLLKSDLVS---VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMM 80
RF + + +K D+VS +++ F + + MKL++ + KE PD Y ++
Sbjct: 272 RFWNAMEIKGIKRDVVSYGSMISCFSKAGSLDTVMKLFNRM-KEAGVIPDRKIYNAVVYA 330
Query: 81 LARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPI 140
LA+ + V EAK + ++ + V D TF +IR + EA + ++M +P
Sbjct: 331 LAKGQCVNEAKALVRSMEEKGVAPDTATFNSLIRPLCKARQVQEARKMLDDMLGRGLSPS 390
Query: 141 SLPFRVIL 148
F +L
Sbjct: 391 VRTFHALL 398
>gi|326495232|dbj|BAJ85712.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 527
Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/104 (18%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
++++++++++ +Y P Y +L++L R+ + A+ ++ +++++ + +I
Sbjct: 157 LQVFEMLKEQPFYYPKEGTYMKLLLLLGRSGQPSLAQDLFTEMQQQGCQPTPELYTALIG 216
Query: 115 AFSDSGLPSEAMFIYNEMRSSP-ATPISLPFRVILKGLIPYPEF 157
A+ +GL EA+ + +M+++P P + +++K + P F
Sbjct: 217 AYCRNGLLDEALKLLQDMKANPLCQPDVYTYSILIKAFVDAPRF 260
>gi|297804088|ref|XP_002869928.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315764|gb|EFH46187.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 731
Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 45/99 (45%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
+E +PD+F Y M+ L + + +VW+++KR+E+ D +G ++ G
Sbjct: 294 RENLCKPDVFAYTAMIKTLVSEGNLDASLRVWDEMKRDEIKPDVMAYGTLVVGLCKDGRI 353
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKV 161
++ EM+ +RV+++G + + R
Sbjct: 354 ERGYELFMEMKGKQILIDREIYRVLIEGFVADGKVRSAC 392
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 43/90 (47%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
K+ ++P +F Y ++ L +N A V+ED K + ++ + TF +++ +G
Sbjct: 224 KKFGFKPRVFLYNRIMDALVKNGYFDLALAVYEDFKEDGLVEESTTFMILVKGLCKAGRI 283
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLI 152
E + I MR + P + ++K L+
Sbjct: 284 EEMLEILQRMRENLCKPDVFAYTAMIKTLV 313
>gi|212274517|ref|NP_001130401.1| uncharacterized protein LOC100191497 [Zea mays]
gi|194689030|gb|ACF78599.1| unknown [Zea mays]
gi|413937743|gb|AFW72294.1| hypothetical protein ZEAMMB73_720731 [Zea mays]
Length = 673
Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
KE PD+ ++ M +R K+ +AK+ ++ ++RE+ D+ F +I+ + + G P
Sbjct: 365 KEKGIAPDVIISIVLVHMYSRAGKLEQAKEAFDFIRREDFKPDRKLFSSMIKCYINHGEP 424
Query: 123 SEAMFIYNEMRSSPATP-----ISLPFRVILKGLIPYPE 156
+A + MR + P I L + +GL+ Y E
Sbjct: 425 EQAENLIKVMRDTRVKPTREIYIGLLRSYVQRGLMAYAE 463
>gi|449502417|ref|XP_004161634.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g15980-like [Cucumis sativus]
Length = 499
Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 63 KEIW-------YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
KEIW P+ + Y ++ +L K+ EA+++WE++K +++ D + II
Sbjct: 276 KEIWDQLADSNSTPNSYSYSILMTVLCEEKRTGEAEELWEEMKMKKLEPDVVAYNTIIGG 335
Query: 116 FSDSGLPSEAMFIYNEMRSS 135
F +G A Y EM S
Sbjct: 336 FCKAGHTHRAEEFYREMELS 355
>gi|42566234|ref|NP_192066.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75161629|sp|Q8VZE4.1|PP299_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g01570
gi|18086402|gb|AAL57659.1| AT4g01570/T15B16_21 [Arabidopsis thaliana]
gi|24797024|gb|AAN64524.1| At4g01570/T15B16_21 [Arabidopsis thaliana]
gi|332656643|gb|AEE82043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 805
Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
+ PD+ Y ++ +L K +A VW++LK D T+ +I+ S +AM
Sbjct: 285 FGPDICTYNSLIHVLCLFGKAKDALIVWDELKVSGHEPDNSTYRILIQGCCKSYRMDDAM 344
Query: 127 FIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
IY EM+ + P ++ + +L G + + E +LF M+
Sbjct: 345 RIYGEMQYNGFVPDTIVYNCLLDGTLKARKVTEAC-----QLFEKMV 386
>gi|10177342|dbj|BAB10598.1| unnamed protein product [Arabidopsis thaliana]
Length = 563
Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 60/124 (48%), Gaps = 10/124 (8%)
Query: 56 KLYDVVR-----KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFG 110
+L D VR K+ +P+++ Y ++ M R + A+++W+++KR +VL D+ ++
Sbjct: 392 RLSDAVRLMAKMKQRGCKPNIWIYNSLIDMHGRAMDLRRAEKIWKEMKRAKVLPDKVSYT 451
Query: 111 DIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFP 170
+I A++ S + +Y E R + I I+ G+ + D+ + L
Sbjct: 452 SMISAYNRSKELERCVELYQEFRMNRG-KIDRAMAGIMVGVFS----KTSRIDELMRLLQ 506
Query: 171 DMIV 174
DM V
Sbjct: 507 DMKV 510
>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
Length = 457
Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 54/115 (46%), Gaps = 10/115 (8%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P +F Y +L +R + + +++D+ R+ + + TF +++ F G EA +
Sbjct: 190 PTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRL 249
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPE-------FREKVKDDFLELFPDMIVYD 176
+ EMRS P + + +++G+ + RE ++ + PD++ Y+
Sbjct: 250 FLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSG---VGPDIVSYN 301
>gi|224144700|ref|XP_002325381.1| predicted protein [Populus trichocarpa]
gi|222862256|gb|EEE99762.1| predicted protein [Populus trichocarpa]
Length = 1071
Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 46/94 (48%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD F Y ++ + + K +EA++ ++++ + F ++ A +GL EA +
Sbjct: 907 PDSFTYLSLVQAYSESSKCLEAEETINAMQKKGIPPSCAHFKHLLYALVKAGLMVEAERV 966
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
Y E+ S+ P + R +L+G + Y + +K
Sbjct: 967 YMELLSAGLNPDLVCCRAMLRGYMDYGHVEKGIK 1000
>gi|118487846|gb|ABK95746.1| unknown [Populus trichocarpa]
Length = 184
Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P+++ Y +L M R K + + +++W+++KR +V D+ T+ +I A++ S +
Sbjct: 48 PNVWIYNSLLDMHGRAKNLRQVEKLWKEMKRRKVAPDKVTYSSVISAYNKSKEYEMCVRY 107
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVK--DDFLELFPDMIVYDPPED 180
Y+E R + I I+ G+ K+ D+ ++L DM P D
Sbjct: 108 YHEYRINGGV-IDGAMAGIMAGVFS------KISRIDELVKLLRDMKSEGTPID 154
>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 40.0 bits (92), Expect = 0.47, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL 97
+++ L + QR ++ + LY+ +R PD++ Y +++ L V +AK+++E+L
Sbjct: 1004 IINGLGKSQRMEEA---LALYNEMRNR-GIVPDLYTYNSLMLNLGLAGMVEQAKRMYEEL 1059
Query: 98 KREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
+ + D T+ +IR +S S P A +Y M P
Sbjct: 1060 QLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNP 1101
>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
Length = 457
Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 54/115 (46%), Gaps = 10/115 (8%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P +F Y +L +R + + +++D+ R+ + + TF +++ F G EA +
Sbjct: 190 PTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRL 249
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPE-------FREKVKDDFLELFPDMIVYD 176
+ EMRS P + + +++G+ + RE ++ + PD++ Y+
Sbjct: 250 FLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSG---VGPDIVSYN 301
>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
Length = 669
Score = 40.0 bits (92), Expect = 0.47, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 14/116 (12%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD + Y ++ +L +V +A + +D+ R + T+ ++ A + +AM +
Sbjct: 141 PDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAV 200
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELF---------PDMIVY 175
+EMR+ TP + + VI+ G+ RE DD EL PD + Y
Sbjct: 201 LDEMRAKGCTPNIVTYNVIINGMC-----REGRVDDARELLNRLPSYGFQPDTVSY 251
>gi|449455312|ref|XP_004145397.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g15980-like [Cucumis sativus]
gi|449472579|ref|XP_004153637.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g15980-like [Cucumis sativus]
Length = 499
Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 63 KEIW-------YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
KEIW P+ + Y ++ +L K+ EA+++WE++K +++ D + II
Sbjct: 276 KEIWDQLADSNSTPNSYSYSILMTVLCEEKRTGEAEELWEEMKMKKLEPDVVAYNTIIGG 335
Query: 116 FSDSGLPSEAMFIYNEMRSS 135
F +G A Y EM S
Sbjct: 336 FCKAGHTHRAEEFYREMELS 355
>gi|195649551|gb|ACG44243.1| hypothetical protein [Zea mays]
Length = 673
Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
KE PD+ ++ M +R K+ +AK+ ++ ++RE+ D+ F +I+ + + G P
Sbjct: 365 KEKGIAPDVIISIVLVHMYSRAGKLEQAKEAFDFIRREDFKPDRKLFSSMIKCYINHGEP 424
Query: 123 SEAMFIYNEMRSSPATP-----ISLPFRVILKGLIPYPE 156
+A + MR + P I L + +GL+ Y E
Sbjct: 425 EQAENLIKVMRDTRVKPTREIYIGLLRSYVQRGLMAYAE 463
>gi|297833656|ref|XP_002884710.1| hypothetical protein ARALYDRAFT_478217 [Arabidopsis lyrata subsp.
lyrata]
gi|297330550|gb|EFH60969.1| hypothetical protein ARALYDRAFT_478217 [Arabidopsis lyrata subsp.
lyrata]
Length = 942
Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 54/109 (49%)
Query: 53 LCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDI 112
+ M+L+D + ++ P++ + M+ L++ +V + ++W+ +K+ E D +T+ +
Sbjct: 266 MAMQLWDKLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWDRMKQNEREKDLYTYSSL 325
Query: 113 IRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKV 161
I D G +A ++NE+ A + + +L G + +E +
Sbjct: 326 IHGLCDEGNVDKAESVFNELVERKAFIDVVTYNTMLGGFCRCGKIKESL 374
>gi|414588908|tpg|DAA39479.1| TPA: chloroplast RNA splicing4 [Zea mays]
Length = 1438
Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query: 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123
E + PD Y +L A+ V + + E L + ++ T+ +I + G
Sbjct: 356 EKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGRLD 415
Query: 124 EAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE--KVKDDFLE--LFPDMIVYDP 177
A+ +Y+EMR+ TP ++ + V++ L E KV +D + L P +I +
Sbjct: 416 LAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSA 473
>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g31850, chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 40.0 bits (92), Expect = 0.49, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL 97
+++ L + QR ++ + LY+ +R PD++ Y +++ L V +AK+++E+L
Sbjct: 1004 IINGLGKSQRMEEA---LALYNEMRNR-GIVPDLYTYNSLMLNLGLAGMVEQAKRMYEEL 1059
Query: 98 KREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
+ + D T+ +IR +S S P A +Y M P
Sbjct: 1060 QLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNP 1101
>gi|26452823|dbj|BAC43491.1| putative salt-inducible protein [Arabidopsis thaliana]
Length = 702
Score = 40.0 bits (92), Expect = 0.49, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 54 CMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113
C+ +Y+ + K + +P++ Y ++ + R K+ +AK +++DL + T+ ++
Sbjct: 299 CLNIYEEM-KALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALV 357
Query: 114 RAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
RA+ + +A+ IY EM+ L VIL + D+ E+F DM
Sbjct: 358 RAYGRARYGDDALAIYREMKEK-----GLSLTVILYNTLLSMCADIGYVDEAFEIFQDM 411
>gi|9755842|emb|CAC01928.1| 67kD chloroplastic RNA-binding protein, P67 [Arabidopsis thaliana]
Length = 702
Score = 40.0 bits (92), Expect = 0.50, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 54 CMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113
C+ +Y+ + K + +P++ Y ++ + R K+ +AK +++DL + T+ ++
Sbjct: 299 CLNIYEEM-KALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALV 357
Query: 114 RAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
RA+ + +A+ IY EM+ L VIL + D+ E+F DM
Sbjct: 358 RAYGRARYGDDALAIYREMKEK-----GLSLTVILYNTLLSMCADIGYVDEAFEIFQDM 411
>gi|255551665|ref|XP_002516878.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543966|gb|EEF45492.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 714
Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 39 VSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWE--- 95
+S L QR D C K+Y+ + + PD M+ M+ +N + AK+ WE
Sbjct: 269 LSGLLYCQRYDDA--C-KVYEAMEAQN-VSPDHVTCSIMITMMRKNGR--SAKEAWEFFE 322
Query: 96 DLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
+ R+ V + G ++++F D GL +EA+ I EM A ++ + ++
Sbjct: 323 KMNRKGVKWSPEILGALVKSFCDEGLKNEALIIQVEMAKKGAFSNAIVYNTLM 375
>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
[Vitis vinifera]
Length = 691
Score = 40.0 bits (92), Expect = 0.50, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 64 EIWYR--------PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
EIW R P++ Y M+ L + K E+ ++W +K+ E D +T+ +I
Sbjct: 240 EIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHG 299
Query: 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
SG A +Y EM + +P + + +L G +
Sbjct: 300 LCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYL 336
Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 2/112 (1%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
++L + R ++ C++L+ V+ KE + Y ++ L N KV EA +WE L
Sbjct: 330 TMLNGYLRAGRIEECLELWKVMEKEGCR--TVVSYNILIRGLFENAKVDEAISIWELLPE 387
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
++ D T+G ++ +G ++A+ I E + + + ++ GL
Sbjct: 388 KDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGL 439
Score = 37.0 bits (84), Expect = 4.1, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 4/114 (3%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
++P+M Y ++ L + KK+ A +W + D II SG +A+
Sbjct: 530 WKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDAL 589
Query: 127 FIYNEMRSSPATPISLPFRVILKGLIPYPEFRE--KVKDDFLELF--PDMIVYD 176
+Y+EM+ P + +++G +F K+ D L+ PD+I Y+
Sbjct: 590 QLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGPQPDIISYN 643
>gi|15228903|ref|NP_188314.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274022|sp|Q9LSQ2.1|PP239_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial; AltName: Full=Protein
PENTATRICOPEPTIDE REPEAT 40; Flags: Precursor
gi|7670019|dbj|BAA94973.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|332642359|gb|AEE75880.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 659
Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 44/85 (51%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
KE PD++ Y + + +KV +A+++ + + R + D T+ +I+A S+SG
Sbjct: 557 KENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIKALSESGRE 616
Query: 123 SEAMFIYNEMRSSPATPISLPFRVI 147
SEA +++ + P S R++
Sbjct: 617 SEAREMFSSIERHGCVPDSYTKRLV 641
>gi|297839237|ref|XP_002887500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333341|gb|EFH63759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 989
Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
+K Y +RK + PD +R +L +L + K V EA+ V ++ R + D+H+ I++
Sbjct: 392 LKYYRNIRK-VGLFPDTVTHRAVLHILCQRKMVAEAEAVMAEMDRNSIRIDEHSVPVIMQ 450
Query: 115 AFSDSGLPSEAMFIY 129
+ + GL +A ++
Sbjct: 451 MYVNEGLVGQAKALF 465
>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
Length = 650
Score = 40.0 bits (92), Expect = 0.51, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 64 EIWYR--------PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
EIW R P++ Y M+ L + K E+ ++W +K+ E D +T+ +I
Sbjct: 240 EIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHG 299
Query: 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
SG A +Y EM + +P + + +L G +
Sbjct: 300 LCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYL 336
Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 2/112 (1%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
++L + R ++ C++L+ V+ KE + Y ++ L N KV EA +WE L
Sbjct: 330 TMLNGYLRAGRIEECLELWKVMEKEGCR--TVVSYNILIRGLFENAKVDEAISIWELLPE 387
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
++ D T+G ++ +G ++A+ I E + + + ++ GL
Sbjct: 388 KDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGL 439
>gi|413952776|gb|AFW85425.1| chloroplast RNA splicing4 [Zea mays]
Length = 1435
Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query: 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123
E + PD Y +L A+ V + + E L + ++ T+ +I + G
Sbjct: 356 EKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGRLD 415
Query: 124 EAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE--KVKDDFLE--LFPDMIVYDP 177
A+ +Y+EMR+ TP ++ + V++ L E KV +D + L P +I +
Sbjct: 416 LAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSA 473
>gi|413937640|gb|AFW72191.1| hypothetical protein ZEAMMB73_762171 [Zea mays]
Length = 503
Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWE-DLKREEVLFDQHTFGDIIRAFSDSGL 121
K +PD FY ++ +L R + EA QV+ ++ R VL + T+ +I G
Sbjct: 319 KSSGCKPDTLFYNALINLLGRAGHLFEANQVFRVEMPRNGVLRNVATYNTMISILCQYGR 378
Query: 122 PSEAMFIYNEMRSSPATP 139
+A+ + EM + P
Sbjct: 379 DDDALGVLKEMEAQSCKP 396
>gi|224103707|ref|XP_002313163.1| predicted protein [Populus trichocarpa]
gi|222849571|gb|EEE87118.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 40.0 bits (92), Expect = 0.52, Method: Composition-based stats.
Identities = 32/151 (21%), Positives = 67/151 (44%), Gaps = 19/151 (12%)
Query: 3 KESLMVAKELKRLQSHP--VRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+ ++ V +E++ P F+ IK H +R ++++ V E + + C+
Sbjct: 226 ESAMRVFEEMRTAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIK----ICCCV----- 276
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
PD+ + +L + +N E V++++KR + ++ T+ +I A+S G
Sbjct: 277 --------PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYSRCG 328
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+AM +Y M + TP + +L L
Sbjct: 329 SFDQAMAMYKRMLDTGITPDLSTYNAVLAAL 359
Score = 36.2 bits (82), Expect = 7.5, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Query: 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWE 95
S L +++A + R+ V ++ + + KE + P + Y ++ M ++++ +++V +
Sbjct: 455 STLNAMIAIYGRRQMVTKTNEILNFM-KESGFTPSLATYNSLMYMHSQSENFERSEEVLK 513
Query: 96 DLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYP 155
++ + + D ++ +I A+ +G EA I++EMR S P + + +
Sbjct: 514 EILAKGIKPDIISYNTVIFAYCRNGRMKEASHIFSEMRESGLIPDVITYNTFVASYAADS 573
Query: 156 EFREKV 161
F E +
Sbjct: 574 MFEEAI 579
>gi|357134934|ref|XP_003569069.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Brachypodium distachyon]
Length = 642
Score = 40.0 bits (92), Expect = 0.52, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+P++ Y +M+ +L + +A+ + + + E + TF +IR+ D G A+
Sbjct: 399 KPNVVVYTNMVDVLCKKVMFDQAENLIDKMSLENCPPNTLTFNTLIRSLCDLGRAGRALN 458
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
+++ MR P + +L GL FRE +D L + +M+
Sbjct: 459 VFHGMRRYGCPPNDRTYNELLHGL-----FREGNCEDALRMLTEML 499
>gi|242095042|ref|XP_002438011.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
gi|241916234|gb|EER89378.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
Length = 1443
Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 45/99 (45%)
Query: 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123
E + PD Y +L A+ V + + E+L + ++ T+ +I + G
Sbjct: 356 EKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKKNEITYNTMIHMYGKMGRLD 415
Query: 124 EAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
A+ +Y+EMR+ TP ++ + V++ L + E K
Sbjct: 416 LAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGK 454
>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63080, mitochondrial; Flags: Precursor
gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 614
Score = 40.0 bits (92), Expect = 0.53, Method: Composition-based stats.
Identities = 33/148 (22%), Positives = 66/148 (44%), Gaps = 13/148 (8%)
Query: 9 AKELKRLQSHPVRFDRFIKSHVSR--LLKSDLVSVLAEFQRQD---QVFLCMKLYDVVRK 63
AKE K +++ + FD I+ + + + L++ R D Q+F M D +
Sbjct: 321 AKEGKLIEAEKL-FDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCL-- 377
Query: 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123
PD+ Y ++ + KKVV+ +++ D+ R ++ + T+ +I F +
Sbjct: 378 -----PDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCD 432
Query: 124 EAMFIYNEMRSSPATPISLPFRVILKGL 151
A ++ +M S P + + +L GL
Sbjct: 433 NAQMVFKQMVSDGVHPNIMTYNTLLDGL 460
Score = 37.7 bits (86), Expect = 2.4, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
RPD+F Y ++ L + +A ++ D+ ++ + TF +I AF+ G EA
Sbjct: 272 RPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEK 331
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFL----ELFPDMIVYD 176
+++EM P + + ++ G + E + L + PD++ Y+
Sbjct: 332 LFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYN 384
>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 804
Score = 40.0 bits (92), Expect = 0.53, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 2/119 (1%)
Query: 34 LKSDLVSVLAE-FQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQ 92
+ +D +VL + + + D + ++ ++++ K+ +PD+F Y +L ++ R + V+ A
Sbjct: 124 ISADAFTVLIQAYAKMDMIEKAVESFEMM-KDFDCKPDVFTYNTVLHVMVRKEVVLLALG 182
Query: 93 VWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
++ + + L + TF +I SG A+ +++EM P + + +I+ GL
Sbjct: 183 IYNRMLKLNCLPNIATFSILIDGMCKSGKTQNALQMFDEMTQRRILPNKITYTIIISGL 241
Score = 38.1 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 55/117 (47%), Gaps = 13/117 (11%)
Query: 64 EIWYR--------PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
++WYR PD+ Y M+ L++ K +A ++ ++ ++ D H + +I+
Sbjct: 321 QVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCYNALIKG 380
Query: 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
+ D GL EA ++ E+ + + + +++ G+ R + D ++F +M
Sbjct: 381 YCDLGLLDEAKSLHLEISKNDCFSSACTYTILICGMC-----RSGLVGDAQQIFNEM 432
>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 59/129 (45%), Gaps = 6/129 (4%)
Query: 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123
E+ PD+ Y ++ + +VVEA+++++ + + D ++ +I + +
Sbjct: 213 EMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRID 272
Query: 124 EAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLEL-----FPDMIVYDPP 178
EA ++NEM +TP ++ + ++ GL RE +D F + P++ Y
Sbjct: 273 EAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLRE-AQDLFKNMHTNGNLPNLYTYAIL 331
Query: 179 EDLFEDQEW 187
D F Q +
Sbjct: 332 LDGFCKQGY 340
Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 56 KLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
KL+DV+ + +PD+F Y ++ + K++ EAKQ++ ++ + + ++ +I
Sbjct: 241 KLFDVMITK-GCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHG 299
Query: 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG 150
G EA ++ M ++ P + ++L G
Sbjct: 300 LCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDG 334
>gi|449525305|ref|XP_004169658.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29290-like [Cucumis sativus]
Length = 600
Score = 40.0 bits (92), Expect = 0.54, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 47 RQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ 106
+ +V L +Y+V+ K + + PD++ + +L L + + +A ++E +KRE+V +
Sbjct: 372 KAKEVTLAFSVYNVM-KSMGHSPDVYTWNALLGALYKANRYSDAIHLFEFVKREKVQLNI 430
Query: 107 HTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG--LIPYPEFREKVKDD 164
H + I+ + S GL A+ I EM S + + + +++ + PE +V +
Sbjct: 431 HIYNTILMSCSKLGLWERAVQILWEMEVSGLSISTSSYNIVMTACEMARKPEIALQVYER 490
Query: 165 FL--ELFPDMIVY 175
+ +L PD +
Sbjct: 491 MVHQKLTPDTFTH 503
>gi|357504477|ref|XP_003622527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355497542|gb|AES78745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 721
Score = 40.0 bits (92), Expect = 0.54, Method: Composition-based stats.
