Query 029406
Match_columns 194
No_of_seqs 128 out of 1236
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 12:24:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029406.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029406hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 99.9 5.6E-26 1.2E-30 206.1 18.0 141 34-180 613-753 (1060)
2 PLN03218 maturation of RBCL 1; 99.9 1.3E-25 2.9E-30 203.7 18.2 139 36-180 473-613 (1060)
3 PLN03081 pentatricopeptide (PP 99.9 6.3E-24 1.4E-28 187.9 13.9 126 37-172 362-488 (697)
4 PLN03081 pentatricopeptide (PP 99.9 2.5E-23 5.5E-28 184.1 16.8 125 38-172 262-386 (697)
5 PLN03077 Protein ECB2; Provisi 99.9 3.8E-22 8.2E-27 180.2 16.3 127 37-173 224-350 (857)
6 PLN03077 Protein ECB2; Provisi 99.9 3.7E-22 8E-27 180.2 15.4 133 33-175 321-453 (857)
7 PF13041 PPR_2: PPR repeat fam 99.7 2.5E-16 5.5E-21 93.0 6.8 50 69-118 1-50 (50)
8 PF13041 PPR_2: PPR repeat fam 99.7 2.8E-16 6.1E-21 92.8 6.2 50 104-153 1-50 (50)
9 KOG4422 Uncharacterized conser 99.2 2.1E-10 4.6E-15 93.8 13.1 130 37-171 209-342 (625)
10 PF12854 PPR_1: PPR repeat 99.2 3.1E-11 6.8E-16 65.1 4.0 32 101-132 2-33 (34)
11 PF12854 PPR_1: PPR repeat 99.2 5.7E-11 1.2E-15 64.0 4.0 34 65-98 1-34 (34)
12 PRK11788 tetratricopeptide rep 98.9 3.5E-08 7.6E-13 81.6 14.1 128 37-174 216-346 (389)
13 PRK11788 tetratricopeptide rep 98.9 1.2E-07 2.7E-12 78.3 15.8 132 39-179 184-315 (389)
14 KOG4422 Uncharacterized conser 98.8 6.5E-08 1.4E-12 79.5 11.7 106 70-180 206-311 (625)
15 TIGR00756 PPR pentatricopeptid 98.8 9.9E-09 2.1E-13 55.1 4.0 33 108-140 2-34 (35)
16 TIGR00756 PPR pentatricopeptid 98.7 2.2E-08 4.8E-13 53.6 4.4 35 72-106 1-35 (35)
17 PF13812 PPR_3: Pentatricopept 98.7 3.2E-08 7E-13 52.9 4.1 32 73-104 3-34 (34)
18 PF13812 PPR_3: Pentatricopept 98.7 3.6E-08 7.9E-13 52.7 3.7 33 107-139 2-34 (34)
19 TIGR02917 PEP_TPR_lipo putativ 98.6 8E-06 1.7E-10 73.3 19.1 130 38-176 570-699 (899)
20 PF06239 ECSIT: Evolutionarily 98.5 2.7E-06 5.8E-11 64.5 11.5 91 67-157 43-154 (228)
21 TIGR02917 PEP_TPR_lipo putativ 98.5 8.3E-06 1.8E-10 73.2 16.9 132 37-178 671-802 (899)
22 PF08579 RPM2: Mitochondrial r 98.5 1.6E-06 3.6E-11 58.9 8.9 75 78-152 32-115 (120)
23 PF01535 PPR: PPR repeat; Int 98.5 1.6E-07 3.5E-12 49.0 3.3 29 108-136 2-30 (31)
24 PF01535 PPR: PPR repeat; Int 98.4 2.4E-07 5.2E-12 48.3 3.2 31 72-102 1-31 (31)
25 PF10037 MRP-S27: Mitochondria 98.4 2.9E-06 6.2E-11 71.0 10.8 123 32-154 63-186 (429)
26 PF08579 RPM2: Mitochondrial r 98.4 7.3E-06 1.6E-10 55.8 10.5 80 39-119 29-117 (120)
27 PF13429 TPR_15: Tetratricopep 98.2 8.1E-06 1.8E-10 64.8 8.9 131 38-176 113-244 (280)
28 TIGR02521 type_IV_pilW type IV 98.2 0.00044 9.5E-09 51.9 17.6 130 37-174 67-197 (234)
29 PF13429 TPR_15: Tetratricopep 98.2 1.2E-05 2.5E-10 63.9 8.6 121 40-170 151-272 (280)
30 TIGR02521 type_IV_pilW type IV 98.2 0.00017 3.7E-09 54.2 14.4 134 36-177 32-166 (234)
31 PF10037 MRP-S27: Mitochondria 98.1 2.2E-05 4.7E-10 65.8 8.7 97 22-119 89-186 (429)
32 KOG4318 Bicoid mRNA stability 98.1 3E-06 6.4E-11 75.1 3.3 88 56-156 11-98 (1088)
33 KOG4318 Bicoid mRNA stability 98.0 0.00019 4.2E-09 64.0 13.3 98 55-156 189-286 (1088)
34 PF06239 ECSIT: Evolutionarily 98.0 0.00012 2.6E-09 55.6 10.0 87 35-122 47-154 (228)
35 TIGR00990 3a0801s09 mitochondr 97.8 0.0032 7E-08 55.6 18.7 130 37-175 367-496 (615)
36 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.001 2.2E-08 55.5 13.8 122 40-174 174-296 (395)
37 PRK15174 Vi polysaccharide exp 97.8 0.0031 6.7E-08 56.2 17.7 126 43-177 220-349 (656)
38 PRK15174 Vi polysaccharide exp 97.8 0.0036 7.8E-08 55.8 17.7 51 44-97 119-170 (656)
39 PRK12370 invasion protein regu 97.7 0.0045 9.8E-08 54.1 17.3 122 40-172 343-467 (553)
40 PF04733 Coatomer_E: Coatomer 97.7 0.00054 1.2E-08 55.0 10.1 134 40-183 136-273 (290)
41 TIGR02552 LcrH_SycD type III s 97.6 0.0047 1E-07 43.1 13.1 106 37-147 19-124 (135)
42 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0078 1.7E-07 40.6 13.8 109 37-146 4-115 (119)
43 TIGR00990 3a0801s09 mitochondr 97.6 0.0035 7.7E-08 55.4 14.9 125 41-175 337-462 (615)
44 PRK10370 formate-dependent nit 97.5 0.0034 7.4E-08 47.5 12.3 123 49-180 53-178 (198)
45 PRK15359 type III secretion sy 97.5 0.01 2.2E-07 42.5 14.1 103 38-145 27-129 (144)
46 PRK09782 bacteriophage N4 rece 97.5 0.011 2.4E-07 55.0 17.5 115 49-173 590-704 (987)
47 cd00189 TPR Tetratricopeptide 97.5 0.0039 8.4E-08 39.1 10.6 93 39-134 4-96 (100)
48 PF12895 Apc3: Anaphase-promot 97.5 0.00053 1.1E-08 44.3 6.2 82 48-131 2-83 (84)
49 PRK12370 invasion protein regu 97.4 0.05 1.1E-06 47.6 20.0 113 38-156 375-490 (553)
50 PF12921 ATP13: Mitochondrial 97.4 0.003 6.5E-08 44.3 10.0 83 70-152 1-99 (126)
51 KOG3941 Intermediate in Toll s 97.4 0.0032 6.9E-08 49.9 10.9 90 68-157 64-174 (406)
52 PF05843 Suf: Suppressor of fo 97.4 0.0024 5.2E-08 51.0 10.5 116 38-156 4-122 (280)
53 TIGR02552 LcrH_SycD type III s 97.4 0.0028 6.1E-08 44.3 9.8 108 67-181 12-120 (135)
54 PRK11447 cellulose synthase su 97.4 0.023 4.9E-07 54.0 18.2 121 40-174 578-699 (1157)
55 PRK09782 bacteriophage N4 rece 97.4 0.028 6.2E-07 52.4 18.4 126 41-176 548-673 (987)
56 PRK10747 putative protoheme IX 97.4 0.019 4.2E-07 48.1 15.9 128 40-177 87-218 (398)
57 cd00189 TPR Tetratricopeptide 97.3 0.0023 5.1E-08 40.2 8.0 95 74-175 3-97 (100)
58 KOG1126 DNA-binding cell divis 97.3 0.01 2.2E-07 51.6 13.7 166 4-180 436-625 (638)
59 PRK15359 type III secretion sy 97.3 0.0043 9.3E-08 44.4 9.9 112 55-178 13-124 (144)
60 PRK10049 pgaA outer membrane p 97.3 0.013 2.7E-07 53.3 14.9 127 38-174 52-178 (765)
61 PRK15179 Vi polysaccharide bio 97.3 0.037 7.9E-07 49.7 17.3 126 37-172 88-214 (694)
62 PRK14574 hmsH outer membrane p 97.3 0.0076 1.7E-07 55.0 13.2 130 40-175 297-445 (822)
63 PF09976 TPR_21: Tetratricopep 97.2 0.012 2.7E-07 41.9 11.8 123 38-170 15-142 (145)
64 PRK10747 putative protoheme IX 97.2 0.076 1.7E-06 44.5 18.1 123 37-172 265-387 (398)
65 PF04733 Coatomer_E: Coatomer 97.2 0.0036 7.8E-08 50.3 9.6 114 45-173 112-228 (290)
66 KOG3081 Vesicle coat complex C 97.2 0.019 4.1E-07 45.1 13.1 50 85-135 187-236 (299)
67 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.0079 1.7E-07 40.6 10.0 103 73-180 4-110 (119)
68 TIGR00540 hemY_coli hemY prote 97.2 0.049 1.1E-06 45.8 16.6 127 37-171 265-395 (409)
69 PRK11447 cellulose synthase su 97.2 0.037 7.9E-07 52.7 17.2 129 36-172 604-737 (1157)
70 PRK10049 pgaA outer membrane p 97.2 0.052 1.1E-06 49.4 17.5 136 32-177 12-147 (765)
71 TIGR03302 OM_YfiO outer membra 97.1 0.056 1.2E-06 41.5 15.1 131 37-174 72-231 (235)
72 COG4783 Putative Zn-dependent 97.1 0.025 5.4E-07 47.8 13.5 111 45-160 316-427 (484)
73 PRK14574 hmsH outer membrane p 97.1 0.015 3.3E-07 53.1 13.4 105 46-156 45-151 (822)
74 PRK11189 lipoprotein NlpI; Pro 97.1 0.053 1.1E-06 43.6 15.3 122 38-171 67-190 (296)
75 TIGR00540 hemY_coli hemY prote 97.1 0.097 2.1E-06 44.0 17.1 152 11-176 61-217 (409)
76 PF03704 BTAD: Bacterial trans 97.0 0.011 2.3E-07 42.1 9.3 56 41-98 68-123 (146)
77 PRK10370 formate-dependent nit 97.0 0.057 1.2E-06 40.8 13.6 108 37-150 75-186 (198)
78 KOG2003 TPR repeat-containing 97.0 0.054 1.2E-06 45.8 14.2 114 37-156 594-709 (840)
79 PF14559 TPR_19: Tetratricopep 96.9 0.0052 1.1E-07 37.6 6.5 52 47-100 3-54 (68)
80 PLN03088 SGT1, suppressor of 96.9 0.063 1.4E-06 44.4 14.6 105 42-151 9-113 (356)
81 PF09976 TPR_21: Tetratricopep 96.9 0.029 6.3E-07 40.0 11.1 93 36-131 49-143 (145)
82 COG5010 TadD Flp pilus assembl 96.9 0.13 2.9E-06 40.1 14.7 123 40-171 105-227 (257)
83 KOG1840 Kinesin light chain [C 96.8 0.034 7.4E-07 48.0 12.0 131 37-172 327-476 (508)
84 KOG1070 rRNA processing protei 96.8 0.081 1.8E-06 50.1 14.9 136 36-179 1531-1667(1710)
85 PF14559 TPR_19: Tetratricopep 96.8 0.0087 1.9E-07 36.6 6.4 64 82-148 2-65 (68)
86 PF03704 BTAD: Bacterial trans 96.7 0.016 3.4E-07 41.3 8.4 72 73-145 64-140 (146)
87 KOG4626 O-linked N-acetylgluco 96.7 0.013 2.9E-07 51.1 9.0 121 45-176 296-418 (966)
88 PRK11189 lipoprotein NlpI; Pro 96.6 0.13 2.8E-06 41.3 13.9 121 49-177 40-163 (296)
89 PF12921 ATP13: Mitochondrial 96.5 0.058 1.3E-06 37.8 10.1 84 38-121 5-103 (126)
90 COG3063 PilF Tfp pilus assembl 96.5 0.16 3.5E-06 39.2 13.0 128 36-172 36-165 (250)
91 PF12895 Apc3: Anaphase-promot 96.5 0.0022 4.9E-08 41.3 2.5 79 84-170 2-82 (84)
92 PRK02603 photosystem I assembl 96.5 0.077 1.7E-06 38.9 10.9 118 73-192 37-165 (172)
93 COG3071 HemY Uncharacterized e 96.5 0.18 4E-06 41.7 13.7 120 38-171 266-386 (400)
94 COG2956 Predicted N-acetylgluc 96.3 0.065 1.4E-06 43.4 10.2 132 35-176 36-171 (389)
95 PRK02603 photosystem I assembl 96.3 0.27 5.9E-06 36.0 14.3 113 38-155 38-165 (172)
96 KOG3941 Intermediate in Toll s 96.3 0.027 5.8E-07 44.9 7.6 83 49-132 86-185 (406)
97 PF13170 DUF4003: Protein of u 96.3 0.2 4.4E-06 40.4 12.9 152 21-177 40-213 (297)
98 TIGR03302 OM_YfiO outer membra 96.2 0.21 4.5E-06 38.3 12.7 132 36-174 34-194 (235)
99 KOG1129 TPR repeat-containing 96.2 0.2 4.3E-06 40.9 12.5 25 38-62 259-283 (478)
100 PF09295 ChAPs: ChAPs (Chs5p-A 96.2 0.24 5.3E-06 41.5 13.4 94 37-134 202-296 (395)
101 cd05804 StaR_like StaR_like; a 96.2 0.55 1.2E-05 38.2 16.2 95 73-173 116-213 (355)
102 KOG2002 TPR-containing nuclear 96.2 0.011 2.5E-07 53.5 5.7 117 48-172 625-742 (1018)
103 KOG1070 rRNA processing protei 96.1 0.18 3.9E-06 48.0 13.2 141 21-171 1446-1589(1710)
104 PRK15363 pathogenicity island 96.1 0.15 3.2E-06 37.1 10.3 91 41-135 41-132 (157)
105 KOG3785 Uncharacterized conser 96.1 0.055 1.2E-06 44.4 8.7 132 40-182 364-497 (557)
106 PRK15179 Vi polysaccharide bio 96.0 1.1 2.4E-05 40.4 18.0 106 38-148 123-229 (694)
107 KOG1129 TPR repeat-containing 95.9 0.066 1.4E-06 43.5 8.5 126 40-175 228-353 (478)
108 PLN03088 SGT1, suppressor of 95.9 0.071 1.5E-06 44.1 9.2 93 80-179 11-103 (356)
109 CHL00033 ycf3 photosystem I as 95.9 0.35 7.7E-06 35.2 12.0 91 39-131 39-138 (168)
110 CHL00033 ycf3 photosystem I as 95.9 0.16 3.5E-06 37.0 10.2 82 70-152 34-117 (168)
111 COG5010 TadD Flp pilus assembl 95.8 0.66 1.4E-05 36.4 14.1 120 46-174 77-196 (257)
112 KOG3081 Vesicle coat complex C 95.8 0.44 9.6E-06 37.7 12.4 93 40-135 178-271 (299)
113 PF13432 TPR_16: Tetratricopep 95.8 0.055 1.2E-06 32.7 6.1 52 45-98 7-58 (65)
114 COG2956 Predicted N-acetylgluc 95.8 0.23 5.1E-06 40.3 10.9 127 40-173 146-276 (389)
115 PF05843 Suf: Suppressor of fo 95.8 0.041 8.9E-07 43.9 6.9 101 71-178 1-102 (280)
116 PF12569 NARP1: NMDA receptor- 95.7 0.24 5.1E-06 43.1 11.8 104 41-152 44-154 (517)
117 KOG2003 TPR repeat-containing 95.7 0.54 1.2E-05 40.0 13.4 152 18-180 540-693 (840)
118 PF04840 Vps16_C: Vps16, C-ter 95.7 0.29 6.3E-06 39.9 11.5 99 37-156 179-277 (319)
119 KOG3616 Selective LIM binding 95.5 0.1 2.3E-06 46.7 8.9 114 38-170 735-848 (1636)
120 cd05804 StaR_like StaR_like; a 95.5 0.33 7.1E-06 39.5 11.7 121 45-175 53-177 (355)
121 PF12569 NARP1: NMDA receptor- 95.5 1.5 3.3E-05 38.2 16.1 144 21-172 129-288 (517)
122 KOG4626 O-linked N-acetylgluco 95.5 0.28 6.1E-06 43.2 11.1 130 36-177 321-453 (966)
123 KOG2796 Uncharacterized conser 95.3 0.79 1.7E-05 36.4 12.2 138 36-181 178-321 (366)
124 PF13432 TPR_16: Tetratricopep 95.3 0.15 3.2E-06 30.7 6.9 56 79-135 5-60 (65)
125 KOG2076 RNA polymerase III tra 95.3 0.49 1.1E-05 43.0 12.3 120 47-174 389-511 (895)
126 KOG2076 RNA polymerase III tra 95.2 0.49 1.1E-05 43.1 11.9 121 11-133 386-510 (895)
127 KOG1126 DNA-binding cell divis 95.0 0.19 4.2E-06 44.0 8.9 127 38-177 424-554 (638)
128 PRK10803 tol-pal system protei 95.0 1 2.2E-05 35.7 12.5 99 37-135 145-246 (263)
129 KOG4340 Uncharacterized conser 95.0 0.6 1.3E-05 37.7 11.0 99 46-146 155-282 (459)
130 KOG3060 Uncharacterized conser 95.0 1.3 2.8E-05 34.9 12.5 124 46-178 63-186 (289)
131 smart00299 CLH Clathrin heavy 94.8 0.92 2E-05 31.8 11.5 86 38-132 10-95 (140)
132 PRK10803 tol-pal system protei 94.8 0.42 9.1E-06 37.9 9.7 102 71-180 143-251 (263)
133 PF13424 TPR_12: Tetratricopep 94.8 0.11 2.4E-06 32.5 5.3 61 72-132 6-72 (78)
134 PF13371 TPR_9: Tetratricopept 94.7 0.34 7.4E-06 29.7 7.5 53 80-133 4-56 (73)
135 KOG1914 mRNA cleavage and poly 94.5 1.7 3.7E-05 37.8 13.0 125 37-170 368-496 (656)
136 COG3071 HemY Uncharacterized e 94.5 1.8 3.9E-05 36.0 12.8 109 21-134 281-389 (400)
137 COG4783 Putative Zn-dependent 94.3 3.1 6.7E-05 35.6 14.2 89 40-132 345-434 (484)
138 COG3063 PilF Tfp pilus assembl 94.2 2.1 4.5E-05 33.2 12.7 128 36-172 70-199 (250)
139 PF12688 TPR_5: Tetratrico pep 94.1 1.1 2.3E-05 31.1 9.5 88 42-132 8-101 (120)
140 PRK14720 transcript cleavage f 94.1 1.7 3.7E-05 40.3 13.0 96 35-135 83-178 (906)
141 KOG2002 TPR-containing nuclear 94.0 0.42 9.2E-06 43.8 8.9 130 36-172 564-706 (1018)
142 PF13170 DUF4003: Protein of u 93.9 0.66 1.4E-05 37.4 9.3 97 50-148 118-224 (297)
143 PRK15363 pathogenicity island 93.9 0.92 2E-05 33.0 9.1 96 74-176 38-133 (157)
144 PF13414 TPR_11: TPR repeat; P 93.9 0.55 1.2E-05 28.4 7.1 58 73-131 5-63 (69)
145 PF13929 mRNA_stabil: mRNA sta 93.9 2.8 6E-05 33.6 12.6 139 28-171 105-263 (292)
146 KOG1915 Cell cycle control pro 93.7 0.91 2E-05 38.9 9.9 84 47-135 153-236 (677)
147 KOG2053 Mitochondrial inherita 93.7 1.4 3E-05 40.3 11.5 111 36-151 42-154 (932)
148 PF13762 MNE1: Mitochondrial s 93.7 1.3 2.9E-05 31.7 9.5 79 74-152 42-126 (145)
149 COG3629 DnrI DNA-binding trans 93.6 1.3 2.9E-05 35.3 10.3 81 71-152 153-238 (280)
150 PF10602 RPN7: 26S proteasome 93.6 2.2 4.8E-05 31.6 11.2 122 9-133 5-140 (177)
151 PLN03098 LPA1 LOW PSII ACCUMUL 93.5 0.79 1.7E-05 38.9 9.2 64 70-135 74-141 (453)
152 KOG1155 Anaphase-promoting com 93.3 3.3 7.2E-05 35.4 12.4 125 38-171 367-491 (559)
153 KOG0985 Vesicle coat protein c 93.2 3.9 8.5E-05 38.5 13.5 83 37-128 1106-1188(1666)
154 PF13414 TPR_11: TPR repeat; P 93.2 0.14 3.1E-06 31.1 3.5 64 105-174 2-66 (69)
155 KOG1173 Anaphase-promoting com 93.1 1.8 3.9E-05 37.7 10.8 119 44-171 389-514 (611)
156 KOG1915 Cell cycle control pro 93.0 2.8 6.1E-05 36.1 11.7 120 40-171 112-232 (677)
157 PF13371 TPR_9: Tetratricopept 92.9 0.69 1.5E-05 28.3 6.4 57 43-101 3-59 (73)
158 PF02284 COX5A: Cytochrome c o 92.8 0.79 1.7E-05 30.8 6.7 58 91-149 30-87 (108)
159 KOG0985 Vesicle coat protein c 92.8 3.9 8.5E-05 38.5 12.9 127 21-156 1119-1264(1666)
160 PF13762 MNE1: Mitochondrial s 92.7 2.7 5.9E-05 30.1 10.8 88 38-125 42-134 (145)
161 KOG3060 Uncharacterized conser 92.6 4.2 9.1E-05 32.1 13.3 87 46-135 97-183 (289)
162 KOG0547 Translocase of outer m 92.6 1.7 3.7E-05 37.4 9.9 129 34-172 424-563 (606)
163 KOG2053 Mitochondrial inherita 92.4 1.9 4E-05 39.5 10.4 120 45-170 19-138 (932)
164 KOG1155 Anaphase-promoting com 92.4 6.5 0.00014 33.7 13.3 129 40-178 335-464 (559)
165 PRK15331 chaperone protein Sic 92.3 1.9 4.2E-05 31.6 8.7 89 43-135 45-134 (165)
166 KOG4570 Uncharacterized conser 92.3 1.5 3.3E-05 35.6 8.8 93 41-135 70-164 (418)
167 COG3629 DnrI DNA-binding trans 92.3 4.1 8.8E-05 32.6 11.2 78 36-115 154-236 (280)
168 PF13424 TPR_12: Tetratricopep 92.2 1.3 2.8E-05 27.5 7.1 62 37-98 7-73 (78)
169 KOG2376 Signal recognition par 92.1 1.9 4.2E-05 37.8 9.8 56 37-94 14-69 (652)
170 smart00299 CLH Clathrin heavy 92.0 1.8 4E-05 30.3 8.4 55 74-130 10-64 (140)
171 cd00923 Cyt_c_Oxidase_Va Cytoc 92.0 1.2 2.7E-05 29.6 6.7 45 89-133 25-69 (103)
172 PF00637 Clathrin: Region in C 91.9 0.052 1.1E-06 38.4 0.2 85 40-132 12-96 (143)
173 KOG4570 Uncharacterized conser 91.8 0.33 7.1E-06 39.3 4.6 60 40-101 106-165 (418)
174 PLN03098 LPA1 LOW PSII ACCUMUL 91.8 4.5 9.7E-05 34.5 11.5 62 36-100 76-141 (453)
175 PF13929 mRNA_stabil: mRNA sta 91.8 5.7 0.00012 31.9 13.0 92 40-131 169-263 (292)
176 KOG1173 Anaphase-promoting com 91.6 2.3 4.9E-05 37.1 9.6 104 47-153 426-534 (611)
177 PRK14720 transcript cleavage f 91.3 6.6 0.00014 36.6 12.9 123 36-170 32-173 (906)
178 KOG3785 Uncharacterized conser 91.3 1.6 3.5E-05 36.1 8.2 117 48-172 336-454 (557)
179 PF12688 TPR_5: Tetratrico pep 91.2 3.7 8E-05 28.4 12.1 56 80-135 10-67 (120)
180 KOG1840 Kinesin light chain [C 90.7 3.5 7.5E-05 35.9 10.1 103 69-171 197-315 (508)
181 PF00637 Clathrin: Region in C 90.5 0.089 1.9E-06 37.2 0.3 55 76-130 12-66 (143)
182 PF07035 Mic1: Colon cancer-as 90.4 5.7 0.00012 29.3 11.3 24 109-132 92-115 (167)
183 PF04840 Vps16_C: Vps16, C-ter 90.4 3.2 7E-05 33.9 9.2 86 71-171 177-262 (319)
184 cd00280 TRFH Telomeric Repeat 90.1 4.9 0.00011 30.1 9.0 71 4-85 87-157 (200)
185 KOG0547 Translocase of outer m 90.0 9 0.00019 33.2 11.6 126 38-172 363-488 (606)
186 PF14938 SNAP: Soluble NSF att 89.8 5.6 0.00012 31.6 10.2 127 38-172 78-222 (282)
187 PRK10866 outer membrane biogen 89.5 8.5 0.00019 30.0 14.9 130 35-170 69-236 (243)
188 KOG1914 mRNA cleavage and poly 89.1 5.7 0.00012 34.7 9.9 87 51-139 347-435 (656)
189 KOG3617 WD40 and TPR repeat-co 88.8 9 0.00019 35.5 11.2 81 35-131 911-992 (1416)
190 PLN02789 farnesyltranstransfer 88.7 12 0.00026 30.6 12.5 98 50-151 87-186 (320)
191 PF09613 HrpB1_HrpK: Bacterial 88.4 7.9 0.00017 28.3 11.4 98 37-142 12-113 (160)
192 cd00923 Cyt_c_Oxidase_Va Cytoc 88.3 5.4 0.00012 26.6 7.4 60 53-114 25-84 (103)
193 PF13176 TPR_7: Tetratricopept 88.3 1 2.2E-05 23.8 3.4 25 108-132 1-25 (36)
194 KOG2047 mRNA splicing factor [ 88.0 13 0.00029 33.3 11.5 111 40-153 174-293 (835)
195 KOG1128 Uncharacterized conser 87.8 3.9 8.4E-05 36.8 8.3 88 69-172 396-483 (777)
196 TIGR02561 HrpB1_HrpK type III 87.8 8.5 0.00018 27.8 10.3 102 38-144 13-115 (153)
197 PRK10153 DNA-binding transcrip 87.7 17 0.00038 31.8 12.3 80 69-152 418-497 (517)
198 cd08819 CARD_MDA5_2 Caspase ac 87.2 5.7 0.00012 25.9 6.9 61 90-156 21-81 (88)
199 KOG0553 TPR repeat-containing 87.1 14 0.00031 29.7 11.2 99 46-151 92-192 (304)
200 COG5107 RNA14 Pre-mRNA 3'-end 86.9 3.8 8.2E-05 35.1 7.5 121 41-172 403-528 (660)
201 COG4700 Uncharacterized protei 86.9 12 0.00025 28.5 10.0 95 38-135 92-189 (251)
202 KOG1156 N-terminal acetyltrans 86.6 15 0.00033 32.7 11.2 94 40-137 376-470 (700)
203 PF14938 SNAP: Soluble NSF att 86.3 15 0.00032 29.2 15.4 133 38-174 117-265 (282)
204 KOG3616 Selective LIM binding 86.2 6.2 0.00013 36.0 8.7 48 38-95 768-815 (1636)
205 PF13512 TPR_18: Tetratricopep 86.0 9.1 0.0002 27.4 8.1 93 42-135 17-128 (142)
206 PF10602 RPN7: 26S proteasome 85.7 6.5 0.00014 29.1 7.6 64 71-134 36-101 (177)
207 PRK10153 DNA-binding transcrip 85.6 24 0.00052 30.9 15.7 119 50-178 357-485 (517)
208 PF02284 COX5A: Cytochrome c o 85.5 8.9 0.00019 25.9 7.4 60 53-114 28-87 (108)
209 KOG1125 TPR repeat-containing 85.3 15 0.00033 32.2 10.4 108 52-162 411-519 (579)
210 PF10300 DUF3808: Protein of u 84.7 15 0.00031 31.8 10.3 120 48-172 246-373 (468)
211 COG4700 Uncharacterized protei 84.6 15 0.00034 27.9 16.2 108 58-172 76-186 (251)
212 PLN02789 farnesyltranstransfer 84.6 20 0.00044 29.2 16.9 65 52-119 125-189 (320)
213 PF13512 TPR_18: Tetratricopep 84.2 13 0.00028 26.6 10.9 63 71-134 11-75 (142)
214 COG1729 Uncharacterized protei 84.2 14 0.0003 29.3 9.1 58 77-134 184-243 (262)
215 PF13176 TPR_7: Tetratricopept 83.4 3.8 8.2E-05 21.5 4.1 26 73-98 1-26 (36)
216 COG1729 Uncharacterized protei 83.3 21 0.00046 28.3 10.5 108 71-186 142-256 (262)
217 PF13374 TPR_10: Tetratricopep 83.0 3.5 7.6E-05 21.7 4.1 28 106-133 2-29 (42)
218 KOG0553 TPR repeat-containing 83.0 8.3 0.00018 31.1 7.4 90 81-178 91-181 (304)
219 PRK15331 chaperone protein Sic 82.6 8.3 0.00018 28.3 6.8 93 73-174 40-133 (165)
220 PF11848 DUF3368: Domain of un 82.6 4.8 0.0001 22.9 4.6 32 118-149 14-45 (48)
221 PF13428 TPR_14: Tetratricopep 82.4 5.7 0.00012 21.7 4.8 27 109-135 4-30 (44)
222 PF11663 Toxin_YhaV: Toxin wit 82.1 1.6 3.5E-05 30.9 2.9 33 117-151 106-138 (140)
223 PF10300 DUF3808: Protein of u 81.9 24 0.00052 30.5 10.5 135 33-174 186-333 (468)
224 KOG2047 mRNA splicing factor [ 81.8 8.2 0.00018 34.6 7.5 74 44-119 219-294 (835)
225 KOG4340 Uncharacterized conser 81.6 28 0.0006 28.5 10.1 127 37-174 46-206 (459)
226 PF07163 Pex26: Pex26 protein; 81.6 26 0.00056 28.2 9.7 89 39-129 87-181 (309)
227 KOG0543 FKBP-type peptidyl-pro 81.6 23 0.0005 29.8 9.8 106 44-152 217-335 (397)
228 PF08631 SPO22: Meiosis protei 81.6 25 0.00053 27.9 13.2 62 73-135 86-150 (278)
229 COG5107 RNA14 Pre-mRNA 3'-end 81.4 18 0.00038 31.3 9.1 62 69-131 395-457 (660)
230 COG4235 Cytochrome c biogenesi 81.0 20 0.00044 28.8 9.0 103 70-180 155-261 (287)
231 PF10579 Rapsyn_N: Rapsyn N-te 81.0 6 0.00013 25.3 4.9 50 77-127 13-64 (80)
232 COG5108 RPO41 Mitochondrial DN 80.8 11 0.00024 34.1 7.9 94 36-132 29-129 (1117)
233 KOG0495 HAT repeat protein [RN 80.6 45 0.00097 30.3 14.3 85 48-135 563-647 (913)
234 KOG2050 Puf family RNA-binding 80.6 33 0.00071 30.4 10.6 62 1-62 130-199 (652)
235 PF11846 DUF3366: Domain of un 80.5 16 0.00035 27.1 8.2 58 76-133 113-171 (193)
236 KOG4077 Cytochrome c oxidase, 80.4 12 0.00027 26.3 6.7 60 89-149 67-126 (149)
237 PF13374 TPR_10: Tetratricopep 80.3 6.3 0.00014 20.7 4.5 28 72-99 3-30 (42)
238 PF04184 ST7: ST7 protein; In 80.0 40 0.00086 29.4 13.3 75 41-115 265-340 (539)
239 COG4235 Cytochrome c biogenesi 79.7 30 0.00066 27.8 14.1 113 36-151 157-270 (287)
240 PF04184 ST7: ST7 protein; In 79.2 25 0.00054 30.6 9.4 70 79-149 267-339 (539)
241 PF11663 Toxin_YhaV: Toxin wit 79.0 2.1 4.6E-05 30.3 2.6 31 84-116 108-138 (140)
242 COG3898 Uncharacterized membra 78.8 40 0.00086 28.7 13.9 41 22-62 102-147 (531)
243 PF11848 DUF3368: Domain of un 78.0 10 0.00023 21.5 5.0 31 83-113 14-44 (48)
244 COG4455 ImpE Protein of avirul 77.8 26 0.00056 27.3 8.3 75 40-116 6-82 (273)
245 PF13525 YfiO: Outer membrane 77.4 28 0.0006 26.1 14.2 125 31-156 38-193 (203)
246 KOG0495 HAT repeat protein [RN 77.4 57 0.0012 29.7 14.8 86 46-135 595-680 (913)
247 PRK04841 transcriptional regul 77.4 40 0.00086 31.3 11.2 123 44-171 500-637 (903)
248 PF11846 DUF3366: Domain of un 76.9 18 0.0004 26.8 7.5 53 118-175 120-173 (193)
249 PF13428 TPR_14: Tetratricopep 76.7 7.7 0.00017 21.2 4.1 28 73-100 3-30 (44)
250 PRK04841 transcriptional regul 76.0 46 0.00099 30.9 11.2 121 45-171 462-598 (903)
251 PF13281 DUF4071: Domain of un 75.1 49 0.0011 27.8 10.0 80 38-117 144-228 (374)
252 PRK10564 maltose regulon perip 74.8 10 0.00022 30.6 5.7 47 67-113 252-299 (303)
253 TIGR02508 type_III_yscG type I 74.5 24 0.00051 23.9 7.9 86 49-145 19-106 (115)
254 COG4105 ComL DNA uptake lipopr 74.1 42 0.0009 26.5 11.1 73 46-119 45-119 (254)
255 KOG1585 Protein required for f 74.1 43 0.00092 26.6 10.5 116 47-168 122-249 (308)
256 KOG3617 WD40 and TPR repeat-co 74.0 55 0.0012 30.7 10.5 130 36-183 758-897 (1416)
257 KOG1128 Uncharacterized conser 74.0 16 0.00035 33.1 7.2 115 47-171 497-612 (777)
258 PRK13341 recombination factor 73.9 74 0.0016 29.3 12.3 112 66-180 192-332 (725)
259 KOG2114 Vacuolar assembly/sort 73.3 44 0.00095 31.0 9.7 109 35-156 334-446 (933)
260 PF13281 DUF4071: Domain of un 72.7 50 0.0011 27.7 9.5 98 53-151 121-227 (374)
261 PF09205 DUF1955: Domain of un 72.6 32 0.0007 24.6 10.6 69 69-138 84-152 (161)
262 KOG2610 Uncharacterized conser 72.5 45 0.00097 27.8 8.9 107 47-156 115-224 (491)
263 PF11817 Foie-gras_1: Foie gra 72.0 45 0.00097 26.0 9.6 58 75-132 182-244 (247)
264 PF00515 TPR_1: Tetratricopept 71.9 11 0.00024 18.9 4.1 28 107-134 2-29 (34)
265 PF14689 SPOB_a: Sensor_kinase 70.1 14 0.0003 22.2 4.4 23 40-62 28-50 (62)
266 KOG4567 GTPase-activating prot 69.7 27 0.00059 28.5 7.0 71 55-131 263-343 (370)
267 PF14669 Asp_Glu_race_2: Putat 69.5 11 0.00023 28.7 4.4 67 75-144 136-216 (233)
268 PF09205 DUF1955: Domain of un 69.3 39 0.00085 24.2 12.3 70 105-180 85-154 (161)
269 PF13525 YfiO: Outer membrane 69.0 46 0.001 24.9 11.5 61 40-100 10-71 (203)
270 COG4455 ImpE Protein of avirul 68.3 41 0.00089 26.2 7.4 78 74-152 4-83 (273)
271 PF10366 Vps39_1: Vacuolar sor 67.6 17 0.00036 24.6 4.8 26 74-99 42-67 (108)
272 PF01475 FUR: Ferric uptake re 67.3 13 0.00028 25.4 4.3 46 40-86 12-57 (120)
273 PRK11639 zinc uptake transcrip 67.1 25 0.00054 25.8 6.0 49 40-89 30-78 (169)
274 COG1747 Uncharacterized N-term 67.1 91 0.002 27.6 13.1 95 32-132 63-157 (711)
275 PF11207 DUF2989: Protein of u 67.0 54 0.0012 25.0 9.1 78 77-156 113-193 (203)
276 PF09454 Vps23_core: Vps23 cor 66.8 14 0.00029 22.7 3.8 48 69-117 6-53 (65)
277 cd07153 Fur_like Ferric uptake 66.3 19 0.00042 24.2 5.0 46 41-87 6-51 (116)
278 KOG4162 Predicted calmodulin-b 66.0 1.1E+02 0.0024 28.2 11.4 123 39-171 654-779 (799)
279 PRK15180 Vi polysaccharide bio 65.9 47 0.001 29.0 8.0 87 48-138 302-389 (831)
280 PF10579 Rapsyn_N: Rapsyn N-te 65.2 34 0.00073 21.9 5.7 54 40-94 12-66 (80)
281 KOG2908 26S proteasome regulat 64.9 81 0.0017 26.2 14.6 148 4-151 3-166 (380)
282 KOG1125 TPR repeat-containing 63.8 1.1E+02 0.0023 27.2 10.5 116 38-156 356-479 (579)
283 KOG1538 Uncharacterized conser 63.8 46 0.001 30.2 7.8 85 41-137 753-848 (1081)
284 KOG1174 Anaphase-promoting com 63.3 98 0.0021 26.6 11.8 56 108-170 440-495 (564)
285 PRK08691 DNA polymerase III su 62.8 1.3E+02 0.0027 27.7 11.3 86 52-140 181-279 (709)
286 COG5108 RPO41 Mitochondrial DN 62.6 61 0.0013 29.6 8.3 74 76-152 33-114 (1117)
287 KOG1538 Uncharacterized conser 62.5 7.7 0.00017 34.8 2.9 108 71-185 556-684 (1081)
288 KOG2376 Signal recognition par 61.5 1.2E+02 0.0026 27.1 15.3 115 37-155 378-506 (652)
289 PRK10866 outer membrane biogen 61.3 76 0.0016 24.7 12.3 58 40-97 180-238 (243)
290 TIGR03504 FimV_Cterm FimV C-te 61.2 18 0.0004 20.2 3.4 22 113-134 6-27 (44)
291 COG0735 Fur Fe2+/Zn2+ uptake r 61.1 27 0.00058 25.0 5.1 48 39-87 24-71 (145)
292 KOG4077 Cytochrome c oxidase, 60.2 48 0.001 23.5 5.9 45 55-100 69-113 (149)
293 PF10366 Vps39_1: Vacuolar sor 59.6 52 0.0011 22.2 7.1 27 108-134 41-67 (108)
294 PRK10564 maltose regulon perip 59.3 21 0.00045 28.9 4.6 44 101-144 251-295 (303)
295 PRK13342 recombination factor 59.3 1.1E+02 0.0024 25.8 12.6 72 109-180 230-304 (413)
296 KOG0403 Neoplastic transformat 59.1 1.1E+02 0.0023 26.6 8.9 108 3-119 473-587 (645)
297 PF07079 DUF1347: Protein of u 58.8 99 0.0021 26.9 8.6 45 75-119 132-180 (549)
298 COG3118 Thioredoxin domain-con 58.8 97 0.0021 25.1 11.7 77 21-100 121-197 (304)
299 PF04053 Coatomer_WDAD: Coatom 58.2 46 0.001 28.6 6.9 113 38-170 298-426 (443)
300 COG0735 Fur Fe2+/Zn2+ uptake r 57.2 55 0.0012 23.3 6.2 39 64-103 14-52 (145)
301 KOG0548 Molecular co-chaperone 57.1 51 0.0011 28.8 6.8 103 44-151 11-114 (539)
302 PF04053 Coatomer_WDAD: Coatom 57.1 1.3E+02 0.0028 25.9 10.3 79 37-131 349-427 (443)
303 TIGR02508 type_III_yscG type I 55.7 49 0.0011 22.4 5.2 81 86-178 20-100 (115)
304 PF12796 Ank_2: Ankyrin repeat 55.5 44 0.00095 20.8 5.1 56 77-141 29-87 (89)
305 PF07721 TPR_4: Tetratricopept 55.1 23 0.00051 16.9 2.9 15 80-94 10-24 (26)
306 PF10475 DUF2450: Protein of u 54.9 1.1E+02 0.0024 24.5 10.0 82 40-127 132-218 (291)
307 PRK07764 DNA polymerase III su 54.4 1.9E+02 0.004 27.2 10.5 83 55-140 185-281 (824)
308 PF13934 ELYS: Nuclear pore co 54.2 99 0.0022 23.8 10.7 108 33-152 74-183 (226)
309 KOG1127 TPR repeat-containing 54.2 2E+02 0.0044 27.7 10.3 84 45-133 572-657 (1238)
310 PRK11639 zinc uptake transcrip 54.0 85 0.0018 23.0 7.0 62 61-124 17-78 (169)
311 PF06576 DUF1133: Protein of u 53.9 88 0.0019 23.1 7.1 28 2-29 56-84 (176)
312 PRK14951 DNA polymerase III su 53.3 1.7E+02 0.0038 26.4 10.9 83 55-140 189-284 (618)
313 KOG1156 N-terminal acetyltrans 52.9 1.8E+02 0.0039 26.4 13.6 96 68-171 366-464 (700)
314 PF05974 DUF892: Domain of unk 52.7 86 0.0019 22.7 6.7 118 8-132 6-135 (159)
315 KOG0276 Vesicle coat complex C 52.6 1.5E+02 0.0034 26.7 9.0 80 71-170 666-745 (794)
316 PF11207 DUF2989: Protein of u 52.4 1E+02 0.0022 23.5 7.9 79 46-127 118-199 (203)
317 PF13174 TPR_6: Tetratricopept 51.7 29 0.00062 16.9 3.4 22 41-62 6-27 (33)
318 KOG4162 Predicted calmodulin-b 51.6 1.7E+02 0.0037 27.0 9.4 95 58-154 311-406 (799)
319 COG4865 Glutamate mutase epsil 50.7 1.2E+02 0.0027 25.2 7.7 65 69-136 43-118 (485)
320 PF02847 MA3: MA3 domain; Int 50.7 71 0.0015 21.1 6.9 65 36-103 3-69 (113)
321 PF09477 Type_III_YscG: Bacter 50.5 79 0.0017 21.6 8.7 81 48-136 19-99 (116)
322 PF11817 Foie-gras_1: Foie gra 50.3 1.2E+02 0.0026 23.6 8.7 61 108-169 180-245 (247)
323 PF13431 TPR_17: Tetratricopep 50.2 18 0.0004 18.6 2.1 21 105-125 12-32 (34)
324 smart00164 TBC Domain in Tre-2 49.7 64 0.0014 23.7 5.9 83 50-136 108-197 (199)
325 PRK14958 DNA polymerase III su 49.7 1.8E+02 0.0039 25.5 12.1 84 55-141 184-280 (509)
326 PRK07003 DNA polymerase III su 49.2 2.3E+02 0.005 26.5 11.7 86 52-140 181-279 (830)
327 COG3947 Response regulator con 48.7 1.5E+02 0.0032 24.3 8.7 57 75-132 283-339 (361)
328 cd07153 Fur_like Ferric uptake 48.6 46 0.00099 22.3 4.5 49 76-124 5-53 (116)
329 KOG2796 Uncharacterized conser 48.2 1.5E+02 0.0032 24.0 14.4 123 41-176 155-282 (366)
330 KOG1130 Predicted G-alpha GTPa 48.2 19 0.00041 30.7 2.9 48 81-128 27-77 (639)
331 KOG1174 Anaphase-promoting com 47.5 1.9E+02 0.004 25.0 13.5 81 48-133 209-293 (564)
332 PF11768 DUF3312: Protein of u 47.3 1.2E+02 0.0026 26.8 7.6 94 38-135 411-507 (545)
333 COG4105 ComL DNA uptake lipopr 46.9 1.4E+02 0.0031 23.6 13.6 153 30-190 66-247 (254)
334 smart00804 TAP_C C-terminal do 46.7 22 0.00047 21.6 2.3 24 48-71 38-61 (63)
335 KOG0543 FKBP-type peptidyl-pro 46.6 1.8E+02 0.0039 24.6 10.4 95 36-134 258-354 (397)
336 COG3947 Response regulator con 46.3 1.2E+02 0.0027 24.8 7.0 88 67-156 240-328 (361)
337 PF07575 Nucleopor_Nup85: Nup8 46.3 54 0.0012 29.0 5.6 64 69-134 403-466 (566)
338 PF07719 TPR_2: Tetratricopept 46.2 37 0.00081 16.6 4.1 26 108-133 3-28 (34)
339 PF09613 HrpB1_HrpK: Bacterial 45.7 1.2E+02 0.0026 22.2 8.4 55 79-135 18-73 (160)
340 PRK09462 fur ferric uptake reg 45.5 64 0.0014 22.9 5.0 48 40-88 21-69 (148)
341 KOG4567 GTPase-activating prot 45.2 99 0.0021 25.4 6.3 58 91-153 263-320 (370)
342 PF08311 Mad3_BUB1_I: Mad3/BUB 45.2 1E+02 0.0022 21.3 8.9 43 89-131 81-124 (126)
343 PF04124 Dor1: Dor1-like famil 45.1 1.1E+02 0.0025 25.0 7.1 35 40-74 111-145 (338)
344 PF09454 Vps23_core: Vps23 cor 44.5 42 0.00091 20.5 3.4 50 102-152 4-53 (65)
345 KOG1114 Tripeptidyl peptidase 44.5 3E+02 0.0064 26.5 11.1 101 47-156 1159-1282(1304)
346 cd08780 Death_TRADD Death Doma 44.3 90 0.0019 20.4 5.9 53 38-93 35-87 (90)
347 PF11838 ERAP1_C: ERAP1-like C 44.2 1.6E+02 0.0035 23.4 17.7 98 50-150 145-245 (324)
348 KOG2058 Ypt/Rab GTPase activat 44.2 2.1E+02 0.0045 24.6 9.4 72 40-119 291-362 (436)
349 KOG2280 Vacuolar assembly/sort 43.9 1.9E+02 0.0042 26.7 8.4 81 40-131 689-769 (829)
350 PF05944 Phage_term_smal: Phag 43.6 45 0.00098 23.5 3.8 33 69-102 47-79 (132)
351 PLN03025 replication factor C 43.1 1.8E+02 0.0038 23.5 11.2 89 52-143 161-261 (319)
352 COG5210 GTPase-activating prot 43.0 85 0.0018 27.3 6.3 46 93-138 364-409 (496)
353 PF07443 HARP: HepA-related pr 42.4 9.6 0.00021 22.5 0.3 34 120-153 6-39 (55)
354 KOG4648 Uncharacterized conser 42.0 1E+02 0.0023 25.8 6.1 79 43-132 105-184 (536)
355 PF00772 DnaB: DnaB-like helic 42.0 94 0.002 20.0 7.1 17 85-101 54-70 (103)
356 PF10345 Cohesin_load: Cohesin 41.9 2.6E+02 0.0056 25.0 11.7 89 46-134 372-481 (608)
357 PRK09857 putative transposase; 41.6 1.9E+02 0.004 23.3 8.5 64 74-138 209-272 (292)
358 PF14669 Asp_Glu_race_2: Putat 40.8 93 0.002 23.8 5.2 56 39-95 136-205 (233)
359 PF08780 NTase_sub_bind: Nucle 40.3 1E+02 0.0022 21.3 5.3 41 51-92 40-80 (124)
360 PF10475 DUF2450: Protein of u 40.2 1.9E+02 0.0042 23.1 10.9 104 40-156 103-212 (291)
361 PRK09857 putative transposase; 40.1 1.3E+02 0.0027 24.3 6.4 74 109-188 209-282 (292)
362 KOG2066 Vacuolar assembly/sort 40.1 2.8E+02 0.0061 25.8 8.9 104 40-153 361-467 (846)
363 PRK14963 DNA polymerase III su 40.0 2.6E+02 0.0056 24.5 11.4 85 53-140 179-275 (504)
364 PF04124 Dor1: Dor1-like famil 39.9 49 0.0011 27.2 4.1 29 72-100 107-135 (338)
365 PHA02743 Viral ankyrin protein 39.3 1.4E+02 0.0031 21.4 6.2 124 42-177 24-156 (166)
366 PF01475 FUR: Ferric uptake re 39.3 43 0.00092 22.7 3.2 49 75-123 11-59 (120)
367 cd08326 CARD_CASP9 Caspase act 38.9 1.1E+02 0.0023 19.7 6.7 57 92-156 20-76 (84)
368 KOG0276 Vesicle coat complex C 38.7 2.8E+02 0.0061 25.2 8.5 78 38-131 669-746 (794)
369 COG2405 Predicted nucleic acid 38.6 60 0.0013 23.3 3.8 43 108-151 112-154 (157)
370 COG2405 Predicted nucleic acid 38.3 73 0.0016 22.8 4.2 44 72-116 111-154 (157)
371 PF09868 DUF2095: Uncharacteri 38.0 1.4E+02 0.0029 20.7 5.4 25 77-101 67-91 (128)
372 PF12816 Vps8: Golgi CORVET co 37.6 19 0.00041 27.2 1.3 80 30-115 17-96 (196)
373 PF07035 Mic1: Colon cancer-as 37.5 1.7E+02 0.0036 21.6 14.5 112 55-183 14-128 (167)
374 PRK15180 Vi polysaccharide bio 37.4 1.7E+02 0.0036 25.9 6.8 86 45-133 333-418 (831)
375 smart00028 TPR Tetratricopepti 37.3 44 0.00096 14.9 3.1 26 108-133 3-28 (34)
376 PF02847 MA3: MA3 domain; Int 36.7 1E+02 0.0022 20.4 4.8 63 74-138 5-69 (113)
377 PRK14700 recombination factor 36.6 60 0.0013 26.3 4.0 69 112-180 129-200 (300)
378 cd08819 CARD_MDA5_2 Caspase ac 36.3 1.2E+02 0.0027 19.7 6.8 68 53-127 20-87 (88)
379 PRK14962 DNA polymerase III su 36.0 2.9E+02 0.0063 24.0 12.8 85 64-151 191-288 (472)
380 PF13934 ELYS: Nuclear pore co 35.4 2.1E+02 0.0045 22.1 10.7 61 64-132 72-134 (226)
381 PRK14956 DNA polymerase III su 35.3 3.1E+02 0.0067 24.0 11.6 86 55-142 186-284 (484)
382 KOG0548 Molecular co-chaperone 34.8 3.2E+02 0.007 24.1 10.8 103 43-151 366-469 (539)
383 KOG1550 Extracellular protein 34.5 3.3E+02 0.0071 24.1 9.0 128 45-180 259-398 (552)
384 PRK06645 DNA polymerase III su 34.0 3.3E+02 0.0071 24.0 11.6 85 54-141 192-292 (507)
385 COG4003 Uncharacterized protei 33.6 84 0.0018 20.3 3.5 26 76-101 36-61 (98)
386 KOG2297 Predicted translation 33.4 2.8E+02 0.0061 23.0 9.1 61 73-133 323-398 (412)
387 PF15469 Sec5: Exocyst complex 33.2 1.9E+02 0.0042 21.1 10.0 55 37-98 59-113 (182)
388 PF12926 MOZART2: Mitotic-spin 32.3 1.5E+02 0.0032 19.4 8.0 43 92-134 29-71 (88)
389 KOG2280 Vacuolar assembly/sort 32.3 2.1E+02 0.0046 26.5 6.9 102 55-171 668-769 (829)
390 cd04445 DEP_PLEK1 DEP (Disheve 32.1 96 0.0021 20.7 3.7 58 81-138 6-66 (99)
391 PF02607 B12-binding_2: B12 bi 31.9 34 0.00074 21.1 1.6 37 119-155 14-50 (79)
