BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029406
(194 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1PFH7|PPR89_ARATH Pentatricopeptide repeat-containing protein At1g62350
OS=Arabidopsis thaliana GN=At1g62350 PE=2 SV=1
Length = 196
Score = 312 bits (799), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 155/196 (79%), Positives = 171/196 (87%), Gaps = 2/196 (1%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
MSKE L+ AKELKRLQ+ VR DRFI SHVSRLLKSDLVSVLAEFQRQ+QVFLCMKLY+V
Sbjct: 1 MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
VR+EIWYRPDMFFYRDMLMMLARNKKV E K+VWEDLK+EEVLFDQHTFGD++R F D+
Sbjct: 61 VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
LP EAM +Y EMR SP P+SLPFRVILKGL+PYPE REKVKDDFLELFP MIVYDPPED
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180
Query: 181 LFE--DQEWRRESDEE 194
+ E D+E R +SD E
Sbjct: 181 ICEDSDEEARTDSDLE 196
>sp|Q9STF9|PP266_ARATH Pentatricopeptide repeat-containing protein At3g46870
OS=Arabidopsis thaliana GN=At3g46870 PE=2 SV=1
Length = 257
Score = 182 bits (462), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 84/182 (46%), Positives = 131/182 (71%)
Query: 1 MSKESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+ KE+L V LKRL+ + D+FIK+HV RLLK D+++V+ E +RQ++ L +K+++V
Sbjct: 73 IGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEETALAIKMFEV 132
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
++K+ WY+PD+F Y+D+++ LA++K++ EA +WE +K+E + D T+ ++IR F G
Sbjct: 133 IQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYTEVIRGFLRDG 192
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180
P++AM +Y +M SP P LPFRV+LKGL+P+P R KVK DF ELFP+ YDPPE+
Sbjct: 193 CPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELFPEKHAYDPPEE 252
Query: 181 LF 182
+F
Sbjct: 253 IF 254
>sp|Q9SAD9|PPR40_ARATH Pentatricopeptide repeat-containing protein At1g13040,
mitochondrial OS=Arabidopsis thaliana GN=At1g13040 PE=2
SV=1
Length = 517
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 39 VSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLK 98
S++ F R+ + KL D + E+ PD FY +L L ++ V +A V+ D+
Sbjct: 364 TSLIKAFLREGNSSVAKKLLDQM-TELGLSPDRIFYTTILDHLCKSGNVDKAYGVFNDMI 422
Query: 99 REEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
E+ D ++ +I SG +EA+ ++ +M+ P L F+ I+ GLI
Sbjct: 423 EHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLI 476
Score = 37.7 bits (86), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 59 DVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118
D++ EI PD Y ++ L R+ +V EA +++ED+K +E D+ TF II
Sbjct: 420 DMIEHEI--TPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLIR 477
Query: 119 SGLPSEAMFIYNEM 132
S A ++++M
Sbjct: 478 GKKLSAAYKVWDQM 491
>sp|Q3E9F0|PP392_ARATH Pentatricopeptide repeat-containing protein At5g18475
OS=Arabidopsis thaliana GN=At5g18475 PE=2 SV=1
Length = 506
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100
++ F R +V K+ D ++K P+++ Y ++ + K+ EAKQ ++++K+
Sbjct: 274 MINGFCRAGEVERAKKILDFMKKN-GCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKT 332
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+ D + ++ F +G EAM + EM++S +L + VIL+GL
Sbjct: 333 GLKLDTVGYTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGL 383
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 42/100 (42%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
K+ + D Y ++ RN + EA ++ ++K D T+ I+R S G
Sbjct: 330 KKTGLKLDTVGYTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGLSSEGRS 389
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
EA+ + ++ S +R+IL L E + VK
Sbjct: 390 EEALQMLDQWGSEGVHLNKGSYRIILNALCCNGELEKAVK 429
>sp|Q9FKC3|PP424_ARATH Pentatricopeptide repeat-containing protein At5g48730,
chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2
SV=2
Length = 508
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/134 (20%), Positives = 73/134 (54%), Gaps = 7/134 (5%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
+++++++R+++WY+P++ Y +++ML + K+ +A ++++++ E + + + ++
Sbjct: 134 IQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVS 193
Query: 115 AFSDSGLPSEAMFIYNEMRSS-PATPISLPFRVILKGLIPYPEFREKVKDDFLEL----- 168
A+S SG A + M+SS P + +++K + F +KV+D ++
Sbjct: 194 AYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAF-DKVQDLLSDMRRQGI 252
Query: 169 FPDMIVYDPPEDLF 182
P+ I Y+ D +
Sbjct: 253 RPNTITYNTLIDAY 266
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 24 RFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRK--EIWYRPDMFFYRDMLMML 81
R++ + R+ + L+S+ + R ++ D++R+ + + D+ Y +L
Sbjct: 436 RYLGIALDRVSYNTLLSIYTKVGRSEEAL------DILREMASVGIKKDVVTYNALLGGY 489
Query: 82 ARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135
+ K E K+V+ ++KRE VL + T+ +I +S GL EAM I+ E +S+
Sbjct: 490 GKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSA 543
Score = 31.6 bits (70), Expect = 3.3, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 34/72 (47%)
Query: 77 MLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSP 136
M+ L R KV AK+++E + F +I A+ SGL EA+ ++N M+
Sbjct: 239 MISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYG 298
Query: 137 ATPISLPFRVIL 148
P + + ++
Sbjct: 299 LRPNLVTYNAVI 310
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 46.6 bits (109), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 46/82 (56%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD YR +LM + VVE ++V+ D++ +V+ D F ++ F+ SG +A+
Sbjct: 338 PDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMY 397
Query: 129 YNEMRSSPATPISLPFRVILKG 150
+N ++ + P ++ + ++++G
Sbjct: 398 FNSVKEAGLIPDNVIYTILIQG 419
Score = 38.1 bits (87), Expect = 0.040, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 42/88 (47%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
KE R D+ Y +L + + AK++W D+ +E+L ++ ++ A G
Sbjct: 507 KEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHL 566
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKG 150
+EA +++EM S P + ++KG
Sbjct: 567 AEAFRVWDEMISKNIKPTVMICNSMIKG 594
Score = 32.7 bits (73), Expect = 1.5, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 33/71 (46%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+F Y +L R ++ EA+ V + V D+ T+ +I F +EA I
Sbjct: 655 PDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRI 714
Query: 129 YNEMRSSPATP 139
++EM +P
Sbjct: 715 HDEMLQRGFSP 725
>sp|Q9LK58|PP225_ARATH Pentatricopeptide repeat-containing protein At3g13150
OS=Arabidopsis thaliana GN=At3g13150 PE=2 SV=1
Length = 551
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 60/115 (52%), Gaps = 4/115 (3%)
Query: 37 DLVS---VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQV 93
DL+S +L EF R++ +++D+++ + P++ Y + L RNKK +A +
Sbjct: 227 DLISFNTLLEEFYRRELFVEGDRIWDLMKSKNL-SPNIRSYNSRVRGLTRNKKFTDALNL 285
Query: 94 WEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
+ +K E + D HT+ +I A+ E M YNEM+ TP ++ + +++
Sbjct: 286 IDVMKTEGISPDVHTYNALITAYRVDNNLEEVMKCYNEMKEKGLTPDTVTYCMLI 340
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/138 (20%), Positives = 63/138 (45%), Gaps = 1/138 (0%)
Query: 22 FDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMML 81
FD + + R +KS ++L+ + ++ MK + + +++ PD+ Y M+ L