Identities = 39/183 (21%), Positives = 80/183 (43%), Gaps = 12/183 (6%)
Query: 2 SKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVV 61
S+ + AK + L ++ D + S + L K+ + L + + FL +
Sbjct: 52 SRNNSKTAKTIANLINYKPWSDELLSSFTTSLSKTTVFQTLRHIKVPTKAFLFFNW--IH 109
Query: 62 RKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE---EVLFDQHTFGDIIRAFSD 118
K + P +F ML +L R K + A+ +++ EV + F +IR++ +
Sbjct: 110 EKGFSHNPQTYFI--MLEILGREKNLNIARNFLYSIEKRSNGEVKLEDRFFNSLIRSYGE 167
Query: 119 SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIP--YPEFREKVKDDFLELF---PDMI 173
+GL E++ ++ M+ +P + F +L L+ ++V D+ L+ + PD
Sbjct: 168 AGLFKESVKLFENMKLIGVSPGVVTFNSVLLVLLKRGRTNMAKEVYDEMLKTYGVKPDTY 227
Query: 174 VYD 176
Y+
Sbjct: 228 TYN 230
>gi|302784330|ref|XP_002973937.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
gi|300158269|gb|EFJ24892.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
Length = 823
Score = 40.0 bits (92), Expect = 0.54, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 40/82 (48%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++ Y +L ++ ++ +A +V+ D+ V D TF ++ ++S GL EA+ +
Sbjct: 703 PNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSSLGLYKEALSV 762
Query: 129 YNEMRSSPATPISLPFRVILKG 150
M P + F+ +L G
Sbjct: 763 IEYMTEHGCQPTQITFKALLDG 784
>gi|296088471|emb|CBI37462.3| unnamed protein product [Vitis vinifera]
Length = 673
Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%)
Query: 66 WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEA 125
YRPD+ Y L +L NKK EA ++ + + HTF +I F + G P A
Sbjct: 511 GYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLISMFFEIGEPDGA 570
Query: 126 MFIYNEMRSSPATPISLPFRVILKGL 151
++EM + + V+++GL
Sbjct: 571 FETWHEMDKRGCARDTDTYCVMIEGL 596
>gi|225427504|ref|XP_002263624.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
mitochondrial-like [Vitis vinifera]
Length = 709
Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%)
Query: 66 WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEA 125
YRPD+ Y L +L NKK EA ++ + + HTF +I F + G P A
Sbjct: 547 GYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLISMFFEIGEPDGA 606
Query: 126 MFIYNEMRSSPATPISLPFRVILKGL 151
++EM + + V+++GL
Sbjct: 607 FETWHEMDKRGCARDTDTYCVMIEGL 632
>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Glycine max]
Length = 852
Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/120 (20%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P +F Y ++ LAR + A+ ++E++K + + D T+ +I + G+ + A+ +
Sbjct: 249 PSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSV 308
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYP------EFREKVKDDFLELFPDMIVYDPPEDLF 182
+ EM+ + P + + ++ + E+ +K L+ P+++ Y D F
Sbjct: 309 FEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQ--PNVVTYSTLIDAF 366
>gi|218194640|gb|EEC77067.1| hypothetical protein OsI_15461 [Oryza sativa Indica Group]
Length = 548
Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 12/120 (10%)
Query: 60 VVRKEIWYR-------PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDI 112
VV KE+++ + Y +L L RN EA + E L V FD TF +
Sbjct: 350 VVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIV 409
Query: 113 IRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
IRA G EA ++ + + P L +RV++ LI F +D LF M
Sbjct: 410 IRAMFKVGRMQEAKELFAAISTYGLVPTILTYRVMITNLIKEESF-----EDADNLFSSM 464
>gi|449457341|ref|XP_004146407.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
mitochondrial-like [Cucumis sativus]
gi|449523938|ref|XP_004168980.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
mitochondrial-like [Cucumis sativus]
Length = 506
Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 44/98 (44%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
++LY +R++ P + Y +L + K K++W D+K V D ++ II
Sbjct: 373 LRLYKKMREDCLCAPSLHTYNILLALFLNLDKKETLKELWNDMKESGVGPDLDSYTTIIH 432
Query: 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
+ SEA + EM P + F ++ +GLI
Sbjct: 433 GLCEKQRWSEACQFFVEMIERGFLPQKVTFEMLYRGLI 470
>gi|413915825|gb|AFW21589.1| hypothetical protein ZEAMMB73_481763 [Zea mays]
gi|413923991|gb|AFW63923.1| hypothetical protein ZEAMMB73_685382 [Zea mays]
Length = 953
Score = 39.7 bits (91), Expect = 0.55, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 41/84 (48%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD Y + L R K EAK ++++ + DQ T+ +I A G S+A+ +
Sbjct: 572 PDAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPDQATYNTMISAQCREGNTSKALKL 631
Query: 129 YNEMRSSPATPISLPFRVILKGLI 152
NEM+ S P + + ++ GL+
Sbjct: 632 LNEMKWSSIKPNLITYTTLVVGLL 655
Score = 37.0 bits (84), Expect = 4.0, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 40/82 (48%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD Y M+ R +A ++ ++K + + T+ ++ ++G+ +A ++
Sbjct: 607 PDQATYNTMISAQCREGNTSKALKLLNEMKWSSIKPNLITYTTLVVGLLEAGVVEKAKYL 666
Query: 129 YNEMRSSPATPISLPFRVILKG 150
NEM S+ TP L +R +L+
Sbjct: 667 LNEMASAGFTPTPLTYRRVLQA 688
>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62670, mitochondrial; Flags: Precursor
gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
Length = 630
Score = 39.7 bits (91), Expect = 0.55, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 62/137 (45%), Gaps = 9/137 (6%)
Query: 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWE 95
S L+S L + R L D++ ++I PD+F + ++ + K+VEA+++++
Sbjct: 295 SSLISCLCNYGRWSDA--SRLLSDMIERKI--NPDVFTFSALIDAFVKEGKLVEAEKLYD 350
Query: 96 DLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYP 155
++ + + T+ +I F EA ++ M S P + + ++KG Y
Sbjct: 351 EMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYK 410
Query: 156 EFREKVKDDFLELFPDM 172
E +E+F +M
Sbjct: 411 RVEEG-----MEVFREM 422
Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
RP++ Y ++ L + +A ++ D+ ++ D TF +I AF G EA
Sbjct: 288 RPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEK 347
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFRE-KVKDDFL---ELFPDMIVYD 176
+Y+EM P + + ++ G + E K +F+ FPD++ Y+
Sbjct: 348 LYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYN 400
>gi|357442017|ref|XP_003591286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480334|gb|AES61537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 276
Score = 39.7 bits (91), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%)
Query: 77 MLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSP 136
M L++ EA +++ +K + + D II A++++G P EA+ Y M +S
Sbjct: 116 MFDALSQQGLTHEALELFGQIKDKNQMPDVVANTAIIEAYANAGQPKEALKAYMRMLASG 175
Query: 137 ATPISLPFRVILKGLIPYPEFREKVKDDFLEL 168
P + + VI+KGL +F + K LE+
Sbjct: 176 VCPNAYTYTVIIKGLASDAKFLKDAKKYLLEM 207
>gi|302143409|emb|CBI21970.3| unnamed protein product [Vitis vinifera]
Length = 375
Score = 39.7 bits (91), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 57 LYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116
L D+++ + Y+P + ++ L K+ EA Q+++ + E D T+G +I
Sbjct: 68 LGDILK--LGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGL 125
Query: 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
+EA+ ++++M + +P + + ++ GL ++E ++
Sbjct: 126 CKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIR 171
>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
Length = 609
Score = 39.7 bits (91), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 44/100 (44%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
K+I PD++ Y ++ L R + EA ++ D ++ I+ + +G P
Sbjct: 474 KKIGCNPDVYAYNALMSGLVRAGMIEEAFSALRTMEENGCTPDLNSHNIILNGLARTGRP 533
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
+A ++ +M+ S P ++ + IL L F E K
Sbjct: 534 EQATEMFMKMKDSLIKPDAVSYNTILGSLSRSGMFEEAAK 573
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 4/122 (3%)
Query: 31 SRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEA 90
S S L+ + R ++ L ++ D E + P Y ++ L + K+ A
Sbjct: 376 SSFTYSILIDGFCKTNRVEKALLLLEEMD----EKGFPPCPAAYCSLINALGKAKRYEAA 431
Query: 91 KQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG 150
+++ +LK + +I+ G PSEA+ ++NEM+ P + ++ G
Sbjct: 432 NELFLELKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSG 491
Query: 151 LI 152
L+
Sbjct: 492 LV 493
>gi|147782978|emb|CAN70810.1| hypothetical protein VITISV_034914 [Vitis vinifera]
Length = 708
Score = 39.7 bits (91), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
YRPD+ Y L +L NKK EA ++ + + HTF +I F + G P A
Sbjct: 521 YRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLISMFFEIGEPDGAF 580
Query: 127 FIYNEMRSSPATPISLPFRVILKGL 151
++EM + + V+++GL
Sbjct: 581 ETWHEMDKRGCARDTDTYCVMIEGL 605
>gi|308813023|ref|XP_003083818.1| FOG: PPR repeat (ISS) [Ostreococcus tauri]
gi|116055700|emb|CAL57785.1| FOG: PPR repeat (ISS) [Ostreococcus tauri]
Length = 725
Score = 39.7 bits (91), Expect = 0.55, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 17/123 (13%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF---SDSGLPSE 124
RP + Y ++ L+R+ +++EA +V + R+ V + +T+ +I F S GL
Sbjct: 314 RPGVQAYTSLVQGLSRSGRLIEADEVLRRMSRDGVKPNVYTYSTLIDGFVRASQIGLAET 373
Query: 125 AMFIYNEMRSSPATPISLPFRVILKGLIP--------YPEFREKVKDDFLELFPDMIVYD 176
A+ EMR + P + + +LKG++ E + KD F + D I
Sbjct: 374 AL---EEMRRAKIKPNVVTYNSLLKGVLSGAGGPAARTDEMLSRAKDVFERMRADGI--- 427
Query: 177 PPE 179
PP+
Sbjct: 428 PPD 430
>gi|224087130|ref|XP_002308078.1| predicted protein [Populus trichocarpa]
gi|222854054|gb|EEE91601.1| predicted protein [Populus trichocarpa]
Length = 373
Score = 39.7 bits (91), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 59/125 (47%), Gaps = 3/125 (2%)
Query: 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL 97
++ + ++ D FL ++ +RK I RP + Y ++ + + A V++ +
Sbjct: 45 CINAYCKARKLDDAFL---AFECMRKLIDGRPSVVVYNILINGCVKCGEHDRAIGVYDRM 101
Query: 98 KREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEF 157
++ V D TF +I ++ + + A+ ++ EM+ +P + F ++KG +F
Sbjct: 102 LKDRVKPDVFTFNILISSYCRNYMFELALELFREMKEKGCSPNVVSFNTLIKGFFRERKF 161
Query: 158 REKVK 162
E VK
Sbjct: 162 EEGVK 166
>gi|356517404|ref|XP_003527377.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Glycine max]
Length = 696
Score = 39.7 bits (91), Expect = 0.57, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Query: 22 FDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMML 81
++ F+ S L +++ R V + L +R++ Y+PD Y ++ L
Sbjct: 172 YEAFLLSQRQVLTPLTYNALIGACARNGDVEKALNLMSKMRRD-GYQPDFVNYSSIIQYL 230
Query: 82 ARNKKVVEA--KQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
R+ K+ ++++ +++ +++ D H DII FS +G P+ AM +S+ P
Sbjct: 231 TRSNKIDSPILQKLYTEIETDKIEIDGHLMNDIILGFSKAGDPTRAMRFLAMAQSNGLNP 290
>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g16710, mitochondrial; Flags: Precursor
gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 507
Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 77/160 (48%), Gaps = 22/160 (13%)
Query: 13 KRLQSHPVRF----DRFIKSHVSRLLKS-DLVSVLAEFQRQDQVF--------LCM-KLY 58
+R++ + + F D F+K V +L+++ +L +V+ + VF LCM L
Sbjct: 252 RRIEPNVITFTALIDAFVK--VGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLL 309
Query: 59 DVVRKEIW------YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDI 112
D R+ + P+ Y ++ ++K+V + +++ ++ ++ V+ + T+ +
Sbjct: 310 DEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVL 369
Query: 113 IRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
I+ + G P A ++N+M S A P + V+L GL
Sbjct: 370 IQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLC 409
>gi|91806021|gb|ABE65739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 450
Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123
++ PD+ + ++ + R K+V E Q+ ++ R ++ + T+ +I F + +
Sbjct: 209 DLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLN 268
Query: 124 EAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELF 169
A ++ EM S P ++ ++L G + E LELF
Sbjct: 269 AAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEA-----LELF 309
>gi|449447683|ref|XP_004141597.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29290-like [Cucumis sativus]
Length = 600
Score = 39.7 bits (91), Expect = 0.58, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 47 RQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ 106
+ +V L +Y+V+ K + + PD++ + +L L + + +A ++E +KRE+V +
Sbjct: 372 KAKEVTLAFSVYNVM-KSMGHSPDVYTWNALLGALYKANRYSDAIHLFEFVKREKVQLNI 430
Query: 107 HTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
H + I+ + S GL A+ I EM S + + + +++
Sbjct: 431 HIYNTILMSCSKLGLWERAVQILWEMEVSGLSISTSSYNIVM 472
>gi|168039319|ref|XP_001772145.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676476|gb|EDQ62958.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 313
Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/122 (18%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 32 RLLKSDLVS---VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVV 88
R +K VS ++ + R ++ ++L++ ++ + +P + Y ++ M +R
Sbjct: 45 RGIKKTAVSYNALIHSYGRNNEPQKALQLFEYMKVTVDCQPTLVTYNTLISMYSRMGATE 104
Query: 89 EAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
E K+++ D E + D+HT+ +I + +G +E +NE+++ + + ++
Sbjct: 105 EMKKIFLDCTEAEFVPDRHTYNALIWGYMRAGQLNEMEVTFNELQAKKFNADVITYNALI 164
Query: 149 KG 150
G
Sbjct: 165 IG 166
>gi|125579821|gb|EAZ20967.1| hypothetical protein OsJ_36620 [Oryza sativa Japonica Group]
Length = 408
Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD F Y ++ R++ + +A++++E ++ + V D + +I+ + G+ SEA+
Sbjct: 182 QPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVCPDIVSCNAMIKGYCQFGMMSEAIL 241
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
+ MR P + ++ G Y + +E D LF +M
Sbjct: 242 CMSNMRKVGCIPDEFTYTTVISG---YAK-QEGDTDSAEGLFANM 282
>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
Length = 791
Score = 39.7 bits (91), Expect = 0.60, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 41/83 (49%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+ Y ++ L + + + +A +V + + V+ D T+ I+ + SG P EA+
Sbjct: 229 PDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGF 288
Query: 129 YNEMRSSPATPISLPFRVILKGL 151
+MRS P + + +++ L
Sbjct: 289 LKKMRSDGVEPDVVTYSLLMDYL 311
Score = 36.6 bits (83), Expect = 5.1, Method: Composition-based stats.
Identities = 22/98 (22%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 54 CM---KLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFG 110
CM K++D + K +P++ Y +L A +VE + + + R + D + F
Sbjct: 317 CMEARKIFDSMTKR-GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFS 375
Query: 111 DIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
+I A+++ G +AM ++++MR P ++ + ++
Sbjct: 376 ILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVI 413
>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
restorer; AltName: Full=Protein PPR; AltName:
Full=Restorer for CMS; Flags: Precursor
gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
Length = 791
Score = 39.7 bits (91), Expect = 0.60, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 41/83 (49%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+ Y ++ L + + + +A +V + + V+ D T+ I+ + SG P EA+
Sbjct: 229 PDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGF 288
Query: 129 YNEMRSSPATPISLPFRVILKGL 151
+MRS P + + +++ L
Sbjct: 289 LKKMRSDGVEPDVVTYSLLMDYL 311
Score = 35.8 bits (81), Expect = 9.1, Method: Composition-based stats.
Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 54 CM---KLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFG 110
CM K++D + K +P++ Y +L A +VE + + + R + D + F
Sbjct: 317 CMEARKIFDSMTKR-GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFS 375
Query: 111 DIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
+I A++ G +AM ++++MR P ++ + ++
Sbjct: 376 ILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVI 413
>gi|255569134|ref|XP_002525536.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535215|gb|EEF36894.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 430
Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 73 FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEM 132
+Y ++ L R A+ + +++ +E HT+ II + +G ++A ++ EM
Sbjct: 226 YYNVLIRELCRRGDFKAARDLMDEIGKEGCNPSAHTYNYIISSLLKNGKNADACEVFQEM 285
Query: 133 RSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174
+ + P +L F + + Y E D+ E F DM+
Sbjct: 286 QDNDCPPDALTFEIFI-----YNSCNEGKLDNAFEFFDDMVA 322
>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
Length = 782
Score = 39.7 bits (91), Expect = 0.60, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
S++ ++ +V KL+D++ + I +PD+ Y ++ K+ EA ++ +
Sbjct: 486 SIIDSHCKEGRVIESEKLFDLMVR-IGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVS 544
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
V D T+G +I + +A+ ++ EM SS +P + + +IL+GL
Sbjct: 545 VGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGL 596
Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 35/71 (49%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+ Y ++ L + + + +A +V + + V+ D T+ I+ + SG P EA+
Sbjct: 234 PDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGT 293
Query: 129 YNEMRSSPATP 139
+MRS P
Sbjct: 294 LKKMRSDGVEP 304
Score = 38.1 bits (87), Expect = 2.0, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 56 KLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
K++D + K PD+ YR +L A +VE + + + R + D H F +I A
Sbjct: 327 KIFDSMTKR-GLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICA 385
Query: 116 FSDSGLPSEAMFIYNEMRSSPATP 139
++ +AM ++++MR P
Sbjct: 386 YAKQEKVDQAMLVFSKMRQHGLNP 409
>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
Group]
Length = 878
Score = 39.7 bits (91), Expect = 0.60, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
S++ ++ +V KL+D++ + I +PD+ Y ++ K+ EA ++ +
Sbjct: 486 SIIDSHCKEGRVIESEKLFDLMVR-IGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVS 544
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
V D T+G +I + +A+ ++ EM SS +P + + +IL+GL
Sbjct: 545 VGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGL 596
Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 35/71 (49%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+ Y ++ L + + + +A +V + + V+ D T+ I+ + SG P EA+
Sbjct: 234 PDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGT 293
Query: 129 YNEMRSSPATP 139
+MRS P
Sbjct: 294 LKKMRSDGVEP 304
Score = 38.1 bits (87), Expect = 2.0, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 56 KLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
K++D + K PD+ YR +L A +VE + + + R + D H F +I A
Sbjct: 327 KIFDSMTKR-GLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICA 385
Query: 116 FSDSGLPSEAMFIYNEMRSSPATP 139
++ +AM ++++MR P
Sbjct: 386 YAKQEKVDQAMLVFSKMRQHGLNP 409
>gi|449441065|ref|XP_004138304.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61370,
mitochondrial-like [Cucumis sativus]
gi|449477571|ref|XP_004155060.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61370,
mitochondrial-like [Cucumis sativus]
Length = 487
Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 73 FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD-------SGLPSEA 125
YR +L + K EA+++ +++K + + D + ++ + SGL E+
Sbjct: 223 IYRSLLYGWSIKKNTKEARRILKEMKSDGTMPDLFCYNTFLKCLCEKNVEKNPSGLVPES 282
Query: 126 MFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELF------PDMIVY 175
+ + EMRS +P S+ + ++L L +E K LE+ PD + Y
Sbjct: 283 LNVMMEMRSYKISPNSISYNILLSCLCKTRRVKESCK--ILEMMKRTGCQPDCVSY 336
>gi|147840993|emb|CAN64120.1| hypothetical protein VITISV_037241 [Vitis vinifera]
Length = 418
Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 13/155 (8%)
Query: 6 LMVAKELKR-LQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKE 64
L +A ELK+ + ++ +R D I S L++ L + R+D+VF+ ++ +E
Sbjct: 235 LSLAFELKKEMVANKLRLDSGIYS--------TLIAALFKVGRKDEVFVVLEEM----RE 282
Query: 65 IWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSE 124
+PD Y M+ K A V E++ + D ++ II G E
Sbjct: 283 NGCKPDTVTYNAMISGFCNEKDFEAAYGVLEEMVVKGCKPDVISYNVIISGLCKEGKWRE 342
Query: 125 AMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
A ++ +M TP +R++ GL +F E
Sbjct: 343 ANDLFEDMPRRGCTPDVGSYRILFDGLCEGMQFNE 377
>gi|224130680|ref|XP_002320901.1| predicted protein [Populus trichocarpa]
gi|222861674|gb|EEE99216.1| predicted protein [Populus trichocarpa]
Length = 475
Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 41/94 (43%)
Query: 66 WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEA 125
Y PD Y +L L R KK+ EA ++ +K + D + +I F G +A
Sbjct: 271 GYVPDALSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIIHYNTVILGFCREGRAMDA 330
Query: 126 MFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
+ +M S+ P + +R ++ GL F E
Sbjct: 331 CKVLEDMESNGCMPNLVSYRTLVGGLCDQGMFDE 364
>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 634
Score = 39.7 bits (91), Expect = 0.62, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 56 KLYDVVRKEI--WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113
K Y+V+R+ + + PD Y ++ L KV +A Q+++++KR + D +T+ ++
Sbjct: 105 KAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLL 164
Query: 114 RAFSDSGLPSEAMFIYNEMRSSPATP 139
F GL +A ++EM+ P
Sbjct: 165 DRFCKVGLIEQARNWFDEMQQDGCAP 190
>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
Length = 668
Score = 39.7 bits (91), Expect = 0.62, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD + Y ++ +L +V +A + +D+ R + T+ ++ A + +AM +
Sbjct: 140 PDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAMAV 199
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVY 175
+EMR+ TP + + VI+ G+ RE DD +L + Y
Sbjct: 200 LDEMRAKGCTPNIVTYNVIINGMC-----REGRVDDARDLLNRLFSY 241
>gi|240255563|ref|NP_190542.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546755|sp|P0C8A0.1|PP275_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49730
gi|332645062|gb|AEE78583.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 638
Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++ ++ +L R K++EAK+V +K + D F +++ ++ +G ++A +
Sbjct: 234 PNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDL 293
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPEDL 181
N+MR P + V+++ L EK D+ + +F +M Y D+
Sbjct: 294 MNDMRKRGFEPNVNCYTVLIQALCR----TEKRMDEAMRVFVEMERYGCEADI 342
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100
++ ++++Q C++L + +++ + PD+ Y ++ + + +V EA ++W +++
Sbjct: 383 IMVAHEKKEQFEECLELIEKMKRRGCH-PDLLIYNVVIRLACKLGEVKEAVRLWNEMEAN 441
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREK 160
+ TF +I F+ G EA + EM S S P LK L+
Sbjct: 442 GLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGI--FSAPQYGTLKSLL-----NNL 494
Query: 161 VKDDFLELFPDM 172
V+DD LE+ D+
Sbjct: 495 VRDDKLEMAKDV 506
>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Glycine max]
Length = 583
Score = 39.7 bits (91), Expect = 0.64, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+P++ + ++ + K + EA+++++D+ ++++ + TF +I AF +G+ E
Sbjct: 340 KPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFA 399
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFR--EKVKDDF--LELFPDMIVYD 176
++N M P + ++ GL R +K+ ++ EL D++ Y+
Sbjct: 400 LHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYN 452
>gi|356508736|ref|XP_003523110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Glycine max]
Length = 680
Score = 39.7 bits (91), Expect = 0.64, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Query: 22 FDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMML 81
++ F+ S L +++ R V + L +R++ Y+PD Y ++ L
Sbjct: 156 YEAFLLSQRQVLTPLTYNALIGACARNGDVEKALNLMSKMRRD-GYQPDFVNYSSIIQYL 214
Query: 82 ARNKKVVEA--KQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
R+ K+ ++++ +++ +++ D H DII FS +G P+ AM +S+ P
Sbjct: 215 TRSNKIDSPILQKLYAEIETDKIEIDGHLMNDIIVGFSKAGDPTRAMRFLAMAQSNGLNP 274
>gi|242038757|ref|XP_002466773.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
gi|241920627|gb|EER93771.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
Length = 487
Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 7/112 (6%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD Y M+ M N K+ A +VW+ ++ ++ L HTF +I D G S+A
Sbjct: 378 KPDSDTYTMMIKMFCENDKIEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACV 437
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKD--DFLELFPDMIVYDP 177
+ +M P F G + +E KD DFL M++ +P
Sbjct: 438 LLEDMIEKGIRPPGSTF-----GKLRQLLLKEGRKDVLDFLVEKMKMLIQEP 484
>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 915
Score = 39.7 bits (91), Expect = 0.64, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD + Y M+ L ++K+V EA +++ L+++ V + + +I + +G EA +
Sbjct: 495 PDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLM 554
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
+M S P SL F ++ GL + +E
Sbjct: 555 LEKMLSKNCLPNSLTFNALIHGLCADGKLKE 585
>gi|15226343|ref|NP_178283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216739|sp|Q9ZUA2.1|PP141_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g01740
gi|4220475|gb|AAD12698.1| hypothetical protein [Arabidopsis thaliana]
gi|330250397|gb|AEC05491.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%)
Query: 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123
E PD F Y + L + +V+A ++ + +E +L D + +I + GL
Sbjct: 431 EAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTRMVQEGLLLDLLAYTTLIYGLASKGLMV 490
Query: 124 EAMFIYNEMRSSPATPISLPFRVILK 149
EA +++EM +S +P S F ++++
Sbjct: 491 EARQVFDEMLNSGISPDSAVFDLLIR 516
>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 612
Score = 39.7 bits (91), Expect = 0.65, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 67/135 (49%), Gaps = 8/135 (5%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
S+L + QV + L ++ E +PDM+ Y ++ L + ++ +A+ ++EDL
Sbjct: 411 SILDALCKNHQVDKAIALLTKMKDE-GIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLV 469
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
+ +T+ +I+ F D+ L +A+ + ++M + P + + +I+ L E
Sbjct: 470 KGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLF------E 523
Query: 160 KVKDDFLE-LFPDMI 173
K ++D E L +MI
Sbjct: 524 KDENDMAEKLLREMI 538
>gi|326533124|dbj|BAJ93534.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326534390|dbj|BAJ89545.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 837
Score = 39.7 bits (91), Expect = 0.65, Method: Composition-based stats.