392 PF08870 DUF1832: Domain of un 31.8 85 0.0018 21.4 3.6 90 52-155 6-96 (113)
393 PF11838 ERAP1_C: ERAP1-like C 31.6 2.6E+02 0.0057 22.1 13.5 131 34-171 167-304 (324)
394 PF10155 DUF2363: Uncharacteri 31.5 1.8E+02 0.004 20.3 8.7 43 91-133 83-125 (126)
395 KOG1873 Ubiquitin-specific pro 31.4 1.4E+02 0.003 27.6 5.6 97 70-171 213-315 (877)
396 PF13181 TPR_8: Tetratricopept 31.3 73 0.0016 15.6 4.4 19 79-97 9-27 (34)
397 PRK14952 DNA polymerase III su 30.6 4E+02 0.0087 23.9 10.8 81 57-140 185-279 (584)
398 TIGR02561 HrpB1_HrpK type III 30.3 2.2E+02 0.0047 20.7 7.7 52 83-136 22-74 (153)
399 KOG3364 Membrane protein invol 30.2 2.1E+02 0.0046 20.6 7.6 68 32-100 29-100 (149)
400 smart00544 MA3 Domain in DAP-5 30.1 1.7E+02 0.0036 19.4 10.1 63 36-101 3-67 (113)
401 KOG0159 Cytochrome P450 CYP11/ 29.6 4E+02 0.0086 23.6 10.6 69 84-154 311-385 (519)
402 PF11768 DUF3312: Protein of u 29.3 4.1E+02 0.0089 23.6 9.6 102 74-182 411-514 (545)
403 KOG2063 Vacuolar assembly/sort 29.2 4.1E+02 0.009 25.2 8.5 113 38-152 507-637 (877)
404 PF14840 DNA_pol3_delt_C: Proc 29.2 53 0.0011 22.8 2.3 28 83-110 9-36 (125)
405 PF10963 DUF2765: Protein of u 29.1 1E+02 0.0022 19.9 3.4 31 102-132 12-42 (83)
406 KOG1166 Mitotic checkpoint ser 29.0 3.3E+02 0.0071 26.2 7.9 60 47-107 90-150 (974)
407 KOG1920 IkappaB kinase complex 29.0 2.8E+02 0.006 27.2 7.4 21 77-97 971-991 (1265)
408 cd08789 CARD_IPS-1_RIG-I Caspa 29.0 1.6E+02 0.0035 18.8 5.9 45 107-156 33-77 (84)
409 cd08330 CARD_ASC_NALP1 Caspase 28.9 1.6E+02 0.0034 18.7 5.0 55 89-151 16-70 (82)
410 PRK14135 recX recombination re 28.5 2.9E+02 0.0062 21.6 7.1 62 88-152 89-150 (263)
411 COG2987 HutU Urocanate hydrata 28.4 77 0.0017 27.3 3.5 60 84-156 216-279 (561)
412 PF04090 RNA_pol_I_TF: RNA pol 28.0 2.7E+02 0.0059 21.1 7.2 58 36-95 42-100 (199)
413 PRK12402 replication factor C 27.3 3.2E+02 0.007 21.8 9.0 85 53-140 188-286 (337)
414 PF14518 Haem_oxygenas_2: Iron 27.2 1.8E+02 0.004 18.9 5.8 41 77-121 53-93 (106)
415 COG2256 MGS1 ATPase related to 27.1 4E+02 0.0088 22.8 8.8 76 105-180 245-323 (436)
416 PF07079 DUF1347: Protein of u 27.0 4.3E+02 0.0094 23.1 13.2 110 40-152 51-178 (549)
417 PRK11906 transcriptional regul 26.5 4.3E+02 0.0093 23.0 10.2 85 70-156 337-423 (458)
418 PRK05818 DNA polymerase III su 26.3 3.4E+02 0.0073 21.6 8.2 41 74-114 219-260 (261)
419 PF12862 Apc5: Anaphase-promot 26.2 1.8E+02 0.004 18.6 7.4 71 46-117 9-88 (94)
420 PRK14970 DNA polymerase III su 26.1 3.7E+02 0.008 22.0 11.5 72 64-139 182-267 (367)
421 PF10255 Paf67: RNA polymerase 25.6 4.2E+02 0.0092 22.6 8.2 97 36-132 76-190 (404)
422 TIGR01914 cas_Csa4 CRISPR-asso 25.2 4E+02 0.0087 22.1 7.0 73 75-152 278-352 (354)
423 PF15469 Sec5: Exocyst complex 25.2 2.8E+02 0.006 20.3 7.5 27 37-63 88-114 (182)
424 KOG2223 Uncharacterized conser 25.0 2E+02 0.0044 24.9 5.3 43 58-101 462-504 (586)
425 KOG0890 Protein kinase of the 24.9 6.5E+02 0.014 26.9 9.3 105 45-156 1393-1498(2382)
426 PF05664 DUF810: Protein of un 24.9 5.3E+02 0.012 23.7 8.3 69 65-133 211-290 (677)
427 PF12554 MOZART1: Mitotic-spin 24.8 1.5E+02 0.0032 17.0 3.6 25 2-26 20-44 (48)
428 TIGR03184 DNA_S_dndE DNA sulfu 24.6 1.3E+02 0.0029 20.2 3.5 90 52-154 5-97 (105)
429 PRK09462 fur ferric uptake reg 24.6 2.6E+02 0.0056 19.7 7.0 60 64-124 10-70 (148)
430 KOG1127 TPR repeat-containing 24.3 6.7E+02 0.015 24.5 12.1 43 48-93 505-548 (1238)
431 smart00777 Mad3_BUB1_I Mad3/BU 24.0 2.6E+02 0.0056 19.5 6.2 43 52-95 80-123 (125)
432 TIGR01228 hutU urocanate hydra 23.8 1.1E+02 0.0023 26.8 3.6 57 86-155 209-269 (545)
433 COG2178 Predicted RNA-binding 23.6 3.4E+02 0.0073 20.7 8.3 88 46-134 40-149 (204)
434 KOG1147 Glutamyl-tRNA syntheta 23.4 1.5E+02 0.0032 26.4 4.4 68 58-134 256-331 (712)
435 PF14853 Fis1_TPR_C: Fis1 C-te 23.4 1.6E+02 0.0035 17.0 4.0 21 80-100 10-30 (53)
436 KOG1087 Cytosolic sorting prot 23.3 5E+02 0.011 22.6 10.2 65 40-104 60-138 (470)
437 TIGR02710 CRISPR-associated pr 23.3 3.4E+02 0.0073 22.9 6.4 52 80-131 139-196 (380)
438 PF00566 RabGAP-TBC: Rab-GTPas 23.3 1.3E+02 0.0028 22.1 3.7 96 37-137 92-194 (214)
439 TIGR02710 CRISPR-associated pr 23.3 3.9E+02 0.0085 22.6 6.7 54 41-95 136-195 (380)
440 KOG0159 Cytochrome P450 CYP11/ 23.1 5.3E+02 0.011 22.8 12.0 53 119-171 311-363 (519)
441 PF09477 Type_III_YscG: Bacter 23.1 2.6E+02 0.0056 19.2 6.8 85 84-180 19-103 (116)
442 PRK05414 urocanate hydratase; 23.0 1.1E+02 0.0024 26.9 3.5 58 86-156 218-279 (556)
443 KOG0550 Molecular chaperone (D 22.9 5E+02 0.011 22.5 7.5 84 45-132 259-347 (486)
444 smart00164 TBC Domain in Tre-2 22.6 3E+02 0.0064 20.1 5.6 101 66-177 90-198 (199)
445 PF07980 SusD: SusD family; I 22.5 2.8E+02 0.006 21.1 5.6 32 107-138 134-166 (266)
446 TIGR02397 dnaX_nterm DNA polym 22.5 4.2E+02 0.0091 21.4 12.7 81 56-139 183-276 (355)
447 PRK14960 DNA polymerase III su 22.1 6.3E+02 0.014 23.3 11.6 86 52-140 180-278 (702)
448 PHA02875 ankyrin repeat protei 22.1 2.3E+02 0.005 23.5 5.4 113 40-170 37-156 (413)
449 PF14162 YozD: YozD-like prote 21.9 1.8E+02 0.0039 16.9 3.7 17 125-141 14-30 (57)
450 COG0457 NrfG FOG: TPR repeat [ 21.8 2.8E+02 0.006 19.1 13.1 92 40-132 64-156 (291)
451 PF07840 FadR_C: FadR C-termin 21.8 3.3E+02 0.0072 20.0 5.7 120 4-132 7-144 (164)
452 KOG2908 26S proteasome regulat 21.5 4.9E+02 0.011 21.8 10.6 104 22-125 61-176 (380)
453 KOG2063 Vacuolar assembly/sort 21.5 3.1E+02 0.0067 26.0 6.2 29 72-100 505-533 (877)
454 PRK14953 DNA polymerase III su 21.4 5.5E+02 0.012 22.4 10.7 74 64-140 193-279 (486)
455 PF04097 Nic96: Nup93/Nic96; 21.3 3.7E+02 0.0081 24.2 6.7 71 76-147 116-196 (613)
456 KOG2114 Vacuolar assembly/sort 21.3 7.1E+02 0.015 23.6 10.5 55 41-97 403-457 (933)
457 PF09797 NatB_MDM20: N-acetylt 21.2 2.1E+02 0.0045 23.6 4.8 60 50-111 198-257 (365)
458 TIGR03236 dnd_assoc_1 dnd syst 21.0 2.6E+02 0.0056 23.4 5.2 55 34-89 294-349 (363)
459 PRK14956 DNA polymerase III su 20.8 5.8E+02 0.013 22.4 9.6 38 70-107 247-284 (484)
460 PF14044 NETI: NETI protein 20.7 83 0.0018 18.7 1.7 17 124-140 9-25 (57)
461 PF04762 IKI3: IKI3 family; I 20.5 7.6E+02 0.017 23.7 10.2 30 106-135 812-843 (928)
462 KOG1550 Extracellular protein 20.5 6E+02 0.013 22.5 10.3 84 50-136 308-394 (552)
463 PF11491 DUF3213: Protein of u 20.4 42 0.00092 21.6 0.4 20 137-156 20-39 (88)
464 PF08542 Rep_fac_C: Replicatio 20.3 2.3E+02 0.0051 17.7 6.2 49 69-119 3-51 (89)
465 COG2812 DnaX DNA polymerase II 20.2 6.1E+02 0.013 22.4 10.2 100 40-142 165-281 (515)
466 cd08332 CARD_CASP2 Caspase act 20.2 2.6E+02 0.0056 18.1 7.7 30 120-153 48-77 (90)
467 COG5210 GTPase-activating prot 20.0 3E+02 0.0066 23.9 5.8 57 55-112 362-418 (496)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.94 E-value=5.6e-26 Score=206.07 Aligned_cols=141 Identities=12% Similarity=0.235 Sum_probs=107.6
Q ss_pred chhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHH
Q 029406 34 LKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113 (194)
Q Consensus 34 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li 113 (194)
....|+.+|.+|++.|++++|.++|++|. ..|+.||..+|++||.+|++.|++++|.++|.+|.+.|+.||..+|++||
T Consensus 613 ~~~tynsLI~ay~k~G~~deAl~lf~eM~-~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI 691 (1060)
T PLN03218 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMK-KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691 (1060)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34556777777777777777777777777 67777777777777777777777777777777777777777777777777
Q ss_pred HHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCchh
Q 029406 114 RAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180 (194)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~ 180 (194)
.+|++.|++++|..+|++|.+.|+.||..+|++||.+|++.|+ .++|.++|++|...|..||
T Consensus 692 ~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~-----~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 692 GACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ-----LPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHcCCCCC
Confidence 7777777777777777777777777777777777777777777 7777777777777666665
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.94 E-value=1.3e-25 Score=203.66 Aligned_cols=139 Identities=15% Similarity=0.223 Sum_probs=85.6
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..|+.+|.+|++.|+++.|.++|++|. ..|+.||..+|++||.+|++.|++++|.++|.+|...|+.||..|||+||.+
T Consensus 473 ~tynsLI~~y~k~G~vd~A~~vf~eM~-~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a 551 (1060)
T PLN03218 473 KLYTTLISTCAKSGKVDAMFEVFHEMV-NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA 551 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 445566666666666666666666666 4566666666666666666666666666666666666666666666666666
Q ss_pred HhcCCChHHHHHHHHHhHh--CCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCchh
Q 029406 116 FSDSGLPSEAMFIYNEMRS--SPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~--~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~ 180 (194)
|++.|++++|.++|++|.. .|+.||..||++||.+|++.|+ .+.|.++|+.|...+++++
T Consensus 552 ~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~-----ldeA~elf~~M~e~gi~p~ 613 (1060)
T PLN03218 552 CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ-----VDRAKEVYQMIHEYNIKGT 613 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHcCCCCC
Confidence 6666666666666666644 3556666666666666666666 5666666666655554433
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.91 E-value=6.3e-24 Score=187.89 Aligned_cols=126 Identities=13% Similarity=0.208 Sum_probs=80.7
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
.++++|++|++.|++++|.++|+.|.+ ||..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+++|.+|
T Consensus 362 ~~~~Li~~y~k~G~~~~A~~vf~~m~~-----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 436 (697)
T PLN03081 362 ANTALVDLYSKWGRMEDARNVFDRMPR-----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436 (697)
T ss_pred ehHHHHHHHHHCCCHHHHHHHHHhCCC-----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 355666666666666666666666641 566666666666666666666666666666666666666666666666
Q ss_pred hcCCChHHHHHHHHHhHh-CCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 117 SDSGLPSEAMFIYNEMRS-SPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~-~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
++.|.+++|.++|+.|.+ .|+.|+..+|++++++|++.|+ .++|.+++++|
T Consensus 437 ~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~-----~~eA~~~~~~~ 488 (697)
T PLN03081 437 RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL-----LDEAYAMIRRA 488 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC-----HHHHHHHHHHC
Confidence 666666666666666654 3666666666666666666666 66666666655
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.91 E-value=2.5e-23 Score=184.05 Aligned_cols=125 Identities=16% Similarity=0.153 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
++++|++|++.|++++|.++|+.|.. +|+.+||+||.+|++.|++++|+++|.+|.+.|+.||..||+++|.+|+
T Consensus 262 ~n~Li~~y~k~g~~~~A~~vf~~m~~-----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~ 336 (697)
T PLN03081 262 SCALIDMYSKCGDIEDARCVFDGMPE-----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336 (697)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCC-----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34555555555555555555555531 4555555555555555555555555555555555555555555555555
Q ss_pred cCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
+.|.++.|.+++..|.+.|+.||..+|++||++|++.|+ ++.|.++|+.|
T Consensus 337 ~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~-----~~~A~~vf~~m 386 (697)
T PLN03081 337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR-----MEDARNVFDRM 386 (697)
T ss_pred hccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCC-----HHHHHHHHHhC
Confidence 555555555555555555555555555555555555544 44444444444
No 5
>PLN03077 Protein ECB2; Provisional
Probab=99.89 E-value=3.8e-22 Score=180.16 Aligned_cols=127 Identities=12% Similarity=0.083 Sum_probs=84.1
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
.++++|.+|++.|+++.|..+|+.|. .||..+||+||.+|++.|++++|+++|.+|.+.|+.||..||+++|.+|
T Consensus 224 ~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~ 298 (857)
T PLN03077 224 VVNALITMYVKCGDVVSARLVFDRMP-----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC 298 (857)
T ss_pred hHhHHHHHHhcCCCHHHHHHHHhcCC-----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Confidence 45566666666666666666666664 2566666666666666666666666666666666666666666666666
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccc
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
++.|+.+.|.+++..|.+.|+.||..+||+||.+|++.|+ ++.|.++|+.|.
T Consensus 299 ~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~-----~~~A~~vf~~m~ 350 (857)
T PLN03077 299 ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS-----WGEAEKVFSRME 350 (857)
T ss_pred HhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCC-----HHHHHHHHhhCC
Confidence 6666666666666666666666666666666666666666 666666666554
No 6
>PLN03077 Protein ECB2; Provisional
Probab=99.89 E-value=3.7e-22 Score=180.21 Aligned_cols=133 Identities=12% Similarity=0.062 Sum_probs=114.7
Q ss_pred hchhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHH
Q 029406 33 LLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDI 112 (194)
Q Consensus 33 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~l 112 (194)
+....++++|.+|++.|++++|.++|+.|. .||..+||+||.+|++.|++++|+++|.+|.+.|+.||..||+++
T Consensus 321 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~l 395 (857)
T PLN03077 321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASV 395 (857)
T ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHH
Confidence 334567788888999999999999998885 278888999999999999999999999999888899999999999
Q ss_pred HHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccccc
Q 029406 113 IRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVY 175 (194)
Q Consensus 113 i~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~ 175 (194)
|.+|++.|+++.|.++++.|.+.|+.|+..+|++||++|++.|+ .+.|.++|+.|...
T Consensus 396 l~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~-----~~~A~~vf~~m~~~ 453 (857)
T PLN03077 396 LSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC-----IDKALEVFHNIPEK 453 (857)
T ss_pred HHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCC-----HHHHHHHHHhCCCC
Confidence 99999999999999999999888888998999999999998888 88888888888653
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.67 E-value=2.5e-16 Score=93.03 Aligned_cols=50 Identities=20% Similarity=0.408 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhc
Q 029406 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118 (194)
Q Consensus 69 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 118 (194)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+++|++|||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 55566666666666666666666666666666666666666666666553
No 8
>PF13041 PPR_2: PPR repeat family
Probab=99.66 E-value=2.8e-16 Score=92.82 Aligned_cols=50 Identities=24% Similarity=0.484 Sum_probs=49.0
Q ss_pred CCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCC
Q 029406 104 FDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIP 153 (194)
Q Consensus 104 p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~ 153 (194)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+++|++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999985
No 9
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=2.1e-10 Score=93.78 Aligned_cols=130 Identities=12% Similarity=0.128 Sum_probs=109.8
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
.+..+|.++|+-...+.|.++|++-+ ....+.+..+||.+|.+-.-. ...++..+|....+.||..|||+++.+.
T Consensus 209 t~s~mI~Gl~K~~~~ERA~~L~kE~~-~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~ 283 (625)
T KOG4422|consen 209 TVSIMIAGLCKFSSLERARELYKEHR-AAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCA 283 (625)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHH-HhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHH
Confidence 45689999999999999999999999 788899999999999987643 3488999999999999999999999999
Q ss_pred hcCCChHHH----HHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccc
Q 029406 117 SDSGLPSEA----MFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 117 ~~~g~~~~a----~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~ 171 (194)
++.|+++.| .+++.+|++-|+.|...+|..+|..+++.++....+..-..+|.+.
T Consensus 284 akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ 342 (625)
T KOG4422|consen 284 AKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNS 342 (625)
T ss_pred HHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHh
Confidence 999988754 6788899999999999999999999999888423233333344433
No 10
>PF12854 PPR_1: PPR repeat
Probab=99.18 E-value=3.1e-11 Score=65.08 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=16.8
Q ss_pred CCCCCHHhHHHHHHHHhcCCChHHHHHHHHHh
Q 029406 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEM 132 (194)
Q Consensus 101 g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M 132 (194)
|+.||..|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 11
>PF12854 PPR_1: PPR repeat
Probab=99.15 E-value=5.7e-11 Score=64.04 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=32.3
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 029406 65 IWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLK 98 (194)
Q Consensus 65 ~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 98 (194)
.|+.||..|||+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4899999999999999999999999999999984
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.93 E-value=3.5e-08 Score=81.56 Aligned_cols=128 Identities=11% Similarity=0.004 Sum_probs=96.7
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
.+..+...+.+.|++++|.++|+.+. ..+......+++.+..+|++.|++++|...+.++.+. .|+...+..+...|
T Consensus 216 ~~~~la~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~ 292 (389)
T PRK11788 216 ASILLGDLALAQGDYAAAIEALERVE-EQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLL 292 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH-HHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence 34456677888899999999999887 3322222456788888999999999999998888765 46667778888889
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCC---CCchHHhHHHHHhhhcccccc
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIP---YPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~---~g~~~~~~~~~a~~~~~~m~~ 174 (194)
.+.|++++|..+|+++.+. .|+..+++.++..+.. .|+ ...+..+++.|..
T Consensus 293 ~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~-----~~~a~~~~~~~~~ 346 (389)
T PRK11788 293 EEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGR-----AKESLLLLRDLVG 346 (389)
T ss_pred HHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCcc-----chhHHHHHHHHHH
Confidence 9999999999999887765 5888888888877664 446 6666777776653
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.89 E-value=1.2e-07 Score=78.30 Aligned_cols=132 Identities=7% Similarity=-0.008 Sum_probs=107.4
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhc
Q 029406 39 VSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118 (194)
Q Consensus 39 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 118 (194)
..+...+.+.|++++|...|+++.+ . .+.+...+..+...|.+.|++++|.++|.++...+-.....+++.+..+|++
T Consensus 184 ~~la~~~~~~~~~~~A~~~~~~al~-~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 261 (389)
T PRK11788 184 CELAQQALARGDLDAARALLKKALA-A-DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA 261 (389)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHh-H-CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence 3455667789999999999999973 2 2334668888889999999999999999999876422234678999999999
Q ss_pred CCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCch
Q 029406 119 SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPE 179 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~ 179 (194)
.|++++|...++.+.+. .|+...+..+...+.+.|+ .+.|..+++.+....|..
T Consensus 262 ~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~-----~~~A~~~l~~~l~~~P~~ 315 (389)
T PRK11788 262 LGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEG-----PEAAQALLREQLRRHPSL 315 (389)
T ss_pred cCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCC-----HHHHHHHHHHHHHhCcCH
Confidence 99999999999999776 4777778899999999999 889999988776554433
No 14
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=6.5e-08 Score=79.47 Aligned_cols=106 Identities=18% Similarity=0.205 Sum_probs=93.1
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHH
Q 029406 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILK 149 (194)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~ 149 (194)
+..||.+||.+.|+--..++|..++.+-.....+.+..+||.+|.+-+-. ...+++.+|....++||..|||+++.
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 56799999999999999999999999999988999999999999875533 33788999999999999999999999
Q ss_pred hhCCCCchHHhHHHHHhhhcccccccCCchh
Q 029406 150 GLIPYPEFREKVKDDFLELFPDMIVYDPPED 180 (194)
Q Consensus 150 ~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~ 180 (194)
+..+.|++ +.....|.+++.+|+..|+.|-
T Consensus 282 c~akfg~F-~~ar~aalqil~EmKeiGVePs 311 (625)
T KOG4422|consen 282 CAAKFGKF-EDARKAALQILGEMKEIGVEPS 311 (625)
T ss_pred HHHHhcch-HHHHHHHHHHHHHHHHhCCCcc
Confidence 99999984 3345678899999999988775
No 15
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.78 E-value=9.9e-09 Score=55.06 Aligned_cols=33 Identities=24% Similarity=0.426 Sum_probs=17.7
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCC
Q 029406 108 TFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPI 140 (194)
Q Consensus 108 ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~ 140 (194)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
No 16
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.74 E-value=2.2e-08 Score=53.65 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCH
Q 029406 72 FFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ 106 (194)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 106 (194)
.+||+||.+|++.|++++|.++|.+|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999983
No 17
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.69 E-value=3.2e-08 Score=52.91 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Q 029406 73 FYRDMLMMLARNKKVVEAKQVWEDLKREEVLF 104 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p 104 (194)
+||++|.+|++.|+++.|.++|+.|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 18
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.66 E-value=3.6e-08 Score=52.69 Aligned_cols=33 Identities=30% Similarity=0.696 Sum_probs=31.7
Q ss_pred HhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCC
Q 029406 107 HTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP 139 (194)
Q Consensus 107 ~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p 139 (194)
.+||++|.+|++.|+++.|..+|++|++.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999988
No 19
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.59 E-value=8e-06 Score=73.34 Aligned_cols=130 Identities=5% Similarity=-0.104 Sum_probs=78.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+..+...+.+.|++++|..+++.+. ...+.+...|..+...|.+.|++++|...|.++.+.. +.+...+..+..+|.
T Consensus 570 ~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 646 (899)
T TIGR02917 570 ALALAQYYLGKGQLKKALAILNEAA--DAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYA 646 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3455666666777777777777765 2334456666777777777777777777777665543 224555666666666
Q ss_pred cCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccC
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
+.|++++|..+|+.+.+. .+.+..++..+...+...|+ .+.|..+++.+....
T Consensus 647 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~~~~~~ 699 (899)
T TIGR02917 647 VMKNYAKAITSLKRALEL-KPDNTEAQIGLAQLLLAAKR-----TESAKKIAKSLQKQH 699 (899)
T ss_pred HcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhhC
Confidence 666666666666666543 13335555666666666666 555555555554433
No 20
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.51 E-value=2.7e-06 Score=64.46 Aligned_cols=91 Identities=10% Similarity=0.066 Sum_probs=67.7
Q ss_pred CCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCC----------------ChHHH
Q 029406 67 YRPDMFFYRDMLMMLARN-----KKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG----------------LPSEA 125 (194)
Q Consensus 67 ~~p~~~~~~~li~~~~~~-----g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g----------------~~~~a 125 (194)
...|..+|..+|+.|.+. |+++-...-+..|.+.|+.-|..+|+.||+.+=+.. ..+-|
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~ 122 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECA 122 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHH
Confidence 445667777777777654 566666666777777777777777777777766532 34567
Q ss_pred HHHHHHhHhCCCCCChhhHHHHHHhhCCCCch
Q 029406 126 MFIYNEMRSSPATPISLPFRVILKGLIPYPEF 157 (194)
Q Consensus 126 ~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~ 157 (194)
.+++++|..+|+.||..|+..|++.+++.+..
T Consensus 123 i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 123 IDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 88999999999999999999999999888875
No 21
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.51 E-value=8.3e-06 Score=73.25 Aligned_cols=132 Identities=11% Similarity=0.052 Sum_probs=98.4
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
.+..+...+...|++++|..+++.+.+ . .+++...+..+-..+.+.|++++|...|.++...+ |+..++..+..+|
T Consensus 671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 746 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQK-Q-HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRAL 746 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh-h-CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHH
Confidence 345667777788888888888888862 2 34566777778888888888888888888877653 4446777788888
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCc
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
.+.|+.++|...++.+.+. .+.+...+..+...|...|+ .+.|.++|+.+....|.
T Consensus 747 ~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~~~~~~p~ 802 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKD-----YDKAIKHYRTVVKKAPD 802 (899)
T ss_pred HHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcC-----HHHHHHHHHHHHHhCCC
Confidence 8888888888888887665 34567778888888888888 78888888777655543
No 22
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.49 E-value=1.6e-06 Score=58.89 Aligned_cols=75 Identities=13% Similarity=0.320 Sum_probs=34.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhcCC-CCCHHhHHHHHHHHhcCC--------ChHHHHHHHHHhHhCCCCCChhhHHHHH
Q 029406 78 LMMLARNKKVVEAKQVWEDLKREEV-LFDQHTFGDIIRAFSDSG--------LPSEAMFIYNEMRSSPATPISLPFRVIL 148 (194)
Q Consensus 78 i~~~~~~g~~~~a~~l~~~m~~~g~-~p~~~ty~~li~~~~~~g--------~~~~a~~l~~~M~~~g~~p~~~ty~~ll 148 (194)
|.-|...+++...-.+|..+++.|+ .|+..+|+.++.+-++.. ..-..+.+|++|..++++|+..||+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3333333444444444444444444 444444444444444332 1223344555555555555555555555
Q ss_pred HhhC
Q 029406 149 KGLI 152 (194)
Q Consensus 149 ~~~~ 152 (194)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5543
No 23
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.49 E-value=1.6e-07 Score=48.95 Aligned_cols=29 Identities=28% Similarity=0.548 Sum_probs=15.9
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHhCC
Q 029406 108 TFGDIIRAFSDSGLPSEAMFIYNEMRSSP 136 (194)
Q Consensus 108 ty~~li~~~~~~g~~~~a~~l~~~M~~~g 136 (194)
|||++|++|++.|++++|.++|++|++.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 24
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.44 E-value=2.4e-07 Score=48.26 Aligned_cols=31 Identities=13% Similarity=0.360 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Q 029406 72 FFYRDMLMMLARNKKVVEAKQVWEDLKREEV 102 (194)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 102 (194)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998874
No 25
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.43 E-value=2.9e-06 Score=70.99 Aligned_cols=123 Identities=11% Similarity=-0.000 Sum_probs=103.3
Q ss_pred hhchhhHHHHHHHHHhcCCHhHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHH
Q 029406 32 RLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEI-WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFG 110 (194)
Q Consensus 32 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~ 110 (194)
+.+.-++-.+++.+....+++.+..++-..+.+. ....-..|..++|+.|.+.|..++++.++..=...|+-||..|||
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 4455677788888888899999999988887321 222233445699999999999999999999999999999999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCC
Q 029406 111 DIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPY 154 (194)
Q Consensus 111 ~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~ 154 (194)
.||..+.+.|++..|..+...|...+...+..|+..-+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999998888888888888888777654
No 26
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.41 E-value=7.3e-06 Score=55.77 Aligned_cols=80 Identities=11% Similarity=0.251 Sum_probs=69.8
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHhcCCCCCHHhH
Q 029406 39 VSVLAEFQRQDQVFLCMKLYDVVRKEIWY-RPDMFFYRDMLMMLARNKK--------VVEAKQVWEDLKREEVLFDQHTF 109 (194)
Q Consensus 39 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~--------~~~a~~l~~~m~~~g~~p~~~ty 109 (194)
..-|..|...++++....+|+.++ +.|+ .|++.+|+.++.+-++... .-.++.++..|...+++|+..||
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslk-RN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLK-RNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHH-hcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 355666777799999999999999 8999 9999999999999988542 45678899999999999999999
Q ss_pred HHHHHHHhcC
Q 029406 110 GDIIRAFSDS 119 (194)
Q Consensus 110 ~~li~~~~~~ 119 (194)
+.++..+.+.
T Consensus 108 nivl~~Llkg 117 (120)
T PF08579_consen 108 NIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 27
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.23 E-value=8.1e-06 Score=64.83 Aligned_cols=131 Identities=11% Similarity=0.036 Sum_probs=67.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC-CHHhHHHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF-DQHTFGDIIRAF 116 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~ 116 (194)
+...+..+...++++.+..+++........+++...|..+-..+.+.|+.++|+.++++..+. .| |....+.++..+
T Consensus 113 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~l 190 (280)
T PF13429_consen 113 LLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLL 190 (280)
T ss_dssp -----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 344555555666666666666665422333445556666666666666666666666666554 23 355566666666
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccC
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
...|+.+++..++....... +.|...+..+..++...|+ .+.|..+++......
T Consensus 191 i~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~-----~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 191 IDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGR-----YEEALEYLEKALKLN 244 (280)
T ss_dssp CTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT------HHHHHHHHHHHHHHS
T ss_pred HHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccc-----ccccccccccccccc
Confidence 66666666666555554432 3344455555566666666 556666655554433
No 28
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.20 E-value=0.00044 Score=51.93 Aligned_cols=130 Identities=7% Similarity=-0.049 Sum_probs=94.6
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CCCHHhHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEV-LFDQHTFGDIIRA 115 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~~~ty~~li~~ 115 (194)
.+..+...+...|+++.|.+.|+...+ . .+.+...+..+-..+...|++++|...|.+...... ......+..+-.+
T Consensus 67 ~~~~la~~~~~~~~~~~A~~~~~~al~-~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (234)
T TIGR02521 67 AYLALALYYQQLGELEKAEDSFRRALT-L-NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLC 144 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh-h-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 444566677778999999999888862 2 233566777778888888999999999988876432 2344567777888
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
|...|+++.|...|....... +.+...+..+...+...|+ .+.|...++....
T Consensus 145 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~-----~~~A~~~~~~~~~ 197 (234)
T TIGR02521 145 ALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQ-----YKDARAYLERYQQ 197 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCC-----HHHHHHHHHHHHH
Confidence 888899999999888876542 3345677777788888888 7777777666543
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.17 E-value=1.2e-05 Score=63.94 Aligned_cols=121 Identities=15% Similarity=0.095 Sum_probs=57.9
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhc
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 118 (194)
..-..+.+.|++++|...|+...+ ..| |....+.++..+...|+.+++..++....... +.|...+..+-.+|..
T Consensus 151 ~~a~~~~~~G~~~~A~~~~~~al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~ 226 (280)
T PF13429_consen 151 ALAEIYEQLGDPDKALRDYRKALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQ 226 (280)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcc
Confidence 344444556666666666666642 224 35555566666666666666666555554443 3344455566666666
Q ss_pred CCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcc
Q 029406 119 SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFP 170 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~ 170 (194)
.|+.++|..+|+..... .+.|..+...+...+...|+ .+.|.++..