Sbjct: 145 FDEMPELNCERTVKS-FNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKAL 203
Query: 82 ARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPIS 141
R + + ++E+L++ D +F ++ F L E I++ M+S +P
Sbjct: 204 CRKGSMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPNI 263
Query: 142 LPFRVILKGLIPYPEFRE 159
+ ++GL +F +
Sbjct: 264 RSYNSRVRGLTRNKKFTD 281
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 68/151 (45%), Gaps = 19/151 (12%)
Query: 3 KESLMVAKELKRLQSHP--VRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDV 60
+ ++ + +E++ P F+ FIK + +R ++++ + D++ +C
Sbjct: 401 ESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIF------DEINVC------ 448
Query: 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120
PD+ + +L + +N E V++++KR + ++ TF +I A+S G
Sbjct: 449 -----GLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCG 503
Query: 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+AM +Y M + TP + +L L
Sbjct: 504 SFEQAMTVYRRMLDAGVTPDLSTYNTVLAAL 534
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 5/114 (4%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD + Y ++ R EA QV+E++K +D+ T+ ++ + S P EAM +
Sbjct: 277 PDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKV 336
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPEDLF 182
NEM + +P + + ++ R+ + D+ +EL M D+F
Sbjct: 337 LNEMVLNGFSPSIVTYNSLISAYA-----RDGMLDEAMELKNQMAEKGTKPDVF 385
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Query: 77 MLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSP 136
++ ML + +V A ++ L+ + D +++ +I AF++SG EA+ ++ +M
Sbjct: 179 IISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDG 238
Query: 137 ATPISLPFRVILK--GLIPYP-----EFREKVKDDFLELFPDMIVYD 176
P + + VIL G + P EK+K D + PD Y+
Sbjct: 239 CKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIA--PDAYTYN 283
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
S+++ + R + M+L + + E +PD+F Y +L R KV A ++E+++
Sbjct: 354 SLISAYARDGMLDEAMELKNQM-AEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRN 412
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
+ TF I+ + + G +E M I++E+ +P + + +L
Sbjct: 413 AGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLL 461
Score = 34.7 bits (78), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/108 (18%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Query: 43 AEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEV 102
A+F + +++ L +++ K I +PD+ Y ++ RN ++ +A +++ +++ +
Sbjct: 678 ADFGKSEEI-----LREILAKGI--KPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGI 730
Query: 103 LFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG 150
+ D T+ I +++ + EA+ + M P + I+ G
Sbjct: 731 VPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDG 778
Score = 33.9 bits (76), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/126 (19%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
Query: 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWE 95
+ L S+++ + R+ V + D + KE + P M Y ++ M +R+ +++++
Sbjct: 630 TTLNSMVSIYGRRQMVAKANGVLDYM-KERGFTPSMATYNSLMYMHSRSADFGKSEEILR 688
Query: 96 DLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYP 155
++ + + D ++ +I A+ + +A I++EMR+S P + + +
Sbjct: 689 EILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADS 748
Query: 156 EFREKV 161
F E +
Sbjct: 749 MFEEAI 754
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 58/108 (53%), Gaps = 8/108 (7%)
Query: 66 WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEA 125
++ D+F Y +L LA+++K A QV+ED+K+ D++T+ +IR G EA
Sbjct: 233 GHKLDIFAYNMLLDALAKDEK---ACQVFEDMKKRHCRRDEYTYTIMIRTMGRIGKCDEA 289
Query: 126 MFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
+ ++NEM + T + + +++ L + K+ D +++F M+
Sbjct: 290 VGLFNEMITEGLTLNVVGYNTLMQVLA-----KGKMVDKAIQVFSRMV 332
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 6/128 (4%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+F Y ++ R +V EA ++E+L+R + D ++ +I +G EA
Sbjct: 475 PDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVR 534
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELF-----PDMIVYDPPEDLFE 183
+ EM+ P + + +++ E E F E+ P+++ Y+ D E
Sbjct: 535 FKEMQEKGLNPDVVTYSTLME-CFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLE 593
Query: 184 DQEWRRES 191
E+
Sbjct: 594 KNGRTAEA 601
>sp|Q9SV96|PP358_ARATH Pentatricopeptide repeat-containing protein At4g39620,
chloroplastic OS=Arabidopsis thaliana GN=EMB2453 PE=2
SV=1
Length = 563
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 12/131 (9%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+P++ Y +L A++ KV + +++DL V D +TF ++ A+ +G+ E
Sbjct: 205 QPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEA 264
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLEL-----------FPDMIVYD 176
+ MRS+ P + F V++ EF EK++ F L F MI+
Sbjct: 265 VLTRMRSNECKPDIITFNVLIDSYGKKQEF-EKMEQTFKSLMRSKEKPTLPTFNSMIINY 323
Query: 177 PPEDLFEDQEW 187
+ + EW
Sbjct: 324 GKARMIDKAEW 334
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/72 (19%), Positives = 35/72 (48%)
Query: 44 EFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVL 103
E + D+ C++++ ++K+ WY PD Y ++ ++ + + A ++ ++K
Sbjct: 106 ELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCR 165
Query: 104 FDQHTFGDIIRA 115
D + +I A
Sbjct: 166 PDASVYNALITA 177
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 56 KLYDVVRKEIW--YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113
K + V+R+ I + PD Y +L L K+ A ++E++KR ++ D +T+ ++
Sbjct: 466 KAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMV 525
Query: 114 RAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
+F +GL +A +NEMR TP + + ++
Sbjct: 526 DSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALI 560
>sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360,
mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2
SV=2
Length = 517
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 6/116 (5%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+P F Y ++ ++ EA + +++R + D F +I AF +
Sbjct: 304 KPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYR 363
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI-VYDPPEDLF 182
+ EM+S TP S +IL+ LI E KD+ ++F MI V +P D +
Sbjct: 364 VLKEMKSKGVTPNSKSCNIILRHLIERGE-----KDEAFDVFRKMIKVCEPDADTY 414
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 4/124 (3%)
Query: 58 YDVVRKEI-WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116
+DV RK I PD Y ++ M K++ A +VW+ ++++ V HTF +I
Sbjct: 397 FDVFRKMIKVCEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGL 456
Query: 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176
+ +A + EM P + F + + LI E RE V FL +++V +
Sbjct: 457 CEERTTQKACVLLEEMIEMGIRPSGVTFGRLRQLLI--KEEREDVL-KFLNEKMNVLVNE 513
Query: 177 PPED 180
P D
Sbjct: 514 PLCD 517
>sp|Q9FLJ6|PP439_ARATH Pentatricopeptide repeat-containing protein At5g61370,
mitochondrial OS=Arabidopsis thaliana GN=At5g61370 PE=2
SV=1
Length = 487
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD---- 118
K++ ++ YR +L + + V EA++V +D+K + D F ++ +
Sbjct: 200 KDVISGNELSVYRSLLFGWSVQRNVKEARRVIQDMKSAGITPDLFCFNSLLTCLCERNVN 259
Query: 119 ---SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