Identities = 35/155 (22%), Positives = 67/155 (43%), Gaps = 13/155 (8%)
Query: 8 VAKELKRLQSHPVRFDRFIKSHVSRL-LKSDLVSV---------LAEFQRQDQVFLCMKL 57
V L +H + ++ + H+ +L ++ DL S EF +++ MK
Sbjct: 309 VFNSLMNANAHSMSYNFSVYKHMQKLGVRPDLASYNILLKTCCNAREFNTAQEIYEEMKK 368
Query: 58 YDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117
+ + + D+F Y M+ + A K A + +D++ + T+ +I A++
Sbjct: 369 KE---NDGILKLDVFTYSTMMKVFAEAKMWKMASNIKDDMRAVGARLNLVTWSSLINAYA 425
Query: 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
+SGL A+ I EM P + F +IL L+
Sbjct: 426 NSGLIDGAIEILEEMIRDGCQPTAPCFNIILTALV 460
>gi|302757529|ref|XP_002962188.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
gi|300170847|gb|EFJ37448.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
Length = 535
Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD F Y ++ LA KV A ++ E++ + + D HT+G +++ S + + A +
Sbjct: 456 PDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLVQILCRSDVDA-AWDL 514
Query: 129 YNEMRSSPATPISLPFRVILK 149
EM + TP F+ + K
Sbjct: 515 LQEMMRNGHTPNEFTFKAVEK 535
>gi|218196744|gb|EEC79171.1| hypothetical protein OsI_19856 [Oryza sativa Indica Group]
Length = 633
Score = 39.7 bits (91), Expect = 0.65, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 16/129 (12%)
Query: 58 YDVVRKEIWY-----RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDI 112
Y+VVR W PD+ Y ++ L +V EA V + + E + HT+ I
Sbjct: 238 YEVVR---WMVANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPI 294
Query: 113 IRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLE----- 167
+ A+ G EA + N M +S P + + V+++ L F E D LE
Sbjct: 295 VHAYCTGGRIHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEE--VDALLEESTAK 352
Query: 168 -LFPDMIVY 175
PD+I Y
Sbjct: 353 GWTPDVITY 361
>gi|30679784|ref|NP_195903.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332278227|sp|Q8GYL7.3|PP361_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g02830, chloroplastic; Flags: Precursor
gi|332003140|gb|AED90523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 852
Score = 39.7 bits (91), Expect = 0.66, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 43/83 (51%)
Query: 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIY 129
D F Y ++ + A K A +V +D+K V + HT+ +I A +++GL +A ++
Sbjct: 373 DAFTYCTIIKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAGLVEQANHLF 432
Query: 130 NEMRSSPATPISLPFRVILKGLI 152
EM +S P S F ++L +
Sbjct: 433 EEMLASGCEPNSQCFNILLHACV 455
>gi|115458614|ref|NP_001052907.1| Os04g0446100 [Oryza sativa Japonica Group]
gi|38344550|emb|CAD40961.2| OSJNBa0027P08.18 [Oryza sativa Japonica Group]
gi|113564478|dbj|BAF14821.1| Os04g0446100 [Oryza sativa Japonica Group]
Length = 583
Score = 39.7 bits (91), Expect = 0.66, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 8/133 (6%)
Query: 22 FDRFIKSHVSRLLKSDLVS---VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDML 78
F+R+I+ R+ D+ S V+ R QV ++L + + E PD + ++
Sbjct: 238 FERWIQD---RVYSPDVWSFNVVIKGVCRVGQVQKALELVERM-NEFGCSPDTVTHNILV 293
Query: 79 MMLARNKKVVEAKQVWEDLKREEVLF-DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPA 137
L R +V +V L+R+ V + TF +I + +G +AM +YN+M +S
Sbjct: 294 DGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGI 353
Query: 138 TPISLPFRVILKG 150
P ++ + V++ G
Sbjct: 354 MPNTVTYNVLING 366
>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1163
Score = 39.7 bits (91), Expect = 0.67, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 15/142 (10%)
Query: 12 LKRLQSHPVRF-DRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD 70
+KR + V+ DRF S + K+ L FQ QVF MK V P
Sbjct: 144 IKRRSNGTVKLEDRFFNSLIRSYGKAGL------FQESVQVFNSMKSVGV-------SPS 190
Query: 71 MFFYRDMLMMLARNKKVVEAKQVWED-LKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIY 129
+ + +L++L + + A+ V+++ L V D +TF +IR F + + E +
Sbjct: 191 VVTFNSLLLILLKRGRTNMAQSVFDEMLSTYGVTPDTYTFNILIRGFCKNSMVDEGFRFF 250
Query: 130 NEMRSSPATPISLPFRVILKGL 151
EM P + + ++ GL
Sbjct: 251 KEMSRFKCDPDLVTYNTLVDGL 272
>gi|392569108|gb|EIW62282.1| hypothetical protein TRAVEDRAFT_45113 [Trametes versicolor
FP-101664 SS1]
Length = 1217
Score = 39.7 bits (91), Expect = 0.67, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++F Y ++ LA+ +K A +++D+K V T+G +I A G + A +
Sbjct: 865 PNIFLYNTVISKLAKARKADFALHLFQDMKARNVQPTSVTYGAVIAACCRVGDAASAELL 924
Query: 129 YNEMRSSPA-TPISLPFRVILKGLIPYPEFREKV 161
+ EM S P P P+ +++ RE+V
Sbjct: 925 FQEMTSEPTFKPRVPPYNTMMQLYTHTKPDRERV 958
>gi|255548349|ref|XP_002515231.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545711|gb|EEF47215.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 505
Score = 39.7 bits (91), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 45/88 (51%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
+E+ +PD+ Y ++ + +++++ +A +V E ++ E++ D T+ II G P
Sbjct: 234 RELGIKPDVVSYNSLIDVYCKDREMEKAYKVVEKMREEDISPDVITYTSIIGGLGLVGQP 293
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKG 150
+A I NEM+ P + +++
Sbjct: 294 DKARDILNEMKEYGCYPDVAAYNAVIRN 321
>gi|39104565|dbj|BAC42187.2| unknown protein [Arabidopsis thaliana]
Length = 852
Score = 39.7 bits (91), Expect = 0.68, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 43/83 (51%)
Query: 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIY 129
D F Y ++ + A K A +V +D+K V + HT+ +I A +++GL +A ++
Sbjct: 373 DAFTYCTIIKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAGLVEQANHLF 432
Query: 130 NEMRSSPATPISLPFRVILKGLI 152
EM +S P S F ++L +
Sbjct: 433 EEMLASGCEPNSQCFNILLHACV 455
>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 807
Score = 39.7 bits (91), Expect = 0.68, Method: Composition-based stats.
Identities = 23/107 (21%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
++ ++ Y +L A +V+ ++ + R+ ++ +QH F ++ ++ G+ EAM
Sbjct: 347 HKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAM 406
Query: 127 FIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
FI+ +M+ P L + ++ R DD ++ F MI
Sbjct: 407 FIFEDMQKRGLNPDVLTYLAVIHAFC-----RMGSMDDAMDKFNHMI 448
>gi|7413558|emb|CAB86037.1| putative protein [Arabidopsis thaliana]
Length = 798
Score = 39.7 bits (91), Expect = 0.68, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 43/83 (51%)
Query: 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIY 129
D F Y ++ + A K A +V +D+K V + HT+ +I A +++GL +A ++
Sbjct: 359 DAFTYCTIIKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAGLVEQANHLF 418
Query: 130 NEMRSSPATPISLPFRVILKGLI 152
EM +S P S F ++L +
Sbjct: 419 EEMLASGCEPNSQCFNILLHACV 441
>gi|224109914|ref|XP_002333182.1| predicted protein [Populus trichocarpa]
gi|222835036|gb|EEE73485.1| predicted protein [Populus trichocarpa]
Length = 319
Score = 39.7 bits (91), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/148 (19%), Positives = 72/148 (48%), Gaps = 24/148 (16%)
Query: 40 SVLAEFQRQDQVFLCMKLYD--VVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL 97
S++ + Q++VF K+++ + R I PD+ Y ++ + +++ EAKQ+++++
Sbjct: 50 SLMNGYLLQNRVFEARKVFNAMITRGCI---PDVLSYNILINGCCKAQRIDEAKQIFDEM 106
Query: 98 KREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEF 157
++ + T+ ++ G + + ++ +M + +P + + + L GL
Sbjct: 107 SFRGLIPNTATYNTLL-----GGFWKQKIQLFKDMHAQGCSPDLVTYSIFLHGL-----S 156
Query: 158 REKVKDDFLELF---------PDMIVYD 176
++ D LELF PD+++Y+
Sbjct: 157 KQGYLDQALELFREMQNNYLNPDLVIYN 184
>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic [Vitis vinifera]
gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
Length = 1113
Score = 39.7 bits (91), Expect = 0.68, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 47 RQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ 106
R +V + L+D +R PD++ Y +++ L V EA +++E+L+ + + +
Sbjct: 1010 RSQRVEEALSLFDEMRNR-GITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNV 1068
Query: 107 HTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
T+ +IR S SG P A +Y +M P
Sbjct: 1069 FTYNALIRGHSMSGNPDRAYAVYKKMMVGGCRP 1101
>gi|356565115|ref|XP_003550790.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61370,
mitochondrial-like [Glycine max]
Length = 451
Score = 39.7 bits (91), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 13/111 (11%)
Query: 65 IWYRPDMF------FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118
+W+ D YR +L + + V EA+++ +++K V+ D + +R +
Sbjct: 166 VWHHNDKITGTKPCIYRSLLYGWSVQRNVKEARRIIKEMKSNGVIPDLLCYNTFLRCLCE 225
Query: 119 -------SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
SGL EA+ + EM+S P S+ + ++L L +E +
Sbjct: 226 RNLRHNPSGLVPEALNVMMEMKSHNVFPTSISYNILLSCLGKTRRVKESCQ 276
>gi|357154512|ref|XP_003576808.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Brachypodium distachyon]
Length = 801
Score = 39.7 bits (91), Expect = 0.70, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 13/140 (9%)
Query: 21 RFDRFIKSHVSRLLKSD---------LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDM 71
RFD + + L KS L+ AE R FL L D + K+ + PD
Sbjct: 334 RFDEGLSYYTEMLGKSISPDITLYTILIRRFAEAGRTKDAFL---LLDEM-KDKGFVPDT 389
Query: 72 FFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNE 131
F Y +L L + A+ + ++ + V+ D T +I GL +AM +++E
Sbjct: 390 FCYNTLLKALFDVGNIDRAQSLMSEMLQNNVVLDSTTHNIMICGLCKKGLIDKAMQVFDE 449
Query: 132 MRSSPATPISLPFRVILKGL 151
M P + + ++ GL
Sbjct: 450 MGEHGCHPTVMTYNALIDGL 469
>gi|297800482|ref|XP_002868125.1| hypothetical protein ARALYDRAFT_915089 [Arabidopsis lyrata subsp.
lyrata]
gi|297313961|gb|EFH44384.1| hypothetical protein ARALYDRAFT_915089 [Arabidopsis lyrata subsp.
lyrata]
Length = 429
Score = 39.7 bits (91), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 74 YRDMLMMLARNKKVVEAKQVWEDLKREE-VLFDQHTFGDIIRAFSDSGLPSEAMFIYNEM 132
Y++++ L +N ++ EA+ V+++L +EE V D T+ +IRA+ +SG EA+ N+M
Sbjct: 341 YKNLITRLCQNGRLSEAESVFDELLKEEFVKPDDETYKAMIRAYVESGRVEEAVQTANKM 400
Query: 133 RSS 135
+S
Sbjct: 401 VAS 403
>gi|224104097|ref|XP_002313317.1| predicted protein [Populus trichocarpa]
gi|222849725|gb|EEE87272.1| predicted protein [Populus trichocarpa]
Length = 474
Score = 39.7 bits (91), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 47 RQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ 106
+++Q +K+++++RK+ WY P Y +LMML + ++ E ++E + + +
Sbjct: 91 KENQWESALKIFELLRKQHWYEPRTKTYTKLLMMLGKCRQPEEGSFLFEVMLSDGLKPTI 150
Query: 107 HTFGDIIRAFSDSGLPSEAMFIYNEMRS-SPATPISLPFRVILKGLIPYPEF 157
+ ++ A+ SG +A I EM++ S P + +++ I F
Sbjct: 151 DVYTALVSAYGKSGQLDKAFSIVVEMKAISECKPDVYTYSILINCCIKLHRF 202
>gi|359495626|ref|XP_002269600.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic [Vitis vinifera]
Length = 701
Score = 39.7 bits (91), Expect = 0.71, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 54 CMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113
C+ +Y+ + K + +P++ Y +L + R K+ +AK +++++ + T+ ++
Sbjct: 300 CLNVYEEM-KALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTYAALL 358
Query: 114 RAFSDSGLPSEAMFIYNEMR 133
RA+ + +A+ +Y EM+
Sbjct: 359 RAYGRARYAEDALIVYKEMK 378
>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
[Vitis vinifera]
Length = 811
Score = 39.3 bits (90), Expect = 0.72, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 65/151 (43%), Gaps = 19/151 (12%)
Query: 3 KESLMVAKELKRLQSHP--VRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
K ++ + +E++ P F+ IK H +R ++++ V + + F C
Sbjct: 393 KAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIK----TFQC------ 442
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
PD+ + +L + +N E V++++KR + ++ TF +I ++S G
Sbjct: 443 -------SPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCG 495
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+AM +Y M + P + +L L
Sbjct: 496 SFDQAMAVYKRMLEAGVNPDLSSYNAVLAAL 526
Score = 37.7 bits (86), Expect = 2.5, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 58/113 (51%), Gaps = 4/113 (3%)
Query: 30 VSRLLKSDL---VSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKK 86
V + +K D+ ++L+ F++ + +++++ +R E +P++ + ++ M K
Sbjct: 368 VEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNE-GCKPNICTFNALIKMHGNRGK 426
Query: 87 VVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
E +V+ED+K + D T+ ++ F +G+ SE ++ EM+ + P
Sbjct: 427 FTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVP 479
>gi|413924746|gb|AFW64678.1| hypothetical protein ZEAMMB73_926861 [Zea mays]
Length = 655
Score = 39.3 bits (90), Expect = 0.74, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 16/121 (13%)
Query: 13 KRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMF 72
K + S+ + D I +H+S S L+S+ A + + KLY+ + R D+
Sbjct: 271 KAIHSYMLVSDMIIGAHIS----SALISLYASCANME---MAEKLYNEMP-----RKDLV 318
Query: 73 FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEM 132
M+ ARN+KV A+ +++ + ++V+ ++ +I + DS P+EA+ ++N M
Sbjct: 319 SSTAMVSGYARNRKVEIARSIFDGMPEKDVV----SWSAMISGYVDSNQPNEALSLFNGM 374
Query: 133 R 133
+
Sbjct: 375 Q 375
>gi|147843358|emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera]
Length = 714
Score = 39.3 bits (90), Expect = 0.74, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++F Y ++ + ++ EAK+V++++K + D + +I F +G EAM +
Sbjct: 348 PNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMEL 407
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVY 175
+M + ++ F VIL GL F E LE P VY
Sbjct: 408 LKDMXENKCRADTVTFNVILGGLCREGRFEEAX--GMLERLPYEGVY 452
>gi|291000166|ref|XP_002682650.1| predicted protein [Naegleria gruberi]
gi|284096278|gb|EFC49906.1| predicted protein [Naegleria gruberi]
Length = 822
Score = 39.3 bits (90), Expect = 0.74, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 45 FQRQDQVFLCMKLYD--VVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREE 101
+ R Q +L+D V +K+ P + Y +ML A++ K EA+++++++ ++
Sbjct: 484 YSRVGQKETAQQLFDNLVRKKDESKEPLSIVTYTNMLSCYAQHGKGYEAQKLFDEIVEKK 543
Query: 102 VLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133
V D+ T ++ A+S G+ EA+ +YN+M+
Sbjct: 544 VKIDEITLIVLLNAYSHCGMVEEAIQLYNDMK 575
>gi|357436823|ref|XP_003588687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477735|gb|AES58938.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 587
Score = 39.3 bits (90), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 6/125 (4%)
Query: 58 YDVVRKE--IWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
Y + RKE + + P + Y ML R +K+ A+++WE++K E V T+G ++
Sbjct: 239 YLLRRKETDLGWVPSIRVYNIMLNGWFRARKLKHAERLWEEMKNENVRPSVVTYGTLVEG 298
Query: 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKV----KDDFLELFPD 171
+ +A+ + EM P ++ + I+ L F+E + + L++ P
Sbjct: 299 YCRMRRVEKALEMVGEMTKEGIKPNAIVYNPIIDALAEAGRFKEALGMMERFHVLQIGPT 358
Query: 172 MIVYD 176
+ Y+
Sbjct: 359 LSTYN 363
>gi|361069485|gb|AEW09054.1| Pinus taeda anonymous locus CL3468Contig1_03 genomic sequence
Length = 67
Score = 39.3 bits (90), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 37/67 (55%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++ + DM+MML RNK++ + V ++++E + D +II AF + + AM
Sbjct: 1 PNLSLHADMIMMLGRNKRIEGVEAVLLEMQKEGLRPDTRVCTEIIGAFINVDMVQNAMET 60
Query: 129 YNEMRSS 135
+ M+ +
Sbjct: 61 FELMKQT 67
>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 546
Score = 39.3 bits (90), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 44/89 (49%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
K+ RP F + +L L + ++ +A++ ++DL + D + + +I GL
Sbjct: 436 KDQGIRPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLL 495
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGL 151
EA+ + ++M + P ++ F +I+ L
Sbjct: 496 EEALTMLSKMEENGCVPNAVTFDIIINAL 524
>gi|326493766|dbj|BAJ85345.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 671
Score = 39.3 bits (90), Expect = 0.75, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD + Y +LM L ++ +A+ + ++ R ++ TF IRAF +GL A+ +
Sbjct: 210 PDTYTYNTVLMGLCGARQWEDAEALMAEMVRNHCPPNEVTFATQIRAFCQNGLLDRAVQL 269
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVK-DDFLELFPDMI 173
+ M TP + + ++ G F E+ + DD +EL M+
Sbjct: 270 LDRMPQYGCTPDVVIYSTLVNG------FSEQGRVDDAIELLNGML 309
Score = 39.3 bits (90), Expect = 0.93, Method: Composition-based stats.