T Consensus 227 lg~~~~Al~~~~~~~~~-~p~d~~~~~~~a~~l~~~g~-----~~~A~~~~~ 272 (280)
T PF13429_consen 227 LGRYEEALEYLEKALKL-NPDDPLWLLAYADALEQAGR-----KDEALRLRR 272 (280)
T ss_dssp HT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccc-cccccccccccccccccccc-----ccccccccc
Confidence 66666666666665443 13355555556666666666 555555543
No 30
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.15 E-value=0.00017 Score=54.23 Aligned_cols=134 Identities=10% Similarity=0.063 Sum_probs=105.4
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+..+...+...|+++.|...|+...+ . .+.+...+..+-..|...|++++|...+.+..+.. +.+...+..+...
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~-~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALE-H-DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH-h-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3455677788899999999999999873 2 23457788889999999999999999999888764 3356788889999
Q ss_pred HhcCCChHHHHHHHHHhHhCCC-CCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPA-TPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~-~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
|...|++++|...|+....... ......+..+...+...|+ .+.|...+.......|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~ 166 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD-----FDKAEKYLTRALQIDP 166 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhCc
Confidence 9999999999999999876532 2344567777788888999 8888888776654443
No 31
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.08 E-value=2.2e-05 Score=65.80 Aligned_cols=97 Identities=14% Similarity=0.073 Sum_probs=82.7
Q ss_pred HHHHHHHH-hhhhchhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 029406 22 FDRFIKSH-VSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100 (194)
Q Consensus 22 ~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 100 (194)
++++-.+. +..+.+...-++|..|.+.|..+.++.++..=. +.|+-||.++||.||+.+.+.|++..|.++...|...
T Consensus 89 L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~-~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQ 167 (429)
T PF10037_consen 89 LYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRL-QYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQ 167 (429)
T ss_pred HHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChh-hcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 44444333 233445555699999999999999999999988 8999999999999999999999999999999999998
Q ss_pred CCCCCHHhHHHHHHHHhcC
Q 029406 101 EVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 101 g~~p~~~ty~~li~~~~~~ 119 (194)
+...+..|+...+.+|.+.
T Consensus 168 e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 168 EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hccCCchHHHHHHHHHHHh
Confidence 8888888988888888877
No 32
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.06 E-value=3e-06 Score=75.08 Aligned_cols=88 Identities=8% Similarity=0.178 Sum_probs=81.3
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 56 KLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 56 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
.++-.+. ..|+.|+-+||.++|.-||..|+.+.|- +|.-|+-.....+...|+.++.+...+++.+.+.
T Consensus 11 nfla~~e-~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHE-ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHH-HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 4566777 7999999999999999999999999999 9999999999999999999999999999988766
Q ss_pred CCCCChhhHHHHHHhhCCCCc
Q 029406 136 PATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 136 g~~p~~~ty~~ll~~~~~~g~ 156 (194)
.|-+.||+.|+.+|...||
T Consensus 80 --ep~aDtyt~Ll~ayr~hGD 98 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGD 98 (1088)
T ss_pred --CCchhHHHHHHHHHHhccc
Confidence 7889999999999999999
No 33
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.00 E-value=0.00019 Score=64.00 Aligned_cols=98 Identities=14% Similarity=0.100 Sum_probs=80.9
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHh
Q 029406 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 55 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~ 134 (194)
.++.+..++-.+ .|+..+|..+++.-..+|+++-|..+..+|++.|++.+..-|-.||-+ .++...+..++..|.+
T Consensus 189 ekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe 264 (1088)
T KOG4318|consen 189 EKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQE 264 (1088)
T ss_pred HHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHH
Confidence 334444442223 689999999999999999999999999999999999999988888877 7888888889999999
Q ss_pred CCCCCChhhHHHHHHhhCCCCc
Q 029406 135 SPATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 135 ~g~~p~~~ty~~ll~~~~~~g~ 156 (194)
.|+.|++.||.-.+-.+.++|.
T Consensus 265 ~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 265 KGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hcCCCCcchhHHHHHhhhcchh
Confidence 9999999999888877777655
No 34
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.96 E-value=0.00012 Score=55.57 Aligned_cols=87 Identities=17% Similarity=0.267 Sum_probs=74.7
Q ss_pred hhhHHHHHHHHHh-----cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCC----------------HHHHHHH
Q 029406 35 KSDLVSVLAEFQR-----QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKK----------------VVEAKQV 93 (194)
Q Consensus 35 ~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~----------------~~~a~~l 93 (194)
...+..+|+.|.+ .|.++=....+..|. +.|+.-|..+|+.||+.+=+... -+-|++|
T Consensus 47 K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~-efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 47 KATFLEAVDIFKQRDVRRRGHVEFIYAALKKMD-EFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred HHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHH-HcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 4567788888875 477777888899999 89999999999999999987432 3668899
Q ss_pred HHHHHhcCCCCCHHhHHHHHHHHhcCCCh
Q 029406 94 WEDLKREEVLFDQHTFGDIIRAFSDSGLP 122 (194)
Q Consensus 94 ~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 122 (194)
+++|...|+.||..|+..|++.+++.+..
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 99999999999999999999999998754
No 35
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.84 E-value=0.0032 Score=55.60 Aligned_cols=130 Identities=9% Similarity=-0.020 Sum_probs=100.8
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
.+..+-..+...|++++|...|+.... . -+-+...|..+-..|...|++++|+..|.+..... +.+...+..+-..|
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~-~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~ 443 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALK-L-NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHH
Confidence 345566667788999999999998873 2 23357788888889999999999999999887653 33567788888899
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccccc
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVY 175 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~ 175 (194)
.+.|++++|...|+..... .+-+...|+.+-..+...|+ .++|.+.|+.....
T Consensus 444 ~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~-----~~~A~~~~~~Al~l 496 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNK-----FDEAIEKFDTAIEL 496 (615)
T ss_pred HHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccC-----HHHHHHHHHHHHhc
Confidence 9999999999999988764 23446788888888888998 77777776665443
No 36
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.79 E-value=0.001 Score=55.53 Aligned_cols=122 Identities=11% Similarity=0.039 Sum_probs=99.6
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 119 (194)
.++..+...++++.|..+|+++.+ .. |+. ...|.+.+...++-.+|.++..+.... .+-|......-...|.+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~-~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRE-RD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHh-cC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhc
Confidence 577777778999999999999984 33 554 445888888889999999999988854 234677788888889999
Q ss_pred CChHHHHHHHHHhHhCCCCCC-hhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 120 GLPSEAMFIYNEMRSSPATPI-SLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 120 g~~~~a~~l~~~M~~~g~~p~-~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
++++.|..+.+++.+. .|+ ..+|..|..+|.+.|+ .+.|.-.++.+..
T Consensus 248 ~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d-----~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGD-----FENALLALNSCPM 296 (395)
T ss_pred CCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCC-----HHHHHHHHhcCcC
Confidence 9999999999998765 555 5699999999999999 8888877776643
No 37
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.79 E-value=0.0031 Score=56.24 Aligned_cols=126 Identities=7% Similarity=-0.009 Sum_probs=73.3
Q ss_pred HHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHH----HHHHHHHHHhcCCCCCHHhHHHHHHHHhc
Q 029406 43 AEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVE----AKQVWEDLKREEVLFDQHTFGDIIRAFSD 118 (194)
Q Consensus 43 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~----a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 118 (194)
..+...|++++|...|+... .. .+.+...+..+=..|.+.|++++ |...|++..... +.+...+..+...+.+
T Consensus 220 ~~l~~~g~~~eA~~~~~~al-~~-~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~ 296 (656)
T PRK15174 220 DTLCAVGKYQEAIQTGESAL-AR-GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIR 296 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHH-hc-CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 34455566666666666655 21 12234555555566666666654 566666665432 2245567777777777
Q ss_pred CCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 119 SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
.|++++|...++...... +-+...+..+...+.+.|+ .+.|...++.+...+|
T Consensus 297 ~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~-----~~eA~~~l~~al~~~P 349 (656)
T PRK15174 297 TGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQ-----YTAASDEFVQLAREKG 349 (656)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHhCc
Confidence 777777777777765541 2234455556666777777 6677777666554433
No 38
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.76 E-value=0.0036 Score=55.83 Aligned_cols=51 Identities=12% Similarity=-0.019 Sum_probs=22.2
Q ss_pred HHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 029406 44 EFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDL 97 (194)
Q Consensus 44 ~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m 97 (194)
.+...|+++.|...|+.... +.| +...+..+...+...|++++|...+..+
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~---l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWL---AFSGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 33444444444444444431 112 2334444444444444444444444444
No 39
>PRK12370 invasion protein regulator; Provisional
Probab=97.72 E-value=0.0045 Score=54.09 Aligned_cols=122 Identities=10% Similarity=-0.096 Sum_probs=80.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC-HHhHHHHHHHHh
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFD-QHTFGDIIRAFS 117 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~ 117 (194)
.+-..+...|++++|...|+...+ ..|+ ...+..+-..|...|++++|...+++..+.. |+ ...+..+...+.
T Consensus 343 ~lg~~~~~~g~~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~ 417 (553)
T PRK12370 343 LLGLINTIHSEYIVGSLLFKQANL---LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITY 417 (553)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHH
Confidence 333445567888888888888863 3344 5566677777888888888888888877653 32 222333444566
Q ss_pred cCCChHHHHHHHHHhHhCCCCCC-hhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPI-SLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~-~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
..|++++|...+++..... .|+ ...+..+-..+...|+ .++|...+..+
T Consensus 418 ~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~-----~~eA~~~~~~~ 467 (553)
T PRK12370 418 YHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGK-----HELARKLTKEI 467 (553)
T ss_pred hccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCC-----HHHHHHHHHHh
Confidence 6788888888888876542 343 3345556666777888 77777776654
No 40
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.67 E-value=0.00054 Score=54.97 Aligned_cols=134 Identities=10% Similarity=0.068 Sum_probs=88.9
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH----hCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLA----RNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+..+.+.++++.|.+.++.|+ +. -.|.. .+.+..+|. -...+.+|..+|+++.. .+.++..+.|.+..+
T Consensus 136 l~Vqi~L~~~R~dlA~k~l~~~~-~~--~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~-~~~~t~~~lng~A~~ 210 (290)
T PF04733_consen 136 LAVQILLKMNRPDLAEKELKNMQ-QI--DEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSD-KFGSTPKLLNGLAVC 210 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH-CC--SCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHC-CS--SHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH-hc--CCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHh-ccCCCHHHHHHHHHH
Confidence 45788889999999999999997 33 34433 333444433 34568999999999855 467788899999999
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCchhhhh
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPEDLFE 183 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 183 (194)
+...|++++|..++.+..+.. +-+..|...++-.....|+. .+.+.+.+.+++...|....+.
T Consensus 211 ~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~----~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 211 HLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKP----TEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp HHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-T----CHHHHHHHHHCHHHTTTSHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCC----hhHHHHHHHHHHHhCCCChHHH
Confidence 999999999999988865542 22445555566655556661 2556677777766665555444
No 41
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.59 E-value=0.0047 Score=43.10 Aligned_cols=106 Identities=9% Similarity=0.057 Sum_probs=80.7
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
.+..+...+...|+++.|...|+... .. .+.+...|..+-..|.+.|++++|...|++....+ +.+...|..+-..|
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~-~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLA-AY-DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHH-Hh-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 35566677778899999999999886 22 23467788888888888999999999999876654 44667777788889
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHH
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVI 147 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~l 147 (194)
...|+++.|...|+...+. .|+...+..+
T Consensus 96 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 124 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI--CGENPEYSEL 124 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh--ccccchHHHH
Confidence 9999999999999887654 3555554443
No 42
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.59 E-value=0.0078 Score=40.65 Aligned_cols=109 Identities=6% Similarity=-0.108 Sum_probs=77.6
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCCCHHhHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREE--VLFDQHTFGDII 113 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p~~~ty~~li 113 (194)
.+......+.+.|++++|.+.|+.+.....-.| ....+..+-..+.+.|++++|...|..+.... .......+..+-
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 345566677888999999999999973222111 23456668888899999999999999887642 222345677788
Q ss_pred HHHhcCCChHHHHHHHHHhHhCCCCCChhhHHH
Q 029406 114 RAFSDSGLPSEAMFIYNEMRSSPATPISLPFRV 146 (194)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ 146 (194)
.++.+.|+.+.|...++..... .+.+..+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~ 115 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR-YPGSSAAKLA 115 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH-CcCChhHHHH
Confidence 8888999999999999988776 2334444443
No 43
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.58 E-value=0.0035 Score=55.36 Aligned_cols=125 Identities=7% Similarity=-0.126 Sum_probs=97.5
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC
Q 029406 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 119 (194)
+-..+...|++++|+..|+.... ..|+ ...|..+-..+...|++++|...|++..+.. +-+...|..+-..|...
T Consensus 337 lg~~~~~~g~~~eA~~~~~kal~---l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 412 (615)
T TIGR00990 337 RGTFKCLKGKHLEALADLSKSIE---LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIK 412 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 33445568999999999999873 3454 5678888888889999999999999887653 33577899999999999
Q ss_pred CChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccccc
Q 029406 120 GLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVY 175 (194)
Q Consensus 120 g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~ 175 (194)
|++++|...|+...+.. +.+...|..+...+.+.|+ .+.|...++.....
T Consensus 413 g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~-----~~eA~~~~~~al~~ 462 (615)
T TIGR00990 413 GEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGS-----IASSMATFRRCKKN 462 (615)
T ss_pred CCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHh
Confidence 99999999999887652 3346677777788888899 88888887766443
No 44
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.54 E-value=0.0034 Score=47.51 Aligned_cols=123 Identities=4% Similarity=-0.030 Sum_probs=75.6
Q ss_pred CCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH-hcCCC--hHHH
Q 029406 49 DQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF-SDSGL--PSEA 125 (194)
Q Consensus 49 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~-~~~g~--~~~a 125 (194)
++.+++...++... ..-+.|...|..+=..|...|++++|...|.+..+.. +-|...+..+-.++ ...|+ .++|
T Consensus 53 ~~~~~~i~~l~~~L--~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 53 QTPEAQLQALQDKI--RANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred hhHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 34444554454443 1233456677777777777777777777777666543 22555666665553 55555 4777
Q ss_pred HHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCchh
Q 029406 126 MFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180 (194)
Q Consensus 126 ~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~ 180 (194)
..++++..+.. +-+..++..+-..+.+.|+ .++|...++.+....||++
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~-----~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQAD-----YAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCC-----HHHHHHHHHHHHhhCCCCc
Confidence 77777766552 2245666666666777777 7777777777766666654
No 45
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.52 E-value=0.01 Score=42.48 Aligned_cols=103 Identities=5% Similarity=-0.165 Sum_probs=81.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+...-..+...|++++|...|+.... --+.+...|..+=.++.+.|++++|...|....... +.+...+..+-.++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 44455666789999999999999872 223467788888888999999999999999998753 447788999999999
Q ss_pred cCCChHHHHHHHHHhHhCCCCCChhhHH
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPISLPFR 145 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~ 145 (194)
..|++++|...|+..... .|+...|.
T Consensus 104 ~~g~~~eAi~~~~~Al~~--~p~~~~~~ 129 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKM--SYADASWS 129 (144)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCChHHH
Confidence 999999999999997664 45544333
No 46
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.52 E-value=0.011 Score=55.00 Aligned_cols=115 Identities=11% Similarity=-0.046 Sum_probs=63.3
Q ss_pred CCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHH
Q 029406 49 DQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFI 128 (194)
Q Consensus 49 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l 128 (194)
|++++|...|+...+ ..|+...|..+-.++.+.|++++|...+.+..... +-+...++.+-..+...|++++|..+
T Consensus 590 Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 590 GQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 566666666655542 33455555555566666666666666666555442 22344555555566666666666666
Q ss_pred HHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccc
Q 029406 129 YNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 129 ~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
|+...+. .+-+...+..+-..+...|+ .+.|...++...
T Consensus 666 l~~AL~l-~P~~~~a~~nLA~al~~lGd-----~~eA~~~l~~Al 704 (987)
T PRK09782 666 LERAHKG-LPDDPALIRQLAYVNQRLDD-----MAATQHYARLVI 704 (987)
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHH
Confidence 6655443 12234555556666666666 555555555443
No 47
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.49 E-value=0.0039 Score=39.14 Aligned_cols=93 Identities=12% Similarity=0.092 Sum_probs=68.9
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhc
Q 029406 39 VSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118 (194)
Q Consensus 39 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 118 (194)
..+...+...|++++|...|+...+ . .+.+...+..+-..+...+++++|.+.|....... +.+..++..+...+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALE-L-DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHh-c-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3455566778899999999988863 2 22344667777888888889999999988877654 3344678888888888
Q ss_pred CCChHHHHHHHHHhHh
Q 029406 119 SGLPSEAMFIYNEMRS 134 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~ 134 (194)
.|+.+.|...+.....
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 8999988888877654
No 48
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.47 E-value=0.00053 Score=44.28 Aligned_cols=82 Identities=13% Similarity=0.088 Sum_probs=55.1
Q ss_pred cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHH
Q 029406 48 QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127 (194)
Q Consensus 48 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 127 (194)
+|+++.|+.+|+.+.+...-.|+...+..+-.+|.+.|++++|..++++ ...+.. +....-.+-.+|.+.|++++|..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 5788899999999874222222455555578888889999999999987 222211 23444455778888899999988
Q ss_pred HHHH
Q 029406 128 IYNE 131 (194)
Q Consensus 128 l~~~ 131 (194)
+|+.
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8864
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=97.44 E-value=0.05 Score=47.63 Aligned_cols=113 Identities=11% Similarity=0.015 Sum_probs=79.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC-CHHhHHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF-DQHTFGDIIRA 115 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~ 115 (194)
+..+-..+...|++++|...++.... ..|+ ...+..+...+...|++++|...+.+..... .| +...+..+-.+
T Consensus 375 ~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~ 450 (553)
T PRK12370 375 KYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMF 450 (553)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHH
Confidence 44455667789999999999999973 3343 2233334445666899999999999887653 23 44557778888
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCC-hhhHHHHHHhhCCCCc
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPI-SLPFRVILKGLIPYPE 156 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~-~~ty~~ll~~~~~~g~ 156 (194)
|...|+.++|...+..+... .|+ ....+.+...|+..|+
T Consensus 451 l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 451 LSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred HHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccHH
Confidence 89999999999999886544 344 3444555556677765
No 50
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.43 E-value=0.003 Score=44.29 Aligned_cols=83 Identities=13% Similarity=0.111 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHH---------------hcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHh
Q 029406 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLK---------------REEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~---------------~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~ 134 (194)
|..++..+|.++++.|+.+....+....= .....|+..+..+++.+|+.+|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34456666666666666666655553321 223668889999999999999999999999988765
Q ss_pred C-CCCCChhhHHHHHHhhC
Q 029406 135 S-PATPISLPFRVILKGLI 152 (194)
Q Consensus 135 ~-g~~p~~~ty~~ll~~~~ 152 (194)
. +++.+..+|..|++-+.
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HcCCCCCHHHHHHHHHHHH
Confidence 5 77777888888887654
No 51
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.42 E-value=0.0032 Score=49.92 Aligned_cols=90 Identities=10% Similarity=0.072 Sum_probs=64.3
Q ss_pred CCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCC----------------hHHHH
Q 029406 68 RPDMFFYRDMLMMLARN-----KKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGL----------------PSEAM 126 (194)
Q Consensus 68 ~p~~~~~~~li~~~~~~-----g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~----------------~~~a~ 126 (194)
..|..+|-.++..+... ++++-.-.-+..|++.|+.-|..+|+.||+.+=+..- -.=+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 34555666666555443 4555555666777777777777788877777665532 23457
Q ss_pred HHHHHhHhCCCCCChhhHHHHHHhhCCCCch
Q 029406 127 FIYNEMRSSPATPISLPFRVILKGLIPYPEF 157 (194)
Q Consensus 127 ~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~ 157 (194)
.++++|...|+.||-.+-..|++++.+.|..
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 8899999999999999999999999988873
No 52
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.41 E-value=0.0024 Score=50.99 Aligned_cols=116 Identities=11% Similarity=0.130 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
|+.+|..+-+.+.++.|.++|...++...+...++...++|..++ .++.+.|..||+...+. +..+...|...|.-+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~-~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYC-NKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT-CS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 444455555555555566666655533333444444444544432 23345556666555432 3335555555555555
Q ss_pred cCCChHHHHHHHHHhHhCCCCCCh---hhHHHHHHhhCCCCc
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPIS---LPFRVILKGLIPYPE 156 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~~---~ty~~ll~~~~~~g~ 156 (194)
+.|+.+.|..+|+..... +.++. ..|..+++--.+.|+
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gd 122 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGD 122 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCC
Confidence 566666666666555443 22211 355555555445554
No 53
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.40 E-value=0.0028 Score=44.29 Aligned_cols=108 Identities=11% Similarity=0.022 Sum_probs=85.1
Q ss_pred CCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHH
Q 029406 67 YRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFR 145 (194)
Q Consensus 67 ~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~ 145 (194)
..| +......+-..+...|++++|...|......+ +.+...|..+-.+|.+.|+++.|..+|+.....+ +.+..+|.
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~ 89 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYF 89 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHH
Confidence 344 34556677788889999999999999987754 4477889999999999999999999999876653 44567777
Q ss_pred HHHHhhCCCCchHHhHHHHHhhhcccccccCCchhh
Q 029406 146 VILKGLIPYPEFREKVKDDFLELFPDMIVYDPPEDL 181 (194)
Q Consensus 146 ~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~~ 181 (194)
.+-..+...|+ .+.|...++......|....
T Consensus 90 ~la~~~~~~g~-----~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 90 HAAECLLALGE-----PESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHHHHHHcCC-----HHHHHHHHHHHHHhccccch
Confidence 77888889999 88888888877666654443
No 54
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.38 E-value=0.023 Score=54.05 Aligned_cols=121 Identities=8% Similarity=-0.007 Sum_probs=81.8
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 119 (194)
.....+...|+.++|..+++. .+.+...+..+-..+.+.|++++|+..|.+..+.. +-+...+..+...|...
T Consensus 578 ~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~ 650 (1157)
T PRK11447 578 ETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQ 650 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 445556667777777777661 23445556667777778888888888888777653 33567777888888888
Q ss_pred CChHHHHHHHHHhHhCCCCC-ChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 120 GLPSEAMFIYNEMRSSPATP-ISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 120 g~~~~a~~l~~~M~~~g~~p-~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
|++++|...++...+. .| +..++..+...+...|+ .++|.++++....
T Consensus 651 g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~-----~~eA~~~~~~al~ 699 (1157)
T PRK11447 651 GDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGD-----TAAAQRTFNRLIP 699 (1157)
T ss_pred CCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCC-----HHHHHHHHHHHhh
Confidence 8888888888866543 23 34455556666667777 7777777776544
No 55
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.38 E-value=0.028 Score=52.36 Aligned_cols=126 Identities=6% Similarity=-0.205 Sum_probs=76.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCC
Q 029406 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120 (194)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g 120 (194)
+...+.+.|+++.|...|+... ... +++...+..+...+.+.|++++|...+.+..+. .|+...|..+-..+.+.|
T Consensus 548 la~all~~Gd~~eA~~~l~qAL-~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG 623 (987)
T PRK09782 548 AANTAQAAGNGAARDRWLQQAE-QRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRH 623 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHH-hcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCC
Confidence 3344556677777777777665 222 222222222223333457777777777766544 456677777777777788
Q ss_pred ChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccC
Q 029406 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 121 ~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
++++|...|+...... +-+...++.+-..+...|+ .++|...++......
T Consensus 624 ~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~-----~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 624 NVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGD-----IAQSREMLERAHKGL 673 (987)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHhC
Confidence 8888887777766552 3334566666667777777 777777776654433
No 56
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.36 E-value=0.019 Score=48.06 Aligned_cols=128 Identities=11% Similarity=-0.000 Sum_probs=93.6
Q ss_pred HHHHHHHh--cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHH--HHHHH
Q 029406 40 SVLAEFQR--QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFG--DIIRA 115 (194)
Q Consensus 40 ~ll~~~~~--~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~--~li~~ 115 (194)
.+..++.. .|+++.|.+....-. ...-.| ...|-..-.+..+.|+++.|...+.++.+. .|+...+- .....
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~-~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l 162 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNA-DHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRI 162 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH-hcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHH
Confidence 34444443 699999998888765 221112 233433345557899999999999999764 55654333 44678
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
+...|+++.|...++...+.. +-+...+..+...|.+.|+ ++.+.++++.+....+
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gd-----w~~a~~~l~~l~k~~~ 218 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGA-----WSSLLDILPSMAKAHV 218 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHcCC
Confidence 889999999999999997774 4457788899999999999 9999999998876544
No 57
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.32 E-value=0.0023 Score=40.19 Aligned_cols=95 Identities=11% Similarity=0.067 Sum_probs=73.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCC
Q 029406 74 YRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIP 153 (194)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~ 153 (194)
+..+-..+...|++++|..+|.+..+.. +.+...+..+...|...+++++|..+|+...... +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4556677888999999999999887653 2344778889999999999999999999876653 3344677788888888
Q ss_pred CCchHHhHHHHHhhhccccccc
Q 029406 154 YPEFREKVKDDFLELFPDMIVY 175 (194)
Q Consensus 154 ~g~~~~~~~~~a~~~~~~m~~~ 175 (194)
.|+ .+.|...+......
T Consensus 81 ~~~-----~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGK-----YEEALEAYEKALEL 97 (100)
T ss_pred HHh-----HHHHHHHHHHHHcc
Confidence 888 77777777654433
No 58
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.31 E-value=0.01 Score=51.60 Aligned_cols=166 Identities=16% Similarity=0.086 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHhcCCc-----------------hhHHHHHHHHh--hhhchhhHHH---HHHHHHhcCCHhHHHHHHHHH
Q 029406 4 ESLMVAKELKRLQSHP-----------------VRFDRFIKSHV--SRLLKSDLVS---VLAEFQRQDQVFLCMKLYDVV 61 (194)
Q Consensus 4 ~a~~vi~~l~~~~~~~-----------------~~~~~~~~~~~--~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~m 61 (194)
+--.+|+..+|+-... ++++..+...- -++.+++|.+ +=..|.|.++++.|.-.|+.-
T Consensus 436 dh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA 515 (638)
T KOG1126|consen 436 DHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKA 515 (638)
T ss_pred HHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhh
Confidence 4445666666664432 35566555542 3444567765 456688999999999999988
Q ss_pred HhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCC
Q 029406 62 RKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPI 140 (194)
Q Consensus 62 ~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~ 140 (194)
.+ +.| +.+....+...+-+.|..++|++++++.....-+ |...----...+...+++++|+..++++++- .|+
T Consensus 516 ~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~ 589 (638)
T KOG1126|consen 516 VE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKEL--VPQ 589 (638)
T ss_pred hc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh--Ccc
Confidence 63 666 5777788888999999999999999998876533 4444444456667789999999999999875 565
Q ss_pred -hhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCchh
Q 029406 141 -SLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180 (194)
Q Consensus 141 -~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~ 180 (194)
...|-.+-..|.+.|. .+.|..-|..+..-+|+..
T Consensus 590 es~v~~llgki~k~~~~-----~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 590 ESSVFALLGKIYKRLGN-----TDLALLHFSWALDLDPKGA 625 (638)
T ss_pred hHHHHHHHHHHHHHHcc-----chHHHHhhHHHhcCCCccc
Confidence 5677777788998898 8888888887766555544
No 59
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.30 E-value=0.0043 Score=44.43 Aligned_cols=112 Identities=10% Similarity=-0.075 Sum_probs=87.4
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHh
Q 029406 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 55 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~ 134 (194)
..+|+...+ +.|+ .+...-..+...|++++|...|....... +.+...|..+-.++.+.|++++|...|+....
T Consensus 13 ~~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 344555442 3344 35556677788999999999999987664 44888999999999999999999999999986
Q ss_pred CCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCc
Q 029406 135 SPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 135 ~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
. -+.+..++..+-.++...|+ .++|...|+......|.
T Consensus 87 l-~p~~~~a~~~lg~~l~~~g~-----~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 87 L-DASHPEPVYQTGVCLKMMGE-----PGLAREAFQTAIKMSYA 124 (144)
T ss_pred c-CCCCcHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhCCC
Confidence 5 24577888888889999999 88888888876655543
No 60
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.28 E-value=0.013 Score=53.34 Aligned_cols=127 Identities=10% Similarity=0.038 Sum_probs=96.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+..+-..+...|++.+|..+|+.... . -+.+...+..+...+...|++++|+..+++.... .+.+.. +..+-..+.
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~-~-~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~ 127 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALS-L-EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYK 127 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHH
Confidence 56677778888999999999999863 1 2334666778888889999999999999998776 233555 888888899
Q ss_pred cCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
..|+.++|...++...+.. +-+...+..+...+...|. .+.|.+.++....
T Consensus 128 ~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~-----~e~Al~~l~~~~~ 178 (765)
T PRK10049 128 RAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRL-----SAPALGAIDDANL 178 (765)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC-----hHHHHHHHHhCCC
Confidence 9999999999999987752 3344555666677777777 7777777775554
No 61
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.27 E-value=0.037 Score=49.73 Aligned_cols=126 Identities=9% Similarity=-0.007 Sum_probs=99.6
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
.+.-+-....+.|++++|..+++.... +.|| ......+...+.+.+++++|+..+++.....-. +....+.+-.+
T Consensus 88 ~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~ 163 (694)
T PRK15179 88 FQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKS 163 (694)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHH
Confidence 344556666678999999999999973 5575 667778889999999999999999998876422 66678888888
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
+.+.|.+++|..+|++.... .+-+..++..+-..+-..|+ .+.|...|+..
T Consensus 164 l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~-----~~~A~~~~~~a 214 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGA-----LWRARDVLQAG 214 (694)
T ss_pred HHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCC-----HHHHHHHHHHH
Confidence 99999999999999999873 23346788888888888888 67766666654
No 62
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.27 E-value=0.0076 Score=54.98 Aligned_cols=130 Identities=12% Similarity=0.057 Sum_probs=91.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-----CCCCHHhHHHHHH
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE-----VLFDQHTFGDIIR 114 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-----~~p~~~ty~~li~ 114 (194)
.-|-++...++..++++-|+.++ ..+.+...+.--.+-++|...+.+++|..++....... ..++......|.-
T Consensus 297 Drl~aL~~r~r~~~vi~~y~~l~-~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~y 375 (822)
T PRK14574 297 DRLGALLVRHQTADLIKEYEAME-AEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYY 375 (822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhh-hcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHH
Confidence 44566677788888888888888 56766666677788888888888888888888876532 2334444678888
Q ss_pred HHhcCCChHHHHHHHHHhHhC-CC----------C--CChh-hHHHHHHhhCCCCchHHhHHHHHhhhccccccc
Q 029406 115 AFSDSGLPSEAMFIYNEMRSS-PA----------T--PISL-PFRVILKGLIPYPEFREKVKDDFLELFPDMIVY 175 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~-g~----------~--p~~~-ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~ 175 (194)
+|...+++++|..+++.+.+. .. . ||.. .+..++..+...|+ ..+|.+.++.+...
T Consensus 376 A~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd-----l~~Ae~~le~l~~~ 445 (822)
T PRK14574 376 SLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND-----LPTAQKKLEDLSST 445 (822)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHh
Confidence 888888888888888888762 10 1 2222 23344555667788 77888887776443
No 63
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.25 E-value=0.012 Score=41.95 Aligned_cols=123 Identities=11% Similarity=0.043 Sum_probs=71.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHH---HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCH--HhHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFF---YRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ--HTFGDI 112 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~--~ty~~l 112 (194)
+..++..+ ..++...+...++.+.+. .+.+... .-.+=..+...|++++|...|.......-.|+. ...-.|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 33444444 367777777777777632 2222122 222335666678888888888877776522221 234445
Q ss_pred HHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcc
Q 029406 113 IRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFP 170 (194)
Q Consensus 113 i~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~ 170 (194)
-..+...|++++|...++......+ ....+...-+.|.+.|+ .+.|...|+
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~-----~~~A~~~y~ 142 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGD-----YDEARAAYQ 142 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCC-----HHHHHHHHH
Confidence 6777777888888887766433332 23344455566777777 777766654
No 64
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.24 E-value=0.076 Score=44.50 Aligned_cols=123 Identities=10% Similarity=0.006 Sum_probs=97.1
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
....+...+...|+.+.|.++++...+ ..||.. -.++.+....++.+++++..+...+.. +=|...+.++-..|
T Consensus 265 ~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~ 338 (398)
T PRK10747 265 LQVAMAEHLIECDDHDTAQQIILDGLK---RQYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLL 338 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHH--HHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 345677888889999999999988873 345542 123444456699999999999887653 23566788999999
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
.+.+++++|...|+...+. .|+..+|..+...+.+.|+ .++|.+++++-
T Consensus 339 ~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~-----~~~A~~~~~~~ 387 (398)
T PRK10747 339 MKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHK-----PEEAAAMRRDG 387 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHH
Confidence 9999999999999998765 6999999999999999999 88887777643
No 65
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.22 E-value=0.0036 Score=50.25 Aligned_cols=114 Identities=9% Similarity=0.083 Sum_probs=85.9
Q ss_pred HHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHh---HHHHHHHHhcCCC
Q 029406 45 FQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHT---FGDIIRAFSDSGL 121 (194)
Q Consensus 45 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t---y~~li~~~~~~g~ 121 (194)
+...|++++|+++++.. .+.......+..|.+.++++.|.+.+..|.+.+ .|... ..+.++.+.-.+.
T Consensus 112 ~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhCchh
Confidence 44579999998887543 467788889999999999999999999998764 34432 3444444444467
Q ss_pred hHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccc
Q 029406 122 PSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 122 ~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
+.+|+.+|+++.++ +.++..+.+.+..++...|+ +++|.+++.+..
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~-----~~eAe~~L~~al 228 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGH-----YEEAEELLEEAL 228 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT------HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCC-----HHHHHHHHHHHH
Confidence 99999999998665 67888899999999999999 889888877653
No 66
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.019 Score=45.12 Aligned_cols=50 Identities=16% Similarity=0.121 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 85 KKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 85 g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
+.+.+|.-+|++|.+ ...|+..+-|-...++...|++++|..+++....+
T Consensus 187 ek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 345555555555522 13445555555555555555555555555554443
No 67
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.19 E-value=0.0079 Score=40.62 Aligned_cols=103 Identities=11% Similarity=0.108 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC--CCCCChhhHHHHH
Q 029406 73 FYRDMLMMLARNKKVVEAKQVWEDLKREE--VLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS--PATPISLPFRVIL 148 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~--g~~p~~~ty~~ll 148 (194)
++..+...+.+.|++++|...|..+.... -......+..+..++.+.|+++.|...|+..... +.+.....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 45667777889999999999999998653 1122456777899999999999999999998764 1122245667777
Q ss_pred HhhCCCCchHHhHHHHHhhhcccccccCCchh
Q 029406 149 KGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180 (194)
Q Consensus 149 ~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~ 180 (194)
..+.+.|+ .+.|...++......|...
T Consensus 84 ~~~~~~~~-----~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 84 MSLQELGD-----KEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHhCC-----hHHHHHHHHHHHHHCcCCh
Confidence 77888888 8888898888766655444
No 68
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.19 E-value=0.049 Score=45.79 Aligned_cols=127 Identities=7% Similarity=-0.110 Sum_probs=93.4
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHH---HHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCCCHHhHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFF---YRDMLMMLARNKKVVEAKQVWEDLKREE-VLFDQHTFGDI 112 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~ty~~l 112 (194)
-...+...+...|+.+.|.++++...+ ..||... .....-.....++.+.+.+.++...+.. -.|+.....++
T Consensus 265 l~~~~a~~l~~~g~~~~A~~~l~~~l~---~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sL 341 (409)
T TIGR00540 265 LKIALAEHLIDCDDHDSAQEIIFDGLK---KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRAL 341 (409)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHh---hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 345677888899999999999999974 2244331 2222222334578888888888776542 33332566688
Q ss_pred HHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccc
Q 029406 113 IRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 113 i~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~ 171 (194)
-..|.+.|++++|.+.|+........|+...+..+...+.+.|+ .++|.+++++
T Consensus 342 g~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~-----~~~A~~~~~~ 395 (409)
T TIGR00540 342 GQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGD-----KAEAAAMRQD 395 (409)
T ss_pred HHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHH
Confidence 88999999999999999965554557999999999999999999 8888888775
No 69
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.18 E-value=0.037 Score=52.66 Aligned_cols=129 Identities=12% Similarity=0.032 Sum_probs=98.6
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+..+-..+.+.|++++|+..|+.... . -+-+...+..+...|...|++++|+..++...... +-+..++..+-.+
T Consensus 604 ~~~~~La~~~~~~g~~~~A~~~y~~al~-~-~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~ 680 (1157)
T PRK11447 604 RIDLTLADWAQQRGDYAAARAAYQRVLT-R-EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALA 680 (1157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHH
Confidence 3445667778889999999999999973 2 23468889999999999999999999999876542 2245567778888
Q ss_pred HhcCCChHHHHHHHHHhHhCC--CCC---ChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 116 FSDSGLPSEAMFIYNEMRSSP--ATP---ISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g--~~p---~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
+...|++++|..+|+...... .+| +...+..+...+...|+ .++|...++..
T Consensus 681 ~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~-----~~~A~~~y~~A 737 (1157)
T PRK11447 681 WAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQ-----PQQALETYKDA 737 (1157)
T ss_pred HHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCC-----HHHHHHHHHHH
Confidence 999999999999999987642 122 22455556677888899 77777776654
No 70
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.16 E-value=0.052 Score=49.39 Aligned_cols=136 Identities=14% Similarity=0.085 Sum_probs=95.2
Q ss_pred hhchhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHH
Q 029406 32 RLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGD 111 (194)
Q Consensus 32 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~ 111 (194)
++.+......+......|+.++|+++|.... . .-..+...+..+-..+.+.|++++|..+|++..... +.+...+..
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~-~-~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 88 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYR-V-HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRG 88 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-h-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 3334445556666778888888888888885 2 223455567888888888888888888888876552 334556777
Q ss_pred HHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 112 IIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 112 li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
+...+...|++++|...+++..+. .+.+.. +..+...+...|+ .+.|...++......|
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~-----~~~Al~~l~~al~~~P 147 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGR-----HWDELRAMTQALPRAP 147 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCC-----HHHHHHHHHHHHHhCC
Confidence 888888888888888888888665 233444 7777777777888 6667766666544333
No 71
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.11 E-value=0.056 Score=41.49 Aligned_cols=131 Identities=11% Similarity=0.051 Sum_probs=87.5
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhC--------CCHHHHHHHHHHHHhcCCCCCH-
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDM-FFYRDMLMMLARN--------KKVVEAKQVWEDLKREEVLFDQ- 106 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~--------g~~~~a~~l~~~m~~~g~~p~~- 106 (194)
.+..+-..+...|+++.|...|+...+...-.|.. ..+..+=..+.+. |++++|...|..+.... |+.
T Consensus 72 a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~ 149 (235)
T TIGR03302 72 AQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSE 149 (235)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCCh
Confidence 34556677888999999999999997433322332 1233333333332 67899999999887652 222
Q ss_pred HhH-----------------HHHHHHHhcCCChHHHHHHHHHhHhC-C-CCCChhhHHHHHHhhCCCCchHHhHHHHHhh
Q 029406 107 HTF-----------------GDIIRAFSDSGLPSEAMFIYNEMRSS-P-ATPISLPFRVILKGLIPYPEFREKVKDDFLE 167 (194)
Q Consensus 107 ~ty-----------------~~li~~~~~~g~~~~a~~l~~~M~~~-g-~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~ 167 (194)
..+ -.+-..|.+.|++..|...++...+. . -+.....+..+...+.+.|+ .++|..
T Consensus 150 ~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~-----~~~A~~ 224 (235)
T TIGR03302 150 YAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL-----KDLAQD 224 (235)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC-----HHHHHH
Confidence 111 13456678889999999999998765 1 12235688888899999999 788877
Q ss_pred hcccccc
Q 029406 168 LFPDMIV 174 (194)
Q Consensus 168 ~~~~m~~ 174 (194)
+++.+..
T Consensus 225 ~~~~l~~ 231 (235)
T TIGR03302 225 AAAVLGA 231 (235)
T ss_pred HHHHHHh
Confidence 7765543
No 72
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.10 E-value=0.025 Score=47.78 Aligned_cols=111 Identities=14% Similarity=0.019 Sum_probs=91.1
Q ss_pred HHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC-HHhHHHHHHHHhcCCChH
Q 029406 45 FQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFD-QHTFGDIIRAFSDSGLPS 123 (194)
Q Consensus 45 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~ 123 (194)
....|+++.|...++.+.+ ..+-|.+.+......+.+.++.++|.+.++++... .|+ ....-.+-.+|.+.|+..
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 3467889999999999863 34456777788889999999999999999999765 555 566777888999999999
Q ss_pred HHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHh
Q 029406 124 EAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREK 160 (194)
Q Consensus 124 ~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~ 160 (194)
+|..+++.-..+ .+-|+..|..|-.+|...|+..+.
T Consensus 392 eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 392 EAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred HHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHH
Confidence 999999987655 467889999999999999983333
No 73
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.10 E-value=0.015 Score=53.06 Aligned_cols=105 Identities=10% Similarity=0.061 Sum_probs=44.8
Q ss_pred HhcCCHhHHHHHHHHHHhhcCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChH
Q 029406 46 QRQDQVFLCMKLYDVVRKEIWYRPDM--FFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123 (194)
Q Consensus 46 ~~~~~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 123 (194)
.+.|+++.|+..|++..+ ..|+. ..+ .++..+...|+.++|+..+++.. .....+....-.+...|...|+++
T Consensus 45 ~r~Gd~~~Al~~L~qaL~---~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESK---AGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HhCCCHHHHHHHHHHHHh---hCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHH
Confidence 345555555555555542 22332 122 45555555555555555555544 111111222222233444445555
Q ss_pred HHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCc
Q 029406 124 EAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 124 ~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~ 156 (194)
+|..+|+.+.+.. +-+...+..++..+...++
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q 151 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGR 151 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCC
Confidence 5555555554431 1123333344444444444
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.10 E-value=0.053 Score=43.57 Aligned_cols=122 Identities=10% Similarity=-0.097 Sum_probs=86.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC-CHHhHHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF-DQHTFGDIIRA 115 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~ 115 (194)
+...=..+.+.|++++|...|+...+ ..| +...|+.+=..|...|++++|...|++..+. .| +..+|..+-.+
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~---l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~ 141 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALA---LRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 33444456778999999999988873 334 5788888888999999999999999988764 34 46678888888
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccc
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~ 171 (194)
+...|++++|...|+..... .|+......+...+...++ .++|.+.|..