SGL EA+ I EMRS P S+ + ++L L RE +
Sbjct: 260 RNPSGLVPEALNIMLEMRSYKIQPTSMSYNILLSCLGRTRRVRESCQ 306
>sp|O04590|PPR88_ARATH Pentatricopeptide repeat-containing protein At1g62260,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E10 PE=2
SV=1
Length = 656
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 73/139 (52%), Gaps = 11/139 (7%)
Query: 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL 97
L S+L+ + L M+++ +V K + PD+ + ++ M +R +++E++++++++
Sbjct: 412 LTSLLSASTGLVNLRLGMQMHQIVVKTV--IPDVPVHNALITMYSRCGEIMESRRIFDEM 469
Query: 98 K-REEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156
K + EV+ T+ +I ++ G SEA+ ++ M+S+ P + F +L +
Sbjct: 470 KLKREVI----TWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLNAC-AHAG 524
Query: 157 FREKVKDDFLELFPDMIVY 175
++ K F+ + M VY
Sbjct: 525 LVDEAKAQFVSM---MSVY 540
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 24 RFIKSHVSRLLKSDLVSVLA---EFQRQDQVFLCMKLYD-VVRKEIWYRPDMFFYRDMLM 79
R + + R + ++V+ A F ++ ++ KLYD ++++ I PD+F Y ++
Sbjct: 312 RLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI--DPDIFTYSSLIN 369
Query: 80 MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
+ ++ EAK ++E + ++ + T+ +I+ F + E M ++ EM
Sbjct: 370 GFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVG 429
Query: 140 ISLPFRVILKGLIPYPE-------FREKVKDDFLELFPDMIVY 175
++ + ++ G E F++ V D L PD++ Y
Sbjct: 430 NTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVL---PDIMTY 469
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 8/115 (6%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
RP++ Y ++ L + +A ++ D+ ++ + TF +I AF G EA
Sbjct: 288 RPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEK 347
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLEL------FPDMIVYD 176
+Y+EM P + ++ G + E EL FP+++ Y+
Sbjct: 348 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE--AKHMFELMISKDCFPNVVTYN 400
Score = 32.7 bits (73), Expect = 1.6, Method: Composition-based stats.
Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Query: 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123
E+ Y+PD F + ++ L R+ + EA + + + + D T+G ++ G
Sbjct: 179 EMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDID 238
Query: 124 EAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
A+ + +M P + + I+ L Y K +D L LF +M
Sbjct: 239 LALSLLKKMEQGKIEPGVVIYNTIIDALCNY-----KNVNDALNLFTEM 282
Score = 32.3 bits (72), Expect = 1.9, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+P++ Y M+ R EA ++ ++K E L D T+ +IRA G + +
Sbjct: 533 KPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAE 592
Query: 128 IYNEMRS 134
+ EMRS
Sbjct: 593 LIREMRS 599
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 62/131 (47%), Gaps = 3/131 (2%)
Query: 24 RFIKSHVSRLLKSDLV---SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMM 80
R + + + + DLV +++ F ++ ++ KLYD + K PD+ Y ++
Sbjct: 306 RLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKG 365
Query: 81 LARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPI 140
+ K+V E +V+ ++ + ++ + T+ +I F + A ++ +M S P
Sbjct: 366 FCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPD 425
Query: 141 SLPFRVILKGL 151
+ + ++L GL
Sbjct: 426 IMTYNILLDGL 436
Score = 40.8 bits (94), Expect = 0.006, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 14/123 (11%)
Query: 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123
E+ Y+PD + ++ L ++ K EA + E + + D T+G +I G P
Sbjct: 173 EMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPD 232
Query: 124 EAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELF---------PDMIV 174
A+ + N+M + + I+ GL Y K DD +LF PD+
Sbjct: 233 LALNLLNKMEKGKIEADVVIYNTIIDGLCKY-----KHMDDAFDLFNKMETKGIKPDVFT 287
Query: 175 YDP 177
Y+P
Sbjct: 288 YNP 290
Score = 38.9 bits (89), Expect = 0.019, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 6/106 (5%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+PD+F Y ++ L + +A ++ D+ + + D F +I AF G EA
Sbjct: 282 KPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEK 341
Query: 128 IYNEM-RSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
+Y+EM +S P + + ++KG Y E +E+F +M
Sbjct: 342 LYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEG-----MEVFREM 382
>sp|Q8GWE0|PP314_ARATH Pentatricopeptide repeat-containing protein At4g16390,
chloroplastic OS=Arabidopsis thaliana GN=P67 PE=1 SV=3
Length = 702
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 54 CMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113
C+ +Y+ + K + +P++ Y ++ + R K+ +AK +++DL + T+ ++
Sbjct: 299 CLNIYEEM-KALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALV 357
Query: 114 RAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
RA+ + +A+ IY EM+ L VIL + + D+ E+F DM
Sbjct: 358 RAYGRARYGDDALAIYREMKEK-----GLSLTVILYNTLLSMCADNRYVDEAFEIFQDM 411
Score = 35.8 bits (81), Expect = 0.21, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 71 MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF-DQHTFGDIIRAFSDSGLPSEAMFIY 129
+ Y +L M A N+ V EA ++++D+K E D TF +I ++ SG SEA
Sbjct: 385 VILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVSEAEAAL 444
Query: 130 NEMRSSPATP 139
+MR + P
Sbjct: 445 LQMREAGFEP 454
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic
OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD++ Y +++ L V EA +++ +++R + + TF +IR +S SG P A +
Sbjct: 1030 PDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAV 1089
Query: 129 YNEMRSSPATP 139
Y M + +P
Sbjct: 1090 YQTMVTGGFSP 1100
Score = 40.4 bits (93), Expect = 0.007, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
++PD Y +L + N+ + KQ W +++++ + D TF ++ A +G EA
Sbjct: 324 HKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAF 383
Query: 127 FIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
+ MR P + ++ GL+ R DD LELF +M
Sbjct: 384 DTLDVMRDQGILPNLHTYNTLICGLL-----RVHRLDDALELFGNM 424
Score = 37.0 bits (84), Expect = 0.089, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 68/151 (45%), Gaps = 5/151 (3%)
Query: 23 DRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLA 82
+R + + + R S LV ++ + + V L++ K++ +P + Y ++ L
Sbjct: 737 ERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLL 796
Query: 83 RNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISL 142
+ A+ V+ +K + D T+ ++ A+ SG E +Y EM + ++
Sbjct: 797 EADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTI 856
Query: 143 PFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
+++ GL+ + DD L+L+ D++
Sbjct: 857 THNIVISGLV-----KAGNVDDALDLYYDLM 882
Score = 30.8 bits (68), Expect = 6.2, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 41/91 (45%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+ Y ++ L +K+ AK+V+E +K D+ T+ ++ FSD+
Sbjct: 291 PDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQF 350
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
++EM P + F +++ L F E
Sbjct: 351 WSEMEKDGHVPDVVTFTILVDALCKAGNFGE 381
Score = 30.4 bits (67), Expect = 7.3, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
RPD+ Y ++ L +V E +++LK + D + II S EA+
Sbjct: 958 RPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALV 1017
Query: 128 IYNEMRSS 135
++NEM++S
Sbjct: 1018 LFNEMKTS 1025