Identities = 31/134 (23%), Positives = 63/134 (47%), Gaps = 15/134 (11%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD+F Y +L L R + +A ++ ++ R++ ++ TF +I + GL A+
Sbjct: 515 KPDIFGYNAVLKGLCRAARWEDAGELISNMARKDCPPNEITFNILINSLCQKGLVDRAIE 574
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK-DDFLELF------PDMIVYDPP-E 179
++ +M +TP + ++ G F E+ + DD L PD + Y+ +
Sbjct: 575 VFEQMPKYGSTPDIFTYNALING------FSEQGRLDDARRLLSTMSCKPDAVSYNSALK 628
Query: 180 DLFEDQEWRRESDE 193
L + W +E++E
Sbjct: 629 GLCRAERW-KEAEE 641
>gi|125585400|gb|EAZ26064.1| hypothetical protein OsJ_09917 [Oryza sativa Japonica Group]
Length = 552
Score = 39.3 bits (90), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
R ++ Y L L + ++ +A+ +WE++ RE V D TF +I G+P +A+
Sbjct: 22 RKEVILYNVALKALRKRRRWSDAEALWEEMLREGVQPDNATFSTVISCARACGMPGKAVE 81
Query: 128 IYNEMRSSPATPISLPFRVIL 148
+ +M +P L + ++
Sbjct: 82 WFEKMPDFGCSPDMLTYSAVI 102
>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Glycine max]
Length = 794
Score = 39.3 bits (90), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+ + +L + +N E V+E++KR ++ TF +I A+ G +AM
Sbjct: 423 PDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAA 482
Query: 129 YNEMRSSPATPISLPFRVILKGL 151
Y M + +P + +L L
Sbjct: 483 YKRMLEAGVSPDLSTYNAVLATL 505
>gi|242038895|ref|XP_002466842.1| hypothetical protein SORBIDRAFT_01g015050 [Sorghum bicolor]
gi|241920696|gb|EER93840.1| hypothetical protein SORBIDRAFT_01g015050 [Sorghum bicolor]
Length = 1090
Score = 39.3 bits (90), Expect = 0.76, Method: Composition-based stats.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 8/130 (6%)
Query: 45 FQRQDQVFLCMKLYD-VVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVL 103
+ ++ Q + LY +VRK I RPD YR +++ L+ + A + E + E +
Sbjct: 725 YVKRGQFSKSLYLYKYMVRKGI--RPDNVTYRLLILGLSECGLIDIAVKFLEKMVLEGIF 782
Query: 104 FDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKD 163
D+ F +I +FS+ A+ ++N M+ +P S F ++ GLI R+ D
Sbjct: 783 PDKLVFDILITSFSEKSKMHNALRLFNCMKCLHLSPSSKTFSAMINGLI-----RKNYLD 837
Query: 164 DFLELFPDMI 173
E+ +M+
Sbjct: 838 QSHEVLHEML 847
>gi|6723418|emb|CAB66911.1| putative protein [Arabidopsis thaliana]
Length = 1184
Score = 39.3 bits (90), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100
++ ++++Q C++L + +++ + PD+ Y ++ + + +V EA ++W +++
Sbjct: 383 IMVAHEKKEQFEECLELIEKMKRRGCH-PDLLIYNVVIRLACKLGEVKEAVRLWNEMEAN 441
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREK 160
+ TF +I F+ G EA + EM S S P LK L+
Sbjct: 442 GLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGI--FSAPQYGTLKSLL-----NNL 494
Query: 161 VKDDFLELFPDM 172
V+DD LE+ D+
Sbjct: 495 VRDDKLEMAKDV 506
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++ ++ +L R K++EAK+V +K + D F +++ ++ +G ++A +
Sbjct: 234 PNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDL 293
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPEDL 181
N+MR P + V+++ L EK D+ + +F +M Y D+
Sbjct: 294 MNDMRKRGFEPNVNCYTVLIQALCRT----EKRMDEAMRVFVEMERYGCEADI 342
>gi|297832060|ref|XP_002883912.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329752|gb|EFH60171.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 623
Score = 39.3 bits (90), Expect = 0.77, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 39/83 (46%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD Y ++ L K EA+++ ++KR + D ++ +I +S G A +
Sbjct: 501 PDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFIV 560
Query: 129 YNEMRSSPATPISLPFRVILKGL 151
+EM S P L + +LKGL
Sbjct: 561 RDEMLSLGFNPTLLTYNALLKGL 583
>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 39.3 bits (90), Expect = 0.77, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
S++A + R+ +KL++ + +E PD++ +L ARN+ + E K+V E +K
Sbjct: 367 SMIAGYAREGLAGEAVKLFEEMEEE-GISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKE 425
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133
++ FD ++ ++ G EA +++EMR
Sbjct: 426 NDMGFDIFVSNALMDMYAKCGSMREAELVFSEMR 459
>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
[Vitis vinifera]
gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
Length = 890
Score = 39.3 bits (90), Expect = 0.77, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 11/131 (8%)
Query: 50 QVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTF 109
+VFL M R E+ Y +++ L ++ EA +++ D+ + T+
Sbjct: 250 EVFLIMPQKGCQRNEV-------SYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTY 302
Query: 110 GDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE--KVKDDFLE 167
+I A S SG EA+ ++NEM+ P + V++ GL + E K+ + E
Sbjct: 303 TVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSE 362
Query: 168 --LFPDMIVYD 176
L P ++ Y+
Sbjct: 363 KGLIPSVVTYN 373
>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 499
Score = 39.3 bits (90), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWED 96
D V ++ +VFL MK RP++F Y M+ L ++ V +A ++E+
Sbjct: 167 DAVCKCGGVEKALKVFLDMKSRGC-------RPNIFTYTSMIDGLGKSGHVDKAFFLFEE 219
Query: 97 LKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+ E ++ + + +I SG A ++ EM S P + F ++ GL
Sbjct: 220 MTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGL 274
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/122 (19%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
+++ D+ Y ++ L ++K++ EA +++ +L+ + ++ D +TF ++ SG
Sbjct: 291 RDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRI 350
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREK----VKDDFLELFPDMIVYDPP 178
+A + +M+ + TP + ++ GL E ++ L PD++ Y+
Sbjct: 351 HDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTL 410
Query: 179 ED 180
D
Sbjct: 411 ID 412
>gi|356513139|ref|XP_003525271.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Glycine max]
Length = 621
Score = 39.3 bits (90), Expect = 0.77, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 38/85 (44%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
++P + Y ++ L R K+ + + + D +I AFSDSG EAM
Sbjct: 91 HKPTLITYTTLVAALTRQKRFKSIPALLSKVADNGMKPDSILLNAMINAFSDSGKVDEAM 150
Query: 127 FIYNEMRSSPATPISLPFRVILKGL 151
I+ +M+ P + + ++KG
Sbjct: 151 KIFQKMKEYGCKPTTSTYNTLIKGF 175
>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Glycine max]
Length = 673
Score = 39.3 bits (90), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 69/135 (51%), Gaps = 13/135 (9%)
Query: 38 LVSVLAEFQRQDQVFLCMKLYDVV-RKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWED 96
SVL + L ++++ V RK++ P+M ++ M AR + +AK+V++
Sbjct: 305 CASVLRACGDLSALLLGRRIHEYVERKKLC--PNMLLENSLIDMYARCGCLEDAKRVFDR 362
Query: 97 LKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL-----KGL 151
+K +V ++ +I A+ +G A+ ++ EM++S +P S+ F IL GL
Sbjct: 363 MKFRDVA----SWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGL 418
Query: 152 IPYPEFR-EKVKDDF 165
+ +F +++ DD+
Sbjct: 419 LNEGKFYFKQMTDDY 433
>gi|357442883|ref|XP_003591719.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|357501105|ref|XP_003620841.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480767|gb|AES61970.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495856|gb|AES77059.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 524
Score = 39.3 bits (90), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%)
Query: 77 MLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSP 136
+ +M+ +V +AK V+ + + V D H++ II+ + EA+ ++NEMR
Sbjct: 281 LAVMMKEVNQVNKAKHVFNIIGKRRVTPDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKG 340
Query: 137 ATPISLPFRVILKGL 151
TP + + ++ GL
Sbjct: 341 ITPDKVTYSSLIDGL 355
>gi|313851107|ref|NP_001186539.1| pentatricopeptide repeat protein [Zea mays]
gi|312064725|gb|ADQ27447.1| pentatricopeptide repeat protein [Zea mays]
gi|414872960|tpg|DAA51517.1| TPA: hypothetical protein ZEAMMB73_325693 [Zea mays]
Length = 489
Score = 39.3 bits (90), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD Y M+ M N K+ A +VW+ ++ ++ L HTF +I D G S+A
Sbjct: 380 KPDSDTYTMMIKMFCENDKIEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACV 439
Query: 128 IYNEM 132
+ +M
Sbjct: 440 LLEDM 444
>gi|326508346|dbj|BAJ99440.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 819
Score = 39.3 bits (90), Expect = 0.79, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
S++ + QV C ++D++ E +P++ Y +L A + EA +++ LK+
Sbjct: 335 SIIHSYYVCGQVENCKAVFDMMVAE-GVKPNIVSYNALLGAYASHGMHTEAFGIFKLLKQ 393
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
+ D ++ ++ A+ S P +A ++NEMR + P + + ++ F+E
Sbjct: 394 NGLRPDVVSYTTLLNAYGRSAQPEKAREVFNEMRKNSCKPNKVSYNALIDAYGSAGMFKE 453
Query: 160 KV 161
+
Sbjct: 454 AI 455
>gi|255541017|ref|XP_002511573.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550688|gb|EEF52175.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 954
Score = 39.3 bits (90), Expect = 0.79, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIY 129
D+ + M+ A++ K VEA +++E ++RE + D TF ++ A S + L E F +
Sbjct: 718 DLISWTTMIASCAQHGKGVEALKIYEQMRREGIRPDSVTFVGVLSACSHANLVEEGYFHF 777
Query: 130 NEM 132
N M
Sbjct: 778 NSM 780
>gi|224108157|ref|XP_002314741.1| predicted protein [Populus trichocarpa]
gi|222863781|gb|EEF00912.1| predicted protein [Populus trichocarpa]
Length = 525
Score = 39.3 bits (90), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P+++ Y +L M R K + + +++W+++KR +V D+ T+ +I A++ S +
Sbjct: 390 PNVWIYNSLLDMHGRAKNLRQVEKLWKEMKRRKVAPDKVTYSSVISAYNKSKEYEMCVRY 449
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVK--DDFLELFPDMIVYDPPED 180
Y+E R + I I+ G+ K+ D+ ++L DM P D
Sbjct: 450 YHEYRINGGV-IDGAMAGIMAGVFS------KISRIDELVKLLRDMKSEGTPID 496
>gi|186478651|ref|NP_173362.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806505|sp|Q9LN69.2|PPR50_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g19290
gi|332191705|gb|AEE29826.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 904
Score = 39.3 bits (90), Expect = 0.79, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 16/95 (16%)
Query: 54 CMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQ--------------VWEDLKR 99
C++++++ K+ +RPD Y M+ +L+R + + K VW +L R
Sbjct: 87 CLEIFNLASKQQKFRPDYKAYCKMVHILSRARNYQQTKSYLCELVALNHSGFVVWGELVR 146
Query: 100 --EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEM 132
+E F F I++ +++ GL A+ +++ M
Sbjct: 147 VFKEFSFSPTVFDMILKVYAEKGLVKNALHVFDNM 181
Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 29 HVSRLLKSD-------LVSVLAE-FQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMM 80
HV LLK + VL + + R Q+ ++++D + EI R + ++
Sbjct: 317 HVFELLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNM-IEIGVRTNTTICNSLING 375
Query: 81 LARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPI 140
++ ++VEA+Q++ + + D HT+ ++ + +G EA+ + ++M P
Sbjct: 376 YCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPT 435
Query: 141 SLPFRVILKG 150
+ + ++LKG
Sbjct: 436 VMTYNILLKG 445
>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
Length = 797
Score = 39.3 bits (90), Expect = 0.81, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD + + A+ + EA ++ +K++ + D FG +I A G +A+
Sbjct: 376 PDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLK 435
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELF-----PDMIVYD 176
+N+M + P F ++ GL ++ EK K+ + E+ PD++ ++
Sbjct: 436 FNQMMNEGVAPNIFVFNSLVYGLCTVDKW-EKAKEFYFEMLNQGIRPDVVFFN 487
>gi|410110065|gb|AFV61112.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
citrodora]
Length = 435
Score = 39.3 bits (90), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 6/125 (4%)
Query: 31 SRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVR------KEIWYRPDMFFYRDMLMMLARN 84
SRL +S L + VF KL+ R K P+ Y +L M N
Sbjct: 75 SRLKRSGFTPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASYSTLLTMYVEN 134
Query: 85 KKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPF 144
KK +EA V+ +++ + L D T +I + G+ EA ++ MR + +
Sbjct: 135 KKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIETNVVSY 194
Query: 145 RVILK 149
+L+
Sbjct: 195 NTLLR 199
>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61400-like [Vitis vinifera]
Length = 665
Score = 39.3 bits (90), Expect = 0.81, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 75 RDMLMMLARNKKVVEAKQVWEDLKR-EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133
RD++ L +++ V+ L R E F + FG +I AFS+ GL EA+++Y +M
Sbjct: 94 RDLIQCLQNSRRSRICCSVFNVLSRLESSKFTPNVFGVLIIAFSEMGLVEEALWVYYKMD 153
Query: 134 SSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
PA ++L GL+ F D +++ DM+
Sbjct: 154 VLPAMQAC---NMVLDGLVKKGRF-----DTMWKVYGDMV 185
>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 777
Score = 39.3 bits (90), Expect = 0.81, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 59 DVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118
++VR+ I +PDM+ Y +L L K+ EA +W + K+ D +T+G +I +
Sbjct: 502 EMVRRGI--QPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCK 559
Query: 119 SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE--KVKDD 164
+ E ++ EM + ++ + +++ RE +++DD
Sbjct: 560 ANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDD 607
Score = 36.6 bits (83), Expect = 4.8, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 44/83 (53%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD + Y M+ + +V E +++++++ ++ + +G +IRA+ ++G EA +
Sbjct: 545 PDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRL 604
Query: 129 YNEMRSSPATPISLPFRVILKGL 151
++MRS S + ++ GL
Sbjct: 605 RDDMRSRGIPQTSATYSSLIHGL 627
>gi|356529509|ref|XP_003533333.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g12300, mitochondrial-like [Glycine max]
Length = 450
Score = 39.3 bits (90), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 44/84 (52%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
R D + +L L + ++ +A++V++DL +E D + + +I + GL EA+
Sbjct: 345 RFDRLTFTILLDGLCKGGRLKDAQEVFQDLLTKEYDLDVYPYNVMINGYCKQGLLEEALT 404
Query: 128 IYNEMRSSPATPISLPFRVILKGL 151
+ ++M + P ++ F +I+ L
Sbjct: 405 MRSKMEDNGCIPSAVTFEIIINAL 428
>gi|242061532|ref|XP_002452055.1| hypothetical protein SORBIDRAFT_04g017800 [Sorghum bicolor]
gi|241931886|gb|EES05031.1| hypothetical protein SORBIDRAFT_04g017800 [Sorghum bicolor]
Length = 810
Score = 39.3 bits (90), Expect = 0.82, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 7/111 (6%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
+ I ++P+ YR +L L R + + ++ ++ R ++ D+ TFG II GL
Sbjct: 399 RTIPWKPNTVCYRSVLKGLCRADRWDDVGKLVAEMIRNQLNLDEVTFGLIIDCLCQKGLV 458
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK-DDFLELFPDM 172
+ EM +P + + ++ G F E DD LELF +M
Sbjct: 459 DYGAEVLREMTKFGCSPDIIIYNSLING------FSENGSVDDALELFKNM 503
Score = 38.9 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 36/162 (22%), Positives = 71/162 (43%), Gaps = 20/162 (12%)
Query: 22 FDRFIKSHVSR--LLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLM 79
D+ K +R ++ ++++S LAE R ++ + L+D ++ +PD+F Y ++
Sbjct: 261 LDQMSKCRCTRGVIVYNEIISCLAELGRVEEA---LHLFD----QMPCKPDIFSYNTVMK 313
Query: 80 MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
L R+ + +A + + R++ D+ TF +I GL AM + +M P
Sbjct: 314 GLCRDGRWEDAGTLIAGMVRKDCPPDEVTFNTVISYLCHRGLVDCAMEVVEQMPKYGCKP 373
Query: 140 ISLPFRVILKGLIPYPEFREKVKDDFLELF------PDMIVY 175
+ + ++ L DD LEL P+ + Y
Sbjct: 374 DNFTYSALVNALS-----ERGCVDDALELLRTIPWKPNTVCY 410
>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 554
Score = 39.3 bits (90), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 5/113 (4%)
Query: 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123
E+ PD + Y ++ L + A V +++ R + D T+ ++ A
Sbjct: 151 EMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYK 210
Query: 124 EAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176
+AM + +EMR TP + + V++ G+ +E DD +E ++ Y
Sbjct: 211 QAMKLLDEMRDKGCTPDIVTYNVVVNGIC-----QEGRVDDAIEFLKNLPSYG 258
>gi|225430190|ref|XP_002282419.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
mitochondrial [Vitis vinifera]
gi|296081989|emb|CBI20994.3| unnamed protein product [Vitis vinifera]
Length = 597
Score = 39.3 bits (90), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P + Y +L R++K+ A+Q+W +KRE V T+G ++ + +A+ +
Sbjct: 249 PSIRVYNVLLNGWFRSRKLKRAEQLWRTMKRENVKPTVVTYGTLVEGYCRMRRSEKAIEL 308
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKV 161
EMR P + + I+ L F+E +
Sbjct: 309 VGEMRGKGIEPNVIVYNPIIDSLAEAGRFKEAM 341
>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 915
Score = 39.3 bits (90), Expect = 0.85, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 44/91 (48%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD + Y + L + V EA+ ++E LK + + ++ + +I + G S+ F+
Sbjct: 482 PDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFL 541
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
++M S+ P S+ + ++ G F+E
Sbjct: 542 LDKMLSAGCVPNSITYNSLIDGYCKEKNFKE 572
>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
Length = 579
Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/116 (17%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWE 95
+ L+ L + + ++ +C + KE+ P+ + Y ++ L R +K +A W+
Sbjct: 441 NSLLDALVKAEEINEALVCFQ----SMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQ 496
Query: 96 DLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
D++++ ++ + T+ +I + G ++A ++ +++ P + F +++G+
Sbjct: 497 DMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGM 552
>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
Length = 688
Score = 39.3 bits (90), Expect = 0.85, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 42/83 (50%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+F Y M++ + + +A+Q+ +++ ++ D T+ +I AF G EA +
Sbjct: 288 PDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAEL 347
Query: 129 YNEMRSSPATPISLPFRVILKGL 151
Y+EM P ++ + ++ G
Sbjct: 348 YDEMLPRGIIPNTITYNSMIDGF 370
>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
Length = 795
Score = 39.3 bits (90), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
M ++D +R Y PD+ + +L + +N E V++++K+ + ++ T+ +I
Sbjct: 415 MAVFDDLRSA-GYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLIS 473
Query: 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
++S GL +AM IY M + P + +L L
Sbjct: 474 SYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSAL 510
>gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa]
gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa]
Length = 1026
Score = 39.3 bits (90), Expect = 0.86, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
V KE+ + D+ + M++ A+N +A +V++++K+ V D TF ++ A S SG
Sbjct: 789 VFKEMSRKKDVISWNSMIVGFAKNGYAEDALRVFDEMKQSHVTPDDVTFLGVLTACSHSG 848
Query: 121 LPSEAMFIYNEM 132
SE I++ M
Sbjct: 849 RVSEGRLIFDMM 860
>gi|224076667|ref|XP_002304978.1| predicted protein [Populus trichocarpa]
gi|222847942|gb|EEE85489.1| predicted protein [Populus trichocarpa]
Length = 373
Score = 39.3 bits (90), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 14/130 (10%)
Query: 33 LLKSDLVSVLAEFQRQ-DQVFLCMKLYDVVRKEIWYR-------PDMFFYRDMLMMLARN 84
++KSD+ L F + +L K D R IW R PD+ Y L LA
Sbjct: 188 MIKSDVEPNLITFNTLLNGFYLNGKFADGER--IWSRMVEMNVVPDVRSYNAKLHALALE 245
Query: 85 KKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPF 144
++ EA +V E+++ + + D +F +IR F + EA Y EMR P
Sbjct: 246 NRMKEAIEVVEEMRDKGLELDVFSFNALIRGFLNGEDLEEAKQWYGEMRRHGCEPN---- 301
Query: 145 RVILKGLIPY 154
RV + LIP+
Sbjct: 302 RVTFQFLIPF 311
>gi|125548468|gb|EAY94290.1| hypothetical protein OsI_16061 [Oryza sativa Indica Group]
Length = 586
Score = 39.3 bits (90), Expect = 0.86, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 8/133 (6%)
Query: 22 FDRFIKSHVSRLLKSDLVS---VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDML 78
F+R+I+ R+ D+ S V+ R QV ++L + + E PD + ++
Sbjct: 241 FERWIQD---RVYSPDVWSFNVVIKGVCRVGQVQKALELVERM-NEFGCSPDTVTHNIIV 296
Query: 79 MMLARNKKVVEAKQVWEDLKREEVLF-DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPA 137
L R +V +V L+R+ V + TF +I + +G +AM +YN+M +S
Sbjct: 297 DGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGI 356
Query: 138 TPISLPFRVILKG 150
P ++ + V++ G
Sbjct: 357 MPNTVTYNVLING 369
>gi|115475535|ref|NP_001061364.1| Os08g0248400 [Oryza sativa Japonica Group]
gi|113623333|dbj|BAF23278.1| Os08g0248400, partial [Oryza sativa Japonica Group]
Length = 440
Score = 39.3 bits (90), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 66 WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEA 125
+P++ Y +L A +VE + + + + R + D+H F +I A + A
Sbjct: 341 GLKPNVITYSTLLHGYATKGALVEMRDLLDLMVRNGIQPDRHVFSILICACTKHQNVDVA 400
Query: 126 MFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLEL 168
MF++++MR TP + + ++ GL +V D L L
Sbjct: 401 MFVFSKMRQQRLTPDVVTYGTLIDGLCK----SGRVDDAMLNL 439
>gi|302672411|ref|XP_003025895.1| hypothetical protein SCHCODRAFT_80118 [Schizophyllum commune H4-8]
gi|300099571|gb|EFI90992.1| hypothetical protein SCHCODRAFT_80118 [Schizophyllum commune H4-8]
Length = 1327
Score = 39.3 bits (90), Expect = 0.89, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
RP++F Y +++ L++ +K A ++++ +K + + T+G +I A + G + +
Sbjct: 996 RPNLFLYNNIISKLSKARKTDTALELFQAMKEQGINPSSVTYGTVISACARVGDVASSEL 1055
Query: 128 IYNEMRSSPA-TPISLPFRVILK 149
++ EM + P P + P+ +++
Sbjct: 1056 LFEEMEAMPNFRPKAAPYNTMMQ 1078
>gi|115444491|ref|NP_001046025.1| Os02g0170000 [Oryza sativa Japonica Group]
gi|49388067|dbj|BAD25179.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535556|dbj|BAF07939.1| Os02g0170000 [Oryza sativa Japonica Group]
Length = 397
Score = 39.3 bits (90), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/104 (21%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 45 FQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF 104
+ + Q MK+++ + K I +P++ Y ++ AR +A++V+E++++
Sbjct: 92 YGKAKQPMSSMKVFNEM-KSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEP 150
Query: 105 DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
D + + ++ A+S +GLP A I++ M+ P + +++
Sbjct: 151 DVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILV 194
>gi|297808589|ref|XP_002872178.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318015|gb|EFH48437.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 568
Score = 39.3 bits (90), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 69/160 (43%), Gaps = 13/160 (8%)
Query: 16 QSHPVRFDRFIKS----HVSRLLKS--DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP 69
+S P+++ RF KS R ++S L++VL E R + K E +RP
Sbjct: 18 KSTPIKY-RFCKSCGEGSSCRTVRSRTKLMNVLIERGRPHEAQTVFKTL----AETGHRP 72
Query: 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIY 129
+ Y +L + K+ + ++++ D F +I AFS+SG +A+
Sbjct: 73 SLISYTTLLAAMTVQKQYGSLSSIVSEVEQSGTKPDSIFFNAVINAFSESGNMEDAVQAL 132
Query: 130 NEMRSSPATPISLPFRVILK--GLIPYPEFREKVKDDFLE 167
+M+ P + + ++K G+ PE + D LE
Sbjct: 133 LKMKELGLNPTTSTYNTLIKGYGIAGKPERSSALLDLMLE 172
>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Glycine max]
Length = 804
Score = 39.3 bits (90), Expect = 0.90, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
MK++D + K PD+ + +L + +N + +++++KR + ++ TF +I
Sbjct: 424 MKVFDDI-KLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLIS 482
Query: 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
A+S G +AM +Y M + P + +L L
Sbjct: 483 AYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAAL 519
>gi|195612318|gb|ACG27989.1| hypothetical protein [Zea mays]
Length = 603
Score = 39.3 bits (90), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 55/114 (48%), Gaps = 10/114 (8%)
Query: 22 FDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMML 81
FDR + ++ +++S+ + +R + + L K+ P++ Y +L M
Sbjct: 428 FDRCVVAY------GNMISMYGKIRRASEATRLLALM----KQKGCEPNVLVYNSLLDMH 477
Query: 82 ARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135
R +A+++W+++ R +V D+ ++ II A + +G M +Y E R +
Sbjct: 478 GRLGNSKQAEKIWKEMLRRKVRPDRISYTAIILANNRAGELDRCMELYQEFRET 531
>gi|449530367|ref|XP_004172167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like, partial [Cucumis sativus]
Length = 564
Score = 39.3 bits (90), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%)
Query: 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIY 129
+ F Y ++ AR V EA + + +KRE V D HT+ I A S +G A
Sbjct: 332 NTFIYNILIDGWARRGDVWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATKTI 391
Query: 130 NEMRSSPATPISLPFRVILKG 150
EM+S P + ++ G
Sbjct: 392 EEMKSVGVKPNVKTYTTLING 412
>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
Length = 924
Score = 39.3 bits (90), Expect = 0.91, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P+ + ++ A+ + E ++ +K++ + + T+G +I A G +A+
Sbjct: 503 PNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQ 562
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELF-----PDMIVYD 176
+N+M + TP ++ F ++ GL ++ EKV++ FLE+ PD++ ++
Sbjct: 563 FNQMINEGVTPNNVVFNSLVYGLCTVDKW-EKVEELFLEMLNQGIRPDIVFFN 614
>gi|224119538|ref|XP_002318099.1| predicted protein [Populus trichocarpa]
gi|222858772|gb|EEE96319.1| predicted protein [Populus trichocarpa]
Length = 426
Score = 39.3 bits (90), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 78 LMMLARNKKVVEAKQVWE---DLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS 134
+M+ KK AK+ WE + R+ V + G +I++F D GL EA+ I EM
Sbjct: 15 IMITVMRKKGCTAKEAWEFFERMTRKGVKWSPEVLGALIKSFCDEGLKKEALIIQTEMER 74
Query: 135 SPATPISLPFRVIL 148
+ ++ + ++
Sbjct: 75 RGISSNAIIYNTLM 88
>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 39.3 bits (90), Expect = 0.91, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123
E+ PD+ Y ++ + ++VEA+++++ + + D ++ +I+ + +
Sbjct: 333 EMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRID 392
Query: 124 EAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLEL-----FPDMIVY 175
EA ++NEM TP ++ + ++ GL RE +D F + PD+ Y
Sbjct: 393 EAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLRE-AQDLFKNMHSNGNLPDLFTY 448
Score = 36.6 bits (83), Expect = 5.8, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 39/84 (46%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD F Y ++ + K++ EAKQ++ ++ + + D + +I G EA
Sbjct: 372 KPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQD 431
Query: 128 IYNEMRSSPATPISLPFRVILKGL 151
++ M S+ P + ++L G
Sbjct: 432 LFKNMHSNGNLPDLFTYSMLLDGF 455
>gi|449530158|ref|XP_004172063.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
chloroplastic-like [Cucumis sativus]
Length = 608
Score = 39.3 bits (90), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 69/138 (50%), Gaps = 11/138 (7%)
Query: 36 SDLVSVLAEFQR-QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVW 94
S L+S+ + R +D + L K+ KE +P+++ Y ++ M + K + + +++W
Sbjct: 439 SSLISMYGKTGRLKDAMRLLAKM-----KEKGCQPNVWIYNILMEMHGKAKNLKQVEKLW 493
Query: 95 EDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPY 154
+++KR+++ D+ ++ II A+ + + Y E R + T I F I+ G+
Sbjct: 494 KEMKRKKIAPDKVSYTSIISAYVKASEFEKCEQYYREFRMNGGT-IDKAFGGIMVGVFS- 551
Query: 155 PEFREKVKDDFLELFPDM 172
+ D+ ++L DM
Sbjct: 552 ---KTSRVDELVKLLRDM 566
>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
Length = 646
Score = 39.3 bits (90), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
PD+F Y ++ L + ++V EA + ++++ E L + TF +I A S +G S A
Sbjct: 206 NPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAK 265
Query: 128 IYNEMRSSPATPISLPFRVILKGLI 152
+ + M P + + ++ GL
Sbjct: 266 LVDNMFLKGCVPNEVTYNTLIHGLC 290
>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
Length = 1099
Score = 39.3 bits (90), Expect = 0.92, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 11/131 (8%)
Query: 50 QVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTF 109
+VFL M R E+ Y +++ L ++ EA +++ D+ + T+
Sbjct: 250 EVFLIMPQKGCQRNEV-------SYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTY 302
Query: 110 GDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE--KVKDDFLE 167
+I A S SG EA+ ++NEM+ P + V++ GL + E K+ + E
Sbjct: 303 TVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSE 362
Query: 168 --LFPDMIVYD 176
L P ++ Y+
Sbjct: 363 KGLIPSVVTYN 373
>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 504
Score = 39.3 bits (90), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++ Y +L L + ++ A +++E + + D ++ +I + SG EAM +
Sbjct: 217 PNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTL 276
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
+ +M+ TP + ++LK L Y R + ELF +M
Sbjct: 277 FRKMQYEELTPSITTYTILLKAL--YQNGRIRTAK---ELFNNM 315
>gi|356529805|ref|XP_003533478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
chloroplastic-like [Glycine max]
Length = 1092
Score = 39.3 bits (90), Expect = 0.93, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL 97
L+SV A Q + F ++L R E PD Y +++ A++ KV +V+ +
Sbjct: 466 LMSVCASSQDSEGAFQVLQLLKDARLE----PDCKLYTTLILTCAKSGKVDLMFEVFHKM 521
Query: 98 KREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
V + HT+G +I + +G ++A Y MRS P + F ++
Sbjct: 522 VNSGVEPNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 572
>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
Length = 948
Score = 39.3 bits (90), Expect = 0.93, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 75 RDMLMMLARNKKVVEAKQVWEDLKR-EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133
RD++ L +++ V+ L R E F + FG +I AFS+ GL EA+++Y +M
Sbjct: 94 RDLIQCLQNSRRSRICCSVFNVLSRLESSKFTPNVFGVLIIAFSEMGLVEEALWVYYKMD 153
Query: 134 SSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
PA ++L GL+ F D +++ DM+
Sbjct: 154 VLPAMQAC---NMVLDGLVKKGRF-----DTMWKVYGDMV 185
>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
Length = 670
Score = 38.9 bits (89), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
PD+F Y ++ L + ++V EA + ++++ E L + TF +I A S +G S A
Sbjct: 230 NPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAK 289
Query: 128 IYNEMRSSPATPISLPFRVILKGLI 152
+ + M P + + ++ GL
Sbjct: 290 LVDNMFLKGCVPNEVTYNTLIHGLC 314
>gi|115446101|ref|NP_001046830.1| Os02g0470000 [Oryza sativa Japonica Group]
gi|47497415|dbj|BAD19472.1| putative PPR protein [Oryza sativa Japonica Group]
gi|47497530|dbj|BAD19582.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113536361|dbj|BAF08744.1| Os02g0470000 [Oryza sativa Japonica Group]
Length = 649
Score = 38.9 bits (89), Expect = 0.94, Method: Composition-based stats.