T Consensus 142 l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~-----~~~A~~~l~~ 190 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLD-----PKQAKENLKQ 190 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCC-----HHHHHHHHHH
Confidence 88999999999999987654 3433222222222334455 6666666643
No 75
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.06 E-value=0.097 Score=43.99 Aligned_cols=152 Identities=7% Similarity=-0.036 Sum_probs=106.0
Q ss_pred HHHHhcCCchhHHHHHHHHhhhhchhhHHHHHHHHHh--cCCHhHHHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhCCCH
Q 029406 11 ELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQR--QDQVFLCMKLYDVVRKEIWYRPDM-FFYRDMLMMLARNKKV 87 (194)
Q Consensus 11 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~ 87 (194)
.+.+.-..|..+..+...... +.....+..++.. .|++..|.+.+....+ ..|+. ..+-..-.+..+.|++
T Consensus 61 l~~~~~~~p~~~~~~~~~r~~---~k~~~~~~~glla~~~g~~~~A~~~l~~~~~---~~~~~~~~~llaA~aa~~~g~~ 134 (409)
T TIGR00540 61 GLRRFFRLGAHSRGWFSGRKR---RKAQKQTEEALLKLAEGDYAKAEKLIAKNAD---HAAEPVLNLIKAAEAAQQRGDE 134 (409)
T ss_pred HHHHHHHccHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHCCCH
Confidence 334444445554444433322 2333455566554 7999999999987762 34553 3344445677788999
Q ss_pred HHHHHHHHHHHhcCCCCCHH--hHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHH
Q 029406 88 VEAKQVWEDLKREEVLFDQH--TFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDF 165 (194)
Q Consensus 88 ~~a~~l~~~m~~~g~~p~~~--ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a 165 (194)
+.|.+.+.+..+.. |+.. .--+....+...|+++.|...++.+.+.. +-+...+..+...+.+.|+ ++.+
T Consensus 135 ~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d-----~~~a 206 (409)
T TIGR00540 135 ARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGA-----WQAL 206 (409)
T ss_pred HHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhh-----HHHH
Confidence 99999999986543 4442 34445788888999999999999998874 3356788889999999999 9999
Q ss_pred hhhcccccccC
Q 029406 166 LELFPDMIVYD 176 (194)
Q Consensus 166 ~~~~~~m~~~~ 176 (194)
.++++.....+
T Consensus 207 ~~~l~~l~k~~ 217 (409)
T TIGR00540 207 DDIIDNMAKAG 217 (409)
T ss_pred HHHHHHHHHcC
Confidence 99988887653
No 76
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.98 E-value=0.011 Score=42.15 Aligned_cols=56 Identities=18% Similarity=0.160 Sum_probs=26.4
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 029406 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLK 98 (194)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 98 (194)
++..+...|+++.|..+.+.... .-+-|...|..+|.+|.+.|+..+|.++|..+.
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 33444445555555555555541 122345555555555555555555555555443
No 77
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.96 E-value=0.057 Score=40.81 Aligned_cols=108 Identities=5% Similarity=0.032 Sum_probs=82.9
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHH-HHhCCC--HHHHHHHHHHHHhcCCCCCHHhHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMM-LARNKK--VVEAKQVWEDLKREEVLFDQHTFGDI 112 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~-~~~~g~--~~~a~~l~~~m~~~g~~p~~~ty~~l 112 (194)
.+..+-..|...|+++.|...|+...+ +.| +...+..+=.+ |...|+ .++|.+++++..+..-. +...+..+
T Consensus 75 ~w~~Lg~~~~~~g~~~~A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~L 150 (198)
T PRK10370 75 QWALLGEYYLWRNDYDNALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLL 150 (198)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHH
Confidence 344555677789999999999999873 334 45566655554 467676 59999999999887533 77789999
Q ss_pred HHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHh
Q 029406 113 IRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG 150 (194)
Q Consensus 113 i~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~ 150 (194)
-..+.+.|++++|...|+.+.+. .+|+..-+..+ .+
T Consensus 151 A~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~~~i-~~ 186 (198)
T PRK10370 151 ASDAFMQADYAQAIELWQKVLDL-NSPRVNRTQLV-ES 186 (198)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh-CCCCccHHHHH-HH
Confidence 99999999999999999999876 46666665544 54
No 78
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.96 E-value=0.054 Score=45.84 Aligned_cols=114 Identities=10% Similarity=0.039 Sum_probs=80.4
Q ss_pred hHHHHHHHHHhcCCHhHHHHHH-HHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLY-DVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~-~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
.+..+-+.|-+.|+-.+|++.+ +..+ -++-+..+.-=|-..|....-.++++..|++. .-++|+..-|-.+|..
T Consensus 594 ilskl~dlydqegdksqafq~~ydsyr---yfp~nie~iewl~ayyidtqf~ekai~y~eka--aliqp~~~kwqlmias 668 (840)
T KOG2003|consen 594 ILSKLADLYDQEGDKSQAFQCHYDSYR---YFPCNIETIEWLAAYYIDTQFSEKAINYFEKA--ALIQPNQSKWQLMIAS 668 (840)
T ss_pred HHHHHHHHhhcccchhhhhhhhhhccc---ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHH--HhcCccHHHHHHHHHH
Confidence 3445555566666666665543 2222 12334555555555566666667777777654 3378999999999987
Q ss_pred Hhc-CCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCc
Q 029406 116 FSD-SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 116 ~~~-~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~ 156 (194)
|.+ .|++.+|+++|.+.+.+ ++-|......|++.+...|.
T Consensus 669 c~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 765 59999999999999876 78899999999999998885
No 79
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.94 E-value=0.0052 Score=37.57 Aligned_cols=52 Identities=12% Similarity=0.032 Sum_probs=29.2
Q ss_pred hcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 029406 47 RQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100 (194)
Q Consensus 47 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 100 (194)
+.|++++|+++|+.... . .+-+...+..+..+|.+.|++++|..++..+...
T Consensus 3 ~~~~~~~A~~~~~~~l~-~-~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ-R-NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHH-H-TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHH-H-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45666666666666642 1 1224555556666666666666666666655544
No 80
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.93 E-value=0.063 Score=44.39 Aligned_cols=105 Identities=14% Similarity=-0.005 Sum_probs=82.5
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCC
Q 029406 42 LAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGL 121 (194)
Q Consensus 42 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 121 (194)
-..+...|+++.|+..|++... . -+-+...|..+-.+|.+.|++++|+..+++..... +.+...|..+-.+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~-~-~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID-L-DPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 4456678999999999999973 2 22357778888888999999999999999998763 3367789999999999999
Q ss_pred hHHHHHHHHHhHhCCCCCChhhHHHHHHhh
Q 029406 122 PSEAMFIYNEMRSSPATPISLPFRVILKGL 151 (194)
Q Consensus 122 ~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~ 151 (194)
++.|...|+..... .|+......++..|
T Consensus 86 ~~eA~~~~~~al~l--~P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASL--APGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 99999999998764 45555555555444
No 81
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.92 E-value=0.029 Score=40.01 Aligned_cols=93 Identities=12% Similarity=0.039 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDM--FFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li 113 (194)
...+.+-..+...|+++.|...|++.. .....|+. ...-.|-..+...|++++|+..+....... +....+...=
T Consensus 49 ~A~l~lA~~~~~~g~~~~A~~~l~~~~-~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~G 125 (145)
T PF09976_consen 49 LAALQLAKAAYEQGDYDEAKAALEKAL-ANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLG 125 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH-hhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHH
Confidence 334456677888999999999999998 44423332 234446677888999999999997754433 3445677888
Q ss_pred HHHhcCCChHHHHHHHHH
Q 029406 114 RAFSDSGLPSEAMFIYNE 131 (194)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~ 131 (194)
..|.+.|+.++|...|+.
T Consensus 126 di~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 126 DIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHCCCHHHHHHHHHH
Confidence 899999999999999875
No 82
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.85 E-value=0.13 Score=40.15 Aligned_cols=123 Identities=8% Similarity=-0.090 Sum_probs=97.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 119 (194)
.......+.|++..|...|.... ..-++|...|+.+=-+|-+.|++++|..-|.+..+--.. +...+|.+--.|.-.
T Consensus 105 ~~gk~~~~~g~~~~A~~~~rkA~--~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~ 181 (257)
T COG5010 105 AQGKNQIRNGNFGEAVSVLRKAA--RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLR 181 (257)
T ss_pred HHHHHHHHhcchHHHHHHHHHHh--ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHc
Confidence 35566677899999999999985 667788999999999999999999999888887764322 456788888888899
Q ss_pred CChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccc
Q 029406 120 GLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 120 g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~ 171 (194)
|+.+.|..++..-...+ .-|...-..+.......|+ .+.|..+-..
T Consensus 182 gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~-----~~~A~~i~~~ 227 (257)
T COG5010 182 GDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGD-----FREAEDIAVQ 227 (257)
T ss_pred CCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCC-----hHHHHhhccc
Confidence 99999999998887764 3356666667777777888 8888777553
No 83
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.76 E-value=0.034 Score=47.98 Aligned_cols=131 Identities=15% Similarity=0.113 Sum_probs=100.2
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcC--CCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----C--CCC
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIW--YRPD----MFFYRDMLMMLARNKKVVEAKQVWEDLKRE----E--VLF 104 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g--~~p 104 (194)
.+..+...|+..+++++|..++....+... ..++ ..+++.|=..|-..|++++|..+|.+.... + ..+
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 355677788889999999999887754333 2232 358899999999999999999999877632 1 222
Q ss_pred -CHHhHHHHHHHHhcCCChHHHHHHHHH----hHhCCCC-CC-hhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 105 -DQHTFGDIIRAFSDSGLPSEAMFIYNE----MRSSPAT-PI-SLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 105 -~~~ty~~li~~~~~~g~~~~a~~l~~~----M~~~g~~-p~-~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
....+|.+-..|.+.+.+..|..+|.. |+..|.. |+ ..+|..|...|...|+ .+.|.++.+..
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~-----~e~a~~~~~~~ 476 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGN-----YEAAEELEEKV 476 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHccc-----HHHHHHHHHHH
Confidence 356789999999999999999998886 4344432 44 4799999999999999 88888886654
No 84
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.76 E-value=0.081 Score=50.12 Aligned_cols=136 Identities=10% Similarity=0.037 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCCCHHhHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE-VLFDQHTFGDIIR 114 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~ty~~li~ 114 (194)
..+..|+..|.+....++|-++|+.|.+..+ -....|......+.+....+.|..++.+..+.= -.-........+.
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHH
Confidence 4567889999999999999999999986555 567788999999999999899988888765431 1113445555566
Q ss_pred HHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCch
Q 029406 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPE 179 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~ 179 (194)
.-.+.|+.+++..+|+..... ++=..-.|++.|+.-.+.|+ .+.++.+|+.....+.++
T Consensus 1609 LEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~-----~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGD-----IKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCC-----HHHHHHHHHHHHhcCCCh
Confidence 667888889988888887665 33345788899998888888 777777877765554443
No 85
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.75 E-value=0.0087 Score=36.57 Aligned_cols=64 Identities=13% Similarity=0.114 Sum_probs=49.6
Q ss_pred HhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHH
Q 029406 82 ARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148 (194)
Q Consensus 82 ~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll 148 (194)
.+.|++++|+.+|.++.... +-|...+-.+..+|.+.|++++|..+++.+... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 46789999999999987663 227778888999999999999999999998766 45555555443
No 86
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.72 E-value=0.016 Score=41.30 Aligned_cols=72 Identities=17% Similarity=0.223 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhH-----hCCCCCChhhHH
Q 029406 73 FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR-----SSPATPISLPFR 145 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~-----~~g~~p~~~ty~ 145 (194)
....++..+...|++++|..+...+.... +.|...|..+|.+|...|+...|...|+.+. +-|+.|+..|-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 44667778888999999999999998764 5588999999999999999999999999874 348888876543
No 87
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.70 E-value=0.013 Score=51.10 Aligned_cols=121 Identities=14% Similarity=0.161 Sum_probs=89.3
Q ss_pred HHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChH
Q 029406 45 FQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123 (194)
Q Consensus 45 ~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 123 (194)
|-.+|.++.|+..|+.-.+ ..|+ ...||-|-.++-..|++.+|.+.+.+..... .-.....+.|-+.|..-|.++
T Consensus 296 YyeqG~ldlAI~~Ykral~---~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e 371 (966)
T KOG4626|consen 296 YYEQGLLDLAIDTYKRALE---LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIE 371 (966)
T ss_pred EeccccHHHHHHHHHHHHh---cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccch
Confidence 4567889999999888863 4454 6788888888888899999999888776653 224557788888888888888
Q ss_pred HHHHHHHHhHhCCCCCC-hhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccC
Q 029406 124 EAMFIYNEMRSSPATPI-SLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 124 ~a~~l~~~M~~~g~~p~-~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
.|..+|....+. .|. ...++.|...|-+.|+ .++|...+++.....
T Consensus 372 ~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgn-----l~~Ai~~YkealrI~ 418 (966)
T KOG4626|consen 372 EATRLYLKALEV--FPEFAAAHNNLASIYKQQGN-----LDDAIMCYKEALRIK 418 (966)
T ss_pred HHHHHHHHHHhh--ChhhhhhhhhHHHHHHhccc-----HHHHHHHHHHHHhcC
Confidence 888888876543 343 4677778778888887 777776666554433
No 88
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.61 E-value=0.13 Score=41.34 Aligned_cols=121 Identities=7% Similarity=-0.090 Sum_probs=89.6
Q ss_pred CCHhHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHH
Q 029406 49 DQVFLCMKLYDVVRKEIWYRPD--MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126 (194)
Q Consensus 49 ~~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~ 126 (194)
+..+.++.-+.++.......|+ ...|..+=..|.+.|+.++|...|.+..+.. +-+...|+.+-..|...|+++.|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3445667777777633333443 3456666667889999999999999887753 336789999999999999999999
Q ss_pred HHHHHhHhCCCCCC-hhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 127 FIYNEMRSSPATPI-SLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 127 ~l~~~M~~~g~~p~-~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
..|+...+. .|+ ..+|..+-..+...|+ .++|.+.|+......|
T Consensus 119 ~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~-----~~eA~~~~~~al~~~P 163 (296)
T PRK11189 119 EAFDSVLEL--DPTYNYAYLNRGIALYYGGR-----YELAQDDLLAFYQDDP 163 (296)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHhCC
Confidence 999998754 444 5677777777888899 8888877776554443
No 89
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.55 E-value=0.058 Score=37.80 Aligned_cols=84 Identities=10% Similarity=0.043 Sum_probs=69.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHH--------------hhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-cCC
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVR--------------KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR-EEV 102 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~--------------~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~g~ 102 (194)
+..+|-++++.|+++....+.+..- ......|+..+..+++.+|+.+|++..|+++.+...+ .++
T Consensus 5 ~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I 84 (126)
T PF12921_consen 5 LCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPI 84 (126)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCC
Confidence 4578889999999999888887652 1234558999999999999999999999999998875 578
Q ss_pred CCCHHhHHHHHHHHhcCCC
Q 029406 103 LFDQHTFGDIIRAFSDSGL 121 (194)
Q Consensus 103 ~p~~~ty~~li~~~~~~g~ 121 (194)
+.+..+|..|+..+...-+
T Consensus 85 ~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 85 PIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCCHHHHHHHHHHHHHhcC
Confidence 8889999999998776644
No 90
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.53 E-value=0.16 Score=39.18 Aligned_cols=128 Identities=11% Similarity=0.011 Sum_probs=96.2
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
...+.+--+|...|+...|.+-+++-.+ ..|+ ..+|..+=..|.+.|..+.|.+-|++..... +-+..+.|..=.
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~---~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~ 111 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALE---HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhH
Confidence 3455677788899999999999998873 3354 6688888888999999999999998876543 114556777777
Q ss_pred HHhcCCChHHHHHHHHHhHhCCCCC-ChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 115 AFSDSGLPSEAMFIYNEMRSSPATP-ISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~g~~p-~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
.+|..|.+++|+..|+.......-| -..||..+--+..+.|+ .+.|.+.|+.-
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq-----~~~A~~~l~ra 165 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ-----FDQAEEYLKRA 165 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC-----chhHHHHHHHH
Confidence 7899999999999999887764333 34677777666667788 77777776654
No 91
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.50 E-value=0.0022 Score=41.27 Aligned_cols=79 Identities=10% Similarity=0.119 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHHHhcCC-CCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCC-ChhhHHHHHHhhCCCCchHHhH
Q 029406 84 NKKVVEAKQVWEDLKREEV-LFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP-ISLPFRVILKGLIPYPEFREKV 161 (194)
Q Consensus 84 ~g~~~~a~~l~~~m~~~g~-~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p-~~~ty~~ll~~~~~~g~~~~~~ 161 (194)
.|+++.|+.+|+++....- .|+...+-.+-.+|.+.|++++|..+++. .. ..| +....-.+..+|.+.|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~----- 73 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGK----- 73 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT------
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCC-----
Confidence 5889999999999987643 23555566689999999999999999988 22 222 22344455777889999
Q ss_pred HHHHhhhcc
Q 029406 162 KDDFLELFP 170 (194)
Q Consensus 162 ~~~a~~~~~ 170 (194)
.++|.+.++
T Consensus 74 y~eAi~~l~ 82 (84)
T PF12895_consen 74 YEEAIKALE 82 (84)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888888765
No 92
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.47 E-value=0.077 Score=38.94 Aligned_cols=118 Identities=16% Similarity=0.144 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC--HHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHh
Q 029406 73 FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFD--QHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG 150 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~ 150 (194)
.|..+-..|...|++++|...|.+.....-.++ ...|..+-..|.+.|+++.|...+....... +-+...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344444445555666666665555544321111 2445555555556666666666555554321 1123333333333
Q ss_pred hCCCCch---------HHhHHHHHhhhcccccccCCchhhhhhhhhhhhcc
Q 029406 151 LIPYPEF---------REKVKDDFLELFPDMIVYDPPEDLFEDQEWRRESD 192 (194)
Q Consensus 151 ~~~~g~~---------~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~ 192 (194)
+...|+. .....+.|.++++.....+ |++..+..+|-+..+
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~ 165 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA-PNNYIEAQNWLKTTG 165 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC-chhHHHHHHHHHhcC
Confidence 3333320 0111345566666555544 444555555554433
No 93
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.46 E-value=0.18 Score=41.65 Aligned_cols=120 Identities=10% Similarity=-0.006 Sum_probs=91.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-hcCCCCCHHhHHHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLK-REEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~-~~g~~p~~~ty~~li~~~ 116 (194)
..+++.-+.+.|+.+.|.++..+-. .++..|+. ..+-.+.+.++.+.-++..++-. ..+..| ..+.+|=..|
T Consensus 266 ~~~~a~~li~l~~~~~A~~~i~~~L-k~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~ 338 (400)
T COG3071 266 VVAYAERLIRLGDHDEAQEIIEDAL-KRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLA 338 (400)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHH-HhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHH
Confidence 3477888889999999999877776 45666662 22233445677777776666444 455666 6889999999
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccc
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~ 171 (194)
.+++.+.+|...|+. .-...|+..+|+.+-+++.+.|+ ...|.+..++
T Consensus 339 ~k~~~w~kA~~~lea--Al~~~~s~~~~~~la~~~~~~g~-----~~~A~~~r~e 386 (400)
T COG3071 339 LKNKLWGKASEALEA--ALKLRPSASDYAELADALDQLGE-----PEEAEQVRRE 386 (400)
T ss_pred HHhhHHHHHHHHHHH--HHhcCCChhhHHHHHHHHHHcCC-----hHHHHHHHHH
Confidence 999999999999994 34558999999999999999999 6666666554
No 94
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.33 E-value=0.065 Score=43.38 Aligned_cols=132 Identities=14% Similarity=0.148 Sum_probs=83.2
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCCCH--HhHH
Q 029406 35 KSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREE-VLFDQ--HTFG 110 (194)
Q Consensus 35 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~--~ty~ 110 (194)
+++|+.=++.+. +.+.++|..+|-+|.+ ..|. ..+--+|=+.|-+-|.+++|+.+...+.++. .+.+. ...-
T Consensus 36 sr~Yv~GlNfLL-s~Q~dKAvdlF~e~l~---~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~ 111 (389)
T COG2956 36 SRDYVKGLNFLL-SNQPDKAVDLFLEMLQ---EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQ 111 (389)
T ss_pred cHHHHhHHHHHh-hcCcchHHHHHHHHHh---cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 455665555554 3457888888888873 2232 2233445566777788889988888877653 22222 2334
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccC
Q 029406 111 DIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 111 ~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
.|-.-|...|-+|+|..+|..+.+.|. .-...-..|+..|-...+ |++|.+.-+...+.+
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~tre-----W~KAId~A~~L~k~~ 171 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATRE-----WEKAIDVAERLVKLG 171 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhH-----HHHHHHHHHHHHHcC
Confidence 556667888888888888888877542 223456667777775555 777776655444433
No 95
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.30 E-value=0.27 Score=35.96 Aligned_cols=113 Identities=11% Similarity=-0.004 Sum_probs=75.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
+..+-..+...|++++|...|++..+...-.++ ...+..+-..+.+.|++++|...+.+..... +-+...+..+...|
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 445555667789999999999998732222222 4678888899999999999999999887653 22456667777777
Q ss_pred hcCCC--------------hHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCC
Q 029406 117 SDSGL--------------PSEAMFIYNEMRSSPATPISLPFRVILKGLIPYP 155 (194)
Q Consensus 117 ~~~g~--------------~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g 155 (194)
...|+ ++.|.+++...... +...|..++..+...|
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~----~p~~~~~~~~~~~~~~ 165 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL----APNNYIEAQNWLKTTG 165 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh----CchhHHHHHHHHHhcC
Confidence 77666 34555555554332 3333555555554444
No 96
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.26 E-value=0.027 Score=44.85 Aligned_cols=83 Identities=18% Similarity=0.210 Sum_probs=66.5
Q ss_pred CCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCC----------------HHHHHHHHHHHHhcCCCCCHHhHHHH
Q 029406 49 DQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKK----------------VVEAKQVWEDLKREEVLFDQHTFGDI 112 (194)
Q Consensus 49 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~----------------~~~a~~l~~~m~~~g~~p~~~ty~~l 112 (194)
+.++=-.-.+..|+ +.|+..|..+|+.||+.+-+... -.=+++++++|...|+.||..+-..|
T Consensus 86 ~HveFIy~ALk~m~-eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~l 164 (406)
T KOG3941|consen 86 THVEFIYTALKYMK-EYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDIL 164 (406)
T ss_pred chHHHHHHHHHHHH-HhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHH
Confidence 56666667788899 89999999999999999977653 13467899999999999999999999
Q ss_pred HHHHhcCCCh-HHHHHHHHHh
Q 029406 113 IRAFSDSGLP-SEAMFIYNEM 132 (194)
Q Consensus 113 i~~~~~~g~~-~~a~~l~~~M 132 (194)
|+++.+-+-. .+..++.=-|
T Consensus 165 vn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 165 VNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHhccccccHHHHHHHHHhh
Confidence 9999998755 3334444444
No 97
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.25 E-value=0.2 Score=40.36 Aligned_cols=152 Identities=14% Similarity=0.243 Sum_probs=92.6
Q ss_pred hHHHHHHHHhhhhch--hhHH-HHHHHHHhcCC-----HhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh--CC----C
Q 029406 21 RFDRFIKSHVSRLLK--SDLV-SVLAEFQRQDQ-----VFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLAR--NK----K 86 (194)
Q Consensus 21 ~~~~~~~~~~~~~~~--~~~~-~ll~~~~~~~~-----~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~--~g----~ 86 (194)
.....+++..+..++ .+.. .+...++-++. +.+.+.+++.|+ +.|++.+.++|-+..-.... .. .
T Consensus 40 ~~~~~IK~~t~~fS~lr~~~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~-~~gFk~~~y~~laA~~i~~~~~~~~~~~~ 118 (297)
T PF13170_consen 40 EISKYIKKNTGWFSPLRGNHRFILAALLDISFEDPEEAFKEVLDIYEKLK-EAGFKRSEYLYLAALIILEEEEKEDYDEI 118 (297)
T ss_pred HHHHHHHHcccccccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-HhccCccChHHHHHHHHHHhcccccHHHH
Confidence 455666666555543 3322 23333333333 455677888888 78899888888774444433 22 3
Q ss_pred HHHHHHHHHHHHhcC---CCCCHHhHHHHHHHHhcCCCh----HHHHHHHHHhHhCCCC-CChhhHHHHHHhhCCCCchH
Q 029406 87 VVEAKQVWEDLKREE---VLFDQHTFGDIIRAFSDSGLP----SEAMFIYNEMRSSPAT-PISLPFRVILKGLIPYPEFR 158 (194)
Q Consensus 87 ~~~a~~l~~~m~~~g---~~p~~~ty~~li~~~~~~g~~----~~a~~l~~~M~~~g~~-p~~~ty~~ll~~~~~~g~~~ 158 (194)
..+|..+|+.|++.. -.++-.++.+++.. ..+++ +.+..+|+.+.+.|+. -|...+.+-+-+++.... .
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~-~ 195 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDD-Q 195 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccc-h
Confidence 677888999999764 34566778888776 33333 5667788888888886 344445444445544333 3
Q ss_pred HhHHHHHhhhcccccccCC
Q 029406 159 EKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 159 ~~~~~~a~~~~~~m~~~~~ 177 (194)
+. ...+.++++.+...+.
T Consensus 196 ~~-v~r~~~l~~~l~~~~~ 213 (297)
T PF13170_consen 196 EK-VARVIELYNALKKNGV 213 (297)
T ss_pred HH-HHHHHHHHHHHHHcCC
Confidence 33 5677777776655443
No 98
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.25 E-value=0.21 Score=38.29 Aligned_cols=132 Identities=11% Similarity=0.028 Sum_probs=87.7
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCCCH-HhHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREE-VLFDQ-HTFGDI 112 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~-~ty~~l 112 (194)
..+......+...|+++.|...|+...+...-.|. ...+..+-.++.+.|++++|...++++.+.. -.|.. .++..+
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~ 113 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLR 113 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHH
Confidence 44567777888999999999999999732211121 2466777888999999999999999998653 12221 134444
Q ss_pred HHHHhcC--------CChHHHHHHHHHhHhCCCCCCh-hhHH-----------------HHHHhhCCCCchHHhHHHHHh
Q 029406 113 IRAFSDS--------GLPSEAMFIYNEMRSSPATPIS-LPFR-----------------VILKGLIPYPEFREKVKDDFL 166 (194)
Q Consensus 113 i~~~~~~--------g~~~~a~~l~~~M~~~g~~p~~-~ty~-----------------~ll~~~~~~g~~~~~~~~~a~ 166 (194)
-.++... |+.+.|...|+..... .|+. ..+. .+...+.+.|+ .+.|.
T Consensus 114 g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~-----~~~A~ 186 (235)
T TIGR03302 114 GLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGA-----YVAAI 186 (235)
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----hHHHH
Confidence 4455543 7789999999998765 2322 2221 33445667788 77777
Q ss_pred hhcccccc
Q 029406 167 ELFPDMIV 174 (194)
Q Consensus 167 ~~~~~m~~ 174 (194)
..++....
T Consensus 187 ~~~~~al~ 194 (235)
T TIGR03302 187 NRFETVVE 194 (235)
T ss_pred HHHHHHHH
Confidence 77666543
No 99
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.25 E-value=0.2 Score=40.88 Aligned_cols=25 Identities=16% Similarity=0.058 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVR 62 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~ 62 (194)
+.-+-..|.+-+++..|+.+|.+-.
T Consensus 259 fllLskvY~ridQP~~AL~~~~~gl 283 (478)
T KOG1129|consen 259 FLLLSKVYQRIDQPERALLVIGEGL 283 (478)
T ss_pred HHHHHHHHHHhccHHHHHHHHhhhh
Confidence 3334444444444444444444443
No 100
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.18 E-value=0.24 Score=41.52 Aligned_cols=94 Identities=13% Similarity=0.023 Sum_probs=75.2
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC-CHHhHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF-DQHTFGDIIRA 115 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~ 115 (194)
....+...+...++-.+|++++++..+ ..+-|....+.--..|.+.++++.|+.+..++... .| +..+|..|..+
T Consensus 202 v~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~ 277 (395)
T PF09295_consen 202 VAVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAEC 277 (395)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHH
Confidence 344566666677888899999888862 23446666677777788999999999999999776 44 45699999999
Q ss_pred HhcCCChHHHHHHHHHhHh
Q 029406 116 FSDSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~ 134 (194)
|.+.|+++.|...++.+.-
T Consensus 278 Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 278 YIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHhcCCHHHHHHHHhcCcC
Confidence 9999999999999998753
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.17 E-value=0.55 Score=38.18 Aligned_cols=95 Identities=8% Similarity=0.035 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCC-CCCCh--hhHHHHHH
Q 029406 73 FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSP-ATPIS--LPFRVILK 149 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g-~~p~~--~ty~~ll~ 149 (194)
....+-..+...|++++|...+++..+.. +.+...+..+-..|...|++++|..+++...... ..|+. ..|..+..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 33344456677888888888888887654 3345667777788888888888888888765531 12332 34556677
Q ss_pred hhCCCCchHHhHHHHHhhhccccc
Q 029406 150 GLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 150 ~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
.+...|+ .+.|..+++...
T Consensus 195 ~~~~~G~-----~~~A~~~~~~~~ 213 (355)
T cd05804 195 FYLERGD-----YEAALAIYDTHI 213 (355)
T ss_pred HHHHCCC-----HHHHHHHHHHHh
Confidence 7778888 777777777653
No 102
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.16 E-value=0.011 Score=53.51 Aligned_cols=117 Identities=11% Similarity=0.144 Sum_probs=91.2
Q ss_pred cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHH
Q 029406 48 QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127 (194)
Q Consensus 48 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 127 (194)
.+....|+++|.+.. ...+-|.+.=|-+=-.++..|++.+|..||.+..+.... +..+|-.+-++|+..|.+..|++
T Consensus 625 kk~~~KAlq~y~kvL--~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIq 701 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVL--RNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQ 701 (1018)
T ss_pred HHHHHHHHHHHHHHH--hcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHH
Confidence 346788899998886 234446677677777778889999999999999988753 44578999999999999999999
Q ss_pred HHHHh-HhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 128 IYNEM-RSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 128 l~~~M-~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
+|+.- +...-.-+....+.|-+++-+.|. +++|.+.+...
T Consensus 702 mYe~~lkkf~~~~~~~vl~~Lara~y~~~~-----~~eak~~ll~a 742 (1018)
T KOG2002|consen 702 MYENCLKKFYKKNRSEVLHYLARAWYEAGK-----LQEAKEALLKA 742 (1018)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHhhh-----HHHHHHHHHHH
Confidence 99985 444544667788888899888888 77777765443
No 103
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.12 E-value=0.18 Score=47.97 Aligned_cols=141 Identities=14% Similarity=0.069 Sum_probs=104.4
Q ss_pred hHHHHHHHHhhhhchhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 029406 21 RFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP---DMFFYRDMLMMLARNKKVVEAKQVWEDL 97 (194)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~l~~~m 97 (194)
.+.+.+.+. +-+.-.+..-|..+...++++.|.++++...+.-+++- -.-.|.++++.-...|.-+...++|++.
T Consensus 1446 Dferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1446 DFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 344444443 33345577788888899999999999999874433332 2458899999999999889999999988
Q ss_pred HhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccc
Q 029406 98 KREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 98 ~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~ 171 (194)
.+.. --...|..|...|-+.+.+++|.++|+.|.++ +.-....|...+..+.+..+ .+.|+++++.
T Consensus 1524 cqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne-----~~aa~~lL~r 1589 (1710)
T KOG1070|consen 1524 CQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNE-----AEAARELLKR 1589 (1710)
T ss_pred HHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccH-----HHHHHHHHHH
Confidence 7664 12457999999999999999999999999776 22445778888888887776 5555555443
No 104
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.10 E-value=0.15 Score=37.07 Aligned_cols=91 Identities=10% Similarity=-0.008 Sum_probs=70.6
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC
Q 029406 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLA-RNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 119 (194)
+-..+...|++++|..+|..... +.|....|-.=+.+|+ ..|++++|+..|......... |...+-.+-.++...
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~l 116 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHc
Confidence 34445678999999999999973 5566555544444444 469999999999988877643 778888888999999
Q ss_pred CChHHHHHHHHHhHhC
Q 029406 120 GLPSEAMFIYNEMRSS 135 (194)
Q Consensus 120 g~~~~a~~l~~~M~~~ 135 (194)
|+.+.|...|+.....
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987654
No 105
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.06 E-value=0.055 Score=44.45 Aligned_cols=132 Identities=13% Similarity=0.140 Sum_probs=90.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHH-HHHHHhc
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGD-IIRAFSD 118 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~-li~~~~~ 118 (194)
++-.++.-..++++.+..+...+ ..-..-|.+.|| +-.+++..|.+.+|.++|-......++ |..+|.+ |.++|.+
T Consensus 364 smAs~fFL~~qFddVl~YlnSi~-sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLTYLNSIE-SYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIR 440 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHh
Confidence 34444555556777777777777 566666666666 446777889999999999988766666 5666655 5578899
Q ss_pred CCChHHHHHHHHHhHhCCCCCCh-hhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCchhhh
Q 029406 119 SGLPSEAMFIYNEMRSSPATPIS-LPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPEDLF 182 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~g~~p~~-~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~~~ 182 (194)
++....|++++-.|-.. .+. .....+.+.|-+.++ .--|-+.|+.+...+|+++--
T Consensus 441 nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~e-----FyyaaKAFd~lE~lDP~pEnW 497 (557)
T KOG3785|consen 441 NKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKANE-----FYYAAKAFDELEILDPTPENW 497 (557)
T ss_pred cCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHH-----HHHHHHhhhHHHccCCCcccc
Confidence 99999998877665433 233 334445566777777 666666677777777777643
No 106
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.02 E-value=1.1 Score=40.44 Aligned_cols=106 Identities=9% Similarity=-0.050 Sum_probs=81.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
...+...+.+.+++++|...++... + ..|+ ....+.+=.++.+.|.+++|..+|++....+ +-+..++..+-.++
T Consensus 123 ~~~~a~~L~~~~~~eeA~~~~~~~l-~--~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l 198 (694)
T PRK15179 123 FILMLRGVKRQQGIEAGRAEIELYF-S--GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSL 198 (694)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHh-h--cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 3467788889999999999999997 2 4465 4455555667777899999999999999843 22478899999999
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHHH
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll 148 (194)
-..|+.++|...|+...+. ..|....|+-.+
T Consensus 199 ~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 199 TRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 9999999999999998664 233445555444
No 107
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.93 E-value=0.066 Score=43.53 Aligned_cols=126 Identities=11% Similarity=-0.015 Sum_probs=88.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 119 (194)
-+=.||.+.|.+.+|.+.|+.-.+ ..|-..||-.|-++|.+...+..|+.+|.+-.+. ++.|+....-+-+.+-..
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~---q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLT---QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhh---cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 467888999999999999988873 4567778888999999999999999998876543 333444445556666667
Q ss_pred CChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccccc
Q 029406 120 GLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVY 175 (194)
Q Consensus 120 g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~ 175 (194)
+..++|.++|....+. .+.+.....++..+|.-.++ .+.|...++.+.+.
T Consensus 304 ~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~-----PE~AlryYRRiLqm 353 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNN-----PEMALRYYRRILQM 353 (478)
T ss_pred HhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCC-----hHHHHHHHHHHHHh
Confidence 7888888888876554 23344455555555666666 66666666554433
No 108
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.92 E-value=0.071 Score=44.06 Aligned_cols=93 Identities=10% Similarity=-0.007 Sum_probs=74.5
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHH
Q 029406 80 MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159 (194)
Q Consensus 80 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~ 159 (194)
.+...|++++|+.+|.+..+.. +-+...|..+-.+|.+.|++++|...++...... +.+...|..+-.+|...|+
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~--- 85 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE--- 85 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC---
Confidence 4457799999999999998764 2367788999999999999999999999987652 3356778888888999999
Q ss_pred hHHHHHhhhcccccccCCch
Q 029406 160 KVKDDFLELFPDMIVYDPPE 179 (194)
Q Consensus 160 ~~~~~a~~~~~~m~~~~~~~ 179 (194)
.+.|...|+......|-.
T Consensus 86 --~~eA~~~~~~al~l~P~~ 103 (356)
T PLN03088 86 --YQTAKAALEKGASLAPGD 103 (356)
T ss_pred --HHHHHHHHHHHHHhCCCC
Confidence 888888888776655443
No 109
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.91 E-value=0.35 Score=35.15 Aligned_cols=91 Identities=9% Similarity=0.087 Sum_probs=54.8
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 39 VSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP--DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 39 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
..+...+...|++++|...|+.... ....| ...+|..+=..|...|++++|+..+.+..... +....+++.+...|
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~-l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i~ 116 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMR-LEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh-ccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 3444555567888888888877762 22111 12466666677777788888888887766542 22334455555555
Q ss_pred h-------cCCChHHHHHHHHH
Q 029406 117 S-------DSGLPSEAMFIYNE 131 (194)
Q Consensus 117 ~-------~~g~~~~a~~l~~~ 131 (194)
. +.|+++.|...+++
T Consensus 117 ~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 117 HYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHhhHHHHHcccHHHHHHHHHH
Confidence 5 66666655555543
No 110
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.91 E-value=0.16 Score=36.99 Aligned_cols=82 Identities=15% Similarity=0.037 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC--CHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHH
Q 029406 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF--DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVI 147 (194)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p--~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~l 147 (194)
-...|..+...+...|++++|+..|.+.....-.| ...+|..+-..|...|++++|...++..... .+....++..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~-~~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER-NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCcHHHHHHH
Confidence 35566777777888999999999999887653222 2357888999999999999999999987654 22234556666
Q ss_pred HHhhC
Q 029406 148 LKGLI 152 (194)
Q Consensus 148 l~~~~ 152 (194)
...+.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 55555
No 111
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.84 E-value=0.66 Score=36.36 Aligned_cols=120 Identities=16% Similarity=0.015 Sum_probs=89.7
Q ss_pred HhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHH
Q 029406 46 QRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEA 125 (194)
Q Consensus 46 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a 125 (194)
.-.|+-+.+..+..... ...+-|...-+.......+.|++.+|...|.+.... -++|..+||.+=-+|-+.|+++.|
T Consensus 77 ~~~G~a~~~l~~~~~~~--~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~A 153 (257)
T COG5010 77 YLRGDADSSLAVLQKSA--IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEA 153 (257)
T ss_pred HhcccccchHHHHhhhh--ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHH
Confidence 33555666666655553 334456666777899999999999999999998654 478999999999999999999999
Q ss_pred HHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 126 MFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 126 ~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
..-|.+..+- ..-+...+|.|.-.+.-.|+ .+.|..++..-..
T Consensus 154 r~ay~qAl~L-~~~~p~~~nNlgms~~L~gd-----~~~A~~lll~a~l 196 (257)
T COG5010 154 RRAYRQALEL-APNEPSIANNLGMSLLLRGD-----LEDAETLLLPAYL 196 (257)
T ss_pred HHHHHHHHHh-ccCCchhhhhHHHHHHHcCC-----HHHHHHHHHHHHh
Confidence 9999987665 22345566677667777788 7777777664433
No 112
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=0.44 Score=37.66 Aligned_cols=93 Identities=10% Similarity=0.084 Sum_probs=68.3
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 119 (194)
+.|....-.+.+.+|.-+|++| ..+..|+..+-|-...++...|++++|..++.......-. +..|...+|-+--..
T Consensus 178 awv~la~ggek~qdAfyifeE~--s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~ 254 (299)
T KOG3081|consen 178 AWVKLATGGEKIQDAFYIFEEL--SEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHL 254 (299)
T ss_pred HHHHHhccchhhhhHHHHHHHH--hcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHh
Confidence 4455455567899999999999 4678999999999999999999999999999999876544 344444444444444
Q ss_pred CCh-HHHHHHHHHhHhC
Q 029406 120 GLP-SEAMFIYNEMRSS 135 (194)
Q Consensus 120 g~~-~~a~~l~~~M~~~ 135 (194)
|.. +...+.+.+.+..
T Consensus 255 Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 255 GKDAEVTERNLSQLKLS 271 (299)
T ss_pred CCChHHHHHHHHHHHhc
Confidence 444 4455577776554
No 113
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.79 E-value=0.055 Score=32.67 Aligned_cols=52 Identities=12% Similarity=-0.019 Sum_probs=24.5
Q ss_pred HHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 029406 45 FQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLK 98 (194)
Q Consensus 45 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 98 (194)
+.+.|++++|...|+...+ .. +-+...+..+=.++...|++++|...|++..
T Consensus 7 ~~~~g~~~~A~~~~~~~l~-~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALK-QD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHC-CS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH-HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555541 11 1134444444445555555555555555544
No 114
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=95.76 E-value=0.23 Score=40.28 Aligned_cols=127 Identities=9% Similarity=0.034 Sum_probs=70.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD----MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
-++..|-..++|.+|+++-..+.+ .+-.+. ...|..+-..+....+++.|..++.+..+.+-+ .+..--.+=+.
T Consensus 146 qLl~IYQ~treW~KAId~A~~L~k-~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v 223 (389)
T COG2956 146 QLLNIYQATREWEKAIDVAERLVK-LGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRV 223 (389)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH-cCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHH
Confidence 355556666666666666665552 222222 223444444444455566666666655544211 22222233344
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccc
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
+...|++..|.+.++...+.+-.--+.+...|..+|.+.|+ .+....++..+.
T Consensus 224 ~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~-----~~~~~~fL~~~~ 276 (389)
T COG2956 224 ELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK-----PAEGLNFLRRAM 276 (389)
T ss_pred HHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHHH
Confidence 55667777777777777665433345667777788888888 776666666554
No 115
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.75 E-value=0.041 Score=43.91 Aligned_cols=101 Identities=13% Similarity=0.164 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHH
Q 029406 71 MFFYRDMLMMLARNKKVVEAKQVWEDLKREE-VLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILK 149 (194)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~ 149 (194)
+.+|..+|+.+-+.+..+.|..+|.+..+.+ +..+.....+.|.-+ ..++.+.|..+|+...+. +.-+...|..-++
T Consensus 1 t~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 1 TLVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 3578999999999999999999999998654 445555555555443 356778899999998765 5667778888888
Q ss_pred hhCCCCchHHhHHHHHhhhcccccccCCc
Q 029406 150 GLIPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 150 ~~~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
-+...|+ .+.++.+|+.....-++
T Consensus 79 ~l~~~~d-----~~~aR~lfer~i~~l~~ 102 (280)
T PF05843_consen 79 FLIKLND-----INNARALFERAISSLPK 102 (280)
T ss_dssp HHHHTT------HHHHHHHHHHHCCTSSC
T ss_pred HHHHhCc-----HHHHHHHHHHHHHhcCc
Confidence 8889999 88899998876655333
No 116
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=95.74 E-value=0.24 Score=43.11 Aligned_cols=104 Identities=10% Similarity=0.009 Sum_probs=44.1
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH----h--CCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLA----R--NKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~--~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
--..+.+.|+.++|..+|..+.+ . .|+-..|...+..+. . ....+....+++++... -|.....-.+.-
T Consensus 44 rA~ll~kLg~~~eA~~~y~~Li~-r--NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L 118 (517)
T PF12569_consen 44 RAELLLKLGRKEEAEKIYRELID-R--NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEK--YPRSDAPRRLPL 118 (517)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-H--CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHh--CccccchhHhhc
Confidence 34444555666666666655552 2 244444443333333 1 11344555555555333 133333333332
Q ss_pred HHhcCCChH-HHHHHHHHhHhCCCCCChhhHHHHHHhhC
Q 029406 115 AFSDSGLPS-EAMFIYNEMRSSPATPISLPFRVILKGLI 152 (194)
Q Consensus 115 ~~~~~g~~~-~a~~l~~~M~~~g~~p~~~ty~~ll~~~~ 152 (194)
.+.....+. .+...+..+..+|++ .+|+.|-.-|.