>sp|Q8GYM2|PP393_ARATH Pentatricopeptide repeat-containing protein At5g18950
OS=Arabidopsis thaliana GN=At5g18950 PE=2 SV=2
Length = 483
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P M+ Y+ ++ L NKK +EA ++++LK + D+ + +IR F + G A +
Sbjct: 281 PSMYIYQKIIKGLCMNKKQLEAYCIFKNLKDKGYAPDRVVYTTMIRGFCEKGWLGSARKL 340
Query: 129 YNEMRSSPATPISLPFRVILKG 150
+ EM P + V++ G
Sbjct: 341 WFEMIKKGMRPNEFAYNVMIHG 362
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/106 (18%), Positives = 44/106 (41%), Gaps = 7/106 (6%)
Query: 54 CMKLYDVVRKEIWY-------RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ 106
C K + +++W+ RP+ F Y M+ + ++ + + ++ R
Sbjct: 329 CEKGWLGSARKLWFEMIKKGMRPNEFAYNVMIHGHFKRGEISLVEAFYNEMLRNGYGGTM 388
Query: 107 HTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
+ +I+ F G EA I+ M + TP ++ + ++KG
Sbjct: 389 LSCNTMIKGFCSHGKSDEAFEIFKNMSETGVTPNAITYNALIKGFC 434
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110,
chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2
SV=2
Length = 1440
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 66/146 (45%), Gaps = 7/146 (4%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
+++ + +Q Q+ L ++LY ++ PD Y ++ L + + VEA + ++
Sbjct: 407 TIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLD 466
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
+ T+ +I ++ +G EA ++ M S P +L + V+L L+ E R+
Sbjct: 467 VGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRK 526
Query: 160 KVKDDFLELFPDMIV--YDPPEDLFE 183
L+ DMI + P L+E
Sbjct: 527 A-----WGLYRDMISDGHTPSYTLYE 547
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 53 LCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDI 112
L ++L D+VR RPD Y +L +R+ + A +V+ED++ D T+ +
Sbjct: 280 LAVELLDMVRNS-GLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAM 338
Query: 113 IRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
I + GL +EA ++ E+ P ++ + +L Y RE+ + E++ M
Sbjct: 339 ISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLL-----YAFARERNTEKVKEVYQQM 393
Score = 38.1 bits (87), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD Y +L AR + + K+V++ +++ D+ T+ II + G A+ +
Sbjct: 365 PDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQL 424
Query: 129 YNEMRS-SPATPISLPFRVILKGL 151
Y +M+ S P ++ + V++ L
Sbjct: 425 YKDMKGLSGRNPDAITYTVLIDSL 448
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 32 RLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAK 91
++ KS ++ +L F R +F K+Y + K Y P + YR M+ +L + K+V +A+
Sbjct: 854 KISKSSILLMLDAFARAGNIFEVKKIYSSM-KAAGYLPTIRLYRMMIELLCKGKRVRDAE 912
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Query: 30 VSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVE 89
+ R+ + L+S ++ D+ F M L ++V++ + +PD + Y ++ L KV E
Sbjct: 551 MDRVSYNTLISGCCGKKKLDEAF--MFLDEMVKRGL--KPDNYTYSILICGLFNMNKVEE 606
Query: 90 AKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILK 149
A Q W+D KR +L D +T+ +I + E ++EM S P ++ + +++
Sbjct: 607 AIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIR 666
Query: 150 G 150
Sbjct: 667 A 667
Score = 32.7 bits (73), Expect = 1.7, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 38/83 (45%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+P+ Y ++ R+ ++ A ++ ED+K + + + T+ +I+ S EA
Sbjct: 655 QPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKL 714
Query: 128 IYNEMRSSPATPISLPFRVILKG 150
++ EMR P + ++ G
Sbjct: 715 LFEEMRMEGLEPNVFHYTALIDG 737
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 71/141 (50%), Gaps = 7/141 (4%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
S++ F R+++V + L D + EI Y+PD+ Y ++ L + K+V +A +++++R
Sbjct: 160 SLVNGFCRRNRVSDAVSLVDKM-VEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIER 218
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
+ + + T+ ++ +S S+A + ++M TP + + +L + + E
Sbjct: 219 KGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLE 278
Query: 160 KVKDDFLELF-----PDMIVY 175
K+ F E+ PD++ Y
Sbjct: 279 -AKELFEEMVRMSIDPDIVTY 298
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 43/91 (47%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD++ Y +L L N ++ +A ++ED+++ E+ D T+ +IR +G EA +
Sbjct: 398 PDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSL 457
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
+ + P + + ++ GL E
Sbjct: 458 FCSLSLKGLKPDIVTYTTMMSGLCTKGLLHE 488
>sp|P0C8Q6|PP368_ARATH Putative pentatricopeptide repeat-containing protein At5g08310,
mitochondrial OS=Arabidopsis thaliana GN=At5g08310 PE=3
SV=1
Length = 832
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 20/94 (21%)
Query: 92 QVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG- 150
+++ED K +V+ T+ +I SG PSEA+F +NEM+ P + F +++G
Sbjct: 674 RMYEDEKNPDVI----TYTSLIHGLCASGRPSEAIFRWNEMKGKDCYPNRITFMALIQGL 729
Query: 151 ---------LIPYPEFREKVKDDFLELFPDMIVY 175
L+ + E EK E+ PD VY
Sbjct: 730 CKCGWSGEALVYFREMEEK------EMEPDSAVY 757
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
+VL F+R +L ++ K+ YR DM+ Y M +L+R ++ K + D+
Sbjct: 78 TVLNGFKRWGLAYL---FFNWASKQEGYRNDMYAYNAMASILSRARQNASLKALVVDVLN 134
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133
FG IR ++GL EA +++ +R
Sbjct: 135 SRCFMSPGAFGFFIRCLGNAGLVDEASSVFDRVR 168
Score = 32.3 bits (72), Expect = 1.9, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 33/73 (45%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+ Y ++ L + + EA W ++K ++ ++ TF +I+ G EA+
Sbjct: 682 PDVITYTSLIHGLCASGRPSEAIFRWNEMKGKDCYPNRITFMALIQGLCKCGWSGEALVY 741
Query: 129 YNEMRSSPATPIS 141
+ EM P S
Sbjct: 742 FREMEEKEMEPDS 754
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 77/163 (47%), Gaps = 16/163 (9%)
Query: 24 RFIKSHVSRLLKSDLVSVLA---EFQRQDQVFLCMKLYD-VVRKEIWYRPDMFFYRDMLM 79
R + + R + ++V+ A F ++ ++ KLYD ++++ I PD+F Y ++
Sbjct: 311 RLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI--DPDIFTYSSLIN 368
Query: 80 MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139
+ ++ EAK ++E + ++ + T+ +I+ F + E M ++ EM
Sbjct: 369 GFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG 428
Query: 140 ISLPFRVILKGLIPYPE-------FREKVKDDFLELFPDMIVY 175
++ + +++GL + F++ V D + PD+I Y
Sbjct: 429 NTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG---VPPDIITY 468
Score = 32.3 bits (72), Expect = 2.1, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 8/115 (6%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
RP++ Y ++ L + +A ++ D+ ++ + TF +I AF G EA
Sbjct: 287 RPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEK 346
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLEL------FPDMIVYD 176
+Y+EM P + ++ G + E EL FP+++ Y+
Sbjct: 347 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE--AKHMFELMISKDCFPNVVTYN 399
Score = 30.0 bits (66), Expect = 9.2, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 32/67 (47%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
+P++ Y M+ R EA ++ ++K + L + T+ +IRA G + +
Sbjct: 532 KPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAE 591
Query: 128 IYNEMRS 134
+ EMRS
Sbjct: 592 LIKEMRS 598
>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
SV=1
Length = 880
Score = 41.6 bits (96), Expect = 0.004, Method: Composition-based stats.