Identities = 34/144 (23%), Positives = 68/144 (47%), Gaps = 17/144 (11%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
S+L F Q V + ++L+ + + +PD+F Y +L L R + +A ++ ++
Sbjct: 469 SLLNGFSEQGLVEVAIQLF----RSMPCKPDIFSYNAVLKGLCRAARWEDAGELIAEMVG 524
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
++ ++ TF +I + GL A+ + +M + +TP + ++ G F E
Sbjct: 525 KDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALING------FSE 578
Query: 160 KVK-DDFLELF------PDMIVYD 176
+ + DD L+L PD I Y+
Sbjct: 579 QGRLDDALKLLSTMSCKPDAISYN 602
>gi|356544435|ref|XP_003540656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
chloroplastic-like [Glycine max]
Length = 1071
Score = 38.9 bits (89), Expect = 0.94, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL 97
L+SV A Q + F ++L R E PD Y +++ A++ KV +V+ +
Sbjct: 445 LMSVCASSQDSEGAFQVLQLLKDARLE----PDCKLYTTLILTCAKSGKVDLMFEVFHKM 500
Query: 98 KREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
V + HT+G +I + +G ++A Y MRS P RV+ LI
Sbjct: 501 VNSGVEPNVHTYGALIGGCARAGQVAKAFGAYGIMRSKNVKPD----RVVFNALI 551
>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
Length = 754
Score = 38.9 bits (89), Expect = 0.94, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 74 YRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133
Y +L L RN EA + E L V FD TF +IRA G EA ++ +
Sbjct: 577 YATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAIS 636
Query: 134 SSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
+ P L +RV++ LI +E+ +D LF M
Sbjct: 637 TYGLVPTILTYRVMITNLI-----KEESFEDADNLFSSM 670
>gi|125539409|gb|EAY85804.1| hypothetical protein OsI_07165 [Oryza sativa Indica Group]
Length = 649
Score = 38.9 bits (89), Expect = 0.94, Method: Composition-based stats.
Identities = 34/144 (23%), Positives = 68/144 (47%), Gaps = 17/144 (11%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
S+L F Q V + ++L+ + + +PD+F Y +L L R + +A ++ ++
Sbjct: 469 SLLNGFSEQGLVEVAIQLF----RSMPCKPDIFSYNAVLKGLCRAARWEDAGELIAEMVG 524
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
++ ++ TF +I + GL A+ + +M + +TP + ++ G F E
Sbjct: 525 KDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALING------FSE 578
Query: 160 KVK-DDFLELF------PDMIVYD 176
+ + DD L+L PD I Y+
Sbjct: 579 QGRLDDALKLLSTMSCKPDAISYN 602
>gi|15233383|ref|NP_193806.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75211707|sp|Q9SVH3.1|PP328_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g20740
gi|5262214|emb|CAB45840.1| putative protein [Arabidopsis thaliana]
gi|7268870|emb|CAB79074.1| putative protein [Arabidopsis thaliana]
gi|332658957|gb|AEE84357.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 727
Score = 38.9 bits (89), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/100 (20%), Positives = 45/100 (45%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
+E +PD+F Y M+ L + + +VW++++R+E+ D +G ++ G
Sbjct: 290 RENLCKPDVFAYTAMIKTLVSEGNLDASLRVWDEMRRDEIKPDVMAYGTLVVGLCKDGRV 349
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
++ EM+ +RV+++G + + R
Sbjct: 350 ERGYELFMEMKGKQILIDREIYRVLIEGFVADGKVRSACN 389
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 43/90 (47%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
K+ ++P +F Y ++ L +N A V+ED K + ++ + TF +++ +G
Sbjct: 220 KKFGFKPRVFLYNRIMDALVKNGYFDLALAVYEDFKEDGLVEESTTFMILVKGLCKAGRI 279
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLI 152
E + I MR + P + ++K L+
Sbjct: 280 EEMLEILQRMRENLCKPDVFAYTAMIKTLV 309
>gi|115477950|ref|NP_001062570.1| Os09g0110200 [Oryza sativa Japonica Group]
gi|46806362|dbj|BAD17538.1| PPR protein-like protein [Oryza sativa Japonica Group]
gi|46806431|dbj|BAD17588.1| PPR protein-like protein [Oryza sativa Japonica Group]
gi|113630803|dbj|BAF24484.1| Os09g0110200 [Oryza sativa Japonica Group]
Length = 794
Score = 38.9 bits (89), Expect = 0.95, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 6/124 (4%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
+ DV++K+ + PD F Y +L +L + + A + ++ + ++ D T +I
Sbjct: 367 LSFLDVMKKK-GFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMIC 425
Query: 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174
GL EAM I++EM P + + ++ G +RE ++ LF M +
Sbjct: 426 GLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGF-----YREGRLEEARMLFHKMEM 480
Query: 175 YDPP 178
+ P
Sbjct: 481 GNNP 484
>gi|125604707|gb|EAZ43743.1| hypothetical protein OsJ_28367 [Oryza sativa Japonica Group]
Length = 812
Score = 38.9 bits (89), Expect = 0.95, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 6/124 (4%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
+ DV++K+ + PD F Y +L +L + + A + ++ + ++ D T +I
Sbjct: 367 LSFLDVMKKK-GFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMIC 425
Query: 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174
GL EAM I++EM P + + ++ G +RE ++ LF M +
Sbjct: 426 GLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGF-----YREGRLEEARMLFHKMEM 480
Query: 175 YDPP 178
+ P
Sbjct: 481 GNNP 484
>gi|449466949|ref|XP_004151188.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
chloroplastic-like [Cucumis sativus]
Length = 608
Score = 38.9 bits (89), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 69/138 (50%), Gaps = 11/138 (7%)
Query: 36 SDLVSVLAEFQR-QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVW 94
S L+S+ + R +D + L K+ KE +P+++ Y ++ M + K + + +++W
Sbjct: 439 SSLISMYGKTGRLKDAMRLLAKM-----KEKGCQPNVWIYNILMEMHGKAKNLKQVEKLW 493
Query: 95 EDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPY 154
+++KR+++ D+ ++ II A+ + + Y E R + T I F I+ G+
Sbjct: 494 KEMKRKKIAPDKVSYTSIISAYVKASEFEKCEQYYREFRMNGGT-IDKAFGGIMVGVFS- 551
Query: 155 PEFREKVKDDFLELFPDM 172
+ D+ ++L DM
Sbjct: 552 ---KTSRVDELVKLLRDM 566
>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
Length = 825
Score = 38.9 bits (89), Expect = 0.96, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 74 YRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133
Y +L L RN EA + E L V FD TF +IRA G EA ++ +
Sbjct: 648 YATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAIS 707
Query: 134 SSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
+ P L +RV++ LI +E+ +D LF M
Sbjct: 708 TYGLVPTILTYRVMITNLI-----KEESFEDADNLFSSM 741
>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g61990, mitochondrial; Flags: Precursor
gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 974
Score = 38.9 bits (89), Expect = 0.97, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 74 YRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133
Y ++ L +N KV +A++++ +++ + + D ++G +I FS G +A I++EM
Sbjct: 595 YTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMV 654
Query: 134 SSPATPISLPFRVILKGLIPYPEFREKVKDDFLE-----LFPDMIVY 175
TP + + ++L G E EK K+ E L P+ + Y
Sbjct: 655 EEGLTPNVIIYNMLLGGFCRSGEI-EKAKELLDEMSVKGLHPNAVTY 700
>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 860
Score = 38.9 bits (89), Expect = 0.97, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 40/82 (48%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
++PD+F Y +L A + ++ +K + + H F +I A++ G+ +AM
Sbjct: 401 HKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAM 460
Query: 127 FIYNEMRSSPATPISLPFRVIL 148
I+ EM+ +P + + ++
Sbjct: 461 LIFTEMQQQGVSPDVVTYSTVI 482
>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
Length = 721
Score = 38.9 bits (89), Expect = 0.97, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 56 KLYDVVRKEI--WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113
K Y+V+R+ + + PD Y ++ L KV +A Q+++++KR + D + + +I
Sbjct: 205 KAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLI 264
Query: 114 RAFSDSGLPSEAMFIYNEMRSSPATP 139
+F +G +A ++EM P
Sbjct: 265 DSFCKAGFIEQARNWFDEMERDGCAP 290
>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
Length = 457
Score = 38.9 bits (89), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 5/113 (4%)
Query: 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123
E+ PD + Y ++ L + A V +++ R + D T+ ++ A
Sbjct: 25 EMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYK 84
Query: 124 EAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176
+AM + +EMR TP + + V++ G+ +E DD +E ++ Y
Sbjct: 85 QAMKLLDEMRDKGCTPDIVTYNVVVNGIC-----QEGRVDDAIEFLKNLPSYG 132
>gi|449525162|ref|XP_004169587.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g73710-like [Cucumis sativus]
Length = 1026
Score = 38.9 bits (89), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 46/94 (48%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD Y ++ M + V EA+++ +++R TF +I +++ GL S+A+ +
Sbjct: 564 PDECTYNSLIQMFSGGDLVDEARRLLTEMQRMGFKPTCQTFSAVIASYARLGLMSDAVEV 623
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
Y+ M + P + + V++ G + E +K
Sbjct: 624 YDMMVHADVEPNEILYGVLVNGFAEIGQAEEALK 657
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL 97
L S++ F + + ++Y+ + K + D M+ + A V EAKQV+EDL
Sbjct: 674 LTSLIKAFSKVGSLEDARRIYNRM-KNMEDGADTIASNSMINLYADLGMVSEAKQVFEDL 732
Query: 98 KREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEF 157
RE D +F +I + + G+ EA+ + EM+ S + FR +++ +
Sbjct: 733 -RERGYADGVSFATMIYLYKNIGMLDEAIEVAEEMKESGLLRDATSFRKVIECYAINGQV 791
Query: 158 RE 159
RE
Sbjct: 792 RE 793
Score = 36.6 bits (83), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 39/91 (42%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
Y P++ Y +L L + +K E + W ++ V+ +T+G +I + GL EA+
Sbjct: 157 YVPNVIHYNIVLRTLGQAQKWDELRLCWNEMAENGVVPTNNTYGMLIDVYGKVGLVKEAL 216
Query: 127 FIYNEMRSSPATPISLPFRVILKGLIPYPEF 157
M P + +++ L EF
Sbjct: 217 LWIKHMTVRGIFPDEVTMNTVVRVLKDAGEF 247
Score = 36.2 bits (82), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 42 LAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE 101
L+ + + +K Y +R E+ PD+ +R +L +L+ V + + V ++++
Sbjct: 398 LSLYANDGNIDGALKCYRRIR-EVGLFPDVVTHRALLHVLSERNMVEDVENVIAEMEKSH 456
Query: 102 VLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133
+L D+H+ +I+ + + GL A + + R
Sbjct: 457 ILLDEHSLPRVIKMYINEGLLDRAKILLEKYR 488
>gi|356503775|ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Glycine max]
Length = 777
Score = 38.9 bits (89), Expect = 0.98, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Query: 49 DQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHT 108
D++F M D+V PD F Y +M+ A + V++A + + + + V D+ T
Sbjct: 624 DKMFQEMLQMDLV-------PDQFVYNEMIYSYAEDGNVMKAMSLHQQMVDQGVDCDKVT 676
Query: 109 FGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEF 157
+ +I A+ SE + ++M++ P + +++KGL +F
Sbjct: 677 YNSLILAYLRDRRVSEIKHLVDDMKAKGLVPKVDTYNILIKGLCDLKDF 725
>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
Length = 722
Score = 38.9 bits (89), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
K+ +PD+F Y +L ++ + + + A V+ + + ++ TF ++ +G
Sbjct: 158 KDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKT 217
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
+A+ +++EM P ++ + +IL GL + K DD L M V D
Sbjct: 218 DDALKMFDEMTQKGIPPNTMIYTIILSGLC-----QAKRTDDVHRLLNTMKVSGCCPD 270
>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
Length = 1205
Score = 38.9 bits (89), Expect = 0.99, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 46/89 (51%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
RP+ F + +L L + ++ +A++V++DL + + +T+ +I GL EA+
Sbjct: 441 RPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALT 500
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPE 156
+ ++M + P ++ F +I+ L E
Sbjct: 501 MLSKMEDNGCIPDAVTFEIIIIALFKKDE 529
>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
Length = 758
Score = 38.9 bits (89), Expect = 0.99, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
+K+ D++ +E + PD+F Y ++ L++N ++ EAK + + L D TF +I
Sbjct: 322 LKVMDLMLQE-GHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIV 380
Query: 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
A S EA+ + E+ +P F +++ L
Sbjct: 381 ALSSQNRLEEALDLARELTVKGLSPDVYTFNILINAL 417
Score = 37.4 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 42/83 (50%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD + +++ L+ ++ EA + +L + + D +TF +I A G P + +
Sbjct: 370 PDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRL 429
Query: 129 YNEMRSSPATPISLPFRVILKGL 151
+ EM+SS TP + + +++ L
Sbjct: 430 FEEMKSSGCTPDEVTYNILIDHL 452
>gi|242069901|ref|XP_002450227.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
gi|241936070|gb|EES09215.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
Length = 894
Score = 38.9 bits (89), Expect = 1.00, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 42/83 (50%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD F Y ++ R+ K+ +A++++E ++ + D + +I+ + SG+ +EA+
Sbjct: 553 QPDKFVYTTLIDGFIRSDKLSDARKIFEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVM 612
Query: 128 IYNEMRSSPATPISLPFRVILKG 150
+ MR P + ++ G
Sbjct: 613 CMSSMRKVGCIPDEFTYTTLIDG 635
>gi|255661024|gb|ACU25681.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
Length = 376
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 5/133 (3%)
Query: 23 DRFIKSHVSRLLKSDLV---SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLM 79
+R K V R + D V ++L F R ++ C +L+D++ +E + + ++
Sbjct: 10 ERVYKEMVERKVSPDAVVYNTMLNGFFRSQRIKDCFELWDLMGRE--GSRTVASFNIIMR 67
Query: 80 MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
L N KV EA +WE +K + D T+G ++ F +G ++++ +
Sbjct: 68 GLFDNGKVDEAVSIWELMKESGFVEDSTTYGILVHGFCKNGHNNKSLHVLEIAEQKGGVL 127
Query: 140 ISLPFRVILKGLI 152
+ + ++ GL
Sbjct: 128 DAFAYSAMINGLC 140
>gi|212274769|ref|NP_001130292.1| uncharacterized protein LOC100191386 [Zea mays]
gi|194688764|gb|ACF78466.1| unknown [Zea mays]
Length = 510
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 48/95 (50%)
Query: 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100
+LA R+ + + L+ +R +PD+ + +L + EA +++ ++R
Sbjct: 122 ILAALARRGRHLAAVSLFSHMRAVARVKPDISVFNIILNAYGQLDLAREADRLFWSMRRA 181
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135
V T+ ++R + D+GL EA+ +++ MRS+
Sbjct: 182 GVPPSVVTYNTMLRVYGDAGLFGEAVHLFDLMRST 216
>gi|125562731|gb|EAZ08111.1| hypothetical protein OsI_30376 [Oryza sativa Indica Group]
Length = 794
Score = 38.9 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 6/124 (4%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
+ DV++K+ + PD F Y +L +L + + A + ++ + ++ D T +I
Sbjct: 367 LSFLDVMKKK-GFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMIC 425
Query: 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174
GL EAM I++EM P + + ++ G +RE ++ LF M +
Sbjct: 426 GLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGF-----YREGRLEEARMLFHKMEM 480
Query: 175 YDPP 178
+ P
Sbjct: 481 GNNP 484
>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Glycine max]
Length = 687
Score = 38.9 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P+ Y ++ L+ + ++ +AK++ +D+ R + +T+ +IR + + G EA +
Sbjct: 235 PNDVTYNVLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRL 294
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFRE--KVKDDFL--ELFPDMIVYD 176
EM S A P + + I+ GL + + K+ D + L PD++ Y+
Sbjct: 295 GEEMLSRGAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYN 346
>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
Length = 600
Score = 38.9 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 40/83 (48%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P+ Y ++ LA+ ++ EAK++ ED+ + V D + +I DS + A +
Sbjct: 492 PECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDV 551
Query: 129 YNEMRSSPATPISLPFRVILKGL 151
+ EM P + ++V+ +G
Sbjct: 552 FQEMMKRGCAPNEVTYKVLRRGF 574
Score = 37.0 bits (84), Expect = 4.4, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 38/84 (45%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+ Y ++ +L +V EA+ V++ + + D T+G II+ FS G A I
Sbjct: 316 PDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEI 375
Query: 129 YNEMRSSPATPISLPFRVILKGLI 152
M S P + ++ G +
Sbjct: 376 LELMAKSGVGPDCFAYNSLMDGYV 399
>gi|449447783|ref|XP_004141647.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g73710-like [Cucumis sativus]
Length = 1020
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 46/94 (48%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD Y ++ M + V EA+++ +++R TF +I +++ GL S+A+ +
Sbjct: 564 PDECTYNSLIQMFSGGDLVDEARRLLTEMQRMGFKPTCQTFSAVIASYARLGLMSDAVEV 623
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
Y+ M + P + + V++ G + E +K
Sbjct: 624 YDMMVHADVEPNEILYGVLVNGFAEIGQAEEALK 657
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL 97
L S++ F + + ++Y+ + K + D M+ + A V EAKQV+EDL
Sbjct: 674 LTSLIKAFSKVGSLEDARRIYNRM-KNMEDGADTIASNSMINLYADLGMVSEAKQVFEDL 732
Query: 98 KREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEF 157
RE D +F +I + + G+ EA+ + EM+ S + FR +++ +
Sbjct: 733 -RERGYADGVSFATMIYLYKNIGMLDEAIEVAEEMKESGLLRDATSFRKVIECYAINGQV 791
Query: 158 RE 159
RE
Sbjct: 792 RE 793
Score = 37.0 bits (84), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 42 LAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE 101
L+ + + +K Y +R E+ PD+ +R +L +L+ V + + V ++++
Sbjct: 398 LSLYANNGNIDGALKCYRRIR-EVGLFPDVVTHRALLHVLSERNMVEDVENVIAEMEKSH 456
Query: 102 VLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133
+L D+H+ +I+ + + GL A + + R
Sbjct: 457 ILLDEHSLPRVIKMYINEGLLDRAKILLEKYR 488
Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 39/91 (42%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
Y P++ Y +L L + +K E + W ++ V+ +T+G +I + GL EA+
Sbjct: 157 YVPNVIHYNIVLRTLGQAQKWDELRLCWNEMAENGVVPTNNTYGMLIDVYGKVGLVKEAL 216
Query: 127 FIYNEMRSSPATPISLPFRVILKGLIPYPEF 157
M P + +++ L EF
Sbjct: 217 LWIKHMTVRGIFPDEVTMNTVVRVLKDAGEF 247
>gi|12324355|gb|AAG52147.1|AC022355_8 hypothetical protein; 57683-56685 [Arabidopsis thaliana]
Length = 332
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+ Y M+ R+ + +A+Q+ D+ ++ D TF +I A G SEA I
Sbjct: 109 PDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEI 168
Query: 129 YNEMRSSPATPISLPFRVILKG 150
Y +M P ++ + ++ G
Sbjct: 169 YGDMLRRGIFPTTITYNSMIDG 190
>gi|414585751|tpg|DAA36322.1| TPA: hypothetical protein ZEAMMB73_184989 [Zea mays]
Length = 603
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 55/114 (48%), Gaps = 10/114 (8%)
Query: 22 FDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMML 81
FDR + ++ +++S+ + +R + + L K+ P++ Y +L M
Sbjct: 428 FDRCVVAY------GNMISMYGKIRRASEATRLLALM----KQKGCEPNVLVYNSLLDMH 477
Query: 82 ARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135
R +A+++W+++ R +V D+ ++ II A + +G M +Y E R +
Sbjct: 478 GRLGNSKQAEKIWKEMVRRKVRPDRISYTAIILANNRAGELDRCMELYQEFRET 531
>gi|413922815|gb|AFW62747.1| hypothetical protein ZEAMMB73_141955 [Zea mays]
Length = 301
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 16/121 (13%)
Query: 13 KRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMF 72
K + S+ + D I +H+S S L+S+ A + + KLY+ + R D+
Sbjct: 30 KAIHSYMLVSDMIIGAHIS----SALISLYASCANME---MAEKLYNEMP-----RKDLV 77
Query: 73 FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEM 132
M+ ARN+KV A+ +++ + ++V+ ++ +I + DS P+EA+ ++N M
Sbjct: 78 SSTAMVSRYARNRKVEIARSIFDGMPEKDVV----SWSAMISGYVDSNQPNEALSLFNGM 133
Query: 133 R 133
+
Sbjct: 134 Q 134
>gi|356495741|ref|XP_003516732.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Glycine max]
Length = 523
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%)
Query: 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIY 129
D+ Y ++L L + +V EAK ++ D+ + V D T+ I ++ D+ A +
Sbjct: 250 DLLAYNNLLQALCKGGRVDEAKNIFHDMLSKRVEPDAFTYSIFIHSYCDADDVQSAFRVL 309
Query: 130 NEMRSSPATPISLPFRVILKGLI 152
++MR P + I+K L
Sbjct: 310 DKMRRYNLLPNVFTYNCIIKQLC 332
>gi|27476102|gb|AAO17033.1| Hypothetical protein [Oryza sativa Japonica Group]
gi|108705848|gb|ABF93643.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125584686|gb|EAZ25350.1| hypothetical protein OsJ_09164 [Oryza sativa Japonica Group]
Length = 450
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
+++++++RK+ WY+P Y +LMML + ++ A +++ + E + + ++
Sbjct: 73 LEIFELLRKQQWYKPRSQTYARLLMMLGKCQQPGAATALFKVMLSERLKPTVDVYTALVG 132
Query: 115 AFSDSGLPSEAMFIYNEMRS-SPATPISLPFRVILK 149
A+ SGL +A+ +M+ + P F V++
Sbjct: 133 AYGYSGLLDQALATVEQMKGVADCKPDEYTFSVLIN 168
>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
Length = 775
Score = 38.9 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
+E +PD Y ++ ++N + A++V + + V+ T+G +I A+ +G
Sbjct: 586 EEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNG 645
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVY 175