T Consensus 119 ~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~ 154 (517)
T PF12569_consen 119 DFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYK 154 (517)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHc
Confidence 333322332 223344445555655 34444444444
No 117
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.73 E-value=0.54 Score=40.01 Aligned_cols=152 Identities=14% Similarity=0.154 Sum_probs=106.3
Q ss_pred CchhHHHHHHHHhhhhc-hhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 029406 18 HPVRFDRFIKSHVSRLL-KSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWED 96 (194)
Q Consensus 18 ~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~ 96 (194)
..+.++-+++-+..-+. ...+..+-+.|-...+..+|++++-+.. .-++-|.....-|-..|-+-|+-.+|.+.+-.
T Consensus 540 ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~--slip~dp~ilskl~dlydqegdksqafq~~yd 617 (840)
T KOG2003|consen 540 LDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN--SLIPNDPAILSKLADLYDQEGDKSQAFQCHYD 617 (840)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc--ccCCCCHHHHHHHHHHhhcccchhhhhhhhhh
Confidence 34455555555543222 2445566677777788888988887774 55666788888899999999999999887654
Q ss_pred HHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhC-CCCchHHhHHHHHhhhccccccc
Q 029406 97 LKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI-PYPEFREKVKDDFLELFPDMIVY 175 (194)
Q Consensus 97 m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~-~~g~~~~~~~~~a~~~~~~m~~~ 175 (194)
--+ =++-|..|..=|-.-|....-.++++..|+.. .=+.|+..-|..++-.|. +.|+ .+.|++++.+.+.
T Consensus 618 syr-yfp~nie~iewl~ayyidtqf~ekai~y~eka--aliqp~~~kwqlmiasc~rrsgn-----yqka~d~yk~~hr- 688 (840)
T KOG2003|consen 618 SYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKA--ALIQPNQSKWQLMIASCFRRSGN-----YQKAFDLYKDIHR- 688 (840)
T ss_pred ccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHH--HhcCccHHHHHHHHHHHHHhccc-----HHHHHHHHHHHHH-
Confidence 322 14446666666666667777778888888874 235799999999997766 5677 9999999987754
Q ss_pred CCchh
Q 029406 176 DPPED 180 (194)
Q Consensus 176 ~~~~~ 180 (194)
.+|+|
T Consensus 689 kfped 693 (840)
T KOG2003|consen 689 KFPED 693 (840)
T ss_pred hCccc
Confidence 33444
No 118
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.66 E-value=0.29 Score=39.91 Aligned_cols=99 Identities=17% Similarity=0.133 Sum_probs=76.2
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
.+...|.-|...|+...|.++-...+ + |+...|-.-|.+++..+++++..++-.. . -+..-|-..+..|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v-~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~ 247 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----V-PDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEAC 247 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHH
Confidence 34456777888898888888766664 3 8999999999999999999988776432 1 1347799999999
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCc
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~ 156 (194)
.+.|...+|..+... .++.--+..|.++|+
T Consensus 248 ~~~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~ 277 (319)
T PF04840_consen 248 LKYGNKKEASKYIPK----------IPDEERVEMYLKCGD 277 (319)
T ss_pred HHCCCHHHHHHHHHh----------CChHHHHHHHHHCCC
Confidence 999999999888777 223555666777777
No 119
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.55 E-value=0.1 Score=46.71 Aligned_cols=114 Identities=11% Similarity=0.142 Sum_probs=86.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+...|.+-...+.|..|+.+++.++. .+..+.-|..+-..|+..|+++.|.++|-+- ..|+-.|..|.
T Consensus 735 ~~kaieaai~akew~kai~ildniqd---qk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~ 802 (1636)
T KOG3616|consen 735 LIKAIEAAIGAKEWKKAISILDNIQD---QKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYG 802 (1636)
T ss_pred HHHHHHHHhhhhhhhhhHhHHHHhhh---hccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHh
Confidence 34556667778899999999999973 2345667889999999999999999999743 25788899999
Q ss_pred cCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcc
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFP 170 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~ 170 (194)
++|++..|..+-.+-. |-......|-+-..-+-+.|. ..+|.+++-
T Consensus 803 k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgk-----f~eaeqlyi 848 (1636)
T KOG3616|consen 803 KAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGK-----FAEAEQLYI 848 (1636)
T ss_pred ccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcc-----hhhhhheeE
Confidence 9999999998876643 333455667666666777777 666666654
No 120
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=95.55 E-value=0.33 Score=39.48 Aligned_cols=121 Identities=7% Similarity=-0.089 Sum_probs=81.0
Q ss_pred HHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHH---HHHHHHhCCCHHHHHHHHHHHHhcCCCCC-HHhHHHHHHHHhcCC
Q 029406 45 FQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRD---MLMMLARNKKVVEAKQVWEDLKREEVLFD-QHTFGDIIRAFSDSG 120 (194)
Q Consensus 45 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~---li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g 120 (194)
+...|+++.|.++++.... . .+.|...++. ........+....+.+.+.. ..+..|+ ......+-..+...|
T Consensus 53 ~~~~g~~~~A~~~~~~~l~-~-~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 53 AWIAGDLPKALALLEQLLD-D-YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHcCCHHHHHHHHHHHHH-H-CCCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcC
Confidence 3457999999999999873 2 2334444442 22222234555666665554 2223333 344556667888999
Q ss_pred ChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccccc
Q 029406 121 LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVY 175 (194)
Q Consensus 121 ~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~ 175 (194)
++++|...++...+.. +.+...+..+-..+...|+ .++|..+++.....
T Consensus 129 ~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~-----~~eA~~~l~~~l~~ 177 (355)
T cd05804 129 QYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR-----FKEGIAFMESWRDT 177 (355)
T ss_pred CHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC-----HHHHHHHHHhhhhc
Confidence 9999999999987763 4456778888888999999 88888888765543
No 121
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=95.52 E-value=1.5 Score=38.23 Aligned_cols=144 Identities=10% Similarity=0.020 Sum_probs=100.8
Q ss_pred hHHHHHHHHhhhhchhhHHHHHHHHHhcCCHhHHHHHHHHHHhhc-------------CCCCCHH--HHHHHHHHHHhCC
Q 029406 21 RFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEI-------------WYRPDMF--FYRDMLMMLARNK 85 (194)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-------------~~~p~~~--~~~~li~~~~~~g 85 (194)
.+...+.....+..++.+..|-..|....+..-..+++....... .-.|... ++.-+=..|-..|
T Consensus 129 ~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g 208 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLG 208 (517)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhC
Confidence 455555666666666666666666665555555566666654211 1235553 4455566788899
Q ss_pred CHHHHHHHHHHHHhcCCCCC-HHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHH
Q 029406 86 KVVEAKQVWEDLKREEVLFD-QHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDD 164 (194)
Q Consensus 86 ~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~ 164 (194)
++++|+.+.++..++ .|+ +..|..--..|-+.|++.+|...++..++-. .-|...-+-....+.+.|+ .+.
T Consensus 209 ~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~-----~e~ 280 (517)
T PF12569_consen 209 DYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGR-----IEE 280 (517)
T ss_pred CHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCC-----HHH
Confidence 999999999988877 354 6678888899999999999999999887653 3466677777777778898 888
Q ss_pred Hhhhcccc
Q 029406 165 FLELFPDM 172 (194)
Q Consensus 165 a~~~~~~m 172 (194)
|.+++..-
T Consensus 281 A~~~~~~F 288 (517)
T PF12569_consen 281 AEKTASLF 288 (517)
T ss_pred HHHHHHhh
Confidence 87775543
No 122
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.47 E-value=0.28 Score=43.24 Aligned_cols=130 Identities=10% Similarity=0.175 Sum_probs=88.0
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC-HHhHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFD-QHTFGDII 113 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li 113 (194)
..+..+-.++-..|++.+|...|..-.. +.|+ ....+-|=..|...|.+++|..+|....+- .|. ...+|.|-
T Consensus 321 ~Ay~NlanALkd~G~V~ea~~cYnkaL~---l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa 395 (966)
T KOG4626|consen 321 DAYNNLANALKDKGSVTEAVDCYNKALR---LCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLA 395 (966)
T ss_pred HHHhHHHHHHHhccchHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHH
Confidence 4466777777778888888888888762 3444 556777888888888888888888766543 333 34678888
Q ss_pred HHHhcCCChHHHHHHHHHhHhCCCCCC-hhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 114 RAFSDSGLPSEAMFIYNEMRSSPATPI-SLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~M~~~g~~p~-~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
..|-..|++++|..+|++... +.|+ ...|+.+=+.|-..|+ .+.|...+...+..+|
T Consensus 396 ~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~-----v~~A~q~y~rAI~~nP 453 (966)
T KOG4626|consen 396 SIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGD-----VSAAIQCYTRAIQINP 453 (966)
T ss_pred HHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhh-----HHHHHHHHHHHHhcCc
Confidence 888888888888888877543 4555 3456666566666666 5555555554444443
No 123
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.33 E-value=0.79 Score=36.41 Aligned_cols=138 Identities=12% Similarity=0.120 Sum_probs=100.3
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR- 114 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~- 114 (194)
+.+.+++.++.-.|.+.-.+.++.+.. ....+.++.....|.+.-.+.|+.+.|...|+...+..-+.|..+++.++.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi-~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVI-KYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHH-HhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 445567777777889999999999998 466667888889999999999999999999998887666666666666654
Q ss_pred ----HHhcCCChHHHHHHHHHhHhC-CCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCchhh
Q 029406 115 ----AFSDSGLPSEAMFIYNEMRSS-PATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPEDL 181 (194)
Q Consensus 115 ----~~~~~g~~~~a~~l~~~M~~~-g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~~ 181 (194)
.|.-.+++..|...|.+.... .-.|-...-.+|+..|- |+ ...|.+.++.|....|.+..
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYl--g~-----l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYL--GK-----LKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHH--HH-----HHHHHHHHHHHhccCCccch
Confidence 345557888888888876554 22344444455555553 56 67777777777766666543
No 124
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.31 E-value=0.15 Score=30.68 Aligned_cols=56 Identities=16% Similarity=0.120 Sum_probs=47.8
Q ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 79 MMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 79 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
..+.+.|++++|..+|++..+.. +-+...+..+-.++...|++++|...|+...+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56778999999999999998876 337778999999999999999999999998654
No 125
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.27 E-value=0.49 Score=43.00 Aligned_cols=120 Identities=17% Similarity=0.112 Sum_probs=79.2
Q ss_pred hcCCHhHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHH
Q 029406 47 RQDQVFLCMKLYDVVRKEIWYRP--DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSE 124 (194)
Q Consensus 47 ~~~~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 124 (194)
+-+..+....+..... .....| +...|.-+-++|...|++.+|+.+|..+.....--+...|--+-.+|...|.++.
T Consensus 389 ~L~~~e~~e~ll~~l~-~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 389 HLKERELLEALLHFLV-EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred cccccchHHHHHHHHH-HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 3333344444444443 333333 4556777888888888999999999888876544467788888899999999999
Q ss_pred HHHHHHHhHhCCCCCC-hhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 125 AMFIYNEMRSSPATPI-SLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 125 a~~l~~~M~~~g~~p~-~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
|...|...... .|+ .-.--.|-..+-+.|+ .++|.+.+..|..
T Consensus 468 A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~-----~EkalEtL~~~~~ 511 (895)
T KOG2076|consen 468 AIEFYEKVLIL--APDNLDARITLASLYQQLGN-----HEKALETLEQIIN 511 (895)
T ss_pred HHHHHHHHHhc--CCCchhhhhhHHHHHHhcCC-----HHHHHHHHhcccC
Confidence 99988887654 222 2222223334566777 7788888887663
No 126
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.17 E-value=0.49 Score=43.05 Aligned_cols=121 Identities=8% Similarity=0.028 Sum_probs=90.6
Q ss_pred HHHHhcCC--chhHHHHHHHHhhhhch--hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCC
Q 029406 11 ELKRLQSH--PVRFDRFIKSHVSRLLK--SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKK 86 (194)
Q Consensus 11 ~l~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 86 (194)
+|-+++.. ++.+..++......+.. .-+..+-++|...|++++|+.+|..+.+ ...--+...|--+=.+|-..|.
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~-~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN-REGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc-CccccchhhhHHHHHHHHHHhh
Confidence 34444443 34555555555433332 2356788999999999999999999984 4444458899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhH
Q 029406 87 VVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133 (194)
Q Consensus 87 ~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~ 133 (194)
.++|.+.|....... +-+...-.+|-..+-+.|+.++|.+.++.|.
T Consensus 465 ~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999999987652 2244456677778889999999999999986
No 127
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.05 E-value=0.19 Score=44.01 Aligned_cols=127 Identities=14% Similarity=0.100 Sum_probs=75.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHH---H
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDI---I 113 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~l---i 113 (194)
+-++=++|+-+++.+.|++.|+.-. + +.| ..++||.+=.=+.....+|.|...|+.... .|...||+. -
T Consensus 424 Wca~GNcfSLQkdh~~Aik~f~RAi-Q--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~~rhYnAwYGlG 496 (638)
T KOG1126|consen 424 WCALGNCFSLQKDHDTAIKCFKRAI-Q--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----VDPRHYNAWYGLG 496 (638)
T ss_pred HHHhcchhhhhhHHHHHHHHHHHhh-c--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc----CCchhhHHHHhhh
Confidence 3355566777889999999888775 3 445 567777665556666667777777765433 345555543 3
Q ss_pred HHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 114 RAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
-.|.|.+.++.|.-.|+...+-+ +-+.+.-..+-..+-+.|+ .++|.++++...+-+|
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~-----~d~AL~~~~~A~~ld~ 554 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKR-----KDKALQLYEKAIHLDP 554 (638)
T ss_pred hheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhh-----hhHHHHHHHHHHhcCC
Confidence 45667777777777776654432 2233333344444445555 6666666665544443
No 128
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.05 E-value=1 Score=35.67 Aligned_cols=99 Identities=10% Similarity=-0.015 Sum_probs=59.0
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCCCHHhHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREE--VLFDQHTFGDII 113 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p~~~ty~~li 113 (194)
+|...+..+.+.|++++|...|+.+.+...-.+ ....+.-+=.+|...|++++|...|..+...- -......+-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344455555566788888888888763221111 01344556666777788888888888776431 111223344445
Q ss_pred HHHhcCCChHHHHHHHHHhHhC
Q 029406 114 RAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
..|...|+.+.|..+|+...+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 5566778888888877776554
No 129
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.03 E-value=0.6 Score=37.73 Aligned_cols=99 Identities=9% Similarity=0.025 Sum_probs=72.2
Q ss_pred HhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC--C-----------CH------
Q 029406 46 QRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVL--F-----------DQ------ 106 (194)
Q Consensus 46 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~--p-----------~~------ 106 (194)
.+.|+++.|++-|+.-..-.|+. ....||..+..| +.|+...|+++..++.++|++ | |+
T Consensus 155 ykegqyEaAvqkFqaAlqvsGyq-pllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt 232 (459)
T KOG4340|consen 155 YKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNT 232 (459)
T ss_pred eccccHHHHHHHHHHHHhhcCCC-chhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccch
Confidence 46899999999999988445555 466788888887 667899999999999988865 2 11
Q ss_pred ---------HhHHHHHHHHhcCCChHHHHHHHHHhHhC-CCCCChhhHHH
Q 029406 107 ---------HTFGDIIRAFSDSGLPSEAMFIYNEMRSS-PATPISLPFRV 146 (194)
Q Consensus 107 ---------~ty~~li~~~~~~g~~~~a~~l~~~M~~~-g~~p~~~ty~~ 146 (194)
..||.=...+.+.|+++.|.+.+-+|.-+ ....|+.|...
T Consensus 233 ~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN 282 (459)
T KOG4340|consen 233 LVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHN 282 (459)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhH
Confidence 23444455567889999999999998532 33455555443
No 130
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.01 E-value=1.3 Score=34.86 Aligned_cols=124 Identities=13% Similarity=0.062 Sum_probs=82.2
Q ss_pred HhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHH
Q 029406 46 QRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEA 125 (194)
Q Consensus 46 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a 125 (194)
...++.+.|...++.++.+..--+.+.-...| .+-..|+.++|.++++.+.+.. +.|.++|--=+...-..|.--.|
T Consensus 63 ld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~a 139 (289)
T KOG3060|consen 63 LDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEA 139 (289)
T ss_pred HHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHH
Confidence 35678888888888887433111222222222 1234578888888888887766 66777777666666666666677
Q ss_pred HHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCc
Q 029406 126 MFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 126 ~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
++-+..-.+. +..|...|.-+-..|...|+ ++.|.-.++++.-..|.
T Consensus 140 Ik~ln~YL~~-F~~D~EAW~eLaeiY~~~~~-----f~kA~fClEE~ll~~P~ 186 (289)
T KOG3060|consen 140 IKELNEYLDK-FMNDQEAWHELAEIYLSEGD-----FEKAAFCLEELLLIQPF 186 (289)
T ss_pred HHHHHHHHHH-hcCcHHHHHHHHHHHHhHhH-----HHHHHHHHHHHHHcCCC
Confidence 7766666555 67788888888888887777 77777777776544443
No 131
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.80 E-value=0.92 Score=31.83 Aligned_cols=86 Identities=8% Similarity=0.124 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
...++..+...+.+.....+++++. ..+ ..+...+|.+|..|++.. ..+.+.++.. .++......+++.|-
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~-~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESAL-KLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH-ccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHH
Confidence 4467777777788888888888887 344 367778888888888764 4445555552 123333455777777
Q ss_pred cCCChHHHHHHHHHh
Q 029406 118 DSGLPSEAMFIYNEM 132 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M 132 (194)
+.+.++.+.-++..+
T Consensus 81 ~~~l~~~~~~l~~k~ 95 (140)
T smart00299 81 KAKLYEEAVELYKKD 95 (140)
T ss_pred HcCcHHHHHHHHHhh
Confidence 777777777777665
No 132
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=94.76 E-value=0.42 Score=37.85 Aligned_cols=102 Identities=8% Similarity=0.052 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCH----HhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhh---
Q 029406 71 MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ----HTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLP--- 143 (194)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~t--- 143 (194)
...|...+..+.+.|++++|...|..+...- |+. ..+--+-..|...|+++.|...|..+.+. ++-+...
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~-yP~s~~~~dA 219 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN-YPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCCcchhHH
Confidence 5578888887788899999999999998652 332 35667788889999999999999999765 2222222
Q ss_pred HHHHHHhhCCCCchHHhHHHHHhhhcccccccCCchh
Q 029406 144 FRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180 (194)
Q Consensus 144 y~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~ 180 (194)
+--+...+...|+ .+.|..+++.....-|-.+
T Consensus 220 l~klg~~~~~~g~-----~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 220 MFKVGVIMQDKGD-----TAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHcCC-----HHHHHHHHHHHHHHCcCCH
Confidence 3333445667888 8999999987765444333
No 133
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.75 E-value=0.11 Score=32.54 Aligned_cols=61 Identities=16% Similarity=0.126 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhc----C-CCCC-HHhHHHHHHHHhcCCChHHHHHHHHHh
Q 029406 72 FFYRDMLMMLARNKKVVEAKQVWEDLKRE----E-VLFD-QHTFGDIIRAFSDSGLPSEAMFIYNEM 132 (194)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g-~~p~-~~ty~~li~~~~~~g~~~~a~~l~~~M 132 (194)
.+|+.+=..|...|++++|+..|++.... | -.|+ ..+++.+-.+|...|++++|...+++-
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35566666667777777777777665532 1 1122 456777777777777777777777653
No 134
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.74 E-value=0.34 Score=29.70 Aligned_cols=53 Identities=17% Similarity=0.057 Sum_probs=26.5
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhH
Q 029406 80 MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133 (194)
Q Consensus 80 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~ 133 (194)
.|.+.+++++|..+++.+...+ +.+...|...-.+|.+.|+++.|...|+...
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3445555555555555554442 2234444445555555555555555555544
No 135
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=94.50 E-value=1.7 Score=37.78 Aligned_cols=125 Identities=13% Similarity=0.079 Sum_probs=97.4
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHH-HHHhcCCCCCHHhHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWE-DLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~-~m~~~g~~p~~~ty~~li~ 114 (194)
.+...|+..-+..-+..|..+|...+ ..+..+ .++.++++|..||. ++..-|.++|+ -|+..|-. ..--...+.
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR-~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~--p~yv~~Yld 443 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAR-EDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDS--PEYVLKYLD 443 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHh-hccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCC--hHHHHHHHH
Confidence 35567777778888999999999999 466666 89999999999974 56889999998 45555533 233456777
Q ss_pred HHhcCCChHHHHHHHHHhHhCCCCCCh--hhHHHHHHhhCCCCchHHhHHHHHhhhcc
Q 029406 115 AFSDSGLPSEAMFIYNEMRSSPATPIS--LPFRVILKGLIPYPEFREKVKDDFLELFP 170 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~g~~p~~--~ty~~ll~~~~~~g~~~~~~~~~a~~~~~ 170 (194)
-++..|+-..+..+|+....++..||. ..|.-+|.--+.-|+ +..+.++.+
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd-----L~si~~lek 496 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD-----LNSILKLEK 496 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc-----HHHHHHHHH
Confidence 788889999999999999888777764 789999988888888 655555543
No 136
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=94.50 E-value=1.8 Score=36.04 Aligned_cols=109 Identities=17% Similarity=0.117 Sum_probs=81.4
Q ss_pred hHHHHHHHHhhhhchhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 029406 21 RFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100 (194)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 100 (194)
...+++.+...+..+..+ ..+-.+.+.++...-++..++-.++++..| -.+.+|=..|.+++.+.+|...|+.. -
T Consensus 281 ~A~~~i~~~Lk~~~D~~L-~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaA--l 355 (400)
T COG3071 281 EAQEIIEDALKRQWDPRL-CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAA--L 355 (400)
T ss_pred HHHHHHHHHHHhccChhH-HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHH--H
Confidence 444455555555555443 333345566777777777777665777777 56677778899999999999999944 4
Q ss_pred CCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHh
Q 029406 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 101 g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~ 134 (194)
...|+..+|+-+-.+|-+.|+...|.+++++-..
T Consensus 356 ~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 356 KLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4589999999999999999999999999988643
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=94.25 E-value=3.1 Score=35.57 Aligned_cols=89 Identities=12% Similarity=0.116 Sum_probs=72.6
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhc
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 118 (194)
...+.+.+.++.++|.+.++.+.. ..|+ ....-.+=.+|.+.|.+.+|..+++...... +-|...|..|-.+|..
T Consensus 345 ~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~ 420 (484)
T COG4783 345 LAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAE 420 (484)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHH
Confidence 456677889999999999999974 4566 5566667788999999999999999886653 4588899999999999
Q ss_pred CCChHHHHHHHHHh
Q 029406 119 SGLPSEAMFIYNEM 132 (194)
Q Consensus 119 ~g~~~~a~~l~~~M 132 (194)
.|+..++..-..++
T Consensus 421 ~g~~~~a~~A~AE~ 434 (484)
T COG4783 421 LGNRAEALLARAEG 434 (484)
T ss_pred hCchHHHHHHHHHH
Confidence 99988887766654
No 138
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.16 E-value=2.1 Score=33.24 Aligned_cols=128 Identities=9% Similarity=-0.049 Sum_probs=80.4
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCCCHHhHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREE-VLFDQHTFGDII 113 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~ty~~li 113 (194)
..+..+-..|.+.|..+.|.+-|..-.+ +.|+ ...-|-.=.-+|..|.+++|.+-|++..... +.--..||..+-
T Consensus 70 ~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G 146 (250)
T COG3063 70 LAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLG 146 (250)
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhH
Confidence 3445566667777888888888877753 3343 3334444445677778888888888776544 333445777777
Q ss_pred HHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 114 RAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
-|-.+.|..+.|...|..-.+.. +-...+.-.+.+...+.|+ .-.|.-+++..
T Consensus 147 ~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~-----y~~Ar~~~~~~ 199 (250)
T COG3063 147 LCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGD-----YAPARLYLERY 199 (250)
T ss_pred HHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhccc-----chHHHHHHHHH
Confidence 77778888888888887765541 1123455555566666666 55555555444
No 139
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=94.14 E-value=1.1 Score=31.11 Aligned_cols=88 Identities=16% Similarity=-0.027 Sum_probs=54.2
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC----HHhHHHHHHH
Q 029406 42 LAEFQRQDQVFLCMKLYDVVRKEIWYRPD--MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFD----QHTFGDIIRA 115 (194)
Q Consensus 42 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~----~~ty~~li~~ 115 (194)
-..+-..|+.++|+.+|+.-. ..|.... ...+-.+=..+...|++++|+.+|++....- |+ ......+--+
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al-~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRAL-AAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 344555688888888888887 5565544 2344445556667788888888888776541 22 1112222335
Q ss_pred HhcCCChHHHHHHHHHh
Q 029406 116 FSDSGLPSEAMFIYNEM 132 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M 132 (194)
+...|+.++|+..+-..
T Consensus 85 L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 66778888887766554
No 140
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=94.07 E-value=1.7 Score=40.34 Aligned_cols=96 Identities=14% Similarity=0.230 Sum_probs=73.0
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 35 KSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 35 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
....+.+++.+....++.....+++.|. . ..-+...+..+-.+|-+.|+.++|.++|+++.+.. +-|..+.|-+-.
T Consensus 83 ~~~lv~~l~~~~~~~~~~~ve~~~~~i~-~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY 158 (906)
T PRK14720 83 DSNLLNLIDSFSQNLKWAIVEHICDKIL-L--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLAT 158 (906)
T ss_pred hhhhhhhhhhcccccchhHHHHHHHHHH-h--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHH
Confidence 3344466666666777766666666665 2 33445577778888889999999999999999987 448889999999
Q ss_pred HHhcCCChHHHHHHHHHhHhC
Q 029406 115 AFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~ 135 (194)
.|+.. +.++|..++......
T Consensus 159 ~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 159 SYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHh-hHHHHHHHHHHHHHH
Confidence 99999 999999988876543
No 141
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=93.98 E-value=0.42 Score=43.84 Aligned_cols=130 Identities=12% Similarity=0.130 Sum_probs=96.8
Q ss_pred hhHHHHHH-HHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhC------------CCHHHHHHHHHHHHhcCC
Q 029406 36 SDLVSVLA-EFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARN------------KKVVEAKQVWEDLKREEV 102 (194)
Q Consensus 36 ~~~~~ll~-~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~------------g~~~~a~~l~~~m~~~g~ 102 (194)
++-.+++- .+.+...|..|.+-|....++....+|+++.-+|=+.|.+. +..++|+++|.+..+..
T Consensus 564 p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d- 642 (1018)
T KOG2002|consen 564 PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND- 642 (1018)
T ss_pred cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-
Confidence 33446666 66677888888887777765555557888777766655542 35788999999887764
Q ss_pred CCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 103 LFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 103 ~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
+-|...=|-+--.++..|++..|.++|.+.++... -...+|-.|.++|...|+ +..|.+.|+..
T Consensus 643 pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~q-----y~~AIqmYe~~ 706 (1018)
T KOG2002|consen 643 PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQ-----YRLAIQMYENC 706 (1018)
T ss_pred cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHH-----HHHHHHHHHHH
Confidence 33666677788888999999999999999998743 345678888899998898 77778777763
No 142
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.93 E-value=0.66 Score=37.44 Aligned_cols=97 Identities=9% Similarity=0.185 Sum_probs=66.8
Q ss_pred CHhHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHhCCC----HHHHHHHHHHHHhcCCCCCH--HhHHHHHHHHhcCCC
Q 029406 50 QVFLCMKLYDVVRKEIWYRP--DMFFYRDMLMMLARNKK----VVEAKQVWEDLKREEVLFDQ--HTFGDIIRAFSDSGL 121 (194)
Q Consensus 50 ~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~----~~~a~~l~~~m~~~g~~p~~--~ty~~li~~~~~~g~ 121 (194)
.+..|..+|+.|++.+..-. +-..+..||.. ..+. .+.+..+|+.+...|+..+. +..+.++..+-....
T Consensus 118 ~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~ 195 (297)
T PF13170_consen 118 IIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQ 195 (297)
T ss_pred HHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccch
Confidence 45778999999997666654 44555566544 4444 46778899999998877533 344444444333332
Q ss_pred --hHHHHHHHHHhHhCCCCCChhhHHHHH
Q 029406 122 --PSEAMFIYNEMRSSPATPISLPFRVIL 148 (194)
Q Consensus 122 --~~~a~~l~~~M~~~g~~p~~~ty~~ll 148 (194)
+.++..+++.++++|+++....|..+-
T Consensus 196 ~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 196 EKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 347889999999999998888777553
No 143
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=93.92 E-value=0.92 Score=33.00 Aligned_cols=96 Identities=8% Similarity=0.004 Sum_probs=73.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCC
Q 029406 74 YRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIP 153 (194)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~ 153 (194)
...+=..+...|++++|..+|......... +..-|-.|=.+|-..|++.+|+..|.....-. +-|+..|-.+-.++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 334444556889999999999998776433 55666777777778899999999999987664 3456777777788889
Q ss_pred CCchHHhHHHHHhhhcccccccC
Q 029406 154 YPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 154 ~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
.|+ .+.|.+.|+....+.
T Consensus 116 lG~-----~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 116 CDN-----VCYAIKALKAVVRIC 133 (157)
T ss_pred cCC-----HHHHHHHHHHHHHHh
Confidence 999 888888888765443
No 144
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=93.92 E-value=0.55 Score=28.41 Aligned_cols=58 Identities=12% Similarity=0.099 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCC-ChHHHHHHHHH
Q 029406 73 FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG-LPSEAMFIYNE 131 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g-~~~~a~~l~~~ 131 (194)
.|..+=..+...|++++|+..|.+..+.. +-+...|..+-.+|.+.| ++++|...|+.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 33334444444555555555555444432 113344444444555555 35555554444
No 145
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=93.89 E-value=2.8 Score=33.63 Aligned_cols=139 Identities=15% Similarity=0.116 Sum_probs=97.4
Q ss_pred HHhhhhchhhHHHHHHHHHh----------------cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhC-CC-HHH
Q 029406 28 SHVSRLLKSDLVSVLAEFQR----------------QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARN-KK-VVE 89 (194)
Q Consensus 28 ~~~~~~~~~~~~~ll~~~~~----------------~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~-~~~ 89 (194)
++..++-+.|++.+++.+.. +..+.+|+.+|+...-+..+--|..+...+++..... +. ...
T Consensus 105 s~g~~Lt~~Dli~FL~~~i~~~~~~k~~~Y~~LVk~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~a 184 (292)
T PF13929_consen 105 SMGCELTKEDLISFLKLVIINLSSNKSFNYWDLVKRNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNA 184 (292)
T ss_pred HcCCCCcHHHHHHHHHHHHhccccccchHHHHHHHhhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhh
Confidence 34455556777777666332 2334556666664421123667888888888888872 22 222
Q ss_pred HHHHHHHHH-hcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC-CCCCChhhHHHHHHhhCCCCchHHhHHHHHhh
Q 029406 90 AKQVWEDLK-REEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS-PATPISLPFRVILKGLIPYPEFREKVKDDFLE 167 (194)
Q Consensus 90 a~~l~~~m~-~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~-g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~ 167 (194)
-.++.+-+. ..|-.++..+...+|..+++.+++.+-++++..-... +..-|...|..+|+...+.|+ ......
T Consensus 185 lYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD-----~~~~~k 259 (292)
T PF13929_consen 185 LYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGD-----QEVMRK 259 (292)
T ss_pred HHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCC-----HHHHHH
Confidence 233444444 3457788999999999999999999999999887554 666799999999999999999 777777
Q ss_pred hccc
Q 029406 168 LFPD 171 (194)
Q Consensus 168 ~~~~ 171 (194)
+.++
T Consensus 260 iI~~ 263 (292)
T PF13929_consen 260 IIDD 263 (292)
T ss_pred HhhC
Confidence 7655
No 146
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.75 E-value=0.91 Score=38.91 Aligned_cols=84 Identities=12% Similarity=0.118 Sum_probs=65.3
Q ss_pred hcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHH
Q 029406 47 RQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126 (194)
Q Consensus 47 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~ 126 (194)
..|++..|.++|+...+ ..|+...|++.|+.=.+-+..+.|..++....-- .|++.+|--...-=-++|.+..+.
T Consensus 153 ~LgNi~gaRqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HhcccHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHH
Confidence 45778888888877652 6688888888888888888888888888877654 488888888888888888888888
Q ss_pred HHHHHhHhC
Q 029406 127 FIYNEMRSS 135 (194)
Q Consensus 127 ~l~~~M~~~ 135 (194)
.+|....+.
T Consensus 228 ~VyerAie~ 236 (677)
T KOG1915|consen 228 SVYERAIEF 236 (677)
T ss_pred HHHHHHHHH
Confidence 888776543
No 147
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=93.74 E-value=1.4 Score=40.29 Aligned_cols=111 Identities=11% Similarity=0.049 Sum_probs=82.2
Q ss_pred hhHHHHHHHHH--hcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHH
Q 029406 36 SDLVSVLAEFQ--RQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113 (194)
Q Consensus 36 ~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li 113 (194)
..+..++.+++ +.|+.++|..+++... ..+.. |..|.-.+-..|...+..++|..+|+..... -|+......++
T Consensus 42 ~~~a~vLkaLsl~r~gk~~ea~~~Le~~~-~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lF 117 (932)
T KOG2053|consen 42 ALYAKVLKALSLFRLGKGDEALKLLEALY-GLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLF 117 (932)
T ss_pred cHHHHHHHHHHHHHhcCchhHHHHHhhhc-cCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHH
Confidence 34566777775 5799999999999987 44444 8999999999999999999999999987544 68888899999
Q ss_pred HHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhh
Q 029406 114 RAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151 (194)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~ 151 (194)
.+|+|.+++.+-.+.--+|-+. ++-+...|.++++.+
T Consensus 118 mayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Sli 154 (932)
T KOG2053|consen 118 MAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLI 154 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHH
Confidence 9999999887655544444332 333345555555443
No 148
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=93.73 E-value=1.3 Score=31.71 Aligned_cols=79 Identities=15% Similarity=0.248 Sum_probs=34.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcC---C--CCCHHhHHHHHHHHhcCCC-hHHHHHHHHHhHhCCCCCChhhHHHH
Q 029406 74 YRDMLMMLARNKKVVEAKQVWEDLKREE---V--LFDQHTFGDIIRAFSDSGL-PSEAMFIYNEMRSSPATPISLPFRVI 147 (194)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~l~~~m~~~g---~--~p~~~ty~~li~~~~~~g~-~~~a~~l~~~M~~~g~~p~~~ty~~l 147 (194)
+|+++.-.+.-+.+...+++++.+..-. + ..+..+|.+++.+.++... ---+..+|..|++.+..++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3444444444444444444444442110 0 1133345555555544444 22334455555544445555555555
Q ss_pred HHhhC
Q 029406 148 LKGLI 152 (194)
Q Consensus 148 l~~~~ 152 (194)
|+++-
T Consensus 122 i~~~l 126 (145)
T PF13762_consen 122 IKAAL 126 (145)
T ss_pred HHHHH
Confidence 55443
No 149
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.64 E-value=1.3 Score=35.33 Aligned_cols=81 Identities=14% Similarity=0.123 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHh-----CCCCCChhhHH
Q 029406 71 MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS-----SPATPISLPFR 145 (194)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~-----~g~~p~~~ty~ 145 (194)
..+++.++..+...|+++.+...+.++.... +-|...|..+|.+|.+.|+...|...|+++.+ -|+.|-..+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3456778888888899999999999888765 44888999999999999999999999998754 48888888777
Q ss_pred HHHHhhC
Q 029406 146 VILKGLI 152 (194)
Q Consensus 146 ~ll~~~~ 152 (194)
.......
T Consensus 232 ~y~~~~~ 238 (280)
T COG3629 232 LYEEILR 238 (280)
T ss_pred HHHHHhc
Confidence 7766643
No 150
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.61 E-value=2.2 Score=31.63 Aligned_cols=122 Identities=9% Similarity=0.087 Sum_probs=79.6
Q ss_pred HHHHHHhcCC-chhHHHHHHHHh----hhhchhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC--HHHHHHHHHHH
Q 029406 9 AKELKRLQSH-PVRFDRFIKSHV----SRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD--MFFYRDMLMML 81 (194)
Q Consensus 9 i~~l~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~ 81 (194)
+..+++.... .+++..-++... ..-.+..+..+-+.|++.|+.+.|.+.|..++ .....|. ...+-.+|+.+
T Consensus 5 ~~~~~~~~~~~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~-~~~~~~~~~id~~l~~irv~ 83 (177)
T PF10602_consen 5 IEETKAKNAEELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRAR-DYCTSPGHKIDMCLNVIRVA 83 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh-hhcCCHHHHHHHHHHHHHHH
Confidence 3444444333 234555554432 22234567789999999999999999999998 4544443 44667889999
Q ss_pred HhCCCHHHHHHHHHHHHhc---CCCCCH----HhHHHHHHHHhcCCChHHHHHHHHHhH
Q 029406 82 ARNKKVVEAKQVWEDLKRE---EVLFDQ----HTFGDIIRAFSDSGLPSEAMFIYNEMR 133 (194)
Q Consensus 82 ~~~g~~~~a~~l~~~m~~~---g~~p~~----~ty~~li~~~~~~g~~~~a~~l~~~M~ 133 (194)
...+++..+.....+.... |-.++. ..|..|... ..|++..|-.+|-+..
T Consensus 84 i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l--~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 84 IFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANL--AQRDFKEAAELFLDSL 140 (177)
T ss_pred HHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH--HhchHHHHHHHHHccC
Confidence 9999999998888777643 222222 233333332 3578888888877764
No 151
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.50 E-value=0.79 Score=38.94 Aligned_cols=64 Identities=8% Similarity=-0.109 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCH----HhHHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ----HTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
+...|+.+=.+|.+.|++++|+..|++..+. .|+. .+|..+-.+|...|++++|...++...+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4667888888888899999999999886655 4553 46888899999999999999988887764
No 152
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.28 E-value=3.3 Score=35.43 Aligned_cols=125 Identities=9% Similarity=-0.020 Sum_probs=94.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
++-+=+.|..-+....|.+-|..-.+ =.+.|-..|..|=.+|.-.+++.=|+-.|++..+- -+-|...|.+|=.+|.
T Consensus 367 WTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~ 443 (559)
T KOG1155|consen 367 WTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYE 443 (559)
T ss_pred HHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHH
Confidence 34445666777777788887777752 23447778888888888888888888888876543 2338899999999999
Q ss_pred cCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccc
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~ 171 (194)
+.++.++|..+|......|-. +...|.-|.+.|-+.++ .++|...+..
T Consensus 444 kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d-----~~eAa~~yek 491 (559)
T KOG1155|consen 444 KLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKD-----LNEAAQYYEK 491 (559)
T ss_pred HhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHh-----HHHHHHHHHH
Confidence 999999999999998877643 56788888888888888 6666666553
No 153
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.24 E-value=3.9 Score=38.48 Aligned_cols=83 Identities=11% Similarity=-0.002 Sum_probs=58.9
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
.+..+-.+=.+.|.+.+|++-|-.- -|...|..+|+.+.+.|.+++..+.+...++..-+|... +.||-+|
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHH
Confidence 3445556666677777777665443 367788888888888888888888887776666666644 5788888
Q ss_pred hcCCChHHHHHH
Q 029406 117 SDSGLPSEAMFI 128 (194)
Q Consensus 117 ~~~g~~~~a~~l 128 (194)
++.++..+..++
T Consensus 1177 Akt~rl~elE~f 1188 (1666)
T KOG0985|consen 1177 AKTNRLTELEEF 1188 (1666)
T ss_pred HHhchHHHHHHH
Confidence 888887765443
No 154
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=93.22 E-value=0.14 Score=31.09 Aligned_cols=64 Identities=8% Similarity=0.101 Sum_probs=50.6
Q ss_pred CHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCC-chHHhHHHHHhhhcccccc
Q 029406 105 DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYP-EFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 105 ~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g-~~~~~~~~~a~~~~~~m~~ 174 (194)
+..+|..+-..+...|++++|...|....+.. +-+...|..+-.++...| + .++|.+.++....
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~-----~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKD-----YEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCcc-----HHHHHHHHHHHHH
Confidence 56788889999999999999999999987752 335678888888888888 7 7777777665433
No 155
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.10 E-value=1.8 Score=37.68 Aligned_cols=119 Identities=16% Similarity=0.145 Sum_probs=60.8
Q ss_pred HHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCC----CCHHhHHHHHHHH
Q 029406 44 EFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKRE--EVL----FDQHTFGDIIRAF 116 (194)
Q Consensus 44 ~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g~~----p~~~ty~~li~~~ 116 (194)
.|.+.+.+..|.++|.+-. ++.| |....+-+=-..-..+.+.+|...|..-... .+- .-.-+++.|=.+|
T Consensus 389 ey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred HHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 3455566666666666654 2333 3444444433334455566666666544410 011 1223455555566
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccc
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~ 171 (194)
.+.+.+++|+..|++-... .+-|..||.++-..|...|. ++.|.+.|.+
T Consensus 466 Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgn-----ld~Aid~fhK 514 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGN-----LDKAIDHFHK 514 (611)
T ss_pred HHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcC-----hHHHHHHHHH
Confidence 6666666666666655443 23345556655555555555 5555555543
No 156
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.04 E-value=2.8 Score=36.06 Aligned_cols=120 Identities=12% Similarity=0.003 Sum_probs=92.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhc
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 118 (194)
.-+.+=-+++.++-|..+|+.-.. +.|. -..|.-.+.+=-..|++..|.++|..-... .|+...|.+.|+.=.+
T Consensus 112 kYae~Emknk~vNhARNv~dRAvt---~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElR 186 (677)
T KOG1915|consen 112 KYAEFEMKNKQVNHARNVWDRAVT---ILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELR 186 (677)
T ss_pred HHHHHHHhhhhHhHHHHHHHHHHH---hcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHH
Confidence 345555678888999999988762 3343 345666666667789999999999977554 8999999999999999
Q ss_pred CCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccc
Q 029406 119 SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~ 171 (194)
.+.++.|..+++...-. -|+..+|--..+---++|. ...+..++..