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 17/161 (10%)
Query: 30 VSRLLKSDLV-------SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLA 82
+S++LK V S+L F R + +K++DV+ KE+ P+ Y ++ L
Sbjct: 218 MSKILKIGFVLDSHIGTSLLLGFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLC 277
Query: 83 RNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISL 142
++ EA + + + + T+ +I+A D GL +A +++EM P
Sbjct: 278 EVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVH 337
Query: 143 PFRVILKGLIPYPEF-------REKVKDDFLELFPDMIVYD 176
+ V++ GL + R+ VKD +FP +I Y+
Sbjct: 338 TYTVLIDGLCRDGKIEEANGVCRKMVKD---RIFPSVITYN 375
>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060
OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
Length = 687
Score = 41.6 bits (96), Expect = 0.004, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 56/108 (51%)
Query: 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114
M+L+D + ++ P++ + M+ L++ +V + ++WE +K+ E D +T+ +I
Sbjct: 239 MELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIH 298
Query: 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
D+G +A ++NE+ A+ + + +L G + +E ++
Sbjct: 299 GLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLE 346
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 39 VSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLK 98
+V+ F ++ + MKLY+ + + PD+F Y ++ L + +V EAKQ+ + +
Sbjct: 248 TAVIDVFVKEGKFSEAMKLYEEMTRRC-VDPDVFTYNSLINGLCMHGRVDEAKQMLDLMV 306
Query: 99 REEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG 150
+ L D T+ +I F S E ++ EM ++ + I++G
Sbjct: 307 TKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQG 358
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+ Y ++ ++K+V E +++ ++ + ++ D T+ II+ + +G P A I
Sbjct: 312 PDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEI 371
Query: 129 YNEMRSSPATPISLPFRVILKGLI 152
++ M S P + ++L GL
Sbjct: 372 FSRMDSRPNIR---TYSILLYGLC 392
Score = 37.4 bits (85), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
R D Y ++ L + + +A ++ D+ +++ + TF +I F G SEAM
Sbjct: 206 RADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMK 265
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFRE-KVKDDFL---ELFPDMIVYDPPEDLF 182
+Y EM P + ++ GL + E K D + PD++ Y+ + F
Sbjct: 266 LYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGF 324
>sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140
OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1
Length = 874
Score = 41.2 bits (95), Expect = 0.005, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 58/126 (46%), Gaps = 1/126 (0%)
Query: 26 IKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEI-WYRPDMFFYRDMLMMLARN 84
+ S + + S L+SV++ F + + + + +VR +P ++ Y +L +
Sbjct: 66 LSSSIQKTKLSSLLSVVSIFAKSNHIDKAFPQFQLVRSRFPENKPSVYLYNLLLESCIKE 125
Query: 85 KKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPF 144
++V +++D+ + +TF +IRA DS A +++EM P F
Sbjct: 126 RRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTF 185
Query: 145 RVILKG 150
++++G
Sbjct: 186 GILVRG 191
Score = 32.3 bits (72), Expect = 1.8, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 52/117 (44%), Gaps = 14/117 (11%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P + + ++ L + V A+++++++ + ++ TFG ++R + +GL + + +
Sbjct: 145 PQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLEL 204
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLE---------LFPDMIVYD 176
N M S P + + I+ RE DD + L PD++ ++
Sbjct: 205 LNAMESFGVLPNKVIYNTIVSSFC-----REGRNDDSEKMVEKMREEGLVPDIVTFN 256
>sp|Q84J71|PP161_ARATH Pentatricopeptide repeat-containing protein At2g17670
OS=Arabidopsis thaliana GN=At2g17670 PE=2 SV=1
Length = 463
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 12/126 (9%)
Query: 34 LKSDLVS-------VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKK 86
+K DLVS V ++ ++L KL + ++PD F Y ++ K
Sbjct: 226 VKPDLVSFTILIDNVCNSKNLREAMYLVSKLGNA-----GFKPDCFLYNTIMKGFCTLSK 280
Query: 87 VVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRV 146
EA V++ +K E V DQ T+ +I S +G EA M + P + +
Sbjct: 281 GSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTS 340
Query: 147 ILKGLI 152
++ G+
Sbjct: 341 LMNGMC 346
Score = 34.3 bits (77), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 5/107 (4%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
KE PD Y ++ L++ +V EA+ + + D T+ ++ G
Sbjct: 292 KEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGES 351
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELF 169
A+ + EM + P + +L GL + ++ D +EL+
Sbjct: 352 LGALSLLEEMEARGCAPNDCTYNTLLHGLC-----KARLMDKGMELY 393
>sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630,
mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3
SV=1
Length = 627
Score = 40.4 bits (93), Expect = 0.007, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 10/135 (7%)
Query: 23 DRFIKSHVSRLLKSDLVSV------LAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRD 76
D + V + +K DLV + D+ F +K D++ PD Y
Sbjct: 452 DELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMS----INPDDVTYNC 507
Query: 77 MLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSP 136
++ L K EA+++ ++KR + D ++ +I +S G A + +EM S
Sbjct: 508 LMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLG 567
Query: 137 ATPISLPFRVILKGL 151
P L + +LKGL
Sbjct: 568 FNPTLLTYNALLKGL 582