+EAM I+ +M+++ P P VI LI KVK + L DM ++
Sbjct: 646 NEAMEIFKDMKAASKVP---PNTVIYNILINSLCKNNKVKSA-VSLMEDMKIW 694
>gi|224126121|ref|XP_002329666.1| predicted protein [Populus trichocarpa]
gi|222870547|gb|EEF07678.1| predicted protein [Populus trichocarpa]
Length = 821
Score = 38.9 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 30/128 (23%), Positives = 60/128 (46%), Gaps = 4/128 (3%)
Query: 35 KSDLV---SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAK 91
K DLV S+L+ F R++ ++ ++ +E +PD+ Y ++ + AR + +A+
Sbjct: 627 KPDLVVFNSMLSMFSRKNMHDRAHEIMHLI-QECGLQPDLVTYNSLMDLYARGGECWKAE 685
Query: 92 QVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
++ +L+ D ++ +I+ F GL EA+ +EM S P + + + G
Sbjct: 686 EILRELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTLSEMISRGIRPCIVTYNTFVGGY 745
Query: 152 IPYPEFRE 159
F E
Sbjct: 746 AAKGMFAE 753
>gi|71027557|ref|XP_763422.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350375|gb|EAN31139.1| hypothetical protein TP03_0402 [Theileria parva]
Length = 596
Score = 38.9 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 51/96 (53%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
M+L++ +++ +P+ Y ++ +NK++ +A +++ ++++ V + T+ +I
Sbjct: 224 MRLFEDMKERGKVKPNTIMYTTLIKGYGQNKQLDKAMRIFRLMQQDGVQPNTVTYNSVID 283
Query: 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG 150
A + G + A + EM SS P + F I+KG
Sbjct: 284 ACARVGEMNSATRLLEEMLSSGIEPDLITFSTIIKG 319
>gi|42570531|ref|NP_850859.2| SNF1-like protein kinase [Arabidopsis thaliana]
gi|75160582|sp|Q8S9D1.1|PP395_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g21222; AltName: Full=SNF1-like protein kinase AtC401
gi|19071860|dbj|BAB85674.1| SNF1-like protein kinase [Arabidopsis thaliana]
gi|332005563|gb|AED92946.1| SNF1-like protein kinase [Arabidopsis thaliana]
Length = 831
Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
++P + Y ++ L R K + +++ + D F II A S+SG +AM
Sbjct: 350 HKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAM 409
Query: 127 FIYNEMRSSPATPISLPFRVILKG 150
I+ +M+ S P + F ++KG
Sbjct: 410 KIFEKMKESGCKPTASTFNTLIKG 433
>gi|255661210|gb|ACU25774.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 426
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 6/125 (4%)
Query: 31 SRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVR------KEIWYRPDMFFYRDMLMMLARN 84
SRL ++ + L + VF KL+ R +E PD Y +L M N
Sbjct: 68 SRLKRAGITPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTLLTMYVEN 127
Query: 85 KKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPF 144
+K +EA V+ +++ + L D T +I + + EA ++ MR P + +
Sbjct: 128 QKFLEALSVFAEMREIKCLVDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVGIEPNVVSY 187
Query: 145 RVILK 149
+L+
Sbjct: 188 NTLLR 192
>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
Length = 724
Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD+F + ++ L R ++ +A ++ D+ E V+ + TF +I AF G EA+
Sbjct: 484 KPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALK 543
Query: 128 IYNEM--RSSPATPIS 141
+ N+M R P I+
Sbjct: 544 LVNDMLFRGCPLDEIT 559
>gi|19071826|dbj|BAB85657.1| PnC401 homologue [Arabidopsis thaliana]
Length = 831
Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
++P + Y ++ L R K + +++ + D F II A S+SG +AM
Sbjct: 350 HKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAM 409
Query: 127 FIYNEMRSSPATPISLPFRVILKG 150
I+ +M+ S P + F ++KG
Sbjct: 410 KIFEKMKESGCKPTASTFNTLIKG 433
>gi|347954472|gb|AEP33736.1| chlororespiratory reduction 21, partial [Raphanus sativus]
Length = 806
Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 56/106 (52%), Gaps = 9/106 (8%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
+ D+ ++ M A+ +V+AK+V++ +++++ + ++ A+++SGL EA+
Sbjct: 381 FESDIGLASTVIDMYAKCGSIVDAKRVFDSTVQKDLIL----WNTLLAAYAESGLSGEAL 436
Query: 127 FIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
++ EM+ P ++ + +I+ L FR D+ E+F M
Sbjct: 437 RLFYEMQLESVPPNAITWNLIILSL-----FRNGQVDEAKEMFLQM 477
>gi|297808179|ref|XP_002871973.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
gi|297317810|gb|EFH48232.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
Length = 831
Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
++P + Y ++ L R K + +++ + D F II A S+SG +AM
Sbjct: 350 HKPSIITYTTLVTALTRQKHFHSLLSLISKVQKNGLRPDTILFNAIINASSESGNLDQAM 409
Query: 127 FIYNEMRSSPATPISLPFRVILKG 150
I+ +M+ S P + F ++KG
Sbjct: 410 KIFEKMKESGCKPTASTFNTLIKG 433
>gi|225438599|ref|XP_002276540.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
chloroplastic [Vitis vinifera]
gi|296082481|emb|CBI21486.3| unnamed protein product [Vitis vinifera]
Length = 489
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 57/128 (44%), Gaps = 14/128 (10%)
Query: 22 FDRFIKSHV-SRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMM 80
++ I +H+ SR L+ L F + + C +P++ Y +L
Sbjct: 172 YNALITAHLHSRDKSKALIKALGYFDKMKGMERC-------------KPNIVTYNILLRA 218
Query: 81 LARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPI 140
A+ + V +A ++++L V D TF ++ A+ +G+ E + + M+S+ P
Sbjct: 219 FAQAQNVNQANALFKELNESIVSPDIFTFNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 278
Query: 141 SLPFRVIL 148
+ F V++
Sbjct: 279 IITFNVLI 286
>gi|29294052|gb|AAO73889.1| protein kinase family [Arabidopsis thaliana]
Length = 854
Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
++P + Y ++ L R K + +++ + D F II A S+SG +AM
Sbjct: 373 HKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAM 432
Query: 127 FIYNEMRSSPATPISLPFRVILKG 150
I+ +M+ S P + F ++KG
Sbjct: 433 KIFEKMKESGCKPTASTFNTLIKG 456
>gi|255556157|ref|XP_002519113.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541776|gb|EEF43324.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 486
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/178 (20%), Positives = 71/178 (39%), Gaps = 27/178 (15%)
Query: 7 MVAKELKRLQSHPVRFDRFIKS-----------HVSRLLKSDLVSVLAEFQR-----QDQ 50
++ K + S P FD IKS + RLL+S +S L +
Sbjct: 148 ILVKTYRECDSAPFVFDLLIKSCLELKKIDDGLKIVRLLRSRGISPLISTCNFLVSWVSK 207
Query: 51 VFLCMKLYDVVR-----------KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
C Y V R + I RP++ + +++M R+ ++ ++VW +++R
Sbjct: 208 CKGCYAGYGVFREVFEVNDNEGKRVIKVRPNVHTFNELMMGFYRDGELEMVEEVWSEMER 267
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEF 157
E + + ++ ++ F D G E ++ EMR+ + + ++ G E
Sbjct: 268 FECVPNGFSYSVLMTVFLDVGRTKEIEKLWEEMRAKGIKGDVVAYNTVIGGFCKIGEI 325
>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
Length = 974
Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 74 YRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133
Y ++ L +N KV +A++++ +++ + + D ++G +I FS G +A I++EM
Sbjct: 595 YTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMV 654
Query: 134 SSPATPISLPFRVILKGLIPYPEFREKVKDDFLE-----LFPDMIVY 175
TP + + ++L G E EK K+ E L P+ + Y
Sbjct: 655 EEGLTPNVIIYNMLLGGFCRSGEI-EKAKELLDEMSVKGLHPNAVTY 700
>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
Length = 974
Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 74 YRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133
Y ++ L +N KV +A++++ +++ + + D ++G +I FS G +A I++EM
Sbjct: 595 YTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMV 654
Query: 134 SSPATPISLPFRVILKGLIPYPEFREKVKDDFLE-----LFPDMIVY 175
TP + + ++L G E EK K+ E L P+ + Y
Sbjct: 655 EEGLTPNVIIYNMLLGGFCRSGEI-EKAKELLDEMSVKGLHPNAVTY 700
>gi|449444522|ref|XP_004140023.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Cucumis sativus]
Length = 783
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 41/85 (48%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD+F + +L L R + + A V+ + + + D T+G +I + +A+
Sbjct: 160 KPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDALV 219
Query: 128 IYNEMRSSPATPISLPFRVILKGLI 152
+++EM P + + ++L GL
Sbjct: 220 LFDEMTDRGILPNQIIYSIVLSGLC 244
>gi|255661206|gb|ACU25772.1| pentatricopeptide repeat-containing protein [Citharexylum
montevidense]
Length = 399
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 6/125 (4%)
Query: 31 SRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVR------KEIWYRPDMFFYRDMLMMLARN 84
SRL +S + L + VF KL+ R K PD Y +L M N
Sbjct: 41 SRLKRSGIXPDLVAYNSMINVFGKAKLFKEARSLIXEMKTAGVMPDTVSYSTLLTMYVEN 100
Query: 85 KKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPF 144
+K +EA V+ +++ + FD T +I + + EA ++ MR P + +
Sbjct: 101 QKFLEALSVFAEMREIKCSFDLTTCNIMIDVYGQLDMAKEADKLFWSMRKIGIEPNVISY 160
Query: 145 RVILK 149
+L+
Sbjct: 161 NTLLR 165
>gi|8778411|gb|AAF79419.1|AC025808_1 F18O14.1 [Arabidopsis thaliana]
Length = 689
Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 29 HVSRLLKSD-------LVSVLAE-FQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMM 80
HV LLK + VL + + R Q+ ++++D + EI R + ++
Sbjct: 102 HVFELLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNM-IEIGVRTNTTICNSLING 160
Query: 81 LARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPI 140
++ ++VEA+Q++ + + D HT+ ++ + +G EA+ + ++M P
Sbjct: 161 YCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPT 220
Query: 141 SLPFRVILKG 150
+ + ++LKG
Sbjct: 221 VMTYNILLKG 230
>gi|297833654|ref|XP_002884709.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330549|gb|EFH60968.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 689
Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 58/118 (49%)
Query: 45 FQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF 104
F ++ + M+L+D + ++ P++ + M+ L++ +V + ++W+ +K+ E
Sbjct: 229 FLKEKDHKMAMQLWDKLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWDRMKQNEREK 288
Query: 105 DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
D +T+ +I D G +A ++NE+ A + + +L G + +E ++
Sbjct: 289 DLYTYSSLIHGLCDEGNVDKAESVFNELVERKAFIDVVTYNTMLGGFCRCGKIKESLE 346
>gi|115450301|ref|NP_001048751.1| Os03g0115300 [Oryza sativa Japonica Group]
gi|113547222|dbj|BAF10665.1| Os03g0115300 [Oryza sativa Japonica Group]
Length = 442
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
+++++++RK+ WY+P Y +LMML + ++ A +++ + E + + ++
Sbjct: 73 LEIFELLRKQQWYKPRSQTYARLLMMLGKCQQPGAATALFKVMLSERLKPTVDVYTALVG 132
Query: 115 AFSDSGLPSEAMFIYNEMRS-SPATPISLPFRVILK 149
A+ SGL +A+ +M+ + P F V++
Sbjct: 133 AYGYSGLLDQALATVEQMKGVADCKPDEYTFSVLIN 168
>gi|297733647|emb|CBI14894.3| unnamed protein product [Vitis vinifera]
Length = 746
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWE 95
+ +S L+ R D + K+YD + RPD M+ ++ ++ AK WE
Sbjct: 246 NSAISGLSSCGRYDDAW---KVYDEMETNN-IRPDHVTCSIMITVMRKDGH--SAKDAWE 299
Query: 96 ---DLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
+ R+ V + G +I++F D GL +EA+ I +EM + ++ + ++
Sbjct: 300 FFQRMNRKGVKWSLEVLGALIKSFCDEGLKNEALIIQSEMEKKGISSNAIVYNTLM 355
>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 614
Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 22/107 (20%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+P+++ Y ++ L +N ++ +A+ V++DL + D + ++ GL EA+
Sbjct: 446 QPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALS 505
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174
+ ++M + P ++ + +++ L F D ++L +MIV
Sbjct: 506 LVSKMEDNGCIPDAVTYETLVRAL-----FENDKNDKAVKLLREMIV 547
>gi|224054488|ref|XP_002298285.1| predicted protein [Populus trichocarpa]
gi|222845543|gb|EEE83090.1| predicted protein [Populus trichocarpa]
Length = 575
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 60/128 (46%), Gaps = 9/128 (7%)
Query: 56 KLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
K+YD +++ RPD+ Y ++ R ++ EA V+E++ V + ++ A
Sbjct: 277 KIYDQMQRS-GLRPDVVSYALLIKAYGRARREEEALAVFEEMLDAGVRPSHKAYNILLDA 335
Query: 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE------FREKVKDDFLELF 169
F+ SG+ +A ++ MR TP + +L + + F ++++ D L+
Sbjct: 336 FAISGMVEQARVVFKSMRRDRCTPDLCSYTTMLSAYVNASDMEGAENFFKRLRQDGLK-- 393
Query: 170 PDMIVYDP 177
P+++ Y
Sbjct: 394 PNVVTYGA 401
>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 665
Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 14/116 (12%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD + Y ++ L +V +A + +D+ R E T+ ++ A S +AM +
Sbjct: 135 PDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKV 194
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELF---------PDMIVY 175
+EMR+ TP + + VI+ G+ RE DD ++ PD + Y
Sbjct: 195 LDEMRAKGCTPNIVTYNVIINGMC-----REDRVDDARQILNRLSSYGFQPDTVSY 245
>gi|302789998|ref|XP_002976767.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
gi|300155805|gb|EFJ22436.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
Length = 669
Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 35/71 (49%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD Y ++ M R +V EA +++E LK D T+G I ++ +G M +
Sbjct: 211 PDEVTYNSVIDMYGRVGRVNEAVELYEKLKSVNWKLDTVTYGAIANVYARAGDYQSIMQL 270
Query: 129 YNEMRSSPATP 139
EMR S ++P
Sbjct: 271 VQEMRDSGSSP 281
>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
Length = 1153
Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 46/87 (52%)
Query: 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123
E+ PD+ Y ++ L +++++ EA ++ ++K++ ++ + +T+ +I +G S
Sbjct: 976 ELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKAS 1035
Query: 124 EAMFIYNEMRSSPATPISLPFRVILKG 150
EA +Y E+ P + +++G
Sbjct: 1036 EAAQMYEELLIKGWKPNVFTYNALIRG 1062
>gi|225456802|ref|XP_002275673.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
chloroplastic [Vitis vinifera]
gi|147821419|emb|CAN76897.1| hypothetical protein VITISV_010606 [Vitis vinifera]
Length = 692
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWE 95
+ +S L+ R D + K+YD + RPD M+ ++ ++ AK WE
Sbjct: 246 NSAISGLSSCGRYDDAW---KVYDEMETNN-IRPDHVTCSIMITVMRKDGH--SAKDAWE 299
Query: 96 ---DLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
+ R+ V + G +I++F D GL +EA+ I +EM + ++ + ++
Sbjct: 300 FFQRMNRKGVKWSLEVLGALIKSFCDEGLKNEALIIQSEMEKKGISSNAIVYNTLM 355
>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
Length = 687
Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 42/83 (50%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+F Y M++ + + +A+Q+ +++ ++ D T+ +I AF G EA +
Sbjct: 288 PDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEEL 347
Query: 129 YNEMRSSPATPISLPFRVILKGL 151
Y+EM P ++ + ++ G
Sbjct: 348 YDEMLPRGIIPNTITYSSMIDGF 370
>gi|242046162|ref|XP_002460952.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
gi|241924329|gb|EER97473.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
Length = 796
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 43/89 (48%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
+ Y PD+ + +L + +N E V++++K+ + ++ T+ +I ++S GL
Sbjct: 423 RSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLF 482
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGL 151
+AM IY M + P + +L L
Sbjct: 483 DQAMEIYKRMIEAGIYPDISTYNAVLSAL 511
>gi|168016406|ref|XP_001760740.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688100|gb|EDQ74479.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 466
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 67/137 (48%), Gaps = 7/137 (5%)
Query: 47 RQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ 106
+Q++ ++++++VR + WY ++ Y +L MLAR K+ A +++ L ++++
Sbjct: 96 KQNEWESALRVFELVRIQEWYTAEVSTYVKLLTMLARVKQPQAASNLFDFLLQDKLRPTL 155
Query: 107 HTFGDIIRAFSDSGLPSEAMFIYNEMRS-SPATPISLPFRVILKGLIPYPEFREKVKDDF 165
F +I F+ S L +A ++ +MR P + ++KG + ++ K F
Sbjct: 156 EIFTALITVFTKSNLLKKAFEVFEQMRLFDGCLPDKYAYTTMIKGCCDAGLY-DQAKKLF 214
Query: 166 LELF-----PDMIVYDP 177
E+ P ++ Y+
Sbjct: 215 NEMMREGVEPTIVTYNT 231
>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
Length = 687
Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 42/83 (50%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+F Y M++ + + +A+Q+ +++ ++ D T+ +I AF G EA +
Sbjct: 288 PDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEEL 347
Query: 129 YNEMRSSPATPISLPFRVILKGL 151
Y+EM P ++ + ++ G
Sbjct: 348 YDEMLPRGIIPNTITYSSMIDGF 370
>gi|449449098|ref|XP_004142302.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g01740-like [Cucumis sativus]
gi|449521427|ref|XP_004167731.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g01740-like [Cucumis sativus]
Length = 585
Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 45/87 (51%)
Query: 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123
E + PD F Y + L + +++A V + + +E V D T+ +I ++ GL
Sbjct: 429 EAGFVPDKFVYTSWIAELCKQGNLLKAFMVKKRMVQEHVEPDLLTYSSLIGGLAEKGLMI 488
Query: 124 EAMFIYNEMRSSPATPISLPFRVILKG 150
EA ++++M + TP + + ++++G
Sbjct: 489 EAKQVFDDMLNKGITPDFVSYDILIRG 515
>gi|42562903|ref|NP_176512.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|114050643|gb|ABI49471.1| At1g63230 [Arabidopsis thaliana]
gi|332195952|gb|AEE34073.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 323
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+ Y M+ R+ + +A+Q+ D+ ++ D TF +I A G SEA I
Sbjct: 109 PDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEI 168
Query: 129 YNEMRSSPATPISLPFRVILKG 150
Y +M P ++ + ++ G
Sbjct: 169 YGDMLRRGIFPTTITYNSMIDG 190
>gi|302142186|emb|CBI19389.3| unnamed protein product [Vitis vinifera]
Length = 365
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 76/187 (40%), Gaps = 19/187 (10%)
Query: 8 VAKELKRLQSHPVRFDRFIKSHVSRLLKSD------------LVSVLAEFQRQDQVFLCM 55
+A KR + + I S++L S+ L ++L +F + ++ +
Sbjct: 131 IAVSGKRFRHAETLIEEVIAGACSKMLNSEDCKPSLETYTLLLNALLRKFNKLTVCYVYL 190
Query: 56 KLYDVVRKEIWYR---PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDI 112
+ K++ PD F ++ ++ +V EA +V+ ++ + +T+G I
Sbjct: 191 HAVRSLTKQMKVSGVIPDTFALNMIIKAYSKCLEVDEAIRVFREMGLYGCEPNAYTYGYI 250
Query: 113 IRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDF----LEL 168
+ G S+ + Y EMRS P S + +++ L F E K F +
Sbjct: 251 ANGLCEKGRVSQGLGFYREMRSKDLVPSSSTYVILICSLSMERRFEEATKILFDMLGNSM 310
Query: 169 FPDMIVY 175
PD++ Y
Sbjct: 311 APDLLTY 317
>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
Length = 687
Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 42/83 (50%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+F Y M++ + + +A+Q+ +++ ++ D T+ +I AF G EA +
Sbjct: 288 PDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEEL 347
Query: 129 YNEMRSSPATPISLPFRVILKGL 151
Y+EM P ++ + ++ G
Sbjct: 348 YDEMLPRGIIPNTITYSSMIDGF 370
>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
Length = 687
Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 42/83 (50%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+F Y M++ + + +A+Q+ +++ ++ D T+ +I AF G EA +
Sbjct: 288 PDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEEL 347
Query: 129 YNEMRSSPATPISLPFRVILKGL 151
Y+EM P ++ + ++ G
Sbjct: 348 YDEMLPRGIIPNTITYSSMIDGF 370
>gi|147767583|emb|CAN60200.1| hypothetical protein VITISV_039678 [Vitis vinifera]
Length = 525
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 45/98 (45%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
++LY +++E PDM Y ++ M + ++ +++W+D+K D ++ +I
Sbjct: 392 LRLYRKMKEEYSCLPDMHTYNILVGMFVKLNRMEIVQEIWDDMKTSGAGPDLDSYTLLIH 451
Query: 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
+ EA + EM P + F + +GLI
Sbjct: 452 GLCEKQKWKEACHFFVEMIEKGYLPQKITFETLYRGLI 489
>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
Length = 687
Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 42/83 (50%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+F Y M++ + + +A+Q+ +++ ++ D T+ +I AF G EA +
Sbjct: 288 PDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEEL 347
Query: 129 YNEMRSSPATPISLPFRVILKGL 151
Y+EM P ++ + ++ G
Sbjct: 348 YDEMLPRGIIPNTITYSSMIDGF 370
>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 504
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
RPD Y ++ L + + +A ++ + + E+ D TF +I A G SEA
Sbjct: 218 RPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEE 277
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKD-DFL---ELFPDMIVY 175
+Y EM P + + +++ GL Y E + F+ FPD++ Y
Sbjct: 278 LYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTY 329
>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
Length = 855
Score = 38.5 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 40/83 (48%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P+ Y ++ LA+ ++ EAK++ ED+ + V D + +I DS + A +
Sbjct: 747 PECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDV 806
Query: 129 YNEMRSSPATPISLPFRVILKGL 151
+ EM P + ++V+ +G
Sbjct: 807 FQEMMKRGCAPNEVTYKVLRRGF 829
Score = 37.4 bits (85), Expect = 3.5, Method: Composition-based stats.
Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 42/147 (28%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG-------- 120
PD+ Y ++ +L +V EA+ V++ + + D T+G II+ FS G
Sbjct: 571 PDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEI 630
Query: 121 ---------------------------LPSEAMFIYNEMRSSPATPISLPFRVILKGLIP 153
+A +Y+ M +S P ++ F V++ GL
Sbjct: 631 LELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGL-- 688
Query: 154 YPEFREKVKDDFLELFPDMIVYD--PP 178
F++ D LF +M+ D PP
Sbjct: 689 ---FKDGKTDRAFSLFKEMLEKDEVPP 712
>gi|225431703|ref|XP_002264696.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
mitochondrial [Vitis vinifera]
gi|296088528|emb|CBI37519.3| unnamed protein product [Vitis vinifera]
Length = 525
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 45/98 (45%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
++LY +++E PDM Y ++ M + ++ +++W+D+K D ++ +I
Sbjct: 392 LRLYRKMKEEYSCLPDMHTYNILVGMFVKLNRMEIVQEIWDDMKTSGAGPDLDSYTLLIH 451
Query: 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
+ EA + EM P + F + +GLI
Sbjct: 452 GLCEKQKWKEACHFFVEMIEKGYLPQKITFETLYRGLI 489
>gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula]
gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula]
gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA-FSDSGLPSEAM 126
+PD+ +++ +L R+ ++ EA +++E+++ + T+ II++ F D PSEA
Sbjct: 333 KPDVVLMNNLINILGRSDRLKEAVELFEEMRLLNCTPNVVTYNTIIKSLFEDKAPPSEAS 392
Query: 127 FIYNEMRSSPATPISLPFRVILKGLI 152
M+ P S + +++ G
Sbjct: 393 SWLERMKKDGVVPSSFTYSILIDGFC 418
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 59/137 (43%), Gaps = 9/137 (6%)
Query: 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWE 95
S L+ + R ++ L ++ D E + P Y ++ L + K+ A ++++
Sbjct: 411 SILIDGFCKTNRVEKALLLLEEMD----EKGFPPCPAAYCSLINSLGKAKRYEAANELFQ 466
Query: 96 DLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYP 155
+LK + +I+ F G +EAM ++NEM+ P + ++ G++
Sbjct: 467 ELKENCGSSSVRVYAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGMV--- 523
Query: 156 EFREKVKDDFLELFPDM 172
R + D+ LF M
Sbjct: 524 --RADMMDEAFSLFRTM 538
>gi|449527621|ref|XP_004170808.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g13630-like [Cucumis
sativus]
Length = 830
Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 66/139 (47%), Gaps = 11/139 (7%)
Query: 45 FQRQDQVFLCMKLY-DVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVL 103
+ R D + M+LY ++ + I P + + ++ R ++EA+++ E ++ + ++
Sbjct: 526 YVRLDGIAEAMQLYYKMIERGI--TPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLV 583
Query: 104 FDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKD 163
T+ ++ A+ + G E +EM ++ P + + V++KGL + E ++
Sbjct: 584 PSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQ- 642
Query: 164 DFLE------LFPDMIVYD 176
LE L PD + Y+
Sbjct: 643 -LLEYMYAKGLLPDSVTYN 660
>gi|449453449|ref|XP_004144470.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g13630-like [Cucumis sativus]
Length = 830
Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 66/139 (47%), Gaps = 11/139 (7%)
Query: 45 FQRQDQVFLCMKLY-DVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVL 103
+ R D + M+LY ++ + I P + + ++ R ++EA+++ E ++ + ++
Sbjct: 526 YVRLDGIAEAMQLYYKMIERGI--TPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLV 583
Query: 104 FDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKD 163
T+ ++ A+ + G E +EM ++ P + + V++KGL + E ++
Sbjct: 584 PSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQ- 642
Query: 164 DFLE------LFPDMIVYD 176
LE L PD + Y+
Sbjct: 643 -LLEYMYAKGLLPDSVTYN 660
>gi|242078641|ref|XP_002444089.1| hypothetical protein SORBIDRAFT_07g007540 [Sorghum bicolor]
gi|241940439|gb|EES13584.1| hypothetical protein SORBIDRAFT_07g007540 [Sorghum bicolor]
Length = 942
Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 45/93 (48%)
Query: 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIY 129
D + Y M+ + R + + V +LK V+ D +++ +I+A+ + +P +A+ +
Sbjct: 833 DHYTYNIMINIYGRRGWIEDVSNVLAELKDRGVVPDLYSYNTLIKAYGIARMPEDAVKLM 892
Query: 130 NEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
EMR +P + + ++ L F E VK
Sbjct: 893 QEMRIKGISPDRVTYANLIAALQRNENFLEAVK 925
>gi|147791423|emb|CAN76850.1| hypothetical protein VITISV_005998 [Vitis vinifera]
Length = 340
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/96 (18%), Positives = 42/96 (43%)
Query: 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123
++ PD+ + +L +N + +++W+ +K+ V + ++ +R S
Sbjct: 152 KVGLEPDLITFNTLLNAFYQNGSYADGEKIWDLMKKNNVAPNVRSYNAKLRGVISENRMS 211
Query: 124 EAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
EA+ + +EM++S P ++KG E
Sbjct: 212 EAVELIDEMKTSGIKPDVFTLNSLMKGFCNAGNLEE 247
>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
Length = 895
Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 10/116 (8%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD F Y ++ L + ++ EAK + +++ + + +G ++ F G +EA I
Sbjct: 311 PDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDI 370
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPE-------FREKVKDDFLELFPDMIVYDP 177
EM S+ P + + +++GL + +E +K + L PD Y+P
Sbjct: 371 LKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIK---VGLRPDTFTYNP 423
>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
repeats [Arabidopsis thaliana]
gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 632
Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 30/154 (19%), Positives = 72/154 (46%), Gaps = 11/154 (7%)
Query: 24 RFIKSHVSRLLKSDLVSVLA---EFQRQDQVFLCMKLYD-VVRKEIWYRPDMFFYRDMLM 79
R + + R + ++V+ A F ++ ++ KLYD ++++ I PD+F Y ++
Sbjct: 314 RLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI--DPDIFTYSSLIN 371
Query: 80 MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
+ ++ EAK ++E + ++ + T+ +I+ F + E M ++ EM
Sbjct: 372 GFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVG 431
Query: 140 ISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
++ + ++ G F+ + D+ +F M+
Sbjct: 432 NTVTYTTLIHGF-----FQARDCDNAQMVFKQMV 460
Score = 36.6 bits (83), Expect = 4.8, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 8/114 (7%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
RPD+F Y ++ L + +A ++ D+ ++ + TF +I AF G EA
Sbjct: 290 RPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEK 349
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLEL------FPDMIVY 175
+Y+EM P + ++ G + E EL FP+++ Y
Sbjct: 350 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE--AKHMFELMISKDCFPNVVTY 401
>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 864
Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 38/155 (24%), Positives = 72/155 (46%), Gaps = 11/155 (7%)
Query: 30 VSRLLKSDLV-SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVV 88
V LL S +V S+L F R + +K++D++ +E P+ Y ++ L ++
Sbjct: 224 VGFLLDSHIVTSLLLGFCRGLNLRDALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLE 283
Query: 89 EAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
EA + + + + T+ +I+A D GL +A +++EM + P + V++
Sbjct: 284 EAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLI 343
Query: 149 KGLIPYPEF-------REKVKDDFLELFPDMIVYD 176
GL + R+ VKD +FP +I Y+
Sbjct: 344 DGLCRDGKIEEANGVCRKMVKDG---IFPSVITYN 375
>gi|357517875|ref|XP_003629226.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523248|gb|AET03702.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 510
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 84 NKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLP 143
V A++V++DL +V + ++I+ +++ G +EA+ +YN MR S A P
Sbjct: 67 GTNVEHARKVFDDLSERDVF----CWNNVIKGYANMGPFAEALHVYNAMRLSGAAPNRYT 122
Query: 144 FRVILK 149
+ +LK
Sbjct: 123 YPFVLK 128
>gi|296088921|emb|CBI38481.3| unnamed protein product [Vitis vinifera]
Length = 665
Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 65 IWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSE 124
+ Y PD + +L++ A+ + + +++DL ++ ++ ++ +I + GL E
Sbjct: 120 VGYYPDEYLKTKLLILHAKTGDLDTSHILFDDLSKKSLI----SWNAMIAGYVQKGLEEE 175
Query: 125 AMFIYNEMRSSPATPISLPFRVILKG 150
+ +Y+EMR S TP F + +
Sbjct: 176 GLNLYDEMRQSGLTPDQYTFASVFRA 201
>gi|255551961|ref|XP_002517025.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543660|gb|EEF45188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 640
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++ ++ M A+ + A QV+E + ++ D H + +I AF++ GL +A+ +
Sbjct: 391 PNLQVVTSLIDMYAKCGNIERAVQVFEMVDQK----DLHCYSTVITAFANHGLSEDAISL 446
Query: 129 YNEMRSSPATPISLPFRVILKGL 151
++EM+ + P + F +L
Sbjct: 447 FSEMQKANIKPDGVAFLGVLTAC 469
>gi|255574497|ref|XP_002528160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532417|gb|EEF34211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 569
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/102 (19%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 47 RQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ 106
+ Q ++ +KL++ +R + +P++ Y ++ AR +A++++E L+ + D
Sbjct: 265 KASQSYMALKLFNEMRSQKC-KPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGHEPDV 323
Query: 107 HTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
+ + ++ A+S +G P A I++ M+ P + +++
Sbjct: 324 YAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMV 365
>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
Length = 616
Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100
+L F +Q + +L+ + + + +P+M Y ++ + +++ + EA++++ +L +
Sbjct: 478 LLDGFCKQGYLAKAFRLFRAM-QSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQ 536
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREK 160
+ + + II GL EA+ + M P + VI++G + + +
Sbjct: 537 GLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRA 596
Query: 161 VK 162
V+
Sbjct: 597 VQ 598
Score = 38.1 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 31/143 (21%), Positives = 69/143 (48%), Gaps = 9/143 (6%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
S++ + Q +V KL+DV+ + +PD+F Y ++ + K++ EAKQ++ ++
Sbjct: 372 SLMNGYSLQAEVVEARKLFDVMITK-GCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIH 430
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPY----P 155
+ + D ++ +I G EA ++ M ++ P + ++L G
Sbjct: 431 QGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAK 490
Query: 156 EFR--EKVKDDFLELFPDMIVYD 176
FR ++ +L+ P+M++Y+
Sbjct: 491 AFRLFRAMQSTYLK--PNMVMYN 511
>gi|85000739|ref|XP_955088.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65303234|emb|CAI75612.1| hypothetical protein, conserved [Theileria annulata]
Length = 559
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 53/106 (50%)
Query: 45 FQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF 104
+ + V M+L++ +++ +P+ Y ++ +NK++ +A +++ ++++ V
Sbjct: 185 YVNNNSVDSAMRLFEDMKERGKVKPNTIMYTTLIKGYGQNKQLDKAMRIFRLMQQDGVEP 244
Query: 105 DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG 150
+ T+ II A + G A + EM SS P + F I+KG
Sbjct: 245 NTVTYNSIIDACARVGEMGSATRLLEEMLSSGIEPDLITFSTIIKG 290
>gi|449500717|ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g02060, chloroplastic-like [Cucumis sativus]
Length = 720
Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 45 FQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWED-LKREEVL 103
FQ +VF MK + V P + + +L +L + + AK+V+++ L V
Sbjct: 165 FQESIKVFTIMKSHGV-------SPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTYGVT 217
Query: 104 FDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
D TF +IR F +G+ + I+N++ P + + ++ GL
Sbjct: 218 PDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGL 265
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 56 KLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
++Y+ ++K +PD+F + ++ M A+ + AKQ+++D++ ++V +++ ++
Sbjct: 131 RIYNHIKKS-GVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDV----YSWNLLLGG 185
Query: 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
+ GL EA ++ +M P F +L
Sbjct: 186 YVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSML 218
>gi|15221081|ref|NP_172636.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75200496|sp|Q9SAA6.1|PPR34_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g11710, mitochondrial; Flags: Precursor
gi|4835786|gb|AAD30252.1|AC007296_13 F25C20.14 [Arabidopsis thaliana]
gi|22655109|gb|AAM98145.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|30725498|gb|AAP37771.1| At1g11710 [Arabidopsis thaliana]
gi|332190652|gb|AEE28773.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 14/141 (9%)
Query: 12 LKRLQSHPVRFDRFIKSHVSR-LLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD 70
L+ + S ++ DRF ++ V R L ++ V EFQRQ + K++ D
Sbjct: 384 LRDMNSKNMQIDRFTQAIVVRGLCRNGYVKEAVEFQRQ-----------ISEKKL--VED 430
Query: 71 MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYN 130
+ + ++ R+KK+ A Q+ + + + D +FG +I + G A+ IY+
Sbjct: 431 IVCHNTLMHHFVRDKKLACADQILGSMLVQGLSLDAISFGTLIDGYLKEGKLERALEIYD 490
Query: 131 EMRSSPATPISLPFRVILKGL 151
M T + + I+ GL
Sbjct: 491 GMIKMNKTSNLVIYNSIVNGL 511
>gi|242052075|ref|XP_002455183.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
gi|241927158|gb|EES00303.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
Length = 892
Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 33/129 (25%), Positives = 62/129 (48%), Gaps = 6/129 (4%)
Query: 22 FDRFIKSHVSRLLKSDLVSVLAE-FQRQDQVFLCMKLYD-VVRKEIWYRPDMFFYRDMLM 79
FD+ I S V + +V+ E + R V +LYD +V + + PD + YR ++
Sbjct: 498 FDKMIDSSV--VPNEVTFNVMIEGYCRVGNVRKAFQLYDQMVDRGL--TPDNYTYRSLIS 553
Query: 80 MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
+L ++AK+ +DL+ V+ + + ++ F G +E I++EMR+
Sbjct: 554 VLCLTLGAMKAKEFVDDLENNCVVLNSFSLTTLMYGFCKEGRLTETYHIWDEMRARGVKL 613
Query: 140 ISLPFRVIL 148
+ F VI+
Sbjct: 614 DLISFTVIV 622
>gi|449475988|ref|XP_004154607.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Cucumis sativus]
Length = 950
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 41/85 (48%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD+F + +L L R + + A V+ + + + D T+G +I + +A+
Sbjct: 160 KPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDALV 219
Query: 128 IYNEMRSSPATPISLPFRVILKGLI 152
+++EM P + + ++L GL
Sbjct: 220 LFDEMTDRGILPNQIIYSIVLSGLC 244
>gi|255547329|ref|XP_002514722.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546326|gb|EEF47828.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 479
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 23/133 (17%)
Query: 56 KLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115
KL +V+R I YR ++ + K V A++V +++KR + D + +R
Sbjct: 190 KLSEVIRPCI--------YRSLIYGWSMQKNVKRAREVIQEMKRNGIKPDLFCYNTFLRC 241
Query: 116 FSD-------SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLEL 168
+ SGL E++ + EMRS P S+ + ++L L +E K LEL
Sbjct: 242 LCERNVERNPSGLVPESLNVMMEMRSYRIEPNSISYNILLSCLGRVRRVQESCK--ILEL 299
Query: 169 F------PDMIVY 175
PD + Y
Sbjct: 300 MKKSSCAPDWVSY 312
>gi|449458524|ref|XP_004146997.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Cucumis sativus]
Length = 481
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVV---EAKQVW 94
L + L R + M ++R+ Y PD+ Y ++ L KV EAK+++
Sbjct: 131 LANCLCNLNRVSEGLAAMT--GILRR--GYIPDIVTYNTLIKGLYGLCKVGHEDEAKEIF 186
Query: 95 EDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
E++K + ++ + ++ ++ F +G E+ ++NEM P + F V++
Sbjct: 187 EEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLI 240
>gi|296090624|emb|CBI41008.3| unnamed protein product [Vitis vinifera]
Length = 379
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/97 (18%), Positives = 43/97 (44%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
+++ PD+ + +L +N + +++W+ +K+ V + ++ +R
Sbjct: 200 EKVGLEPDLITFNTLLNAFYQNGSYADGEKIWDLMKKNNVAPNVRSYNAKLRGVISENRM 259
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
SEA+ + +EM++S P ++KG E
Sbjct: 260 SEAVELIDEMKTSGIKPDVFTLNSLMKGFCNAGNLEE 296
>gi|302806226|ref|XP_002984863.1| hypothetical protein SELMODRAFT_121207 [Selaginella moellendorffii]
gi|300147449|gb|EFJ14113.1| hypothetical protein SELMODRAFT_121207 [Selaginella moellendorffii]
Length = 564
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 53 LCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDI 112
+ +KLY + +E+ Y PD Y ++ +L + +A+QV+E+++R + D FG +
Sbjct: 225 MALKLYSDL-QEVGYAPDRVTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPIFGLM 283
Query: 113 IRAFSDSGLPSEAMFIYNEMRSSPATP 139
+ + +G +A +N M S P
Sbjct: 284 VDMWGKTGNAEKAAQWFNRMLDSGLQP 310
>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
Length = 768
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 8/136 (5%)
Query: 43 AEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEV 102
+F+ D+V + + V+ E +PD FY +L +L K+ + + R +
Sbjct: 143 GKFELYDEV---VGIVKVMEDEYRIKPDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRI 199
Query: 103 LFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
D TF +I+A + A+ + EM S +P F I++G I
Sbjct: 200 RHDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNL----- 254
Query: 163 DDFLELFPDMIVYDPP 178
D L + M+ Y P
Sbjct: 255 DGALRIKEQMVEYGCP 270
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 52/115 (45%), Gaps = 5/115 (4%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRK--EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL 97
S+L F + + K D+V+ PD+ Y ++ L + +V A ++ +
Sbjct: 558 SLLTHFCKTGDI---KKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSI 614
Query: 98 KREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
+ + ++ H + +I+A EAM ++ EM P ++ ++++ +GL
Sbjct: 615 QMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYKIVYRGLC 669
>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
Length = 558
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/123 (20%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Query: 59 DVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118
D++++ I PD+F Y ++ + ++ +AKQ++E + ++ D T+ +I+ F
Sbjct: 279 DMIKRSI--DPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCK 336
Query: 119 SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPP 178
S + ++ EM ++ + +++GL F + D+ ++F M+ P
Sbjct: 337 SKRVEDGTELFREMSHRGLVGDTVTYTTLIQGL-----FHDGDCDNAQKVFKQMVSDGVP 391
Query: 179 EDL 181
D+
Sbjct: 392 PDI 394
>gi|357165438|ref|XP_003580383.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
chloroplastic-like [Brachypodium distachyon]
Length = 612
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 55/114 (48%), Gaps = 10/114 (8%)
Query: 22 FDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMML 81
FD+ + ++ +++S+ + +R + L K+ P+++ Y +L M
Sbjct: 435 FDKCVVAY------GNMISMYGQIRRASDATRLLALM----KQKGCEPNVWVYNSLLDMR 484
Query: 82 ARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135
+ +A+++W+++ R +V D+ ++ II AF+ SG M Y E R +
Sbjct: 485 GKLGDSRQAEKIWKEMVRRKVQPDRISYTAIIGAFNRSGELDRCMNFYQEFRET 538
>gi|224075357|ref|XP_002304600.1| predicted protein [Populus trichocarpa]
gi|222842032|gb|EEE79579.1| predicted protein [Populus trichocarpa]
Length = 641
Score = 38.5 bits (88), Expect = 1.4, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 74 YRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEM- 132
Y ++ L ++ KV EA VW + + D +G +I S++GL +A+ +YNEM
Sbjct: 452 YSVLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNEML 511
Query: 133 -RSSPATPISLPFRVILKGL 151
+ + P + + ++L L
Sbjct: 512 CQEPDSQPDVVTYNILLNAL 531
>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
Length = 484
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 59/116 (50%), Gaps = 3/116 (2%)
Query: 60 VVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119
+VR I P+ + + ++ A+ KV +A V+ ++++ + D T+G +I S
Sbjct: 365 MVRNGI--HPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKS 422
Query: 120 GLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVY 175
G +AM + +M +P ++ + ++ L + ++ +K KD FL+ + + V+
Sbjct: 423 GRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKW-DKAKDYFLKCWIEAFVW 477
>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 603
Score = 38.5 bits (88), Expect = 1.4, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF-SDSGLPSEAMF 127
PD+ Y +L L + K+ EA +V + + E D T+ +I A +DSG+ +AM
Sbjct: 207 PDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGV-GQAMK 265
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFP 170
+ +EMR P + + V++ G+ E +K FL P
Sbjct: 266 LLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIK--FLNNMP 306
>gi|302776386|ref|XP_002971363.1| hypothetical protein SELMODRAFT_451140 [Selaginella moellendorffii]
gi|300161345|gb|EFJ27961.1| hypothetical protein SELMODRAFT_451140 [Selaginella moellendorffii]
Length = 745
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/110 (18%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 39 VSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLK 98
+V+ + R D + +++++ + K + P++ Y ++ +L + K+ + ++++D+
Sbjct: 220 TTVIHWYSRADDIDRAVEMWNQMLK-VGCLPNVVTYTMLMSLLTKLKRFRQVGEIFKDMV 278
Query: 99 REEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
+ T+ +I+ + SG A+ ++ ++ S A+P + FRV++
Sbjct: 279 SAGCRPNVRTYTVLIQCLASSGNLDAALLVFEKLDSLKASPTAATFRVLM 328
>gi|226499896|ref|NP_001150085.1| EMB2745 [Zea mays]
gi|195636584|gb|ACG37760.1| EMB2745 [Zea mays]
gi|414879767|tpg|DAA56898.1| TPA: EMB2745 [Zea mays]
Length = 410
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIY 129
++ Y ++ L R+ K+ +A Q++E ++RE + TF +I + +G + A+ +
Sbjct: 142 NVVSYNILIAGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFF 201
Query: 130 NEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLE-----LFPDMIVY 175
N+M+++ P + + ++ G + V+ FL+ L P + Y
Sbjct: 202 NQMKAAGLPPSVVTYNELICGFCRVRDIARAVR-AFLDMKERGLAPTKVTY 251
>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
Length = 798
Score = 38.5 bits (88), Expect = 1.4, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 51 VFLCM--------KLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEV 102
V+LC K++D + K+ ++PD Y +L A +V+ Q+ + + R
Sbjct: 284 VYLCKNGRSMEARKVFDSMVKK-GHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGT 342
Query: 103 LFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
D + F +I A++ G+ EAM +++MR P + + ++ L
Sbjct: 343 QPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDAL 391
>gi|168012907|ref|XP_001759143.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689842|gb|EDQ76212.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 505
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/177 (19%), Positives = 84/177 (47%), Gaps = 15/177 (8%)
Query: 12 LKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDM 71
L+ L + V + ++S + +D +S+L Q + L ++++ ++++ WY D
Sbjct: 55 LRILNASQVSVVQILESLSPSMKLTDWLSLLEGLANQSKWALTLEVFRWMQRQKWYNHDD 114
Query: 72 FFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF---SDSGLPSE-AMF 127
FY ++++ + + + A ++ ++KR D + +I A+ D G E AM
Sbjct: 115 GFYAKLIVISGKARDLRMAVWLFNEVKRSGSRPDSSLYNALITAYLHSRDKGRGFEAAMK 174
Query: 128 IYNEMRSSP-ATPISLPFRVILKGLIPYPE-------FREKVKDDFLELFPDMIVYD 176
++ +M+ P P + + ++L+ + F+E + +++PD++ Y+
Sbjct: 175 LFEKMKQKPKCQPNLVTYNILLRASAQLGDVVQVDRFFKEM---EAAKIYPDLVTYN 228
>gi|449435037|ref|XP_004135302.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
mitochondrial-like [Cucumis sativus]
Length = 519
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWE-DLKREEVLFDQHTFGDIIRAFSDSGL 121
K Y PD FY ++ L R KV EA V+E ++ + VL + T+ +I +
Sbjct: 338 KSAGYEPDTLFYNCLIHTLGRAGKVREAIHVFEVEMPSKSVLPNTSTYNSMIAMYCRRAR 397
Query: 122 PSEAMFIYNEMRSS 135
+AM + EM+ S
Sbjct: 398 EEKAMKLLEEMQKS 411
>gi|297834132|ref|XP_002884948.1| hypothetical protein ARALYDRAFT_478692 [Arabidopsis lyrata subsp.