T Consensus 187 ykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~-----~~~aR~Vyer 232 (677)
T KOG1915|consen 187 YKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGN-----VALARSVYER 232 (677)
T ss_pred hhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCc-----HHHHHHHHHH
Confidence 99999999999987644 3888888777776667777 6666666553
No 157
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=92.92 E-value=0.69 Score=28.26 Aligned_cols=57 Identities=11% Similarity=0.011 Sum_probs=46.2
Q ss_pred HHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 029406 43 AEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE 101 (194)
Q Consensus 43 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g 101 (194)
..+.+.++++.|.++++.+.. . .+.+...|...=..+.+.|++++|...|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~-~-~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALE-L-DPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHH-h-CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 457889999999999999973 2 23356677777778889999999999999998663
No 158
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.84 E-value=0.79 Score=30.81 Aligned_cols=58 Identities=12% Similarity=0.102 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHH
Q 029406 91 KQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILK 149 (194)
Q Consensus 91 ~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~ 149 (194)
.+-++.+-...+.|+.....+.+.+|-+.+++..|.++|+..+.+ +.+....|..++.
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 333444444556666666666666666666666666666665443 2222225555443
No 159
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.77 E-value=3.9 Score=38.47 Aligned_cols=127 Identities=12% Similarity=0.091 Sum_probs=78.3
Q ss_pred hHHHHHHHHhhhhchhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH----
Q 029406 21 RFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWED---- 96 (194)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~---- 96 (194)
.+...+.+...---++.|..+++...+.|.|++-..++.-.+ ...-.|... +.||-+|++.++..+...+...
T Consensus 1119 ~v~dAieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaR-kk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A 1195 (1666)
T KOG0985|consen 1119 LVKDAIESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMAR-KKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVA 1195 (1666)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHH-HhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCch
Confidence 444555555554556778899999999999999988877665 334344433 6899999999988777655420
Q ss_pred --------HHhcC-------CCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCc
Q 029406 97 --------LKREE-------VLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 97 --------m~~~g-------~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~ 156 (194)
.-+.+ +-.++.-|..|-..++..|.+..|.+.-+.. -+..||.-+=.+|...+.
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~E 1264 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEE 1264 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhh
Confidence 00000 0113334455555555555555554443331 245788888888887666
No 160
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=92.70 E-value=2.7 Score=30.14 Aligned_cols=88 Identities=9% Similarity=0.106 Sum_probs=67.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhc--CC--CCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCCCHHhHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEI--WY--RPDMFFYRDMLMMLARNKK-VVEAKQVWEDLKREEVLFDQHTFGDI 112 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~--~p~~~~~~~li~~~~~~g~-~~~a~~l~~~m~~~g~~p~~~ty~~l 112 (194)
..++|......+.....+.+++.+..-. .+ ..+..+|.+++++.++..- ---+..+|..|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4577888888888888888888884200 11 2456689999999988777 55668899999998999999999999
Q ss_pred HHHHhcCCChHHH
Q 029406 113 IRAFSDSGLPSEA 125 (194)
Q Consensus 113 i~~~~~~g~~~~a 125 (194)
|.++.+....+..
T Consensus 122 i~~~l~g~~~~~~ 134 (145)
T PF13762_consen 122 IKAALRGYFHDSL 134 (145)
T ss_pred HHHHHcCCCCcch
Confidence 9998877444443
No 161
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.64 E-value=4.2 Score=32.14 Aligned_cols=87 Identities=16% Similarity=0.193 Sum_probs=68.5
Q ss_pred HhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHH
Q 029406 46 QRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEA 125 (194)
Q Consensus 46 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a 125 (194)
-..|++++|+++|+... +.. +.|.++|--=+-..-..|..-+|++-+....+. +..|...|--+-..|...|++++|
T Consensus 97 Ea~~~~~~A~e~y~~lL-~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA 173 (289)
T KOG3060|consen 97 EATGNYKEAIEYYESLL-EDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKA 173 (289)
T ss_pred HHhhchhhHHHHHHHHh-ccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHH
Confidence 34799999999999998 333 667788876565555667766887776666443 566999999999999999999999
Q ss_pred HHHHHHhHhC
Q 029406 126 MFIYNEMRSS 135 (194)
Q Consensus 126 ~~l~~~M~~~ 135 (194)
.-++++|.-.
T Consensus 174 ~fClEE~ll~ 183 (289)
T KOG3060|consen 174 AFCLEELLLI 183 (289)
T ss_pred HHHHHHHHHc
Confidence 9999998654
No 162
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.62 E-value=1.7 Score=37.36 Aligned_cols=129 Identities=10% Similarity=0.088 Sum_probs=87.0
Q ss_pred chhhHHHHHHHH---HhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-----CCCCC
Q 029406 34 LKSDLVSVLAEF---QRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE-----EVLFD 105 (194)
Q Consensus 34 ~~~~~~~ll~~~---~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----g~~p~ 105 (194)
.+....+.|.-| -+.+++.+++..|++.+ ..++.-...||..=..+...++|+.|.+-|+...+. ++..+
T Consensus 424 ~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~k--kkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~ 501 (606)
T KOG0547|consen 424 DPENAYAYIQLCCALYRQHKIAESMKTFEEAK--KKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVN 501 (606)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccccc
Confidence 333333444444 36789999999999997 345556778888888889999999999999877642 11112
Q ss_pred H--HhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCC-ChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 106 Q--HTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP-ISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 106 ~--~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p-~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
. .+--+++-.-.+ +++..|..++....+- .| -...|-.|-..-.+.|+ .++|.++|++-
T Consensus 502 ~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~-----i~eAielFEks 563 (606)
T KOG0547|consen 502 AAPLVHKALLVLQWK-EDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGK-----IDEAIELFEKS 563 (606)
T ss_pred chhhhhhhHhhhchh-hhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhh-----HHHHHHHHHHH
Confidence 2 222222222223 8888999988887554 23 24678888888888888 88888888754
No 163
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=92.44 E-value=1.9 Score=39.54 Aligned_cols=120 Identities=17% Similarity=0.128 Sum_probs=88.0
Q ss_pred HHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHH
Q 029406 45 FQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSE 124 (194)
Q Consensus 45 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 124 (194)
....+++..|.+-.+.+.+.++-.|-...+-+++ ..|.|..++|..+++.....+.. |..|...+-.+|-+.+..++
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 3456778899988888875554444333333332 24689999999999988776655 99999999999999999999
Q ss_pred HHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcc
Q 029406 125 AMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFP 170 (194)
Q Consensus 125 a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~ 170 (194)
|..+|+..... -|+...-..+..+|.+.+++ -+..+.|.+++.
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~y-k~qQkaa~~LyK 138 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSY-KKQQKAALQLYK 138 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 99999986543 57788888888888876663 222345555554
No 164
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.39 E-value=6.5 Score=33.74 Aligned_cols=129 Identities=8% Similarity=0.034 Sum_probs=105.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhc
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 118 (194)
.+-+-|+-.++.+.|...|+.-.+ +.|. ...|+.|=.=|...++...|.+-++...+-. +.|-..|-.|=.+|.-
T Consensus 335 iIaNYYSlr~eHEKAv~YFkRALk---LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 335 IIANYYSLRSEHEKAVMYFKRALK---LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEI 410 (559)
T ss_pred eehhHHHHHHhHHHHHHHHHHHHh---cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHH
Confidence 344555567888999999998863 4454 6788888888999999999999999887654 4488899999999999
Q ss_pred CCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCc
Q 029406 119 SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
.+...=|.-.|+....-. +-|+..|.+|-++|.+.++ .++|.+.|......|-+
T Consensus 411 m~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~-----~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNR-----LEEAIKCYKRAILLGDT 464 (559)
T ss_pred hcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhcc-----HHHHHHHHHHHHhcccc
Confidence 999999999999876542 4579999999999999999 88888888876555533
No 165
>PRK15331 chaperone protein SicA; Provisional
Probab=92.27 E-value=1.9 Score=31.58 Aligned_cols=89 Identities=10% Similarity=-0.073 Sum_probs=63.8
Q ss_pred HHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHH-HHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCC
Q 029406 43 AEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFY-RDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGL 121 (194)
Q Consensus 43 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 121 (194)
-.+-..|++++|..+|..+. . +.|-..-| ..|=..|-..+.+++|+.+|......+.. |...+=-.-.+|...|+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~-~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLC-I--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHH-H--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCC
Confidence 33456899999999999997 3 23433334 44444444468999999999877665532 44445566778899999
Q ss_pred hHHHHHHHHHhHhC
Q 029406 122 PSEAMFIYNEMRSS 135 (194)
Q Consensus 122 ~~~a~~l~~~M~~~ 135 (194)
.+.|..+|....++
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999987763
No 166
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.26 E-value=1.5 Score=35.64 Aligned_cols=93 Identities=13% Similarity=0.141 Sum_probs=66.3
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhh--cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhc
Q 029406 41 VLAEFQRQDQVFLCMKLYDVVRKE--IWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118 (194)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~--~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 118 (194)
.+..-....+++++...+-.++.+ ....|+.. ..+.++.|-+ -++++++.+...=...|+-||..+++.+|..+.+
T Consensus 70 ~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk 147 (418)
T KOG4570|consen 70 LVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLK 147 (418)
T ss_pred hhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHHHHHHHHh
Confidence 344444478899999888888622 12333322 2233444432 3588999999888899999999999999999999
Q ss_pred CCChHHHHHHHHHhHhC
Q 029406 119 SGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~ 135 (194)
.+++.+|..+.-.|...
T Consensus 148 ~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 148 KENYKDAASVVTEVMMQ 164 (418)
T ss_pred cccHHHHHHHHHHHHHH
Confidence 99999998877766443
No 167
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.25 E-value=4.1 Score=32.62 Aligned_cols=78 Identities=9% Similarity=-0.020 Sum_probs=65.2
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----cCCCCCHHhHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR-----EEVLFDQHTFG 110 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-----~g~~p~~~ty~ 110 (194)
..+..++..+...|+++.+...++.+.. --+-+...|..+|.+|.++|+...|+..|+++.. .|+.|...+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3455778888889999999999999973 2234789999999999999999999999988875 68999988877
Q ss_pred HHHHH
Q 029406 111 DIIRA 115 (194)
Q Consensus 111 ~li~~ 115 (194)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 77666
No 168
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=92.22 E-value=1.3 Score=27.46 Aligned_cols=62 Identities=10% Similarity=0.044 Sum_probs=45.9
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhh---cCC-CCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKE---IWY-RPD-MFFYRDMLMMLARNKKVVEAKQVWEDLK 98 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~-~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~ 98 (194)
.+..+-..|...|++++|+..|++...- .|- .|+ ..+++.+=..|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455667788899999999999998632 221 122 5577888888999999999999998754
No 169
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.14 E-value=1.9 Score=37.76 Aligned_cols=56 Identities=14% Similarity=0.040 Sum_probs=28.6
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVW 94 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~ 94 (194)
++.+=|+.+.+++++++|.+.-..+. .+.+-|...+.+=+-+..+.+.+++|+.+.
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil--~~~pdd~~a~~cKvValIq~~ky~~ALk~i 69 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKIL--SIVPDDEDAIRCKVVALIQLDKYEDALKLI 69 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHH--hcCCCcHhhHhhhHhhhhhhhHHHHHHHHH
Confidence 34444555555566666666655554 222333444455555555555566665333
No 170
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=91.97 E-value=1.8 Score=30.27 Aligned_cols=55 Identities=5% Similarity=0.059 Sum_probs=43.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHH
Q 029406 74 YRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYN 130 (194)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~ 130 (194)
...+|..+...+....+..+++.+...+. .+...+|.+|..|++... .+.+..+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~ 64 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLD 64 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHH
Confidence 45678888888999999999999988873 688899999999998753 44445555
No 171
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=91.95 E-value=1.2 Score=29.62 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhH
Q 029406 89 EAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133 (194)
Q Consensus 89 ~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~ 133 (194)
++.+-++.+-...+.|+....++.+.+|-+.+++..|.++|+..+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333334444444555566666666666666666666666665554
No 172
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.89 E-value=0.052 Score=38.42 Aligned_cols=85 Identities=12% Similarity=0.182 Sum_probs=56.0
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 119 (194)
.+|..+.+.+.+.....+++.+. ..+..-+....|.++..|++.+..++...++... .++. ...++..|-+.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~-~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~--~~yd-----~~~~~~~c~~~ 83 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALV-KENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS--NNYD-----LDKALRLCEKH 83 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHH-HTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS--SSS------CTHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH-hcccccCHHHHHHHHHHHHhcCCchHHHHHcccc--cccC-----HHHHHHHHHhc
Confidence 56777778888888888888887 4555577888899999999998778887777621 1122 23445555555
Q ss_pred CChHHHHHHHHHh
Q 029406 120 GLPSEAMFIYNEM 132 (194)
Q Consensus 120 g~~~~a~~l~~~M 132 (194)
|.++.+.-++..+
T Consensus 84 ~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 84 GLYEEAVYLYSKL 96 (143)
T ss_dssp TSHHHHHHHHHCC
T ss_pred chHHHHHHHHHHc
Confidence 5555555555543
No 173
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.84 E-value=0.33 Score=39.35 Aligned_cols=60 Identities=10% Similarity=0.049 Sum_probs=48.4
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE 101 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g 101 (194)
.++..|.+ =++..++.+...-. +.|+-||.++++.+|+.+.+.+++.+|.++...|....
T Consensus 106 ~~irlllk-y~pq~~i~~l~npI-qYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 106 TWIRLLLK-YDPQKAIYTLVNPI-QYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHc-cChHHHHHHHhCcc-hhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 34444443 34668888877777 89999999999999999999999999999988877654
No 174
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=91.84 E-value=4.5 Score=34.53 Aligned_cols=62 Identities=13% Similarity=0.121 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDM----FFYRDMLMMLARNKKVVEAKQVWEDLKRE 100 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 100 (194)
..++.+=..|.+.|++++|+..|+.-.. +.|+. ..|+.+=.+|...|++++|+..+++..+.
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3466777788999999999999999763 55763 46899999999999999999999988775
No 175
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=91.83 E-value=5.7 Score=31.88 Aligned_cols=92 Identities=14% Similarity=0.127 Sum_probs=71.6
Q ss_pred HHHHHHHh--cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCCCHHhHHHHHHHH
Q 029406 40 SVLAEFQR--QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE-EVLFDQHTFGDIIRAF 116 (194)
Q Consensus 40 ~ll~~~~~--~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~~~ty~~li~~~ 116 (194)
.+|..+.. +.....-.++.+.+....+..++..+..++|..+++.+++.+-.++|..-... +..-|...|...|..-
T Consensus 169 lLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li 248 (292)
T PF13929_consen 169 LLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLI 248 (292)
T ss_pred HHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHH
Confidence 34444444 12344456677777666778899999999999999999999999999987765 5566889999999999
Q ss_pred hcCCChHHHHHHHHH
Q 029406 117 SDSGLPSEAMFIYNE 131 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~ 131 (194)
...|+..-...+.++
T Consensus 249 ~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 249 VESGDQEVMRKIIDD 263 (292)
T ss_pred HHcCCHHHHHHHhhC
Confidence 999999886665553
No 176
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=91.57 E-value=2.3 Score=37.12 Aligned_cols=104 Identities=13% Similarity=0.004 Sum_probs=79.9
Q ss_pred hcCCHhHHHHHHHHHHh----hcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCC
Q 029406 47 RQDQVFLCMKLYDVVRK----EIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGL 121 (194)
Q Consensus 47 ~~~~~~~a~~~~~~m~~----~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 121 (194)
..+.+.+|...|+.-.. ...-.+ -..+++.|=.+|.+.+.+++|+..|++..... +-|..+|.++--.|...|+
T Consensus 426 ~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgn 504 (611)
T KOG1173|consen 426 TYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGN 504 (611)
T ss_pred hHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcC
Confidence 46788899888887751 111111 23457777788899999999999999887764 3388899999999999999
Q ss_pred hHHHHHHHHHhHhCCCCCChhhHHHHHHhhCC
Q 029406 122 PSEAMFIYNEMRSSPATPISLPFRVILKGLIP 153 (194)
Q Consensus 122 ~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~ 153 (194)
++.|.+.|+.-. ...||-.+-+.++..+..
T Consensus 505 ld~Aid~fhKaL--~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 505 LDKAIDHFHKAL--ALKPDNIFISELLKLAIE 534 (611)
T ss_pred hHHHHHHHHHHH--hcCCccHHHHHHHHHHHH
Confidence 999999999854 457888888888876653
No 177
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=91.33 E-value=6.6 Score=36.64 Aligned_cols=123 Identities=5% Similarity=0.087 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC----------
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFD---------- 105 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~---------- 105 (194)
..+..|+..+...+++++|.++.+.-.....-.+....|..+ .+.+.+...++..+ .+... +..+
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve~~~ 106 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVEHIC 106 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhh--hhhhh-cccccchhHHHHHH
Confidence 345578999989999999999999776433333344444444 56666666666555 22111 1112
Q ss_pred ---------HHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcc
Q 029406 106 ---------QHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFP 170 (194)
Q Consensus 106 ---------~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~ 170 (194)
...+-.+-.+|-+.|+.+++..+|++..+-. +-|..+.|.+...|... + +++|.+++.
T Consensus 107 ~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d-----L~KA~~m~~ 173 (906)
T PRK14720 107 DKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D-----KEKAITYLK 173 (906)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h-----HHHHHHHHH
Confidence 2467778888889999999999999998775 44677777777777766 5 555555543
No 178
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.32 E-value=1.6 Score=36.13 Aligned_cols=117 Identities=9% Similarity=0.078 Sum_probs=75.1
Q ss_pred cCCHhHHHHHHHHHHhhcCCCCCHHH-HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHH
Q 029406 48 QDQVFLCMKLYDVVRKEIWYRPDMFF-YRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126 (194)
Q Consensus 48 ~~~~~~a~~~~~~m~~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~ 126 (194)
...+.-|.++|+-.- .++..-|+.- --++-..+.-...+++++-.+..++..=..-|...|| +..+++..|.+.+|.
T Consensus 336 reHlKiAqqffqlVG-~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaE 413 (557)
T KOG3785|consen 336 REHLKIAQQFFQLVG-ESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAE 413 (557)
T ss_pred HHHHHHHHHHHHHhc-ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHH
Confidence 345677888887765 4444433221 1223333334457888888888776543443444444 668889999999999
Q ss_pred HHHHHhHhCCCCCChhhHHH-HHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 127 FIYNEMRSSPATPISLPFRV-ILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 127 ~l~~~M~~~g~~p~~~ty~~-ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
++|-....-.++ |..+|.. |.++|+.++. .+.|++++-.+
T Consensus 414 elf~~is~~~ik-n~~~Y~s~LArCyi~nkk-----P~lAW~~~lk~ 454 (557)
T KOG3785|consen 414 ELFIRISGPEIK-NKILYKSMLARCYIRNKK-----PQLAWDMMLKT 454 (557)
T ss_pred HHHhhhcChhhh-hhHHHHHHHHHHHHhcCC-----chHHHHHHHhc
Confidence 999776544333 4455554 5578889998 88888876644
No 179
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=91.17 E-value=3.7 Score=28.43 Aligned_cols=56 Identities=11% Similarity=0.058 Sum_probs=39.1
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCCCC--HHhHHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 80 MLARNKKVVEAKQVWEDLKREEVLFD--QHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 80 ~~~~~g~~~~a~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
++-..|+.++|+.+|++-...|.... ...+-.+-+.|...|++++|..+|+.....
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34456778888888888777775543 345666667777778888888888776543
No 180
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=90.71 E-value=3.5 Score=35.90 Aligned_cols=103 Identities=14% Similarity=0.130 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-----C-CCCCHHh-HHHHHHHHhcCCChHHHHHHHHHhHh---CCCC
Q 029406 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE-----E-VLFDQHT-FGDIIRAFSDSGLPSEAMFIYNEMRS---SPAT 138 (194)
Q Consensus 69 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----g-~~p~~~t-y~~li~~~~~~g~~~~a~~l~~~M~~---~g~~ 138 (194)
.-..++..+-..|...|+++.|..+|..-.+. | ..|...+ -+.+-..|...+++++|..+|+.+.. ..+-
T Consensus 197 ~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G 276 (508)
T KOG1840|consen 197 ERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG 276 (508)
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 34567777999999999999999999876643 3 2334333 33466788888999999999999843 2222
Q ss_pred CC----hhhHHHHHHhhCCCCchHHhHH--HHHhhhccc
Q 029406 139 PI----SLPFRVILKGLIPYPEFREKVK--DDFLELFPD 171 (194)
Q Consensus 139 p~----~~ty~~ll~~~~~~g~~~~~~~--~~a~~~~~~ 171 (194)
++ ..|++.|-..|++.|++.+.-. +.|.+|+++
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~ 315 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK 315 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 33 3567777778999999433222 344445443
No 181
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.55 E-value=0.089 Score=37.19 Aligned_cols=55 Identities=7% Similarity=0.062 Sum_probs=45.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHH
Q 029406 76 DMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYN 130 (194)
Q Consensus 76 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~ 130 (194)
.+|..+.+.+.+.....+++.+...+-.-+....+.++..|++.+..++.+.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 4577777888899999999999987766789999999999999999888888777
No 182
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.39 E-value=5.7 Score=29.26 Aligned_cols=24 Identities=21% Similarity=0.301 Sum_probs=13.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHh
Q 029406 109 FGDIIRAFSDSGLPSEAMFIYNEM 132 (194)
Q Consensus 109 y~~li~~~~~~g~~~~a~~l~~~M 132 (194)
+..++..+...|++-+|.++....
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHc
Confidence 455555566666666665555543
No 183
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=90.38 E-value=3.2 Score=33.85 Aligned_cols=86 Identities=13% Similarity=0.152 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHh
Q 029406 71 MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG 150 (194)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~ 150 (194)
..+.+..|.-|...|....|.++-.+. .+ |+..-|-.-|.+|+..+++++...+-.. + - .+.=|-.++..
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---k-K--sPIGyepFv~~ 246 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS---K-K--SPIGYEPFVEA 246 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---C-C--CCCChHHHHHH
Confidence 446677788888999999998886655 44 6999999999999999999986654322 2 2 24778889999
Q ss_pred hCCCCchHHhHHHHHhhhccc
Q 029406 151 LIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 151 ~~~~g~~~~~~~~~a~~~~~~ 171 (194)
|.+.|. ...|..+.+.
T Consensus 247 ~~~~~~-----~~eA~~yI~k 262 (319)
T PF04840_consen 247 CLKYGN-----KKEASKYIPK 262 (319)
T ss_pred HHHCCC-----HHHHHHHHHh
Confidence 999998 7777777664
No 184
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=90.07 E-value=4.9 Score=30.13 Aligned_cols=71 Identities=18% Similarity=0.235 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHhhhhchhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 029406 4 ESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLAR 83 (194)
Q Consensus 4 ~a~~vi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 83 (194)
+|+.++..+++.-+.++.+...++..... ..+-.|.++|.+++|.+++++.-. .|+......-+....+
T Consensus 87 SAl~v~~~I~~E~~~~~~lhe~i~~lik~-------~aV~VCm~~g~Fk~A~eiLkr~~~----d~~~~~~r~kL~~II~ 155 (200)
T cd00280 87 SALMVLESIEKEFSLPETLHEEIRKLIKE-------QAVAVCMENGEFKKAEEVLKRLFS----DPESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHH-------HHHHHHHhcCchHHHHHHHHHHhc----CCCchhHHHHHHHHHH
Confidence 46777777777666666555555444332 445567788888999888888862 3555555554444444
Q ss_pred CC
Q 029406 84 NK 85 (194)
Q Consensus 84 ~g 85 (194)
.+
T Consensus 156 ~K 157 (200)
T cd00280 156 EK 157 (200)
T ss_pred cc
Confidence 43
No 185
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.05 E-value=9 Score=33.19 Aligned_cols=126 Identities=12% Similarity=0.088 Sum_probs=87.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
|+.+-..|....+..+.++.|+.-.+-..-.||++.... .++.-.+++++|..=|++...-. +-+...|-.+--+.-
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRg--Qm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Y 439 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRG--QMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALY 439 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHH--HHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHH
Confidence 666667788888888899999888643344455554443 33444567889988888776543 125556777767777
Q ss_pred cCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
|.+.++.++..|++-+.+ ++--+..|+.....+-..++ ++.|.+-++.-
T Consensus 440 r~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqq-----Fd~A~k~YD~a 488 (606)
T KOG0547|consen 440 RQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQ-----FDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHh-----HHHHHHHHHHH
Confidence 888999999999998776 55556777777777777776 55555555543
No 186
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=89.83 E-value=5.6 Score=31.60 Aligned_cols=127 Identities=10% Similarity=0.045 Sum_probs=70.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHh--hcCCCCC--HHHHHHHHHHHHhC-CCHHHHHHHHHHHHh----cCCCC--CH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRK--EIWYRPD--MFFYRDMLMMLARN-KKVVEAKQVWEDLKR----EEVLF--DQ 106 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~--~~~~~p~--~~~~~~li~~~~~~-g~~~~a~~l~~~m~~----~g~~p--~~ 106 (194)
+.....+|-+ .++++|+..|+.-.. ...-.|+ ..++..+=..|-.. |++++|+..|.+..+ .| .+ -.
T Consensus 78 ~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~ 155 (282)
T PF14938_consen 78 YEEAANCYKK-GDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAA 155 (282)
T ss_dssp HHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHH
T ss_pred HHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHH
Confidence 3344444433 377777777666531 0111222 33555556667666 788888888877663 23 21 23
Q ss_pred HhHHHHHHHHhcCCChHHHHHHHHHhHhCCCC-----CCh--hhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 107 HTFGDIIRAFSDSGLPSEAMFIYNEMRSSPAT-----PIS--LPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 107 ~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~-----p~~--~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
.++..+...+.+.|++++|..+|++....-.. ++. ..+.++|-.+ ..|| .-.|.+.++..
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L-~~~D-----~v~A~~~~~~~ 222 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHL-AMGD-----YVAARKALERY 222 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHH-HTT------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHH-HcCC-----HHHHHHHHHHH
Confidence 56788889999999999999999988654322 122 2234444333 4577 55555555543
No 187
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=89.51 E-value=8.5 Score=30.01 Aligned_cols=130 Identities=8% Similarity=0.029 Sum_probs=81.0
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh--C---------------CC---HHHHHHHH
Q 029406 35 KSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLAR--N---------------KK---VVEAKQVW 94 (194)
Q Consensus 35 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~--~---------------g~---~~~a~~l~ 94 (194)
......+..++.+.+++++|...|+...+...-.|+. -|...+.+.+. . .+ ..+|+.-|
T Consensus 69 ~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~ 147 (243)
T PRK10866 69 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDF 147 (243)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHH
Confidence 3445567788889999999999999998655555554 33344444331 1 11 34566666
Q ss_pred HHHHhc----CCCCCHHhHH------------HHHHHHhcCCChHHHHHHHHHhHhC--CCCCChhhHHHHHHhhCCCCc
Q 029406 95 EDLKRE----EVLFDQHTFG------------DIIRAFSDSGLPSEAMFIYNEMRSS--PATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 95 ~~m~~~----g~~p~~~ty~------------~li~~~~~~g~~~~a~~l~~~M~~~--g~~p~~~ty~~ll~~~~~~g~ 156 (194)
+.+.+. ...|+....- .+..-|.+.|.+..|..=|+.+.++ +.+......-.+..+|...|.
T Consensus 148 ~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~ 227 (243)
T PRK10866 148 SKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL 227 (243)
T ss_pred HHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC
Confidence 666543 2333332211 3345588888888888888888765 333445566677788888888
Q ss_pred hHHhHHHHHhhhcc
Q 029406 157 FREKVKDDFLELFP 170 (194)
Q Consensus 157 ~~~~~~~~a~~~~~ 170 (194)
.+.|.....
T Consensus 228 -----~~~a~~~~~ 236 (243)
T PRK10866 228 -----NAQADKVAK 236 (243)
T ss_pred -----hHHHHHHHH
Confidence 666655443
No 188
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=89.05 E-value=5.7 Score=34.70 Aligned_cols=87 Identities=9% Similarity=0.165 Sum_probs=64.4
Q ss_pred HhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC-CHHhHHHHHHHHhcCCChHHHHHHH
Q 029406 51 VFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF-DQHTFGDIIRAFSDSGLPSEAMFIY 129 (194)
Q Consensus 51 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~ 129 (194)
.+.....++.......+.|+ .+|...|+.--|..-.+.|..+|.+..+.+..+ ++..++++|.-||. ++..-|+.+|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 45556667777644444444 467778888888888999999999999988877 77888888888774 6788899999
Q ss_pred HH-hHhCCCCC
Q 029406 130 NE-MRSSPATP 139 (194)
Q Consensus 130 ~~-M~~~g~~p 139 (194)
+. |+..|-.|
T Consensus 425 eLGLkkf~d~p 435 (656)
T KOG1914|consen 425 ELGLKKFGDSP 435 (656)
T ss_pred HHHHHhcCCCh
Confidence 86 44445443
No 189
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=88.80 E-value=9 Score=35.46 Aligned_cols=81 Identities=15% Similarity=0.263 Sum_probs=43.7
Q ss_pred hhhHHHHHHHHHh-cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHH
Q 029406 35 KSDLVSVLAEFQR-QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113 (194)
Q Consensus 35 ~~~~~~ll~~~~~-~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li 113 (194)
...+......|.. .|+.+.|+.+|+.-+. |-++++..|-.|+.++|-++-++ .| |....-.|-
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~C~qGk~~kAa~iA~e---sg---d~AAcYhla 974 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIKCIQGKTDKAARIAEE---SG---DKAACYHLA 974 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeEeeccCchHHHHHHHh---cc---cHHHHHHHH
Confidence 3445555555655 5777777777777652 44555555555666655554432 22 333444444
Q ss_pred HHHhcCCChHHHHHHHHH
Q 029406 114 RAFSDSGLPSEAMFIYNE 131 (194)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~ 131 (194)
+-|-..|++.+|..+|..
T Consensus 975 R~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 975 RMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred HHhhhhHHHHHHHHHHHH
Confidence 444455555555544443
No 190
>PLN02789 farnesyltranstransferase
Probab=88.69 E-value=12 Score=30.58 Aligned_cols=98 Identities=3% Similarity=-0.052 Sum_probs=63.8
Q ss_pred CHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCH--HHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHH
Q 029406 50 QVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKV--VEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127 (194)
Q Consensus 50 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~--~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 127 (194)
++.+++.+++.+.. . .+-+...|+.--..+.+.|.. ++++.+++++.+..-+ |..+|+..-..+.+.|++++++.
T Consensus 87 ~l~eeL~~~~~~i~-~-npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~ 163 (320)
T PLN02789 87 DLEEELDFAEDVAE-D-NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELE 163 (320)
T ss_pred hHHHHHHHHHHHHH-H-CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHH
Confidence 56788888888762 2 223444566554445555543 6678888777766533 77788888888888888888888
Q ss_pred HHHHhHhCCCCCChhhHHHHHHhh
Q 029406 128 IYNEMRSSPATPISLPFRVILKGL 151 (194)
Q Consensus 128 l~~~M~~~g~~p~~~ty~~ll~~~ 151 (194)
.++++.+.... |...|+.....+
T Consensus 164 ~~~~~I~~d~~-N~sAW~~R~~vl 186 (320)
T PLN02789 164 YCHQLLEEDVR-NNSAWNQRYFVI 186 (320)
T ss_pred HHHHHHHHCCC-chhHHHHHHHHH
Confidence 88888776433 344454444333
No 191
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.45 E-value=7.9 Score=28.27 Aligned_cols=98 Identities=17% Similarity=0.174 Sum_probs=63.4
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDM---FFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li 113 (194)
-++.++..-.+.++.+++..+++-++- .+|.. .++-.. .+.+.|++.+|.++|+.+...+ |..- |..-+
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~~--~~~p-~~kAL 83 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEERA--PGFP-YAKAL 83 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhccC--CCCh-HHHHH
Confidence 355566666778899999999999984 45543 344443 4567899999999999987664 3333 44444
Q ss_pred HHHhcCCChHHHHHHHHH-hHhCCCCCChh
Q 029406 114 RAFSDSGLPSEAMFIYNE-MRSSPATPISL 142 (194)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~-M~~~g~~p~~~ 142 (194)
-++|-...-+..++.+-. +.+.+-.|+..
T Consensus 84 lA~CL~~~~D~~Wr~~A~evle~~~d~~a~ 113 (160)
T PF09613_consen 84 LALCLYALGDPSWRRYADEVLESGADPDAR 113 (160)
T ss_pred HHHHHHHcCChHHHHHHHHHHhcCCChHHH
Confidence 445555445555555544 56665555543
No 192
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.33 E-value=5.4 Score=26.62 Aligned_cols=60 Identities=12% Similarity=0.014 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 53 LCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 53 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
+..+-++.+. ...+.|+.....+.+++|-|.+++.-|.++|+..+... ..+...|..++.
T Consensus 25 e~rr~mN~l~-~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLF-GYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHh-ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 4445555555 67888999999999999999999999999999877432 113445665554
No 193
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.25 E-value=1 Score=23.78 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=19.6
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHh
Q 029406 108 TFGDIIRAFSDSGLPSEAMFIYNEM 132 (194)
Q Consensus 108 ty~~li~~~~~~g~~~~a~~l~~~M 132 (194)
+|+.|-..|.+.|++++|..+|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4677888888888888888888874
No 194
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=88.00 E-value=13 Score=33.29 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=61.4
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhh-----cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCCCH--HhHH
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKE-----IWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE--VLFDQ--HTFG 110 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~-----~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p~~--~ty~ 110 (194)
..|.-+++.+++++|-+.+....++ ...+.+...|+.+-+..+++.+.-..+.+= .+.+.| .-||. ..|+
T Consensus 174 eyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvd-aiiR~gi~rftDq~g~Lw~ 252 (835)
T KOG2047|consen 174 EYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVD-AIIRGGIRRFTDQLGFLWC 252 (835)
T ss_pred HHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHH-HHHHhhcccCcHHHHHHHH
Confidence 4566666667777766666665321 122334555666666666554433332221 111222 22444 3577
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCC
Q 029406 111 DIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIP 153 (194)
Q Consensus 111 ~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~ 153 (194)
+|..=|.+.|.+++|-++|++-..+ ..+..-|+.+.+.|.+
T Consensus 253 SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 253 SLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHH
Confidence 7777777777777777777765544 2345566667777664
No 195
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=87.79 E-value=3.9 Score=36.78 Aligned_cols=88 Identities=16% Similarity=0.064 Sum_probs=69.6
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHH
Q 029406 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148 (194)
Q Consensus 69 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll 148 (194)
|--..-..+-..+...|....|..+|++. .+|.-+|-+|+..|..++|..+..+-.++ +||+.-|.++.
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 33344456777888889999999999966 35788899999999999999998887773 78999999998
Q ss_pred HhhCCCCchHHhHHHHHhhhcccc
Q 029406 149 KGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 149 ~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
+......- .+.|.++++..
T Consensus 465 Dv~~d~s~-----yEkawElsn~~ 483 (777)
T KOG1128|consen 465 DVLHDPSL-----YEKAWELSNYI 483 (777)
T ss_pred hhccChHH-----HHHHHHHhhhh
Confidence 88765444 77788877654
No 196
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.76 E-value=8.5 Score=27.82 Aligned_cols=102 Identities=15% Similarity=0.140 Sum_probs=67.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+..++..-...++++++..+++.|+--+.-.|...+|-..| +...|++.+|.++|+...+.+..+ .|..-+-++|
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~~---p~~kAL~A~C 87 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGAP---PYGKALLALC 87 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCCc---hHHHHHHHHH
Confidence 34444444558999999999999984222223344555444 567899999999999998775332 4677777777
Q ss_pred cCCChHHHHHHHH-HhHhCCCCCChhhH
Q 029406 118 DSGLPSEAMFIYN-EMRSSPATPISLPF 144 (194)
Q Consensus 118 ~~g~~~~a~~l~~-~M~~~g~~p~~~ty 144 (194)
-.-.-|-.++.+- .+.+.|-.|+....
T Consensus 88 L~al~Dp~Wr~~A~~~le~~~~~~a~~L 115 (153)
T TIGR02561 88 LNAKGDAEWHVHADEVLARDADADAVAL 115 (153)
T ss_pred HHhcCChHHHHHHHHHHHhCCCHhHHHH
Confidence 7766666666444 35556555555443
No 197
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=87.69 E-value=17 Score=31.77 Aligned_cols=80 Identities=14% Similarity=-0.034 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHH
Q 029406 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148 (194)
Q Consensus 69 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll 148 (194)
.+...|..+=-.....|++++|...+++..... |+...|..+-..|...|+.++|.+.+..... ..|...||...=
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~~~~~ 493 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTLYWIE 493 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchHHHHH
Confidence 344556555444445689999999999887765 6888899999999999999999998887543 345555665444
Q ss_pred HhhC
Q 029406 149 KGLI 152 (194)
Q Consensus 149 ~~~~ 152 (194)
+.-+
T Consensus 494 ~~~f 497 (517)
T PRK10153 494 NLVF 497 (517)
T ss_pred hccc
Confidence 4433
No 198
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=87.16 E-value=5.7 Score=25.90 Aligned_cols=61 Identities=16% Similarity=0.127 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCc
Q 029406 90 AKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 90 a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~ 156 (194)
+.++++.+.+.|+- +....+.+-.+--..|+.+.|..++.... +| +..|..++.++...|+
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~ 81 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEH 81 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCc
Confidence 44566666666633 44455555555456677777777777766 43 3556677777766666
No 199
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.06 E-value=14 Score=29.73 Aligned_cols=99 Identities=14% Similarity=0.128 Sum_probs=70.6
Q ss_pred HhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC-CHHhHHHHHHHHhcCCChH
Q 029406 46 QRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF-DQHTFGDIIRAFSDSGLPS 123 (194)
Q Consensus 46 ~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~ 123 (194)
.+.+++.+|+..|.+-.+ +.| |.+.|.-==-+|++.|.++.|++=...-... .| ...+|..|=.+|...|++.
T Consensus 92 m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHH
Confidence 457788888888888863 455 5666666677888899988887766655443 23 3467888888999999999
Q ss_pred HHHHHHHHhHhCCCCCChhhHHHHHHhh
Q 029406 124 EAMFIYNEMRSSPATPISLPFRVILKGL 151 (194)
Q Consensus 124 ~a~~l~~~M~~~g~~p~~~ty~~ll~~~ 151 (194)
.|.+.|..-.+ +.|+-.+|..=|...
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 99888877543 456666666555443
No 200
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=86.91 E-value=3.8 Score=35.10 Aligned_cols=121 Identities=12% Similarity=0.037 Sum_probs=68.3
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHH-HHhcCCCCCHH-hHHHHHHHHh
Q 029406 41 VLAEFQRQDQVFLCMKLYDVVRKEIW-YRPDMFFYRDMLMMLARNKKVVEAKQVWED-LKREEVLFDQH-TFGDIIRAFS 117 (194)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~l~~~-m~~~g~~p~~~-ty~~li~~~~ 117 (194)
.|+...+..-+..|..+|-+.++ .+ +.++++.++++|..+| .|+..-|..+|+- |+.. ||.. --+-.+.-+.
T Consensus 403 ~~N~v~r~~Gl~aaR~~F~k~rk-~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~kyl~fLi 477 (660)
T COG5107 403 HLNYVLRKRGLEAARKLFIKLRK-EGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKYLLFLI 477 (660)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhc-cCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHHHHHHH
Confidence 45555555566677777777763 44 5567777777777665 3445666666652 2222 2332 2344555556
Q ss_pred cCCChHHHHHHHHHhHhCCCCCC--hhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPI--SLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~--~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
.-++-..|..+|+.-..+ +.-+ ...|.-+|.--..-|+ ...+..+-+.|
T Consensus 478 ~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~-----lN~v~sLe~rf 528 (660)
T COG5107 478 RINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGS-----LNNVYSLEERF 528 (660)
T ss_pred HhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcc-----hHHHHhHHHHH
Confidence 667777777777743322 1111 3567777776666666 55555554444
No 201
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=86.88 E-value=12 Score=28.49 Aligned_cols=95 Identities=13% Similarity=0.031 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCCCHHhHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE---VLFDQHTFGDIIR 114 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g---~~p~~~ty~~li~ 114 (194)
-..+-.++.+.|+..+|...|++-. .--+--|....-.+-++-...+++..|...++.+-+.. -.|| +.-.+-.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~Ll~aR 168 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHLLFAR 168 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chHHHHH
Confidence 3456666667777777777777765 23333455555555566666677777777776665543 2233 3334455
Q ss_pred HHhcCCChHHHHHHHHHhHhC
Q 029406 115 AFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~ 135 (194)
.|.-.|.+.+|..-|+...+.
T Consensus 169 ~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 169 TLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHhcCCchhHHHHHHHHHHh
Confidence 566666676676666666543
No 202
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=86.62 E-value=15 Score=32.75 Aligned_cols=94 Identities=9% Similarity=0.070 Sum_probs=59.3
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhc
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMF-FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 118 (194)
.+...+-+.|+++.|....+.-. +-.|+.+ .|-.==+.+..+|..++|..++++..+.. .||...=+--..=..+
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLr 451 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLR 451 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHH
Confidence 35556666788888887777765 2334432 22222366777788888888887776554 2354433345555567
Q ss_pred CCChHHHHHHHHHhHhCCC
Q 029406 119 SGLPSEAMFIYNEMRSSPA 137 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~g~ 137 (194)
+++.++|..+.......|.
T Consensus 452 An~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 452 ANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred ccccHHHHHHHHHhhhccc
Confidence 7888888887777766665
No 203
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=86.32 E-value=15 Score=29.17 Aligned_cols=133 Identities=11% Similarity=0.068 Sum_probs=80.7
Q ss_pred HHHHHHHHHhc-CCHhHHHHHHHHHHh---hcCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-----CCCH
Q 029406 38 LVSVLAEFQRQ-DQVFLCMKLYDVVRK---EIWYRP--DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEV-----LFDQ 106 (194)
Q Consensus 38 ~~~ll~~~~~~-~~~~~a~~~~~~m~~---~~~~~p--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-----~p~~ 106 (194)
+..+-..|-.. |+++.|++.|++-.+ ..+ .+ -..++..+...+.+.|++++|..+|++...... +++.