>sp|Q8GZ63|PP397_ARATH Pentatricopeptide repeat-containing protein At5g25630
OS=Arabidopsis thaliana GN=At5g25630 PE=2 SV=2
Length = 574
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 16/164 (9%)
Query: 16 QSHPVRFD----RFIKSHV----SRLLKS--DLVSVLAEFQRQDQVFLCMKLYDVVRKEI 65
+S P++ RF KS V R ++S L++VL E R + K E
Sbjct: 19 RSTPIKTTGGQYRFCKSCVEGSSCRTVRSRTKLMNVLIERGRPHEAQTVFKTL----AET 74
Query: 66 WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEA 125
+RP + Y +L + K+ + ++++ D F +I AFS+SG +A
Sbjct: 75 GHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSGTKLDSIFFNAVINAFSESGNMEDA 134
Query: 126 MFIYNEMRSSPATPISLPFRVILK--GLIPYPEFREKVKDDFLE 167
+ +M+ P + + ++K G+ PE ++ D LE
Sbjct: 135 VQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLE 178
>sp|Q9FGR7|PP426_ARATH Pentatricopeptide repeat-containing protein At5g50280,
chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2
SV=1
Length = 723
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 34 LKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQV 93
L + +S L+ QR D + ++Y+ + K I PD ++ L + + AK+V
Sbjct: 275 LYNAAISGLSASQRYDDAW---EVYEAMDK-INVYPDNVTCAILITTLRKAGR--SAKEV 328
Query: 94 WE---DLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEM 132
WE + + V + Q FG ++++F D GL EA+ I EM
Sbjct: 329 WEIFEKMSEKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEM 370
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+ Y ++ + KKV +A +++ ++ ++ + + T+ +I+ F G P+ A +
Sbjct: 315 PDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEV 374
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
++ M S P + V+L L + KVK + +F DM
Sbjct: 375 FSHMVSRGVPPNIRTYNVLLHCLC----YNGKVKKALM-IFEDM 413
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/165 (19%), Positives = 71/165 (43%), Gaps = 15/165 (9%)
Query: 23 DRFIKSHVSRLLKSDLVSVLA---EFQRQDQVFLCMKLYD-VVRKEIWYRPDMFFYRDML 78
D ++ R +K D+++ A F ++ + +LY+ ++R I P++F Y ++
Sbjct: 232 DSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSI--APNIFTYTSLI 289
Query: 79 MMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPAT 138
V EA+Q++ ++ + D + +I F +AM I+ EM T
Sbjct: 290 NGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLT 349
Query: 139 PISLPFRVILKGL--IPYPEFREKVKDDFLELFPDMIVYDPPEDL 181
++ + +++G + P + E+F M+ P ++
Sbjct: 350 GNTITYTTLIQGFGQVGKPNVAQ-------EVFSHMVSRGVPPNI 387
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 63/149 (42%), Gaps = 8/149 (5%)
Query: 34 LKSDLV---SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEA 90
+K D+V +++ + V + L+D + + RPD+ Y ++ L + + +A
Sbjct: 173 IKPDVVMYTTIIDSLCKNGHVNYALSLFDQM-ENYGIRPDVVMYTSLVNGLCNSGRWRDA 231
Query: 91 KQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG 150
+ + + ++ D TF +I AF G +A +YNEM P + ++ G
Sbjct: 232 DSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLING 291
Query: 151 LIPYPEFREKVKDDFL----ELFPDMIVY 175
E + +L FPD++ Y
Sbjct: 292 FCMEGCVDEARQMFYLMETKGCFPDVVAY 320
>sp|Q66GP4|PP379_ARATH Pentatricopeptide repeat-containing protein At5g13770,
chloroplastic OS=Arabidopsis thaliana GN=At5g13770 PE=2
SV=1
Length = 609
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 56 KLYDVVR-----KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFG 110
+L D VR K+ +P+++ Y ++ M R + A+++W+++KR +VL D+ ++
Sbjct: 438 RLSDAVRLMAKMKQRGCKPNIWIYNSLIDMHGRAMDLRRAEKIWKEMKRAKVLPDKVSYT 497
Query: 111 DIIRAFSDSGLPSEAMFIYNEMR 133
+I A++ S + +Y E R
Sbjct: 498 SMISAYNRSKELERCVELYQEFR 520
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 35 KSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVW 94
K S+++ + R ++ C++LY R + D M+ + ++ ++ E ++
Sbjct: 493 KVSYTSMISAYNRSKELERCVELYQEFRMNRG-KIDRAMAGIMVGVFSKTSRIDELMRLL 551
Query: 95 EDLKREEVLFDQHTFGDIIRAFSDSGLPSE 124
+D+K E D + + A D+GL S+
Sbjct: 552 QDMKVEGTRLDARLYSSALNALRDAGLNSQ 581
>sp|Q8VZE4|PP299_ARATH Pentatricopeptide repeat-containing protein At4g01570
OS=Arabidopsis thaliana GN=At4g01570 PE=2 SV=1
Length = 805
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
+ PD+ Y ++ +L K +A VW++LK D T+ +I+ S +AM
Sbjct: 285 FGPDICTYNSLIHVLCLFGKAKDALIVWDELKVSGHEPDNSTYRILIQGCCKSYRMDDAM 344
Query: 127 FIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173
IY EM+ + P ++ + +L G + + E +LF M+
Sbjct: 345 RIYGEMQYNGFVPDTIVYNCLLDGTLKARKVTEAC-----QLFEKMV 386
>sp|Q9LSQ2|PP239_ARATH Putative pentatricopeptide repeat-containing protein At3g16890,
mitochondrial OS=Arabidopsis thaliana GN=PPR40 PE=3 SV=1
Length = 659
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 44/85 (51%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
KE PD++ Y + + +KV +A+++ + + R + D T+ +I+A S+SG
Sbjct: 557 KENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIKALSESGRE 616
Query: 123 SEAMFIYNEMRSSPATPISLPFRVI 147
SEA +++ + P S R++
Sbjct: 617 SEAREMFSSIERHGCVPDSYTKRLV 641
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWED 96
+ + LA Q QV +VR + + D++ ++ M + ++V+AK V++
Sbjct: 339 SVCATLASLQYGRQVHA-----HLVRCQ--FDDDVYVASVLMTMYVKCGELVKAKLVFDR 391
Query: 97 LKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156
++++ + II ++ GL EA+ I++EM SS ++P +V L ++
Sbjct: 392 FSSKDIIM----WNSIISGYASHGLGEEALKIFHEMPSSG----TMPNKVTLIAILTACS 443
Query: 157 FREKVKDDFLELFPDM 172
+ K+++ LE+F M
Sbjct: 444 YAGKLEEG-LEIFESM 458
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 40.0 bits (92), Expect = 0.011, Method: Composition-based stats.