lyrata]
gi|297330788|gb|EFH61207.1| hypothetical protein ARALYDRAFT_478692 [Arabidopsis lyrata subsp.
lyrata]
Length = 394
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 64 EIWYR-------PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116
+IW R D+ Y L+ LA KK E ++++LK E+ D TF +I+ F
Sbjct: 233 KIWARMVEKKVKRDIRSYNARLLGLAMEKKSEEMVSLFDELKVNELKPDVFTFTAMIKGF 292
Query: 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
+ G EA+ Y E+ + P+ F +L +
Sbjct: 293 AGEGRLDEAITWYKEIEKNGCRPMKFVFNSLLPAIC 328
>gi|224075802|ref|XP_002304774.1| predicted protein [Populus trichocarpa]
gi|222842206|gb|EEE79753.1| predicted protein [Populus trichocarpa]
Length = 728
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
+E +PD+F Y M+ LA + +VWE++KR+ V D + ++ A G
Sbjct: 292 RENLCKPDVFAYTAMVRALAGEGNLDACLRVWEEMKRDGVEPDVMAYVTLVTALCKGGRV 351
Query: 123 SEAMFIYNEMRS 134
+ ++ EM+
Sbjct: 352 DKGYEVFKEMKG 363
Score = 36.6 bits (83), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 61/129 (47%), Gaps = 10/129 (7%)
Query: 55 MKLYDVVRKEIWY--RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDI 112
+++Y V +K + + +P +F Y ++ L + + A V+ED +R+ ++ + T+ +
Sbjct: 212 LRVYYVYQKMVKFGVKPRVFLYNRIMDSLIKTGHLDLALSVYEDFRRDGLVEESVTYMIL 271
Query: 113 IRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFR------EKVKDDFL 166
I+ +G E M + MR + P + +++ L E++K D +
Sbjct: 272 IKGLCKAGRIEEMMEVLGRMRENLCKPDVFAYTAMVRALAGEGNLDACLRVWEEMKRDGV 331
Query: 167 ELFPDMIVY 175
E PD++ Y
Sbjct: 332 E--PDVMAY 338
>gi|147852347|emb|CAN80116.1| hypothetical protein VITISV_032528 [Vitis vinifera]
Length = 505
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 108 TFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE--KVKDDF 165
++ D+IR+++ P EA+ Y EMRS +P L F ++LK F E K++ D
Sbjct: 86 SWNDLIRSYATRDSPREAIGAYLEMRSLGISPDKLTFPILLKACAXISAFNEGRKIQVDV 145
Query: 166 LELFPDMIVY 175
++ D VY
Sbjct: 146 MKHGLDCNVY 155
>gi|367023062|ref|XP_003660816.1| hypothetical protein MYCTH_2299543 [Myceliophthora thermophila ATCC
42464]
gi|347008083|gb|AEO55571.1| hypothetical protein MYCTH_2299543 [Myceliophthora thermophila ATCC
42464]
Length = 1177
Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 49 DQVFLCMKLY--DVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ 106
D++ L MKL+ V K+ Y P+ Y ++ A+N ++ + Q++E ++ ++
Sbjct: 369 DRLDLAMKLFGTSVTAKKAMYSPET--YHQLISACAQNGRISDMLQLFEHMESSGIVPFA 426
Query: 107 HTFGDIIRAFSDSGLPSEAMFIYNEMRS 134
TF +I AF+++G A+ YNE R+
Sbjct: 427 ATFPAMITAFANTGDLVSAVECYNEYRN 454
>gi|242054767|ref|XP_002456529.1| hypothetical protein SORBIDRAFT_03g037920 [Sorghum bicolor]
gi|241928504|gb|EES01649.1| hypothetical protein SORBIDRAFT_03g037920 [Sorghum bicolor]
Length = 517
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 4/129 (3%)
Query: 24 RFIKSHVSRLLKSDLVS---VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMM 80
RF S + + D+VS +++ F + + MKL++ + E PD Y ++
Sbjct: 262 RFWSSMERKGIDRDVVSYGSMISCFSKAGSLHSVMKLFNHM-NEAGVAPDRKVYNAIVFA 320
Query: 81 LARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPI 140
LA+ + V AK + ++ ++V D TF +I + EAM +++ M +P
Sbjct: 321 LAKGRCVKAAKMLVRTMEEKQVAPDTATFNSLIGPLCKARQVQEAMEMFDAMLERGLSPS 380
Query: 141 SLPFRVILK 149
F +L
Sbjct: 381 VRTFHALLN 389
>gi|225470179|ref|XP_002268211.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g55630-like [Vitis vinifera]
Length = 514
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 54/142 (38%), Gaps = 22/142 (15%)
Query: 50 QVFLCMKLYDVVRKEIW---------YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100
LC+K Y +V W Y PD+ Y ++ R K+ + ++ E+L
Sbjct: 267 HCLLCLKQYKLVE---WVYQQMLLEDYSPDILTYNIVMCTKYRLGKLDQFHRLLEELGTN 323
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE---- 156
D HTF ++ P A+ + N M+ P L F ++ GL
Sbjct: 324 GFSPDFHTFNILLHLLGKGNKPLAALDLLNHMKEVGFDPSVLHFTTLIDGLSRAGNLDAC 383
Query: 157 ---FREKVKDDFLELFPDMIVY 175
F E +K L PD++ Y
Sbjct: 384 KYFFDEMIK---LGCMPDVVCY 402
>gi|449476381|ref|XP_004154721.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Cucumis sativus]
Length = 875
Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 22/115 (19%), Positives = 58/115 (50%), Gaps = 8/115 (6%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+P + + ++ L + A++V++ + + ++ + G ++R + +GL S +
Sbjct: 150 KPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHSHGID 209
Query: 128 IYNEMRSSPATPISLPFRVILKGL------IPYPEFREKVKDDFLELFPDMIVYD 176
+ +EMRSS A P + + ++ L + + EK+++ + L PD++ ++
Sbjct: 210 LLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMRE--VGLSPDIVTFN 262
>gi|356562783|ref|XP_003549648.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Glycine max]
Length = 859
Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 36/85 (42%)
Query: 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123
E+ P + Y + AR EA+ + + + D H+F +I+AF G
Sbjct: 480 EVGSNPTVETYNSFIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIKAFRQGGQYE 539
Query: 124 EAMFIYNEMRSSPATPISLPFRVIL 148
EA+ Y EM + P L V+L
Sbjct: 540 EAVKSYVEMEKANCEPNELTLEVVL 564
>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Brachypodium distachyon]
Length = 810
Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 45/89 (50%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+F Y +++ + K+ EA +++ +K+ V +T+ ++ + G EA+ +
Sbjct: 399 PDVFTYNNLIHWHCQAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKL 458
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEF 157
Y+EM P + + +++G I +F
Sbjct: 459 YSEMPMEGFKPNVVTYITLMRGYIAKKDF 487
>gi|168030898|ref|XP_001767959.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680801|gb|EDQ67234.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 957
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Query: 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL 97
++ A ++R D + ++ Y+ +R+ P YR M++ L + ++ +A +WEDL
Sbjct: 148 MLEAYARWERYDTL---LEFYEAMRQR-GLVPSAHVYRTMIVTLYKAERHSDALMLWEDL 203
Query: 98 KREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEF 157
E++ + + II + G +A+ + +MR++ P L + I+ L +
Sbjct: 204 LVEKLEPNFVLYAIIIHILNKEGRTEDAVHTFKDMRAAGHLPDELLYNTIICALGKLGRY 263
Query: 158 RE 159
+E
Sbjct: 264 QE 265
>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 63/128 (49%), Gaps = 9/128 (7%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
MKLY+ + ++ RPD+ Y +L L + KV +AK+++ +K + D + +G +
Sbjct: 402 MKLYNGML-QVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLN 460
Query: 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYP------EFREKVKDDFLEL 168
+G EAM ++N+++S F ++ GL E EK+ + EL
Sbjct: 461 GLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQE--EL 518
Query: 169 FPDMIVYD 176
PD++ Y+
Sbjct: 519 QPDVVTYN 526
>gi|449468061|ref|XP_004151740.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like, partial [Cucumis sativus]
Length = 147
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVV---EAKQVW 94
L + L R + M ++R+ Y PD+ Y ++ L KV EAK+++
Sbjct: 16 LANCLCNLNRVSEGLAAMT--GILRR--GYIPDIVTYNTLIKGLYGLCKVGHEDEAKEIF 71
Query: 95 EDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
E++K + ++ + ++ ++ F +G E+ ++NEM P + F V++
Sbjct: 72 EEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLI 125
>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 597
Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 63/128 (49%), Gaps = 9/128 (7%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
MKLY+ + ++ RPD+ Y +L L + KV +AK+++ +K + D + +G +
Sbjct: 394 MKLYNGML-QVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLN 452
Query: 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYP------EFREKVKDDFLEL 168
+G EAM ++N+++S F ++ GL E EK+ + EL
Sbjct: 453 GLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQE--EL 510
Query: 169 FPDMIVYD 176
PD++ Y+
Sbjct: 511 QPDVVTYN 518
>gi|15233259|ref|NP_188222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274469|sp|Q9LW84.1|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010
gi|9294448|dbj|BAB02667.1| unnamed protein product [Arabidopsis thaliana]
gi|332642241|gb|AEE75762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 642
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 40/79 (50%)
Query: 74 YRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133
Y ++ L + K+ A +++++LK + +I+ F G SEA+ ++NEM+
Sbjct: 447 YCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMK 506
Query: 134 SSPATPISLPFRVILKGLI 152
+ + P + ++ G++
Sbjct: 507 NQGSGPDVYAYNALMSGMV 525
>gi|297793693|ref|XP_002864731.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310566|gb|EFH40990.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 732
Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 41/82 (50%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+F Y ++ L +++ EA ++++ +K E + T+ +I F +A+ +
Sbjct: 406 PDVFTYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYNIEKALDL 465
Query: 129 YNEMRSSPATPISLPFRVILKG 150
+EM SS P + F ++ G
Sbjct: 466 CSEMTSSGVEPNIITFSTLIDG 487
>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
Length = 862
Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P+ + + +L A+ + EA ++ + + + D T+G +I A G +A+
Sbjct: 442 PNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLK 501
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELF-----PDMIVYD 176
+N+M + TP S+ F ++ GL + EK ++ F E++ P+++ ++
Sbjct: 502 FNQMINDGVTPNSVVFNSLVYGLCTVDRW-EKAEELFFEMWDQGVRPNVVFFN 553
Score = 36.6 bits (83), Expect = 5.1, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 60/134 (44%), Gaps = 6/134 (4%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
+++ + QV + +L D + + + RP++ Y ++ + EA Q+ + +
Sbjct: 554 TIMCNLCNEGQVMVAQRLIDSMER-VGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVS 612
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
+ D ++ ++R + +G A ++ EM TP ++ + IL+GL F E
Sbjct: 613 VGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSE 672
Query: 160 KVKDDFLELFPDMI 173
EL+ +MI
Sbjct: 673 AK-----ELYLNMI 681
>gi|449449910|ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Cucumis sativus]
Length = 757
Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 45 FQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWED-LKREEVL 103
FQ +VF MK + V P + + +L +L + + AK+V+++ L V
Sbjct: 165 FQESIKVFTIMKSHGV-------SPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTYGVT 217
Query: 104 FDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
D TF +IR F +G+ + I+N++ P + + ++ GL
Sbjct: 218 PDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGL 265
>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
Length = 425
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 64/138 (46%), Gaps = 11/138 (7%)
Query: 36 SDLVSVLAEFQR-QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVW 94
S L+S L + R D L L D++ ++I PD+F + ++ + K+VEA++++
Sbjct: 90 SSLISCLCNYGRWSDASRL---LSDMIERKI--NPDVFTFSALIDAFVKEGKLVEAEKLY 144
Query: 95 EDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPY 154
+++ + + T+ +I F EA ++ M S P + + ++KG Y
Sbjct: 145 DEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKY 204
Query: 155 PEFREKVKDDFLELFPDM 172
E +E+F +M
Sbjct: 205 KRVEEG-----MEVFREM 217
Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
RP++ Y ++ L + +A ++ D+ ++ D TF +I AF G EA
Sbjct: 83 RPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEK 142
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFRE-KVKDDFL---ELFPDMIVYDP 177
+Y+EM P + + ++ G + E K +F+ FPD++ Y+
Sbjct: 143 LYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNT 196
Score = 36.6 bits (83), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 40/84 (47%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+ Y ++ + K+V E +V+ ++ + ++ + T+ +I+ +G A I
Sbjct: 189 PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEI 248
Query: 129 YNEMRSSPATPISLPFRVILKGLI 152
+ EM S P + + +L GL
Sbjct: 249 FKEMVSDGVPPNIMTYNTLLDGLC 272
>gi|297797201|ref|XP_002866485.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312320|gb|EFH42744.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 983
Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
V +E+ RP + Y ++ L + +VVEA++ + + + D+ + +I A++ +G
Sbjct: 573 VMEELGLRPTVAIYSSIIGSLGKQGRVVEAEETFAKMLESGIQPDEIAYMIMINAYARNG 632
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK--DDFLE--LFPDMIVY 175
EA + E+ P S + V++ G + + + D LE L P+ ++Y
Sbjct: 633 RIDEANELVEEVVKHFVRPSSFTYTVLISGFVKMGMMEKGCQYLDKMLEDGLSPNAVLY 691
>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1043
Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
++L+ + +++ +++++ + +E PD F Y M+ L ++ +V EA ++ + +K
Sbjct: 673 TLLSSLVKDEKIDFALQIFNEL-QESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKN 731
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
+ +L D T+ ++ SG EA ++ +M P
Sbjct: 732 QNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEP 771
>gi|302143887|emb|CBI22748.3| unnamed protein product [Vitis vinifera]
Length = 518
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 54/142 (38%), Gaps = 22/142 (15%)
Query: 50 QVFLCMKLYDVVRKEIW---------YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100
LC+K Y +V W Y PD+ Y ++ R K+ + ++ E+L
Sbjct: 271 HCLLCLKQYKLVE---WVYQQMLLEDYSPDILTYNIVMCTKYRLGKLDQFHRLLEELGTN 327
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE---- 156
D HTF ++ P A+ + N M+ P L F ++ GL
Sbjct: 328 GFSPDFHTFNILLHLLGKGNKPLAALDLLNHMKEVGFDPSVLHFTTLIDGLSRAGNLDAC 387
Query: 157 ---FREKVKDDFLELFPDMIVY 175
F E +K L PD++ Y
Sbjct: 388 KYFFDEMIK---LGCMPDVVCY 406
>gi|449494995|ref|XP_004159705.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
mitochondrial-like [Cucumis sativus]
Length = 488
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWE-DLKREEVLFDQHTFGDIIRAFSDSGL 121
K Y PD FY ++ L R KV EA V+E ++ + VL + T+ +I +
Sbjct: 307 KSAGYEPDTLFYNCLIHTLGRAGKVREAIHVFEVEMPSKSVLPNTSTYNSMIAMYCRRAR 366
Query: 122 PSEAMFIYNEMRSS 135
+AM + EM+ S
Sbjct: 367 EEKAMKLLEEMQKS 380
>gi|356540361|ref|XP_003538658.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Glycine max]
Length = 523
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIY 129
D+ Y ++L L + V EAK ++ D+ + V D T+ I ++ D+ A+ +
Sbjct: 250 DLLAYNNLLQALCKGGCVDEAKTIFHDMLSKRVEPDAFTYSIFIHSYCDADDVQSALRVL 309
Query: 130 NEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLEL 168
++MR P + I+K L E V++ +L L
Sbjct: 310 DKMRRYNILPNVFTYNCIIKRLCK----NEHVEEAYLLL 344
>gi|359496212|ref|XP_003635178.1| PREDICTED: pentatricopeptide repeat-containing protein At1g55890,
mitochondrial-like [Vitis vinifera]
Length = 379
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 4/122 (3%)
Query: 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL 97
LV+ E D + + D + K + PD+ + +L +N + +++W+ +
Sbjct: 169 LVNAFCEMGSLDSA---LSVLDEMEK-VGLEPDLITFNTLLNAFYQNGSYADGEKIWDLM 224
Query: 98 KREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEF 157
K+ V + ++ +R SEA+ + +EM++S P ++KG
Sbjct: 225 KKNNVAPNVRSYNAKLRGVISENRMSEAVELIDEMKTSGIKPDVFTLNSLMKGFCNAGNL 284
Query: 158 RE 159
E
Sbjct: 285 EE 286
>gi|357121428|ref|XP_003562422.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial-like [Brachypodium distachyon]
Length = 663
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++ Y ML L + A+ ++ + ++EV D TF +I EA+ +
Sbjct: 541 PNVNLYNIMLHHLCKVGHFKRAQTIFSHMIQKEVSPDTVTFNTLIYWLGKRSRAIEALNL 600
Query: 129 YNEMRSSPATPISLPFRVILKGLI 152
+ +MR+ P +L F+ ++ GL+
Sbjct: 601 FKDMRTRGVEPDTLTFKYLISGLL 624
>gi|147812173|emb|CAN61517.1| hypothetical protein VITISV_033966 [Vitis vinifera]
Length = 635
Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 39/84 (46%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
++P + Y +L L K + ++ + D F +I AFS+SG EAM
Sbjct: 103 HKPSLVTYTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAM 162
Query: 127 FIYNEMRSSPATPISLPFRVILKG 150
+ +M+ S + P + F ++KG
Sbjct: 163 KYFWKMKESGSKPTTSTFNTLIKG 186
>gi|302808451|ref|XP_002985920.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
gi|300146427|gb|EFJ13097.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
Length = 574
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 53 LCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDI 112
+ +KLY + +E+ Y PD Y ++ +L + +A+QV+E+++R + D FG +
Sbjct: 225 MALKLYSDL-QEVGYAPDRVTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPIFGLM 283
Query: 113 IRAFSDSGLPSEAMFIYNEMRSSPATP 139
+ + +G +A +N M S P
Sbjct: 284 VDMWGKTGNAEKAAQWFNRMLDSGLQP 310
>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 873
Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 41/187 (21%), Positives = 84/187 (44%), Gaps = 17/187 (9%)
Query: 15 LQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFY 74
L +H +R D I K L + LA + Q L ++++ + K + +RP++
Sbjct: 125 LHAHLLRSDHTIP-------KPLLDTSLAAYVISKQPHLGHQIFNKM-KRLRFRPNLLTC 176
Query: 75 RDMLMMLARNKK---VVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNE 131
+L L R+ +V +++V++D + V + +TF +I + EA+ + N+
Sbjct: 177 NTLLNALVRSNSSHSLVFSREVFQDAVKLGVQPNVNTFNILIHGYCSDNNTEEALRLINQ 236
Query: 132 MRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLE-----LFPDMIVYDPPEDLFEDQE 186
M P ++ + +L L + + V+D L+ LFP+ Y+ + +
Sbjct: 237 MGEYGCCPDNVTYNTVLTALCKRSQLTQ-VRDLLLQMKNSGLFPNRNTYNILVHGYCKLK 295
Query: 187 WRRESDE 193
W +E+ E
Sbjct: 296 WLKEAAE 302
>gi|297830178|ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328811|gb|EFH59230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 642
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 40/79 (50%)
Query: 74 YRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133
Y ++ L + K+ A +++++LK + +I+ F G SEA+ ++NEM+
Sbjct: 447 YCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMK 506
Query: 134 SSPATPISLPFRVILKGLI 152
+ + P + ++ G++
Sbjct: 507 NQGSGPDVYAYNALMSGMV 525
>gi|449454285|ref|XP_004144886.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Cucumis sativus]
gi|449472527|ref|XP_004153621.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Cucumis sativus]
Length = 875
Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 22/115 (19%), Positives = 58/115 (50%), Gaps = 8/115 (6%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+P + + ++ L + A++V++ + + ++ + G ++R + +GL S +
Sbjct: 150 KPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHSHGID 209
Query: 128 IYNEMRSSPATPISLPFRVILKGL------IPYPEFREKVKDDFLELFPDMIVYD 176
+ +EMRSS A P + + ++ L + + EK+++ + L PD++ ++
Sbjct: 210 LLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMRE--VGLSPDIVTFN 262
>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/123 (20%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Query: 59 DVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118
D++++ I PD+F Y ++ + ++ +AKQ++E + ++ D T+ +I+ F
Sbjct: 280 DMIKRSI--DPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCK 337
Query: 119 SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPP 178
S + ++ EM ++ + +++GL F + D+ ++F M+ P
Sbjct: 338 SKRVEDGTELFREMSHRGLVGDTVTYTTLIQGL-----FHDGDCDNAQKVFKQMVSDGVP 392
Query: 179 EDL 181
D+
Sbjct: 393 PDI 395
>gi|296081889|emb|CBI20894.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 39/84 (46%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
++P + Y +L L K + ++ + D F +I AFS+SG EAM
Sbjct: 103 HKPSLVTYTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAM 162
Query: 127 FIYNEMRSSPATPISLPFRVILKG 150
+ +M+ S + P + F ++KG
Sbjct: 163 KYFWKMKESGSKPTTSTFNTLIKG 186
>gi|225430029|ref|XP_002281569.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g25630-like [Vitis vinifera]
Length = 635
Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 39/84 (46%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
++P + Y +L L K + ++ + D F +I AFS+SG EAM
Sbjct: 103 HKPSLVTYTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAM 162
Query: 127 FIYNEMRSSPATPISLPFRVILKG 150
+ +M+ S + P + F ++KG
Sbjct: 163 KYFWKMKESGSKPTTSTFNTLIKG 186
>gi|147767652|emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]
Length = 1563
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Query: 74 YRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133
Y +M+ + + ++ A Q+ + +K V TF ++R + +GL +EA+ +N M
Sbjct: 1181 YMEMIDLAGKVRQFDLAWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVHAFNRME 1240
Query: 134 SSPATPISLPFRVILKGL------IPYPEFREKVKDDFLELFPDMIVY 175
P + F V++ L I F + +KD F PD++VY
Sbjct: 1241 DYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFE---PDVVVY 1285
>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 630
Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 41/83 (49%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+ Y ++ L + +V A ++ ++ + ++ H + +I+A EAM +
Sbjct: 452 PDIVTYGTLIGGLCKAGRVEVASRLLRSIQLKGMVLTPHAYNPVIQALFKRKRTKEAMRL 511
Query: 129 YNEMRSSPATPISLPFRVILKGL 151
+ EM TP + ++++ +GL
Sbjct: 512 FREMEEKGNTPDAFTYKIVFRGL 534
>gi|359496222|ref|XP_002263756.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g13150-like [Vitis vinifera]
Length = 379
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/96 (18%), Positives = 42/96 (43%)
Query: 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123
++ PD+ + +L +N + +++W+ +K+ V + ++ +R S
Sbjct: 191 KVGLEPDLITFNTLLNAFYQNGSYADGEKIWDLMKKNNVAPNVRSYNAKLRGVISENRMS 250
Query: 124 EAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
EA+ + +EM++S P ++KG E
Sbjct: 251 EAVELIDEMKTSGIKPDVFTLNSLMKGFCNAGNLEE 286
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.140 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,059,831,630
Number of Sequences: 23463169
Number of extensions: 124859965
Number of successful extensions: 475544
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 507
Number of HSP's that attempted gapping in prelim test: 470835
Number of HSP's gapped (non-prelim): 5088
length of query: 194
length of database: 8,064,228,071
effective HSP length: 135
effective length of query: 59
effective length of database: 9,191,667,552
effective search space: 542308385568
effective search space used: 542308385568
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 72 (32.3 bits)