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 33455555566 799999999888752 222 22 144667788899999999999999999876432 2233
Q ss_pred H-hHHHHHHHHhcCCChHHHHHHHHHhHhC--CCCCC--hhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 107 H-TFGDIIRAFSDSGLPSEAMFIYNEMRSS--PATPI--SLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 107 ~-ty~~li~~~~~~g~~~~a~~l~~~M~~~--g~~p~--~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
. .|-..+-++...|+...|...|+..... ++..+ ......||.+|- .|+ . ..++.+..=|+.+..
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~-~~D-~-e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE-EGD-V-EAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH-TT--C-CCHHHHCHHHTTSS-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH-hCC-H-HHHHHHHHHHcccCc
Confidence 2 2334455777789999999999997654 44322 456666777774 444 1 124444444554433
No 204
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=86.20 E-value=6.2 Score=36.01 Aligned_cols=48 Identities=13% Similarity=0.250 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWE 95 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~ 95 (194)
|-.+-+.|+..|+++.|.++|-+-- .++-.|.+|.++|.+++|.++-.
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccHHHHHHHHH
Confidence 3345566666677777776665442 23556667777777777766543
No 205
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=86.03 E-value=9.1 Score=27.38 Aligned_cols=93 Identities=10% Similarity=0.054 Sum_probs=54.7
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCCCHHhHHHHHHHHhcC
Q 029406 42 LAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREE-VLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 42 l~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~ty~~li~~~~~~ 119 (194)
-....+.|++..|.+.|+.+..+....| ....--.|+.+|.+.+++++|...++++.+.. -.|+ +-|-..+.|++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHH
Confidence 3344567777888888887764443333 34455667777777888888877777776643 3333 2244444443332
Q ss_pred CC-----------------hHHHHHHHHHhHhC
Q 029406 120 GL-----------------PSEAMFIYNEMRSS 135 (194)
Q Consensus 120 g~-----------------~~~a~~l~~~M~~~ 135 (194)
.. ...|+.-|+.....
T Consensus 96 ~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 96 EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 21 45666666666544
No 206
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.68 E-value=6.5 Score=29.10 Aligned_cols=64 Identities=13% Similarity=-0.023 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCH--HhHHHHHHHHhcCCChHHHHHHHHHhHh
Q 029406 71 MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ--HTFGDIIRAFSDSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~--~ty~~li~~~~~~g~~~~a~~l~~~M~~ 134 (194)
...+..+-..|++.|+.++|++.|.++......|.. .++-.+|....-.+++..+.....+...
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 346778889999999999999999999987766544 4688899999999999999888877643
No 207
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=85.56 E-value=24 Score=30.88 Aligned_cols=119 Identities=10% Similarity=0.025 Sum_probs=78.4
Q ss_pred CHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhC----C----CHHHHHHHHHHHHhc-CCCCCHHhHHHHHHHHhcC
Q 029406 50 QVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARN----K----KVVEAKQVWEDLKRE-EVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 50 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~----g----~~~~a~~l~~~m~~~-g~~p~~~ty~~li~~~~~~ 119 (194)
....|..+|++..+ ..|+ ...|..+-.++... . ....+.+...+.... ....+...|.++--.+...
T Consensus 357 ~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~ 433 (517)
T PRK10153 357 SLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVK 433 (517)
T ss_pred HHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhc
Confidence 46789999999873 4465 33444332222221 1 122333333332222 2344557788776666678
Q ss_pred CChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCc
Q 029406 120 GLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 120 g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
|++++|...+++....+ |+...|..+-..+...|+ .++|.+.+......+|.
T Consensus 434 g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~-----~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 434 GKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGD-----NRLAADAYSTAFNLRPG 485 (517)
T ss_pred CCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhcCCC
Confidence 99999999999988775 688899999999999999 88888887765554444
No 208
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.53 E-value=8.9 Score=25.87 Aligned_cols=60 Identities=12% Similarity=0.017 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 53 LCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 53 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
+..+-++.+. ...+.|+.....+.+++|.|.+++.-|.++|+..+... .+....|.-++.
T Consensus 28 e~rrglN~l~-~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLF-GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHT-TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHh-ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 3444555555 67889999999999999999999999999999887542 112226666654
No 209
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.30 E-value=15 Score=32.24 Aligned_cols=108 Identities=12% Similarity=0.048 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHH
Q 029406 52 FLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNE 131 (194)
Q Consensus 52 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 131 (194)
....++|-.+-.+.+-.+|...++.|=-.|.-.|.+++|.+.|+...... +-|..+||-|=..++...+..+|+..|++
T Consensus 411 ~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~r 489 (579)
T KOG1125|consen 411 AHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNR 489 (579)
T ss_pred HHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHH
Confidence 34445555554366655666666666667778899999999999886542 33778999999999999999999999999
Q ss_pred hHhCCCCCCh-hhHHHHHHhhCCCCchHHhHH
Q 029406 132 MRSSPATPIS-LPFRVILKGLIPYPEFREKVK 162 (194)
Q Consensus 132 M~~~g~~p~~-~ty~~ll~~~~~~g~~~~~~~ 162 (194)
..+- .|.. .+...|--+|...|.+++++.
T Consensus 490 ALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 490 ALQL--QPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred HHhc--CCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 7653 5552 344444445667777544433
No 210
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=84.66 E-value=15 Score=31.76 Aligned_cols=120 Identities=11% Similarity=0.028 Sum_probs=77.3
Q ss_pred cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHH-HHHhCCCHHHHHHHHHHHHhcC---CCCCHHhHHHHHHHHhcCCChH
Q 029406 48 QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLM-MLARNKKVVEAKQVWEDLKREE---VLFDQHTFGDIIRAFSDSGLPS 123 (194)
Q Consensus 48 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~-~~~~~g~~~~a~~l~~~m~~~g---~~p~~~ty~~li~~~~~~g~~~ 123 (194)
....+.|.++++.++. --|+...|...-. .+...|++++|++.|+...... -+.....|--+.-+++-.++++
T Consensus 246 ~~~~~~a~~lL~~~~~---~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLK---RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 4567889999999973 3367666655443 3444799999999999755321 2335566777778889999999
Q ss_pred HHHHHHHHhHhC-CCCCChhhHHHHHHh-hCCCCch--HHhHHHHHhhhcccc
Q 029406 124 EAMFIYNEMRSS-PATPISLPFRVILKG-LIPYPEF--REKVKDDFLELFPDM 172 (194)
Q Consensus 124 ~a~~l~~~M~~~-g~~p~~~ty~~ll~~-~~~~g~~--~~~~~~~a~~~~~~m 172 (194)
+|...|..+.+. .+.+- +|..+.-+ +...|+. .+...++|.++|.+.
T Consensus 323 ~A~~~f~~L~~~s~WSka--~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKA--FYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHHHHhccccHHH--HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 999999999764 55433 33333322 2244441 111226666666554
No 211
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=84.64 E-value=15 Score=27.85 Aligned_cols=108 Identities=12% Similarity=-0.000 Sum_probs=80.6
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCC-
Q 029406 58 YDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSP- 136 (194)
Q Consensus 58 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g- 136 (194)
+.+..+...+-|++..-..|=.+..+.|+..+|...|.+-..--+--|..+.-.+-++....+++..|..+++.+-+..
T Consensus 76 ~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p 155 (251)
T COG4700 76 LREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP 155 (251)
T ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC
Confidence 3344335557799999899999999999999999999998665577799999999999999999999999999876543
Q ss_pred --CCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 137 --ATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 137 --~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
-.|| +.-.+-+.+...|. ...|+.-|+..
T Consensus 156 a~r~pd--~~Ll~aR~laa~g~-----~a~Aesafe~a 186 (251)
T COG4700 156 AFRSPD--GHLLFARTLAAQGK-----YADAESAFEVA 186 (251)
T ss_pred ccCCCC--chHHHHHHHHhcCC-----chhHHHHHHHH
Confidence 2344 33344455666666 55455555443
No 212
>PLN02789 farnesyltranstransferase
Probab=84.64 E-value=20 Score=29.22 Aligned_cols=65 Identities=8% Similarity=0.016 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC
Q 029406 52 FLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 52 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 119 (194)
+.++.+++.+.+ .-+-|-..|+..-.++.+.|.++++++.++++.+.+.. |...|+.....+.+.
T Consensus 125 ~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 125 NKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhc
Confidence 456666666652 12235667777777777777777777777777776644 556666666555544
No 213
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=84.24 E-value=13 Score=26.62 Aligned_cols=63 Identities=19% Similarity=0.213 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-C-CCCHHhHHHHHHHHhcCCChHHHHHHHHHhHh
Q 029406 71 MFFYRDMLMMLARNKKVVEAKQVWEDLKREE-V-LFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~-~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~ 134 (194)
...|..-...+ +.|++++|...|+.+...= . +-....--.|+.+|.+.++++.|...++...+
T Consensus 11 ~~ly~~a~~~l-~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 11 QELYQEAQEAL-QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33444444443 4556666666666665421 1 11334455566666666666666666665443
No 214
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.18 E-value=14 Score=29.30 Aligned_cols=58 Identities=9% Similarity=0.031 Sum_probs=25.5
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhc-CCCCCH-HhHHHHHHHHhcCCChHHHHHHHHHhHh
Q 029406 77 MLMMLARNKKVVEAKQVWEDLKRE-EVLFDQ-HTFGDIIRAFSDSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 77 li~~~~~~g~~~~a~~l~~~m~~~-g~~p~~-~ty~~li~~~~~~g~~~~a~~l~~~M~~ 134 (194)
|-..+...|++++|-.+|..+.+. +-.|.. .++--|-.+..+.|+.+.|-.+|++..+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344444555555555555544432 111111 2333444444445555555555554443
No 215
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=83.44 E-value=3.8 Score=21.47 Aligned_cols=26 Identities=8% Similarity=0.064 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Q 029406 73 FYRDMLMMLARNKKVVEAKQVWEDLK 98 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~l~~~m~ 98 (194)
+|+.|=..|.+.|++++|..+|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666677888888888888887743
No 216
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.26 E-value=21 Score=28.31 Aligned_cols=108 Identities=12% Similarity=0.150 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC----CCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC-CCCCCh-hhH
Q 029406 71 MFFYRDMLMMLARNKKVVEAKQVWEDLKREE----VLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS-PATPIS-LPF 144 (194)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g----~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~-g~~p~~-~ty 144 (194)
...|+.-+..| +.|++..|.+-|....+.. +.||..-| |-.++...|+++.|-.+|..+.+. +-.|.. .+.
T Consensus 142 ~~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 142 TKLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred hHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 44699999888 7778999999999988642 55665544 778899999999999999998764 333433 344
Q ss_pred HHHHHhhCCCCchHHhHHHHHhhhcccc-cccCCchhhhhhhh
Q 029406 145 RVILKGLIPYPEFREKVKDDFLELFPDM-IVYDPPEDLFEDQE 186 (194)
Q Consensus 145 ~~ll~~~~~~g~~~~~~~~~a~~~~~~m-~~~~~~~~~~~~~~ 186 (194)
--|-.+..+.|+ .+.|...|++. +.|+-++-..-..+
T Consensus 219 lKlg~~~~~l~~-----~d~A~atl~qv~k~YP~t~aA~~Ak~ 256 (262)
T COG1729 219 LKLGVSLGRLGN-----TDEACATLQQVIKRYPGTDAAKLAKV 256 (262)
T ss_pred HHHHHHHHHhcC-----HHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 445556667788 88899888886 45665555444433
No 217
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.98 E-value=3.5 Score=21.74 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=20.3
Q ss_pred HHhHHHHHHHHhcCCChHHHHHHHHHhH
Q 029406 106 QHTFGDIIRAFSDSGLPSEAMFIYNEMR 133 (194)
Q Consensus 106 ~~ty~~li~~~~~~g~~~~a~~l~~~M~ 133 (194)
..+++.|-..|...|++++|..++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 3567777888888888888888877753
No 218
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.97 E-value=8.3 Score=31.07 Aligned_cols=90 Identities=17% Similarity=0.192 Sum_probs=67.5
Q ss_pred HHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCC-hhhHHHHHHhhCCCCchHH
Q 029406 81 LARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPI-SLPFRVILKGLIPYPEFRE 159 (194)
Q Consensus 81 ~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~-~~ty~~ll~~~~~~g~~~~ 159 (194)
..+.+++.+|+..|.+..+.. +-|.+-|..=-.+|++.|.++.|++=-+.-.. +.|. ..+|.-|=.+|...|+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk--- 164 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGK--- 164 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCc---
Confidence 457899999999999988764 34888999999999999999998874444322 2343 4688888888999999
Q ss_pred hHHHHHhhhcccccccCCc
Q 029406 160 KVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 160 ~~~~~a~~~~~~m~~~~~~ 178 (194)
...|.+.|+......|-
T Consensus 165 --~~~A~~aykKaLeldP~ 181 (304)
T KOG0553|consen 165 --YEEAIEAYKKALELDPD 181 (304)
T ss_pred --HHHHHHHHHhhhccCCC
Confidence 77777776655444443
No 219
>PRK15331 chaperone protein SicA; Provisional
Probab=82.64 E-value=8.3 Score=28.31 Aligned_cols=93 Identities=9% Similarity=-0.035 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCC-CCChhhHHHHHHhh
Q 029406 73 FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPA-TPISLPFRVILKGL 151 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~-~p~~~ty~~ll~~~ 151 (194)
.|..--+.| ..|++++|..+|.-+...+.- |..-|..|-.+|-..+.++.|..+|...-.-+. .|.+..|. -.++
T Consensus 40 iY~~Ay~~y-~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a--gqC~ 115 (165)
T PRK15331 40 LYAHAYEFY-NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT--GQCQ 115 (165)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH--HHHH
Confidence 344444444 689999999999998876533 555567777777777999999999997644332 24443333 3466
Q ss_pred CCCCchHHhHHHHHhhhcccccc
Q 029406 152 IPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 152 ~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
...|+ ...|...|.....
T Consensus 116 l~l~~-----~~~A~~~f~~a~~ 133 (165)
T PRK15331 116 LLMRK-----AAKARQCFELVNE 133 (165)
T ss_pred HHhCC-----HHHHHHHHHHHHh
Confidence 67788 7777777775544
No 220
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=82.57 E-value=4.8 Score=22.92 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=16.7
Q ss_pred cCCChHHHHHHHHHhHhCCCCCChhhHHHHHH
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILK 149 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~ 149 (194)
+.|-+.++..+++.|.+.|+..+...|..+++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 44444555555555555555555555554443
No 221
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=82.37 E-value=5.7 Score=21.74 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=14.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 109 FGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 109 y~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
|..+-..|...|++++|.++|+...+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444555555555555555555555443
No 222
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=82.11 E-value=1.6 Score=30.86 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=23.5
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhh
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~ 151 (194)
-+.|.-.+|+.+|..|.++|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456677888888888888888874 56665543
No 223
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=81.92 E-value=24 Score=30.46 Aligned_cols=135 Identities=14% Similarity=0.096 Sum_probs=90.5
Q ss_pred hchhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCH-----HHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCC
Q 029406 33 LLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDM-----FFYRDMLMMLAR----NKKVVEAKQVWEDLKREEVL 103 (194)
Q Consensus 33 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~ 103 (194)
++|+.+..++..++=.|+=+.+++.+..-.+..+++-.. -.|+.++..++- ....+.|.+++..+... -
T Consensus 186 lLPp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--y 263 (468)
T PF10300_consen 186 LLPPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--Y 263 (468)
T ss_pred hCCHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--C
Confidence 456777788999988999999999988886555665433 356666665554 35678899999998765 6
Q ss_pred CCHHhHHHHHHHH-hcCCChHHHHHHHHHhHhC--CCC-CChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 104 FDQHTFGDIIRAF-SDSGLPSEAMFIYNEMRSS--PAT-PISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 104 p~~~ty~~li~~~-~~~g~~~~a~~l~~~M~~~--g~~-p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
|+...|.-.-.-+ ...|++++|.+.|+..... .++ .....|--+.-.+.-..+ +++|.+.|..+..
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~-----w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHD-----WEEAAEYFLRLLK 333 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHch-----HHHHHHHHHHHHh
Confidence 7877775554433 4459999999999976542 222 122333333344445566 7777777766543
No 224
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=81.77 E-value=8.2 Score=34.56 Aligned_cols=74 Identities=15% Similarity=0.259 Sum_probs=43.8
Q ss_pred HHHhcCCHhHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC
Q 029406 44 EFQRQDQVFLCMKLYDVVRKEIWYRPD--MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 44 ~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 119 (194)
..+++-+.-..+.+=.-++..-+.-|| ...|++|-+.|.+.|++++|.++|.+-... ..++.-|+.+.++|+..
T Consensus 219 lis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~F 294 (835)
T KOG2047|consen 219 LISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQF 294 (835)
T ss_pred HHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHH
Confidence 334444444444444444311122345 457888888888888888888888876554 23444566666666543
No 225
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.61 E-value=28 Score=28.52 Aligned_cols=127 Identities=15% Similarity=0.103 Sum_probs=71.9
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHH--HHHHHHhCCCHHHHHHHHHHHHhc--------------
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRD--MLMMLARNKKVVEAKQVWEDLKRE-------------- 100 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~--li~~~~~~g~~~~a~~l~~~m~~~-------------- 100 (194)
.+..+-.||-...++..|-..|+++- + ..|-..-|.. .=+ +-+.+.+.+|+++...|...
T Consensus 46 gLSlLgyCYY~~Q~f~~AA~CYeQL~-q--l~P~~~qYrlY~AQS-LY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAI 121 (459)
T KOG4340|consen 46 GLSLLGYCYYRLQEFALAAECYEQLG-Q--LHPELEQYRLYQAQS-LYKACIYADALRVAFLLLDNPALHSRVLQLQAAI 121 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-h--hChHHHHHHHHHHHH-HHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34445555666778888888888875 2 3343333321 112 22445566666665555321
Q ss_pred ----CCCC-------------CHHhHHHHHHHHhcCCChHHHHHHHHHhHhC-CCCCChhhHHHHHHhhCCCCchHHhHH
Q 029406 101 ----EVLF-------------DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS-PATPISLPFRVILKGLIPYPEFREKVK 162 (194)
Q Consensus 101 ----g~~p-------------~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~-g~~p~~~ty~~ll~~~~~~g~~~~~~~ 162 (194)
+--| +..+.+..--...+.|.++.|.+-|+...+. |+.| ...||.-+-.| +.|+ .
T Consensus 122 kYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaHy-~~~q-----y 194 (459)
T KOG4340|consen 122 KYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAHY-SSRQ-----Y 194 (459)
T ss_pred hcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHH-hhhh-----H
Confidence 1001 2222222222344678999999999987664 6665 56788877776 4566 6
Q ss_pred HHHhhhcccccc
Q 029406 163 DDFLELFPDMIV 174 (194)
Q Consensus 163 ~~a~~~~~~m~~ 174 (194)
..|.+...++..
T Consensus 195 asALk~iSEIie 206 (459)
T KOG4340|consen 195 ASALKHISEIIE 206 (459)
T ss_pred HHHHHHHHHHHH
Confidence 666666655543
No 226
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=81.60 E-value=26 Score=28.20 Aligned_cols=89 Identities=9% Similarity=0.041 Sum_probs=61.0
Q ss_pred HHHHHHHHhcCCHhHHHHH-HHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 39 VSVLAEFQRQDQVFLCMKL-YDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 39 ~~ll~~~~~~~~~~~a~~~-~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+-=|.+++.-++|.++... ++.......++| ...-..|-.|.+.+.+..++++-.......-.-+...|.++...|.
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyL 164 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYL 164 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHH
Confidence 3458899999999887654 333322223444 4445566778899999999888877665432224445999888887
Q ss_pred cC-----CChHHHHHHH
Q 029406 118 DS-----GLPSEAMFIY 129 (194)
Q Consensus 118 ~~-----g~~~~a~~l~ 129 (194)
.+ |.+++|.++.
T Consensus 165 l~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 165 LHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHhccccHHHHHHHH
Confidence 76 9999988876
No 227
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=81.60 E-value=23 Score=29.76 Aligned_cols=106 Identities=12% Similarity=-0.011 Sum_probs=70.3
Q ss_pred HHHhcCCHhHHHHHHHHHHhh----cCC---------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHH
Q 029406 44 EFQRQDQVFLCMKLYDVVRKE----IWY---------RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFG 110 (194)
Q Consensus 44 ~~~~~~~~~~a~~~~~~m~~~----~~~---------~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~ 110 (194)
.+.+.|++.+|..-|+...+- .+. ..-..+++-+.-.|.+.+.+.+|+...++....+ ++|....=
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALy 295 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALY 295 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHH
Confidence 355677777777776663211 111 1234566777778888999999999888887764 33555554
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhC
Q 029406 111 DIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152 (194)
Q Consensus 111 ~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~ 152 (194)
-==.+|...|+++.|...|+.+.+. .|+-..-+.=|..|.
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLK 335 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 5556778889999999999998765 455455444444443
No 228
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=81.58 E-value=25 Score=27.93 Aligned_cols=62 Identities=16% Similarity=-0.073 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCCHH---HHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 73 FYRDMLMMLARNKKVV---EAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~---~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
+...+..+|...+..+ +|..+.+.+... +.-...+|-.-|..+.+.++.+.+.+.+..|..+
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3444555555544433 333344444222 1112334444455555556666666666666554
No 229
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=81.44 E-value=18 Score=31.28 Aligned_cols=62 Identities=18% Similarity=0.268 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCCCHHhHHHHHHHHhcCCChHHHHHHHHH
Q 029406 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE-VLFDQHTFGDIIRAFSDSGLPSEAMFIYNE 131 (194)
Q Consensus 69 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~ty~~li~~~~~~g~~~~a~~l~~~ 131 (194)
-=+..|...|+..-+..-.+.|..+|.+..+.| +.+++..|++.|.-++ .|+...|..+|+.
T Consensus 395 k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifel 457 (660)
T COG5107 395 KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFEL 457 (660)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHH
Confidence 346788889999988888999999999999999 7789999999999876 4677888898886
No 230
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=80.99 E-value=20 Score=28.78 Aligned_cols=103 Identities=7% Similarity=0.002 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCCCHHhHHHHHHHHhcC---CChHHHHHHHHHhHhCCCCCChhhHH
Q 029406 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKRE-EVLFDQHTFGDIIRAFSDS---GLPSEAMFIYNEMRSSPATPISLPFR 145 (194)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~~~ty~~li~~~~~~---g~~~~a~~l~~~M~~~g~~p~~~ty~ 145 (194)
|...|-.|=..|.+.|++..|..=|..-.+- |- |...+..+-.++... ..-.++..+|+++.... +-|..+-.
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~--n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD--NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 5666777777777777777777766655442 22 233333333332222 23356666777765542 23445555
Q ss_pred HHHHhhCCCCchHHhHHHHHhhhcccccccCCchh
Q 029406 146 VILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180 (194)
Q Consensus 146 ~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~ 180 (194)
.|-..+...|+ ..+|...++.|....||.+
T Consensus 232 lLA~~afe~g~-----~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 232 LLAFAAFEQGD-----YAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHccc-----HHHHHHHHHHHHhcCCCCC
Confidence 55566666677 6666666666666666555
No 231
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=80.98 E-value=6 Score=25.29 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=31.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCCC--HHhHHHHHHHHhcCCChHHHHH
Q 029406 77 MLMMLARNKKVVEAKQVWEDLKREEVLFD--QHTFGDIIRAFSDSGLPSEAMF 127 (194)
Q Consensus 77 li~~~~~~g~~~~a~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~a~~ 127 (194)
.+..| ...+.++|+..|....+.-..|. -.+++.++.+|+.-|++.+++.
T Consensus 13 GlkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 13 GLKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455 55667777777776665433322 1467777777777777777666
No 232
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=80.78 E-value=11 Score=34.05 Aligned_cols=94 Identities=10% Similarity=0.045 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHhCCCHH------HHHHHHHHHHhcCCCCCHHh
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRK-EIWYRPDMFFYRDMLMMLARNKKVV------EAKQVWEDLKREEVLFDQHT 108 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~~p~~~~~~~li~~~~~~g~~~------~a~~l~~~m~~~g~~p~~~t 108 (194)
++-.+++.+|..+|++..+.++++.+.. ..|-+.-...||..|+-..+.|.++ .|..++++.. +.-|..|
T Consensus 29 ~~~~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t 105 (1117)
T COG5108 29 SGTASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLT 105 (1117)
T ss_pred cchHHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchH
Confidence 4455899999999999999999888852 2244445678888888888888753 3333333332 4457778
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHh
Q 029406 109 FGDIIRAFSDSGLPSEAMFIYNEM 132 (194)
Q Consensus 109 y~~li~~~~~~g~~~~a~~l~~~M 132 (194)
|..++.+-..--.-.-+.-++.+.
T Consensus 106 ~all~~~sln~t~~~l~~pvl~~~ 129 (1117)
T COG5108 106 YALLCQASLNPTQRQLGLPVLHEL 129 (1117)
T ss_pred HHHHHHhhcChHhHHhccHHHHHH
Confidence 887777655533333444444443
No 233
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=80.64 E-value=45 Score=30.31 Aligned_cols=85 Identities=7% Similarity=-0.080 Sum_probs=54.3
Q ss_pred cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHH
Q 029406 48 QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127 (194)
Q Consensus 48 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 127 (194)
+|..+.-..+|+... ..++-....|-..-+-+...|++..|..++.+..+..=. +...|-+.+...+.+..++.|..
T Consensus 563 hgt~Esl~Allqkav--~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~ 639 (913)
T KOG0495|consen 563 HGTRESLEALLQKAV--EQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARD 639 (913)
T ss_pred cCcHHHHHHHHHHHH--HhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHH
Confidence 455555555666554 223334555555556666677777777777766654322 56677777777777888888888
Q ss_pred HHHHhHhC
Q 029406 128 IYNEMRSS 135 (194)
Q Consensus 128 l~~~M~~~ 135 (194)
+|.+.+..
T Consensus 640 llakar~~ 647 (913)
T KOG0495|consen 640 LLAKARSI 647 (913)
T ss_pred HHHHHhcc
Confidence 88776654
No 234
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=80.59 E-value=33 Score=30.43 Aligned_cols=62 Identities=16% Similarity=0.243 Sum_probs=49.2
Q ss_pred CchHHHHHHHHHHHhcCCch-------hHHHHHHHHhhhhch-hhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 029406 1 MSKESLMVAKELKRLQSHPV-------RFDRFIKSHVSRLLK-SDLVSVLAEFQRQDQVFLCMKLYDVVR 62 (194)
Q Consensus 1 ~~~~a~~vi~~l~~~~~~~~-------~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~ 62 (194)
+|.+|-++|..|++-..+.+ ++++.++-+.+.+.- .|...+|.+|.+-+.-.+=.++|+++.
T Consensus 130 ~~qe~kslWEkLR~k~~~ke~R~klv~el~~likg~i~~lv~aHDtSRViQt~Vky~s~~~r~~if~eL~ 199 (652)
T KOG2050|consen 130 ISQEAKSLWEKLRRKTTPKEERDKLVSELYKLIKGKISKLVFAHDTSRVIQTCVKYGSEAQREQIFEELL 199 (652)
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHhhhHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 36788999999998888543 566666666655543 678889999999999999999999997
No 235
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=80.50 E-value=16 Score=27.11 Aligned_cols=58 Identities=17% Similarity=0.063 Sum_probs=29.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhc-CCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhH
Q 029406 76 DMLMMLARNKKVVEAKQVWEDLKRE-EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133 (194)
Q Consensus 76 ~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~ 133 (194)
..+.......+.+...+..+...+. ...|+..+|..++..+...|+.++|.++.+++.
T Consensus 113 ~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 113 ALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333444444444444443332 245566666666666666666666655555554
No 236
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=80.44 E-value=12 Score=26.33 Aligned_cols=60 Identities=12% Similarity=0.123 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHH
Q 029406 89 EAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILK 149 (194)
Q Consensus 89 ~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~ 149 (194)
+..+-++.+....+.|+.....+.+++|-+.+++..|.++|+..+.+ +.+.-..|-.+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 44555566667788899999999999999999999999999888765 3333334655544
No 237
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.34 E-value=6.3 Score=20.67 Aligned_cols=28 Identities=11% Similarity=0.054 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 029406 72 FFYRDMLMMLARNKKVVEAKQVWEDLKR 99 (194)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~l~~~m~~ 99 (194)
.+++.|=..|...|++++|..++.+...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888888888999999888887764
No 238
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=80.05 E-value=40 Score=29.40 Aligned_cols=75 Identities=5% Similarity=0.048 Sum_probs=50.8
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC-CHHhHHHHHHH
Q 029406 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF-DQHTFGDIIRA 115 (194)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~ 115 (194)
+-.++-+.|+.++|++.|.+|.+.....-+......||..+-..+.+.++..++.+-.+-..+. =..+|++.+-.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 3334445799999999999996433322245567778999999999999999999874332222 23457776543
No 239
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=79.66 E-value=30 Score=27.81 Aligned_cols=113 Identities=11% Similarity=0.051 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMF-FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
..+.-+=..|...|+...|..-|..-..-.|-.|+.. -|...+..-....+..++..+|+++.... .-|..+-.-|-.
T Consensus 157 egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~lLA~ 235 (287)
T COG4235 157 EGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSLLAF 235 (287)
T ss_pred hhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHHHHH
Confidence 4566677788899999999999999864555555533 23333333333456789999999998764 337777888888
Q ss_pred HHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhh
Q 029406 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~ 151 (194)
.+...|++.+|...|+.|.+. -|....+..+|..-
T Consensus 236 ~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie~~ 270 (287)
T COG4235 236 AAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIERS 270 (287)
T ss_pred HHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHHHH
Confidence 999999999999999999877 23334455555443
No 240
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=79.20 E-value=25 Score=30.61 Aligned_cols=70 Identities=16% Similarity=0.202 Sum_probs=52.1
Q ss_pred HHHHhCCCHHHHHHHHHHHHhc-CCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCC--hhhHHHHHH
Q 029406 79 MMLARNKKVVEAKQVWEDLKRE-EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPI--SLPFRVILK 149 (194)
Q Consensus 79 ~~~~~~g~~~~a~~l~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~--~~ty~~ll~ 149 (194)
..+-+.|+.++|.+.|.+|.+. ...-+......||.+|...+.+.++..++..-.+-.. |+ ...|++.+-
T Consensus 267 mCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l-pkSAti~YTaALL 339 (539)
T PF04184_consen 267 MCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL-PKSATICYTAALL 339 (539)
T ss_pred HHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC-CchHHHHHHHHHH
Confidence 3444679999999999999754 3333556888999999999999999999998754322 33 456776653
No 241
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=78.99 E-value=2.1 Score=30.29 Aligned_cols=31 Identities=10% Similarity=0.143 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 84 NKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 84 ~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
-|.-.+|-.+|.+|...|-+|| .|+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 3556788999999999999998 788888764
No 242
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=78.81 E-value=40 Score=28.66 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=25.8
Q ss_pred HHHHHHHHhhhhchhhHHHHHHHH---Hh--cCCHhHHHHHHHHHH
Q 029406 22 FDRFIKSHVSRLLKSDLVSVLAEF---QR--QDQVFLCMKLYDVVR 62 (194)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~ll~~~---~~--~~~~~~a~~~~~~m~ 62 (194)
+.+-|-...+.++..|--.+|+.+ .. .|+++.|.+-|+.|.
T Consensus 102 lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl 147 (531)
T COG3898 102 LARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAML 147 (531)
T ss_pred HHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHh
Confidence 444454555555555544444444 22 589999999999996
No 243
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=77.98 E-value=10 Score=21.50 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=15.7
Q ss_pred hCCCHHHHHHHHHHHHhcCCCCCHHhHHHHH
Q 029406 83 RNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113 (194)
Q Consensus 83 ~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li 113 (194)
+.|...++..++++|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444445555555555555555555554444
No 244
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=77.76 E-value=26 Score=27.33 Aligned_cols=75 Identities=9% Similarity=-0.057 Sum_probs=54.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCCCHHhHHHHHHHH
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE--EVLFDQHTFGDIIRAF 116 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g~~p~~~ty~~li~~~ 116 (194)
..|..+.+.+.+.+|+.....-. ...+.|..+-..++..||-.|++++|+.-++-..+. ...+-..+|..+|.+-
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qV--kakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQV--KAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHH--hcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 44667778888889988876664 224456777788999999999999997666555432 3556677888888763
No 245
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=77.41 E-value=28 Score=26.12 Aligned_cols=125 Identities=12% Similarity=0.074 Sum_probs=72.8
Q ss_pred hhhchhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh-------------CCCHHHHHHHHHHH
Q 029406 31 SRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLAR-------------NKKVVEAKQVWEDL 97 (194)
Q Consensus 31 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-------------~g~~~~a~~l~~~m 97 (194)
++..+.....+..++.+.|++..|...|+.+.+...-.|.. -+...+.+.+. .+...+|...|..+
T Consensus 38 s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~l 116 (203)
T PF13525_consen 38 SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEEL 116 (203)
T ss_dssp STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHH
Confidence 55666778889999999999999999999987555555543 23333333321 12245667777666
Q ss_pred Hhc----CCCCCHHh------------HHHHHHHHhcCCChHHHHHHHHHhHhC--CCCCChhhHHHHHHhhCCCCc
Q 029406 98 KRE----EVLFDQHT------------FGDIIRAFSDSGLPSEAMFIYNEMRSS--PATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 98 ~~~----g~~p~~~t------------y~~li~~~~~~g~~~~a~~l~~~M~~~--g~~p~~~ty~~ll~~~~~~g~ 156 (194)
... ...++... --.+..-|.+.|.+..|..-++.+.++ +.+-.....-.++.+|-+.|.
T Consensus 117 i~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~ 193 (203)
T PF13525_consen 117 IKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGL 193 (203)
T ss_dssp HHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-
T ss_pred HHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCC
Confidence 643 12222211 112456678888888888888887765 111112344566677777776
No 246
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=77.39 E-value=57 Score=29.68 Aligned_cols=86 Identities=10% Similarity=0.004 Sum_probs=65.3
Q ss_pred HhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHH
Q 029406 46 QRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEA 125 (194)
Q Consensus 46 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a 125 (194)
-..|++..|..+++... +.. +-+...|-.-++.-..+..+++|..+|.+... ..|+...|---++..--.++.++|
T Consensus 595 w~agdv~~ar~il~~af-~~~-pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAF-EAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HhcCCcHHHHHHHHHHH-HhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHH
Confidence 34789999999988886 333 22677888999999999999999999988755 456777777666666667888888
Q ss_pred HHHHHHhHhC
Q 029406 126 MFIYNEMRSS 135 (194)
Q Consensus 126 ~~l~~~M~~~ 135 (194)
.+++++-.+.
T Consensus 671 ~rllEe~lk~ 680 (913)
T KOG0495|consen 671 LRLLEEALKS 680 (913)
T ss_pred HHHHHHHHHh
Confidence 8887765443
No 247
>PRK04841 transcriptional regulator MalT; Provisional
Probab=77.38 E-value=40 Score=31.28 Aligned_cols=123 Identities=7% Similarity=-0.086 Sum_probs=75.5
Q ss_pred HHHhcCCHhHHHHHHHHHHhh---cCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh----cCCC--C-CHHhHHHH
Q 029406 44 EFQRQDQVFLCMKLYDVVRKE---IWYR-PDMFFYRDMLMMLARNKKVVEAKQVWEDLKR----EEVL--F-DQHTFGDI 112 (194)
Q Consensus 44 ~~~~~~~~~~a~~~~~~m~~~---~~~~-p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~----~g~~--p-~~~ty~~l 112 (194)
.+...|+++.|...++..... .+-. +-...++.+-..+...|++++|...+.+... .+.. | ....+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 345689999999998887521 1111 1123445555677789999999998887654 2221 1 23345555
Q ss_pred HHHHhcCCChHHHHHHHHHhHhC--CCCCC--hhhHHHHHHhhCCCCchHHhHHHHHhhhccc
Q 029406 113 IRAFSDSGLPSEAMFIYNEMRSS--PATPI--SLPFRVILKGLIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 113 i~~~~~~g~~~~a~~l~~~M~~~--g~~p~--~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~ 171 (194)
-..+...|+++.|...+++.... ...+. ...+..+...+...|+ .+.|.+.+..
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~-----~~~A~~~l~~ 637 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGD-----LDNARRYLNR 637 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCC-----HHHHHHHHHH
Confidence 66677789999999998876442 11122 3344445556667788 5555555443
No 248
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=76.88 E-value=18 Score=26.84 Aligned_cols=53 Identities=6% Similarity=-0.106 Sum_probs=30.7
Q ss_pred cCCChHHHHHHHHHhHhC-CCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccccc
Q 029406 118 DSGLPSEAMFIYNEMRSS-PATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVY 175 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~-g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~ 175 (194)
...+.+......+.+.+. ...|+..+|..++..+...|+ .++|.++...+...
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~-----~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGD-----PEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHh
Confidence 444444444444444332 446777777777777777777 66666666655443
No 249
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=76.73 E-value=7.7 Score=21.20 Aligned_cols=28 Identities=11% Similarity=-0.015 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 029406 73 FYRDMLMMLARNKKVVEAKQVWEDLKRE 100 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~l~~~m~~~ 100 (194)
+|..+=..|.+.|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4667778899999999999999999876
No 250
>PRK04841 transcriptional regulator MalT; Provisional
Probab=75.95 E-value=46 Score=30.89 Aligned_cols=121 Identities=7% Similarity=-0.049 Sum_probs=75.5
Q ss_pred HHhcCCHhHHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHhc----C-CCCCHHhHHHHHHH
Q 029406 45 FQRQDQVFLCMKLYDVVRKEIWYRPDM----FFYRDMLMMLARNKKVVEAKQVWEDLKRE----E-VLFDQHTFGDIIRA 115 (194)
Q Consensus 45 ~~~~~~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g-~~p~~~ty~~li~~ 115 (194)
+...|+++.|...++... ...-..+. ...+.+-..+...|++++|...+.+.... | ..+-..+++.+-..
T Consensus 462 ~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 462 AINDGDPEEAERLAELAL-AELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHhCCCHHHHHHHHHHHH-hcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 346899999999999876 22111121 23344555667789999999999887642 1 11122355666677
Q ss_pred HhcCCChHHHHHHHHHhHh----CCCC--C-ChhhHHHHHHhhCCCCchHHhHHHHHhhhccc
Q 029406 116 FSDSGLPSEAMFIYNEMRS----SPAT--P-ISLPFRVILKGLIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~----~g~~--p-~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~ 171 (194)
+...|+++.|...+++... .|.. | ....+..+-..+...|+ .+.|...+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~-----~~~A~~~~~~ 598 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWAR-----LDEAEQCARK 598 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcC-----HHHHHHHHHH
Confidence 8889999999998887643 2321 1 22334444455666688 6666555444
No 251
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=75.08 E-value=49 Score=27.77 Aligned_cols=80 Identities=14% Similarity=0.100 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCC-CC-CHHHHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCCCHHhHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWY-RP-DMFFYRDMLMMLAR---NKKVVEAKQVWEDLKREEVLFDQHTFGDI 112 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~p-~~~~~~~li~~~~~---~g~~~~a~~l~~~m~~~g~~p~~~ty~~l 112 (194)
...++-+|-...+|+..+++.+.+..-..+ .+ ....--..--++.+ .|+.++|++++..+....-.++..||..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 346777788889999999999999732111 11 11111122334445 79999999999997666666777777776
Q ss_pred HHHHh
Q 029406 113 IRAFS 117 (194)
Q Consensus 113 i~~~~ 117 (194)
-..|-
T Consensus 224 GRIyK 228 (374)
T PF13281_consen 224 GRIYK 228 (374)
T ss_pred HHHHH
Confidence 66553
No 252
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=74.78 E-value=10 Score=30.64 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=33.1
Q ss_pred CCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHH
Q 029406 67 YRPDMF-FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113 (194)
Q Consensus 67 ~~p~~~-~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li 113 (194)
+.||+. -||..|..-.+.|++++|++|.++.++.|+.-=..+|-..+
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 345544 44588888888888888888888888888775555554444
No 253
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=74.52 E-value=24 Score=23.89 Aligned_cols=86 Identities=15% Similarity=0.003 Sum_probs=58.7
Q ss_pred CCHhHHHHHHHHHHhhcCCCCCHHHHHHHH--HHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHH
Q 029406 49 DQVFLCMKLYDVVRKEIWYRPDMFFYRDML--MMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126 (194)
Q Consensus 49 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~li--~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~ 126 (194)
...++|..+-+++. .. ++..-...|| ..+...|++++|+.+.+.+ .-||...|-+|-.+ +.|..+...
T Consensus 19 HcHqEA~tIAdwL~-~~---~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~ 88 (115)
T TIGR02508 19 HCHQEANTIADWLH-LK---GESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALE 88 (115)
T ss_pred hHHHHHHHHHHHHh-cC---CchHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHH
Confidence 34577888888886 22 2223333344 3456679999998887755 47899998888766 788888888
Q ss_pred HHHHHhHhCCCCCChhhHH
Q 029406 127 FIYNEMRSSPATPISLPFR 145 (194)
Q Consensus 127 ~l~~~M~~~g~~p~~~ty~ 145 (194)
.-+..|..+| .|...+|.
T Consensus 89 ~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 89 SRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHHHhCC-CHHHHHHH
Confidence 8888888776 44444443
No 254
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=74.12 E-value=42 Score=26.53 Aligned_cols=73 Identities=10% Similarity=0.061 Sum_probs=54.9
Q ss_pred HhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-cCCCCCHHhHHHHHHHHhcC
Q 029406 46 QRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKR-EEVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 46 ~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~g~~p~~~ty~~li~~~~~~ 119 (194)
...|++++|...|+.+.+++...| ...+--.++.++-+.+++++|+..+++..+ .+-.||.. |-.-|.|++..
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~~ 119 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSYF 119 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHh
Confidence 478999999999999986665555 456677788888899999999999998775 44555543 55555555543
No 255
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.10 E-value=43 Score=26.63 Aligned_cols=116 Identities=12% Similarity=0.029 Sum_probs=63.8
Q ss_pred hcCCHhHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC----CCCCH-HhHHHHHHHHh
Q 029406 47 RQDQVFLCMKLYDVVRKE----IWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE----VLFDQ-HTFGDIIRAFS 117 (194)
Q Consensus 47 ~~~~~~~a~~~~~~m~~~----~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g----~~p~~-~ty~~li~~~~ 117 (194)
++.++++|+++|+.-..- ...+.-...|..+=+++.+...+.+|-..|.+-.... --|+. ..|-+.|-.|.