Identities = 33/148 (22%), Positives = 66/148 (44%), Gaps = 13/148 (8%)
Query: 9 AKELKRLQSHPVRFDRFIKSHVSR--LLKSDLVSVLAEFQRQD---QVFLCMKLYDVVRK 63
AKE K +++ + FD I+ + + + L++ R D Q+F M D +
Sbjct: 321 AKEGKLIEAEKL-FDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCL-- 377
Query: 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123
PD+ Y ++ + KKVV+ +++ D+ R ++ + T+ +I F +
Sbjct: 378 -----PDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCD 432
Query: 124 EAMFIYNEMRSSPATPISLPFRVILKGL 151
A ++ +M S P + + +L GL
Sbjct: 433 NAQMVFKQMVSDGVHPNIMTYNTLLDGL 460
Score = 37.7 bits (86), Expect = 0.049, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
RPD+F Y ++ L + +A ++ D+ ++ + TF +I AF+ G EA
Sbjct: 272 RPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEK 331
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFL----ELFPDMIVYD 176
+++EM P + + ++ G + E + L + PD++ Y+
Sbjct: 332 LFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYN 384
Score = 35.0 bits (79), Expect = 0.31, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
Query: 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123
E+ Y+PD + ++ L ++ K EA + E + + D T+G +I G P
Sbjct: 163 EMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPD 222
Query: 124 EAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
A+ + N+M + + ++ L Y DD L LF +M
Sbjct: 223 LALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHV-----DDALNLFTEM 266
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 39.7 bits (91), Expect = 0.011, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 62/137 (45%), Gaps = 9/137 (6%)
Query: 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWE 95
S L+S L + R L D++ ++I PD+F + ++ + K+VEA+++++
Sbjct: 295 SSLISCLCNYGRWSDA--SRLLSDMIERKI--NPDVFTFSALIDAFVKEGKLVEAEKLYD 350
Query: 96 DLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYP 155
++ + + T+ +I F EA ++ M S P + + ++KG Y
Sbjct: 351 EMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYK 410
Query: 156 EFREKVKDDFLELFPDM 172
E +E+F +M
Sbjct: 411 RVEEG-----MEVFREM 422
Score = 38.9 bits (89), Expect = 0.022, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127
RP++ Y ++ L + +A ++ D+ ++ D TF +I AF G EA
Sbjct: 288 RPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEK 347
Query: 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFRE-KVKDDFL---ELFPDMIVYD 176
+Y+EM P + + ++ G + E K +F+ FPD++ Y+
Sbjct: 348 LYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYN 400
Score = 34.7 bits (78), Expect = 0.44, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 40/83 (48%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+ Y ++ + K+V E +V+ ++ + ++ + T+ +I+ +G A I
Sbjct: 394 PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEI 453
Query: 129 YNEMRSSPATPISLPFRVILKGL 151
+ EM S P + + +L GL
Sbjct: 454 FKEMVSDGVPPNIMTYNTLLDGL 476
Score = 33.5 bits (75), Expect = 0.99, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 5/106 (4%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
Y+P+ + ++ L + K EA + + + + D T+G ++ G A
Sbjct: 182 YQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAF 241
Query: 127 FIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172
+ N+M P L + I+ GL Y K DD L LF +M
Sbjct: 242 NLLNKMEQGKLEPGVLIYNTIIDGLCKY-----KHMDDALNLFKEM 282
>sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710,
mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3
SV=1
Length = 507
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 77/160 (48%), Gaps = 22/160 (13%)
Query: 13 KRLQSHPVRF----DRFIKSHVSRLLKS-DLVSVLAEFQRQDQVF--------LCM-KLY 58
+R++ + + F D F+K V +L+++ +L +V+ + VF LCM L
Sbjct: 252 RRIEPNVITFTALIDAFVK--VGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLL 309
Query: 59 DVVRKEIW------YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDI 112
D R+ + P+ Y ++ ++K+V + +++ ++ ++ V+ + T+ +
Sbjct: 310 DEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVL 369
Query: 113 IRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152
I+ + G P A ++N+M S A P + V+L GL
Sbjct: 370 IQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLC 409
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 39.7 bits (91), Expect = 0.012, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 41/83 (49%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD+ Y ++ L + + + +A +V + + V+ D T+ I+ + SG P EA+
Sbjct: 229 PDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGF 288
Query: 129 YNEMRSSPATPISLPFRVILKGL 151
+MRS P + + +++ L
Sbjct: 289 LKKMRSDGVEPDVVTYSLLMDYL 311
Score = 35.8 bits (81), Expect = 0.18, Method: Composition-based stats.
Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 54 CM---KLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFG 110
CM K++D + K +P++ Y +L A +VE + + + R + D + F
Sbjct: 317 CMEARKIFDSMTKR-GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFS 375
Query: 111 DIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148
+I A++ G +AM ++++MR P ++ + ++
Sbjct: 376 ILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVI 413
Score = 35.4 bits (80), Expect = 0.25, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD + + ++ A+ KV +A V+ ++++ + + T+G +I SG +AM
Sbjct: 369 PDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLY 428
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELF 169
+ +M +P ++ + ++ GL ++ E+ ++ LE+
Sbjct: 429 FEQMIDEGLSPGNIVYNSLIHGLCTCNKW-ERAEELILEML 468
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 22/112 (19%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99
S++ ++ +V KL++++ + I +P++ Y ++ K+ EA ++ +
Sbjct: 481 SIIDSHCKEGRVIESEKLFELMVR-IGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVS 539
Query: 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151
+ + T+ +I + +A+ ++ EM SS +P + + +IL+GL
Sbjct: 540 VGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGL 591
>sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730
OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1
Length = 638
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
P++ ++ +L R K++EAK+V +K + D F +++ ++ +G ++A +
Sbjct: 234 PNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDL 293
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPEDL 181
N+MR P + V+++ L EK D+ + +F +M Y D+
Sbjct: 294 MNDMRKRGFEPNVNCYTVLIQALCR----TEKRMDEAMRVFVEMERYGCEADI 342
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100
++ ++++Q C++L + +++ + PD+ Y ++ + + +V EA ++W +++
Sbjct: 383 IMVAHEKKEQFEECLELIEKMKRRGCH-PDLLIYNVVIRLACKLGEVKEAVRLWNEMEAN 441
Query: 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREK 160
+ TF +I F+ G EA + EM S S P LK L+
Sbjct: 442 GLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGI--FSAPQYGTLKSLL-----NNL 494
Query: 161 VKDDFLELFPDM 172
V+DD LE+ D+
Sbjct: 495 VRDDKLEMAKDV 506
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 67 YRPDMFFYRDMLMMLARN-KKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEA 125
+ P++ Y ++ L R K++ EA +V+ +++R D T+ +I F G+ +
Sbjct: 302 FEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKG 361
Query: 126 MFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLE------LFPDMIVYD 176
+ ++MR P + + I+ +F E + + +E PD+++Y+
Sbjct: 362 YSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECL--ELIEKMKRRGCHPDLLIYN 416
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD + + +L L +N V EA +V+ED+ RE+ + F ++ + G EA +
Sbjct: 200 PDEYVFGCLLDALCKNGSVKEASKVFEDM-REKFPPNLRYFTSLLYGWCREGKLMEAKEV 258
Query: 129 YNEMRSSPATPISLPFRVILKG 150
+M+ + P + F +L G
Sbjct: 259 LVQMKEAGLEPDIVVFTNLLSG 280
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 39.7 bits (91), Expect = 0.013, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128
PD + Y M+ L ++K+V EA +++ L+++ V + + +I + +G EA +
Sbjct: 495 PDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLM 554
Query: 129 YNEMRSSPATPISLPFRVILKGLIPYPEFRE 159
+M S P SL F ++ GL + +E
Sbjct: 555 LEKMLSKNCLPNSLTFNALIHGLCADGKLKE 585
Score = 31.2 bits (69), Expect = 4.1, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 37/73 (50%)
Query: 53 LCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDI 112
LC K+ R E+ Y+ + Y +L LAR V E KQV+ ++ ++V + +T+ +
Sbjct: 165 LCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKM 224
Query: 113 IRAFSDSGLPSEA 125
+ + G EA
Sbjct: 225 VNGYCKLGNVEEA 237
>sp|Q9ZUA2|PP141_ARATH Pentatricopeptide repeat-containing protein At2g01740
OS=Arabidopsis thaliana GN=At2g01740 PE=3 SV=1
Length = 559
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%)
Query: 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123
E PD F Y + L + +V+A ++ + +E +L D + +I + GL
Sbjct: 431 EAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTRMVQEGLLLDLLAYTTLIYGLASKGLMV 490
Query: 124 EAMFIYNEMRSSPATPISLPFRVILK 149
EA +++EM +S +P S F ++++
Sbjct: 491 EARQVFDEMLNSGISPDSAVFDLLIR 516
Score = 30.4 bits (67), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEA 125
D+ Y ++ LA +VEA+QV++++ + D F +IRA+ G + A
Sbjct: 472 DLLAYTTLIYGLASKGLMVEARQVFDEMLNSGISPDSAVFDLLIRAYEKEGNMAAA 527
>sp|Q8GYL7|PP361_ARATH Pentatricopeptide repeat-containing protein At5g02830,
chloroplastic OS=Arabidopsis thaliana GN=At5g02830 PE=2
SV=3
Length = 852
Score = 39.7 bits (91), Expect = 0.013, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 43/83 (51%)
Query: 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIY 129
D F Y ++ + A K A +V +D+K V + HT+ +I A +++GL +A ++
Sbjct: 373 DAFTYCTIIKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAGLVEQANHLF 432
Query: 130 NEMRSSPATPISLPFRVILKGLI 152
EM +S P S F ++L +
Sbjct: 433 EEMLASGCEPNSQCFNILLHACV 455
Score = 33.1 bits (74), Expect = 1.3, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEA-- 125
RPD+ Y + + A NK + A ++E+++R ++ + T+ +++A S G E
Sbjct: 591 RPDVVAYTTAIKICAENKCLKLAFSLFEEMRRYQIKPNWVTYNTLLKARSKYGSLLEVRQ 650
Query: 126 -MFIYNEMRSSPATP 139
+ IY +MR++ P
Sbjct: 651 CLAIYQDMRNAGYKP 665
>sp|Q9LN69|PPR50_ARATH Putative pentatricopeptide repeat-containing protein At1g19290
OS=Arabidopsis thaliana GN=At1g19290 PE=3 SV=2
Length = 904
Score = 39.3 bits (90), Expect = 0.016, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 16/95 (16%)
Query: 54 CMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQ--------------VWEDLKR 99
C++++++ K+ +RPD Y M+ +L+R + + K VW +L R
Sbjct: 87 CLEIFNLASKQQKFRPDYKAYCKMVHILSRARNYQQTKSYLCELVALNHSGFVVWGELVR 146
Query: 100 --EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEM 132
+E F F I++ +++ GL A+ +++ M
Sbjct: 147 VFKEFSFSPTVFDMILKVYAEKGLVKNALHVFDNM 181
Score = 38.5 bits (88), Expect = 0.030, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 29 HVSRLLKSD-------LVSVLAE-FQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMM 80
HV LLK + VL + + R Q+ ++++D + EI R + ++
Sbjct: 317 HVFELLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNM-IEIGVRTNTTICNSLING 375
Query: 81 LARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPI 140
++ ++VEA+Q++ + + D HT+ ++ + +G EA+ + ++M P
Sbjct: 376 YCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPT 435
Query: 141 SLPFRVILKG 150
+ + ++LKG
Sbjct: 436 VMTYNILLKG 445
>sp|Q9SVH3|PP328_ARATH Pentatricopeptide repeat-containing protein At4g20740
OS=Arabidopsis thaliana GN=At4g20740 PE=3 SV=1
Length = 727
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/100 (20%), Positives = 45/100 (45%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
+E +PD+F Y M+ L + + +VW++++R+E+ D +G ++ G
Sbjct: 290 RENLCKPDVFAYTAMIKTLVSEGNLDASLRVWDEMRRDEIKPDVMAYGTLVVGLCKDGRV 349
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
++ EM+ +RV+++G + + R
Sbjct: 350 ERGYELFMEMKGKQILIDREIYRVLIEGFVADGKVRSACN 389
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 43/90 (47%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
K+ ++P +F Y ++ L +N A V+ED K + ++ + TF +++ +G
Sbjct: 220 KKFGFKPRVFLYNRIMDALVKNGYFDLALAVYEDFKEDGLVEESTTFMILVKGLCKAGRI 279
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLI 152
E + I MR + P + ++K L+
Sbjct: 280 EEMLEILQRMRENLCKPDVFAYTAMIKTLV 309
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 38.9 bits (89), Expect = 0.020, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 74 YRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133
Y ++ L +N KV +A++++ +++ + + D ++G +I FS G +A I++EM
Sbjct: 595 YTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMV 654
Query: 134 SSPATPISLPFRVILKGLIPYPEFREKVKDDFLE-----LFPDMIVY 175
TP + + ++L G E EK K+ E L P+ + Y
Sbjct: 655 EEGLTPNVIIYNMLLGGFCRSGEI-EKAKELLDEMSVKGLHPNAVTY 700
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
KE PD+F Y +++ L++ K++ EA+ ++ + + T+G I + ++
Sbjct: 479 KEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEF 538
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLI 152
+ A EMR LP +V+ GLI
Sbjct: 539 ASADKYVKEMRECGV----LPNKVLCTGLI 564
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 38.9 bits (89), Expect = 0.021, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126
++P + Y ++ L R K + +++ + D F II A S+SG +AM
Sbjct: 350 HKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAM 409
Query: 127 FIYNEMRSSPATPISLPFRVILKG 150
I+ +M+ S P + F ++KG
Sbjct: 410 KIFEKMKESGCKPTASTFNTLIKG 433
Score = 32.3 bits (72), Expect = 1.8, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 46/100 (46%)
Query: 63 KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP 122
+E +PD+ + ++ + + ++++ D+ + D H F + + ++ +G P
Sbjct: 593 EEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEP 652
Query: 123 SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVK 162
+A I N+MR P + + I+ G E ++ ++
Sbjct: 653 EKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQ 692
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.140 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,180,978
Number of Sequences: 539616
Number of extensions: 3025659
Number of successful extensions: 10058
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 9487
Number of HSP's gapped (non-prelim): 630
length of query: 194
length of database: 191,569,459
effective HSP length: 111
effective length of query: 83
effective length of database: 131,672,083
effective search space: 10928782889
effective search space used: 10928782889
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)