T Consensus 122 env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L 201 (308)
T KOG1585|consen 122 ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYL 201 (308)
T ss_pred hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHh
Confidence 344666666666654310 0111112234445555666666666655444332111 11121 23666666777
Q ss_pred cCCChHHHHHHHHHhHh---CCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhh
Q 029406 118 DSGLPSEAMFIYNEMRS---SPATPISLPFRVILKGLIPYPEFREKVKDDFLEL 168 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~---~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~ 168 (194)
-..++..|..+++.=-. ..-+-+..+...||.+|- .|+ .+.+..+
T Consensus 202 ~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD-----~E~~~kv 249 (308)
T KOG1585|consen 202 YAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGD-----IEEIKKV 249 (308)
T ss_pred hHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCC-----HHHHHHH
Confidence 78899999999987322 222346789999999995 566 5555444
No 256
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=74.03 E-value=55 Score=30.68 Aligned_cols=130 Identities=13% Similarity=0.032 Sum_probs=77.0
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCC--------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYR--------PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQH 107 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--------p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 107 (194)
..+..+-..|.+..+++-|.-.+-+|..-+|.+ |+ .+=.-.--.-...|+.++|..++.+-++.
T Consensus 758 ~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~------- 829 (1416)
T KOG3617|consen 758 SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY------- 829 (1416)
T ss_pred HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH-------
Confidence 345566667777777777777777765323322 22 11122222345678899999999888765
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc--cccCCchhhhh
Q 029406 108 TFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM--IVYDPPEDLFE 183 (194)
Q Consensus 108 ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m--~~~~~~~~~~~ 183 (194)
..|=..|-..|.+++|+++-+.=-.-.. ..||..-..-+...++ .+.|.+.|++- +.+.+|.-+.+
T Consensus 830 --DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~D-----i~~AleyyEK~~~hafev~rmL~e 897 (1416)
T KOG3617|consen 830 --DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRD-----IEAALEYYEKAGVHAFEVFRMLKE 897 (1416)
T ss_pred --HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhcc-----HHHHHHHHHhcCChHHHHHHHHHh
Confidence 3344556677899998887654211111 2566555556666677 88888888754 33444444444
No 257
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=74.01 E-value=16 Score=33.08 Aligned_cols=115 Identities=7% Similarity=-0.065 Sum_probs=60.6
Q ss_pred hcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC-CHHhHHHHHHHHhcCCChHHH
Q 029406 47 RQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF-DQHTFGDIIRAFSDSGLPSEA 125 (194)
Q Consensus 47 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a 125 (194)
+++++.++.+.|+.-... .+.-..+|-.+=.+..+.++++.|.+-|..-..- .| +...||.+=.+|.+.+.-.+|
T Consensus 497 ~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra 572 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRA 572 (777)
T ss_pred cchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHH
Confidence 356666666666655421 1123445554444555566666666666654332 33 344577777777777777777
Q ss_pred HHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccc
Q 029406 126 MFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 126 ~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~ 171 (194)
+..+.+..+.+.. +...|-.-+....+-|. +++|.+.++.
T Consensus 573 ~~~l~EAlKcn~~-~w~iWENymlvsvdvge-----~eda~~A~~r 612 (777)
T KOG1128|consen 573 FRKLKEALKCNYQ-HWQIWENYMLVSVDVGE-----FEDAIKAYHR 612 (777)
T ss_pred HHHHHHHhhcCCC-CCeeeechhhhhhhccc-----HHHHHHHHHH
Confidence 7766666555422 22333333333445555 5555444433
No 258
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=73.85 E-value=74 Score=29.26 Aligned_cols=112 Identities=10% Similarity=-0.017 Sum_probs=64.2
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---------C--------------------CCCHHhHHHHHHHH
Q 029406 66 WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE---------V--------------------LFDQHTFGDIIRAF 116 (194)
Q Consensus 66 ~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g---------~--------------------~p~~~ty~~li~~~ 116 (194)
++..+......|+..+ .|+..+++.+++...... + .++..+.++++.+
T Consensus 192 ~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ks- 268 (725)
T PRK13341 192 KVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQQRAVLYDKEGDAHFDTISAFIKS- 268 (725)
T ss_pred ccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHH-
Confidence 3445555555555543 677777777776643210 0 0111223333333
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCchh
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~ 180 (194)
++.++++.|...+..|.+.|..|....-..++.+...-|.-.......+...+.-....|.|+-
T Consensus 269 irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~pE~ 332 (725)
T PRK13341 269 LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGLPEG 332 (725)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCCcch
Confidence 3568999999999999999999988777777766654443111223333333444445666654
No 259
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.33 E-value=44 Score=30.99 Aligned_cols=109 Identities=12% Similarity=0.068 Sum_probs=69.9
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH----hCCCHHHHHHHHHHHHhcCCCCCHHhHH
Q 029406 35 KSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLA----RNKKVVEAKQVWEDLKREEVLFDQHTFG 110 (194)
Q Consensus 35 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~g~~~~a~~l~~~m~~~g~~p~~~ty~ 110 (194)
+.++-.-|+.+++...++.|+.+-+.-. .|..+-..++..|+ +.|++++|.+-+.+-... +.| +
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~~~------~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s 401 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKSQH------LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----S 401 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----H
Confidence 3556678888888888888888766554 45555556665554 468888887755543221 233 2
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCc
Q 029406 111 DIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 111 ~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~ 156 (194)
.+|.-|.....+.+--.+++.+.++|.. +...-+.|+++|.+.++
T Consensus 402 ~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd 446 (933)
T KOG2114|consen 402 EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKD 446 (933)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcc
Confidence 3456666666666666677777777654 44445667777777666
No 260
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=72.71 E-value=50 Score=27.68 Aligned_cols=98 Identities=13% Similarity=0.039 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCCCHHhHHHHHHHHhc---CCChH
Q 029406 53 LCMKLYDVVRKEIWYRPD---MFFYRDMLMMLARNKKVVEAKQVWEDLKREE---VLFDQHTFGDIIRAFSD---SGLPS 123 (194)
Q Consensus 53 ~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g---~~p~~~ty~~li~~~~~---~g~~~ 123 (194)
+..+.+..++.+.+ .|. ..+.-.|+-.|....+++...++++.|.... +.-....--....++-+ .|+.+
T Consensus 121 ~l~~~L~~i~~rLd-~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre 199 (374)
T PF13281_consen 121 ELAKELRRIRQRLD-DPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDRE 199 (374)
T ss_pred HHHHHHHHHHHhhC-CHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHH
Confidence 34445555552222 232 2233355557888999999999999998763 22122222234455556 89999
Q ss_pred HHHHHHHHhHhCCCCCChhhHHHHHHhh
Q 029406 124 EAMFIYNEMRSSPATPISLPFRVILKGL 151 (194)
Q Consensus 124 ~a~~l~~~M~~~g~~p~~~ty~~ll~~~ 151 (194)
+|.+++..+....-.+++.||..+-..|
T Consensus 200 ~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 200 KALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 9999999976666677788887776554
No 261
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=72.61 E-value=32 Score=24.61 Aligned_cols=69 Identities=16% Similarity=0.158 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCC
Q 029406 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPAT 138 (194)
Q Consensus 69 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~ 138 (194)
.+...++..++...+.|.-+...++...+.+ .-+++....-.+-++|.+.|+..++.+++.+.=++|.+
T Consensus 84 ~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 84 KLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp ---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred chHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3455567777888888888888888888765 34667777888888899999999988888888777764
No 262
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.54 E-value=45 Score=27.81 Aligned_cols=107 Identities=9% Similarity=-0.060 Sum_probs=69.3
Q ss_pred hcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc---CCCCCHHhHHHHHHHHhcCCChH
Q 029406 47 RQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE---EVLFDQHTFGDIIRAFSDSGLPS 123 (194)
Q Consensus 47 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~---g~~p~~~ty~~li~~~~~~g~~~ 123 (194)
-+|...+|-..++++. ..++.|...++-.=++|.-+|+...-...+++..-. +++-....-...-.++-..|-++
T Consensus 115 ~~g~~h~a~~~wdklL--~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLL--DDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHH--HhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3566677777788886 457778888888888888888888877777777633 33333444455566666778888
Q ss_pred HHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCc
Q 029406 124 EAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 124 ~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~ 156 (194)
+|...-++-.+-+ +.|...-.++.+.+...|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r 224 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGR 224 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcch
Confidence 8777665543321 2345555555555555555
No 263
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=72.05 E-value=45 Score=25.98 Aligned_cols=58 Identities=14% Similarity=0.023 Sum_probs=38.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHH----hcC-CCCCHHhHHHHHHHHhcCCChHHHHHHHHHh
Q 029406 75 RDMLMMLARNKKVVEAKQVWEDLK----REE-VLFDQHTFGDIIRAFSDSGLPSEAMFIYNEM 132 (194)
Q Consensus 75 ~~li~~~~~~g~~~~a~~l~~~m~----~~g-~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M 132 (194)
-.|=.-|.+.|++++|.++|+.+. +.| ..+...+...+..++.+.|+.+....+--+|
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345556677777777777777665 233 5666777777777777777777766654443
No 264
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=71.85 E-value=11 Score=18.92 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=18.2
Q ss_pred HhHHHHHHHHhcCCChHHHHHHHHHhHh
Q 029406 107 HTFGDIIRAFSDSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 107 ~ty~~li~~~~~~g~~~~a~~l~~~M~~ 134 (194)
.+|..+-.+|...|++++|...|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566666777777777777777776543
No 265
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=70.13 E-value=14 Score=22.21 Aligned_cols=23 Identities=4% Similarity=-0.037 Sum_probs=13.4
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHH
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVR 62 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~ 62 (194)
.+|.+|...|++++|.+..+.+.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 45666666666666666655554
No 266
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=69.70 E-value=27 Score=28.52 Aligned_cols=71 Identities=14% Similarity=0.289 Sum_probs=51.5
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC----------CChHH
Q 029406 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS----------GLPSE 124 (194)
Q Consensus 55 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~----------g~~~~ 124 (194)
.++|.+++ +.++.|.-+.|.=+--.+.+.-.+.+++.+|+.+...... |..|+..||.. |++..
T Consensus 263 ~EL~~~L~-~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLE-EKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHH-hcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 56788888 7889998888888888888888888999999887654322 77777777653 55555
Q ss_pred HHHHHHH
Q 029406 125 AMFIYNE 131 (194)
Q Consensus 125 a~~l~~~ 131 (194)
.+++++.
T Consensus 337 nmkLLQ~ 343 (370)
T KOG4567|consen 337 NMKLLQN 343 (370)
T ss_pred HHHHHhc
Confidence 5555443
No 267
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=69.49 E-value=11 Score=28.69 Aligned_cols=67 Identities=12% Similarity=0.161 Sum_probs=48.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCC--------------CHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCC
Q 029406 75 RDMLMMLARNKKVVEAKQVWEDLKREEVLF--------------DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPI 140 (194)
Q Consensus 75 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~p--------------~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~ 140 (194)
-++|..|-+.-.+.++.++++.|-+..+.. --..-|.....+.+.|.+|.|..+++ ++.+..+
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr---eseWii~ 212 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR---ESEWIIS 212 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh---ccceeec
Confidence 457777888888888888888887644333 23567888888999999999998887 4455544
Q ss_pred hhhH
Q 029406 141 SLPF 144 (194)
Q Consensus 141 ~~ty 144 (194)
..+|
T Consensus 213 t~lW 216 (233)
T PF14669_consen 213 TPLW 216 (233)
T ss_pred CCCC
Confidence 4444
No 268
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=69.35 E-value=39 Score=24.21 Aligned_cols=70 Identities=13% Similarity=0.044 Sum_probs=51.6
Q ss_pred CHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCchh
Q 029406 105 DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180 (194)
Q Consensus 105 ~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~ 180 (194)
+..-++..+..+...|.-+.-.+++.++..+ -.|++...-.+..+|.+.|+ ..++.+++.+.-..|.++-
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~-----~r~~~ell~~ACekG~kEA 154 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGN-----TREANELLKEACEKGLKEA 154 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT------HHHHHHHHHHHHHTT-HHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcc-----hhhHHHHHHHHHHhchHHH
Confidence 3445788899999999999999999998664 36788888889999999999 8889999888888777764
No 269
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=69.02 E-value=46 Score=24.92 Aligned_cols=61 Identities=13% Similarity=0.016 Sum_probs=44.1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 100 (194)
..-..+...|++.+|.+.|+.+..+....|- ....-.+..++-+.|++++|...|+.+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445566899999999999999854333332 345566788889999999999999998754
No 270
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=68.27 E-value=41 Score=26.24 Aligned_cols=78 Identities=14% Similarity=0.076 Sum_probs=56.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHh--CCCCCChhhHHHHHHhh
Q 029406 74 YRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS--SPATPISLPFRVILKGL 151 (194)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~--~g~~p~~~ty~~ll~~~ 151 (194)
.+..|..+.+.+...+|+.....-.+.. +.|..+--.++..||-.|++++|..=++-... -...+-..+|..+|.+-
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 4556677778889999999888766653 44667778899999999999999765554322 23456667777777654
Q ss_pred C
Q 029406 152 I 152 (194)
Q Consensus 152 ~ 152 (194)
.
T Consensus 83 a 83 (273)
T COG4455 83 A 83 (273)
T ss_pred H
Confidence 3
No 271
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=67.57 E-value=17 Score=24.62 Aligned_cols=26 Identities=12% Similarity=0.234 Sum_probs=16.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHh
Q 029406 74 YRDMLMMLARNKKVVEAKQVWEDLKR 99 (194)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~l~~~m~~ 99 (194)
|..++..|-..|..++|+++|.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56666666666666666666666654
No 272
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=67.29 E-value=13 Score=25.35 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=31.3
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCC
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKK 86 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 86 (194)
.+++.+...+..-.|.++++.++ ..+...+..|..--|+.+.+.|-
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~-~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLR-KKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHH-HTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhh-hccCCcCHHHHHHHHHHHHHCCe
Confidence 56666666666777888888887 57777777777777777777664
No 273
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=67.10 E-value=25 Score=25.79 Aligned_cols=49 Identities=20% Similarity=0.082 Sum_probs=36.9
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHH
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVE 89 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 89 (194)
++|..+...+..-.|.++++.++ ..+..++..|..-.|+.+.+.|-+.+
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~-~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLR-EAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHH-hhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 56666666666778888888888 67777788888888888888876544
No 274
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=67.09 E-value=91 Score=27.58 Aligned_cols=95 Identities=20% Similarity=0.191 Sum_probs=65.4
Q ss_pred hhchhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHH
Q 029406 32 RLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGD 111 (194)
Q Consensus 32 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~ 111 (194)
.+-..+++++|+.++.+..+.....+-..|. . +..+...|..++..|..+ ..++-..+|+++.+..+. |++ +..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l-~--~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv-~~R 136 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVL-E--YGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVV-IGR 136 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHH-H--hcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHH-HHH
Confidence 3334677899999999999999999999987 3 447888999999999998 577788888888776544 333 333
Q ss_pred HHHHHhcCCChHHHHHHHHHh
Q 029406 112 IIRAFSDSGLPSEAMFIYNEM 132 (194)
Q Consensus 112 li~~~~~~g~~~~a~~l~~~M 132 (194)
-+.-+...++...+..+|...
T Consensus 137 eLa~~yEkik~sk~a~~f~Ka 157 (711)
T COG1747 137 ELADKYEKIKKSKAAEFFGKA 157 (711)
T ss_pred HHHHHHHHhchhhHHHHHHHH
Confidence 333333334444444444443
No 275
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=66.98 E-value=54 Score=24.97 Aligned_cols=78 Identities=8% Similarity=-0.017 Sum_probs=51.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHh---CCCCCChhhHHHHHHhhCC
Q 029406 77 MLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS---SPATPISLPFRVILKGLIP 153 (194)
Q Consensus 77 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~---~g~~p~~~ty~~ll~~~~~ 153 (194)
+-..+.+.|+ ++|...|-++...+.--+...--.|-.-|. ..+.+++..++....+ .+-.+|+..+..|...+-+
T Consensus 113 lYy~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~ 190 (203)
T PF11207_consen 113 LYYHWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK 190 (203)
T ss_pred HHHHhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 4445666664 567777777777765545555555554444 6677788887776643 2336778888888888887
Q ss_pred CCc
Q 029406 154 YPE 156 (194)
Q Consensus 154 ~g~ 156 (194)
.|+
T Consensus 191 ~~~ 193 (203)
T PF11207_consen 191 LKN 193 (203)
T ss_pred hcc
Confidence 777
No 276
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=66.76 E-value=14 Score=22.66 Aligned_cols=48 Identities=10% Similarity=0.198 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 69 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
|....++.++..+++-.-.++++..+.+....|.- +..+|---++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 44555566666666555566666666666555532 4444444444444
No 277
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=66.30 E-value=19 Score=24.17 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=26.3
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCH
Q 029406 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKV 87 (194)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 87 (194)
++..+...+..-.|.++++.++ +.+..++..|..-.|+.+...|-.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~-~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLR-KKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4444444455556666666666 445555666666666666665543
No 278
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=66.02 E-value=1.1e+02 Score=28.17 Aligned_cols=123 Identities=10% Similarity=-0.048 Sum_probs=86.1
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC-CHHhHHHHHHHHh
Q 029406 39 VSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF-DQHTFGDIIRAFS 117 (194)
Q Consensus 39 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~ 117 (194)
+-.-+.+.+.+..++|.....+..+ -.+.....|+..=..+...|..++|.+.|..... +.| ++....++-.++.
T Consensus 654 llaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 654 LLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHH
Confidence 3445566677888888766655542 2333455555544566677889999888876543 344 4557888999999
Q ss_pred cCCChHHHHH--HHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccc
Q 029406 118 DSGLPSEAMF--IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 118 ~~g~~~~a~~--l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~ 171 (194)
+.|+...+.. ++.++.+-+ +-+...|-.+-..+-+.|+ .+.|-+.|.-
T Consensus 730 e~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd-----~~~Aaecf~a 779 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGD-----SKQAAECFQA 779 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccc-----hHHHHHHHHH
Confidence 9999988888 888887764 3466778888888889999 6666665553
No 279
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=65.92 E-value=47 Score=29.05 Aligned_cols=87 Identities=15% Similarity=0.138 Sum_probs=62.1
Q ss_pred cCCHhH-HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHH
Q 029406 48 QDQVFL-CMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126 (194)
Q Consensus 48 ~~~~~~-a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~ 126 (194)
.|++-. ..++|+.++ .....|+.....+.| +...|.++.+.+.+...... +-....+--.+++...+.|+++.|+
T Consensus 302 ~gd~~aas~~~~~~lr-~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 302 DGDIIAASQQLFAALR-NQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred ccCHHHHHHHHHHHHH-hCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 455544 477888888 566667766555544 45678899998887755321 3345567788888888999999999
Q ss_pred HHHHHhHhCCCC
Q 029406 127 FIYNEMRSSPAT 138 (194)
Q Consensus 127 ~l~~~M~~~g~~ 138 (194)
.+-..|..+.+.
T Consensus 378 s~a~~~l~~eie 389 (831)
T PRK15180 378 STAEMMLSNEIE 389 (831)
T ss_pred HHHHHHhccccC
Confidence 998888877665
No 280
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=65.17 E-value=34 Score=21.91 Aligned_cols=54 Identities=13% Similarity=0.041 Sum_probs=38.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHH
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVW 94 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~ 94 (194)
.-+..| ..+...+|+..|....+...-.|+ -.++..++.+|+..|.+++++++-
T Consensus 12 ~GlkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 12 KGLKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445544 667788899999888733333343 347788999999999999988754
No 281
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=64.88 E-value=81 Score=26.19 Aligned_cols=148 Identities=12% Similarity=0.027 Sum_probs=81.9
Q ss_pred HHHHHHH-HHHHhcCCchhHHHHHHHHh-hhhchhhHHHHHHHHHhc--CCHhHHHHHHHHHHhhcCCCCCHHHH-HHHH
Q 029406 4 ESLMVAK-ELKRLQSHPVRFDRFIKSHV-SRLLKSDLVSVLAEFQRQ--DQVFLCMKLYDVVRKEIWYRPDMFFY-RDML 78 (194)
Q Consensus 4 ~a~~vi~-~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~m~~~~~~~p~~~~~-~~li 78 (194)
.+...++ .++.++......+..+.+-. .+++..-..++++.+-.. ...+.-.++|.....+..-+.|...- -.++
T Consensus 3 ~~~~~L~~~~~~a~~~l~~ew~~leeLy~eKLW~QLt~~l~~fvd~~~f~~~~~~l~lY~NFvsefe~kINplslvei~l 82 (380)
T KOG2908|consen 3 NAPDYLQTQLKSANPSLAAEWDRLEELYEEKLWHQLTLALVDFVDDPPFQAGDLLLQLYLNFVSEFETKINPLSLVEILL 82 (380)
T ss_pred cHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhccChHHHHHHHH
Confidence 3455566 33333333322333344433 344444334444443332 23344466666664333333443332 2334
Q ss_pred HHHHhCCCHHHHHHHHHHHHhc---CCCCCHHhHH--HHHHHHhcCCChHHHHHHHHHhHh-----CCCCCCh-hhHHHH
Q 029406 79 MMLARNKKVVEAKQVWEDLKRE---EVLFDQHTFG--DIIRAFSDSGLPSEAMFIYNEMRS-----SPATPIS-LPFRVI 147 (194)
Q Consensus 79 ~~~~~~g~~~~a~~l~~~m~~~---g~~p~~~ty~--~li~~~~~~g~~~~a~~l~~~M~~-----~g~~p~~-~ty~~l 147 (194)
...-+.++.++|+.+.+++.+. --.|+.+.|. .+.+++..-|+...+.+++++.++ -|++|+. ..|..+
T Consensus 83 ~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~l 162 (380)
T KOG2908|consen 83 VVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSL 162 (380)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHH
Confidence 4444567899999999999853 3567887765 455666667999999999988776 5788754 334444
Q ss_pred HHhh
Q 029406 148 LKGL 151 (194)
Q Consensus 148 l~~~ 151 (194)
-.-|
T Consensus 163 ssqY 166 (380)
T KOG2908|consen 163 SSQY 166 (380)
T ss_pred HHHH
Confidence 3333
No 282
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=63.80 E-value=1.1e+02 Score=27.21 Aligned_cols=116 Identities=9% Similarity=0.050 Sum_probs=71.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhc----CCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-cCCCCCHHhH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEI----WYRP---DMFFYRDMLMMLARNKKVVEAKQVWEDLKR-EEVLFDQHTF 109 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~~p---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~g~~p~~~ty 109 (194)
+.+|--.|.-.|.=..|...++.....+ -+++ +..+-+. ..+.....+....++|-++.. .+..+|...+
T Consensus 356 LmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ 433 (579)
T KOG1125|consen 356 LMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQ 433 (579)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHH
Confidence 4455555666677777777766553111 0000 1110000 222333346677777877765 4555677777
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCc
Q 029406 110 GDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 110 ~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~ 156 (194)
+.|=-.|--.|.+++|.++|+...... +-|...||=|=-.+....+
T Consensus 434 ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~ 479 (579)
T KOG1125|consen 434 SGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNR 479 (579)
T ss_pred hhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcc
Confidence 777777888999999999999987652 4468888888777766555
No 283
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=63.77 E-value=46 Score=30.20 Aligned_cols=85 Identities=14% Similarity=0.212 Sum_probs=57.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCH-----------HhH
Q 029406 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ-----------HTF 109 (194)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~-----------~ty 109 (194)
+-.-+-+.+.+..|-++|..|-. ..+++..-...+++.+|..+-+...+ +.||+ .-|
T Consensus 753 ~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrF 820 (1081)
T KOG1538|consen 753 CATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRF 820 (1081)
T ss_pred HHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhH
Confidence 33334445677778888887752 24667777788888888887765543 23333 235
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhHhCCC
Q 029406 110 GDIIRAFSDSGLPSEAMFIYNEMRSSPA 137 (194)
Q Consensus 110 ~~li~~~~~~g~~~~a~~l~~~M~~~g~ 137 (194)
.-.=.+|-++|+-.+|.++++++.++.+
T Consensus 821 eEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 821 EEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred HHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 5666788888888899998888876544
No 284
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=63.30 E-value=98 Score=26.63 Aligned_cols=56 Identities=9% Similarity=-0.021 Sum_probs=39.1
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcc
Q 029406 108 TFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFP 170 (194)
Q Consensus 108 ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~ 170 (194)
..+.+-..|...|..+++..+++.-... .||....+.|-+.+...+. .+++.+.|.
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne-----~Q~am~~y~ 495 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNE-----PQKAMEYYY 495 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhh-----HHHHHHHHH
Confidence 4567777888889999999998876543 5777777777776665555 444444443
No 285
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=62.81 E-value=1.3e+02 Score=27.71 Aligned_cols=86 Identities=7% Similarity=-0.097 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CC----------CCHHhHHHHHHHHhc
Q 029406 52 FLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE---VL----------FDQHTFGDIIRAFSD 118 (194)
Q Consensus 52 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g---~~----------p~~~ty~~li~~~~~ 118 (194)
++....+....+..|+..+......|++.. .|+...++.++++....| +. ++......|+.++.+
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~ 258 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN 258 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc
Confidence 344455555544678877877777777665 588999999998766533 11 133445566666655
Q ss_pred CCChHHHHHHHHHhHhCCCCCC
Q 029406 119 SGLPSEAMFIYNEMRSSPATPI 140 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~g~~p~ 140 (194)
++...++.++++|...|+.+.
T Consensus 259 -~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 259 -QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred -CCHHHHHHHHHHHHHhCCCHH
Confidence 889999999999999887654
No 286
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=62.60 E-value=61 Score=29.57 Aligned_cols=74 Identities=14% Similarity=0.121 Sum_probs=56.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhc--CCCCCHHhHHHHHHHHhcCCChH------HHHHHHHHhHhCCCCCChhhHHHH
Q 029406 76 DMLMMLARNKKVVEAKQVWEDLKRE--EVLFDQHTFGDIIRAFSDSGLPS------EAMFIYNEMRSSPATPISLPFRVI 147 (194)
Q Consensus 76 ~li~~~~~~g~~~~a~~l~~~m~~~--g~~p~~~ty~~li~~~~~~g~~~------~a~~l~~~M~~~g~~p~~~ty~~l 147 (194)
+|+.+|..+|++.++.+++..+... |-+-=...||..|+...+.|.++ .+.+++++-. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 8999999999999999999988854 33444557899999999999775 4455555554 44578888888
Q ss_pred HHhhC
Q 029406 148 LKGLI 152 (194)
Q Consensus 148 l~~~~ 152 (194)
+.+--
T Consensus 110 ~~~sl 114 (1117)
T COG5108 110 CQASL 114 (1117)
T ss_pred HHhhc
Confidence 76643
No 287
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=62.54 E-value=7.7 Score=34.84 Aligned_cols=108 Identities=17% Similarity=0.211 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHH---------HHHHHhcCCCCCHHhHHHHHHHHhcCCChH--HHHHHHHHhHhCCCCC
Q 029406 71 MFFYRDMLMMLARNKKVVEAKQV---------WEDLKREEVLFDQHTFGDIIRAFSDSGLPS--EAMFIYNEMRSSPATP 139 (194)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~l---------~~~m~~~g~~p~~~ty~~li~~~~~~g~~~--~a~~l~~~M~~~g~~p 139 (194)
..-+++=+..|...|.+++|.++ |+.+... ..+..-|+..=.+|.+.++.. +...=+++|+++|-.|
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 33444445555566666666542 2222222 123444566666666655443 2233345566666666
Q ss_pred ChhhHHHH----------HHhhCCCCchHHhHHHHHhhhcccccccCCchhhhhhh
Q 029406 140 ISLPFRVI----------LKGLIPYPEFREKVKDDFLELFPDMIVYDPPEDLFEDQ 185 (194)
Q Consensus 140 ~~~ty~~l----------l~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 185 (194)
+......+ .+.+-++|. ...|.++|..|..++..++.+++.
T Consensus 634 ~~iLlA~~~Ay~gKF~EAAklFk~~G~-----enRAlEmyTDlRMFD~aQE~~~~g 684 (1081)
T KOG1538|consen 634 NDLLLADVFAYQGKFHEAAKLFKRSGH-----ENRALEMYTDLRMFDYAQEFLGSG 684 (1081)
T ss_pred hHHHHHHHHHhhhhHHHHHHHHHHcCc-----hhhHHHHHHHHHHHHHHHHHhhcC
Confidence 65322221 122334555 566777777777777777776644
No 288
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.51 E-value=1.2e+02 Score=27.11 Aligned_cols=115 Identities=10% Similarity=-0.041 Sum_probs=81.5
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHH--------HHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC------C
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYD--------VVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE------V 102 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~--------~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g------~ 102 (194)
..+..+......|++..|.+++. .+. ..+..|- +...+...+.+.++-+.|.+++.+....- -
T Consensus 378 v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~-~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s 454 (652)
T KOG2376|consen 378 VLLLRAQLKISQGNPEVALEILSLFLESWKSSIL-EAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS 454 (652)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhh-hhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc
Confidence 34566777888999999999998 554 3444444 44566667777777666777776655321 1
Q ss_pred CCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCC
Q 029406 103 LFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYP 155 (194)
Q Consensus 103 ~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g 155 (194)
..-..++.-+...-.++|..++|..+++++.+. -++|..+..-++-+|++..
T Consensus 455 ~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 455 IALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARLD 506 (652)
T ss_pred hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhcC
Confidence 112345555666667789999999999999875 3678899999999998765
No 289
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=61.25 E-value=76 Score=24.68 Aligned_cols=58 Identities=9% Similarity=-0.047 Sum_probs=35.6
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDL 97 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m 97 (194)
.+-.-|.+.|.+..|..-|+.+.+...-.| .......++.+|...|..++|......+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 555666777777777777777764333222 3445556667777777777776655544
No 290
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=61.16 E-value=18 Score=20.17 Aligned_cols=22 Identities=23% Similarity=0.216 Sum_probs=11.1
Q ss_pred HHHHhcCCChHHHHHHHHHhHh
Q 029406 113 IRAFSDSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 113 i~~~~~~g~~~~a~~l~~~M~~ 134 (194)
-.+|...|+.+.|..++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3445555555555555555443
No 291
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=61.15 E-value=27 Score=24.96 Aligned_cols=48 Identities=21% Similarity=0.164 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCH
Q 029406 39 VSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKV 87 (194)
Q Consensus 39 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 87 (194)
..+|..+...++.-.|.++|+.++ ..+...+..|-..-|+.+...|-+
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~-~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELR-EEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHH-HhCCCCCHhHHHHHHHHHHHCCCE
Confidence 357777777766678888888887 566666777777777777777653
No 292
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=60.17 E-value=48 Score=23.47 Aligned_cols=45 Identities=16% Similarity=0.076 Sum_probs=38.0
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 029406 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100 (194)
Q Consensus 55 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 100 (194)
.+-++.+. ...+.|+....-.-+++|-+.+++.-|.++|+-.+..
T Consensus 69 rkglN~l~-~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 69 RKGLNNLF-DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHhhh-ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34455555 6788999999999999999999999999999988744
No 293
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=59.61 E-value=52 Score=22.21 Aligned_cols=27 Identities=11% Similarity=0.447 Sum_probs=25.5
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHh
Q 029406 108 TFGDIIRAFSDSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 108 ty~~li~~~~~~g~~~~a~~l~~~M~~ 134 (194)
-|..++..|-..|.+++|.+++.....
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 599999999999999999999999877
No 294
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=59.26 E-value=21 Score=28.91 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=35.5
Q ss_pred CCCCCHHh-HHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhH
Q 029406 101 EVLFDQHT-FGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPF 144 (194)
Q Consensus 101 g~~p~~~t-y~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty 144 (194)
.+.||+.+ |+..|..-++.|++++|+.++++.+.-|..--..||
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 35566655 679999999999999999999999999977444444
No 295
>PRK13342 recombination factor protein RarA; Reviewed
Probab=59.26 E-value=1.1e+02 Score=25.84 Aligned_cols=72 Identities=14% Similarity=0.140 Sum_probs=44.9
Q ss_pred HHHHHHHHhc---CCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCchh
Q 029406 109 FGDIIRAFSD---SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180 (194)
Q Consensus 109 y~~li~~~~~---~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~ 180 (194)
+-.+++++.+ ..+.+.|..++..|.+.|..|....-..++.++-.-|.-.......|...++-...-|.|+.
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~pe~ 304 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPEG 304 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCcHH
Confidence 4445555554 47889999999999999988887777766666555443222223334444444445666654
No 296
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=59.12 E-value=1.1e+02 Score=26.64 Aligned_cols=108 Identities=10% Similarity=0.113 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHhcCCchhHHHHHHHHhhh---hchh----hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHH
Q 029406 3 KESLMVAKELKRLQSHPVRFDRFIKSHVSR---LLKS----DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYR 75 (194)
Q Consensus 3 ~~a~~vi~~l~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~ 75 (194)
.++++.-+.|..+...-+++.+ .+.+. .... -...+|..|...|++.+|-....++- ...---...+-
T Consensus 473 ~et~~~ArsLlsar~aGeRllr---~WGgGG~g~sVed~kdkI~~LLeEY~~~GdisEA~~CikeLg--mPfFhHEvVkk 547 (645)
T KOG0403|consen 473 RETLDKARSLLSARHAGERLLR---VWGGGGGGWSVEDAKDKIDMLLEEYELSGDISEACHCIKELG--MPFFHHEVVKK 547 (645)
T ss_pred HHHHHHHHHHHHHhhcccchhh---eecCCCCcchHHHHHHHHHHHHHHHHhccchHHHHHHHHHhC--CCcchHHHHHH
Confidence 3555555666655555544443 22211 1122 23468899999999999988877773 33334577889
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC
Q 029406 76 DMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 76 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 119 (194)
+++.+.-+.|+-...+.++...-..| ..|-|.+-.+|-+-
T Consensus 548 AlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQMtkGf~RV 587 (645)
T KOG0403|consen 548 ALVMVMEKKGDSTMILDLLKECFKSG----LITTNQMTKGFERV 587 (645)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHHhhhhhhhh
Confidence 99999999999888888888777775 34666666666553
No 297
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=58.81 E-value=99 Score=26.86 Aligned_cols=45 Identities=9% Similarity=0.130 Sum_probs=25.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcC----CCCCHHhHHHHHHHHhcC
Q 029406 75 RDMLMMLARNKKVVEAKQVWEDLKREE----VLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 75 ~~li~~~~~~g~~~~a~~l~~~m~~~g----~~p~~~ty~~li~~~~~~ 119 (194)
+.....+...|++.++..++++|...= ...|..+||.++-.+++.
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH
Confidence 445556666666666666666555432 335666666655555543
No 298
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=58.80 E-value=97 Score=25.14 Aligned_cols=77 Identities=9% Similarity=0.029 Sum_probs=46.8
Q ss_pred hHHHHHHHHhhhhchhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 029406 21 RFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100 (194)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 100 (194)
.+..++....++. ...-..-.......+++..|..+|+.... .. +-+...--.+...|...|+++.|..++..+...
T Consensus 121 qlr~~ld~~~~~~-~e~~~~~~~~~~~~e~~~~a~~~~~~al~-~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 121 QLRQFLDKVLPAE-EEEALAEAKELIEAEDFGEAAPLLKQALQ-AA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred HHHHHHHHhcChH-HHHHHHHhhhhhhccchhhHHHHHHHHHH-hC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 4555555555441 11222334455677888888888888762 21 123444556777888888888888888776543
No 299
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=58.21 E-value=46 Score=28.55 Aligned_cols=113 Identities=9% Similarity=0.090 Sum_probs=60.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHH----------------hhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVR----------------KEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE 101 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~----------------~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g 101 (194)
..+++.-+-+.|..+.|+++-..-. +-.....+...|..|=+...+.|+++-|...|.+..
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--- 374 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAK--- 374 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---
Confidence 3455555555666666665433221 011222456666666666666677666666666442
Q ss_pred CCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcc
Q 029406 102 VLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFP 170 (194)
Q Consensus 102 ~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~ 170 (194)
-|..|+-.|.-.|+.+....+.+.-..+| -++.-+.++.-.|+ .+++.+++.
T Consensus 375 ------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd-----~~~cv~lL~ 426 (443)
T PF04053_consen 375 ------DFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGD-----VEECVDLLI 426 (443)
T ss_dssp -------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT------HHHHHHHHH
T ss_pred ------CccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCC-----HHHHHHHHH
Confidence 25566666666666666555555444443 24455555555566 666666665
No 300
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=57.21 E-value=55 Score=23.34 Aligned_cols=39 Identities=21% Similarity=0.176 Sum_probs=17.9
Q ss_pred hcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 029406 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVL 103 (194)
Q Consensus 64 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 103 (194)
+.|++++..= -.++..+.+.+..-.|..+++.+.+.+..
T Consensus 14 ~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~ 52 (145)
T COG0735 14 EAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPG 52 (145)
T ss_pred HcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCC
Confidence 4444443221 23444444444445555555555554433
No 301
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=57.13 E-value=51 Score=28.83 Aligned_cols=103 Identities=11% Similarity=0.002 Sum_probs=74.9
Q ss_pred HHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCH-HhHHHHHHHHhcCCCh
Q 029406 44 EFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ-HTFGDIIRAFSDSGLP 122 (194)
Q Consensus 44 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~ 122 (194)
+.+..|+++.|+..|-.-. .. -++|.+.|.-=..+|...|++++|++=-.+- ..+.|+- .-|+-.=.++.-.|++
T Consensus 11 aa~s~~d~~~ai~~~t~ai-~l-~p~nhvlySnrsaa~a~~~~~~~al~da~k~--~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAI-ML-SPTNHVLYSNRSAAYASLGSYEKALKDATKT--RRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred hhcccccHHHHHHHHHHHH-cc-CCCccchhcchHHHHHHHhhHHHHHHHHHHH--HhcCCchhhHHHHhHHHHHhcccH
Confidence 3457899999999998876 22 3348888888999999999999997644433 3345553 4688888888888999
Q ss_pred HHHHHHHHHhHhCCCCCChhhHHHHHHhh
Q 029406 123 SEAMFIYNEMRSSPATPISLPFRVILKGL 151 (194)
Q Consensus 123 ~~a~~l~~~M~~~g~~p~~~ty~~ll~~~ 151 (194)
++|..-|.+-.+. -+-+...++-+..++
T Consensus 87 ~eA~~ay~~GL~~-d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 87 EEAILAYSEGLEK-DPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHhhc-CCchHHHHHhHHHhh
Confidence 9999999886554 133456666666666
No 302
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=57.07 E-value=1.3e+02 Score=25.93 Aligned_cols=79 Identities=13% Similarity=0.080 Sum_probs=61.3
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
.+..+=+...++|+++.|.+.|.+.+ .|..|+-.|.-.|+.+...++-......| -+|..+.++
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~~----------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~ 412 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKAK----------DFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAA 412 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhc----------CccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHH
Confidence 34456667778899999999998886 36788889999999988888887777766 378888888
Q ss_pred hcCCChHHHHHHHHH
Q 029406 117 SDSGLPSEAMFIYNE 131 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~ 131 (194)
.-.|++++..+++..
T Consensus 413 ~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 413 LLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHT-HHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 889999998877765
No 303
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=55.65 E-value=49 Score=22.39 Aligned_cols=81 Identities=11% Similarity=0.028 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHH
Q 029406 86 KVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDF 165 (194)
Q Consensus 86 ~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a 165 (194)
..++|.-|-+.+...+-. ...+--.-+..+...|+++.|..+.+.+ +.||...|-+|-.. +.|. ....
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl-----~s~l 87 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGL-----GSAL 87 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhcc-----HHHH
Confidence 467787777777665532 2222223345677889999999888776 68999999888443 4555 4444
Q ss_pred hhhcccccccCCc
Q 029406 166 LELFPDMIVYDPP 178 (194)
Q Consensus 166 ~~~~~~m~~~~~~ 178 (194)
...+..|...|-|
T Consensus 88 ~~rl~rla~sg~p 100 (115)
T TIGR02508 88 ESRLNRLAASGDP 100 (115)
T ss_pred HHHHHHHHhCCCH
Confidence 4444444444443
No 304
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=55.55 E-value=44 Score=20.81 Aligned_cols=56 Identities=13% Similarity=0.006 Sum_probs=25.5
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCCCHH---hHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCCh
Q 029406 77 MLMMLARNKKVVEAKQVWEDLKREEVLFDQH---TFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPIS 141 (194)
Q Consensus 77 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~---ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~ 141 (194)
.+...+..|+.+ +++.+.+.|..++.. -++.+.. .+..|..+ +++.+.+.|..|+.
T Consensus 29 ~l~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~~----~~~~Ll~~g~~~~~ 87 (89)
T PF12796_consen 29 ALHYAAENGNLE----IVKLLLENGADINSQDKNGNTALHY-AAENGNLE----IVKLLLEHGADVNI 87 (89)
T ss_dssp HHHHHHHTTTHH----HHHHHHHTTTCTT-BSTTSSBHHHH-HHHTTHHH----HHHHHHHTTT-TTS
T ss_pred HHHHHHHcCCHH----HHHHHHHhcccccccCCCCCCHHHH-HHHcCCHH----HHHHHHHcCCCCCC
Confidence 444444556543 334444466555543 2333333 34455544 34555555655543
No 305
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=55.10 E-value=23 Score=16.86 Aligned_cols=15 Identities=20% Similarity=0.151 Sum_probs=6.5
Q ss_pred HHHhCCCHHHHHHHH
Q 029406 80 MLARNKKVVEAKQVW 94 (194)
Q Consensus 80 ~~~~~g~~~~a~~l~ 94 (194)
.+...|++++|..++
T Consensus 10 ~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 10 ALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHcCCHHHHHHHH
Confidence 344444444444443
No 306
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=54.92 E-value=1.1e+02 Score=24.51 Aligned_cols=82 Identities=16% Similarity=0.170 Sum_probs=49.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-----CCCCCHHhHHHHHH
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE-----EVLFDQHTFGDIIR 114 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----g~~p~~~ty~~li~ 114 (194)
.-|..+...|++..|+++..+.++-. . ....|+++=..- ..+++-......+... -...|...|..++.
T Consensus 132 ~~l~~ll~~~dy~~Al~li~~~~~~l--~-~l~~~~c~~~L~---~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~ 205 (291)
T PF10475_consen 132 SRLQELLEEGDYPGALDLIEECQQLL--E-ELKGYSCVRHLS---SQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQE 205 (291)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHH--H-hcccchHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 56778888999999999999987311 0 111111111111 1233333333333321 13578899999999
Q ss_pred HHhcCCChHHHHH
Q 029406 115 AFSDSGLPSEAMF 127 (194)
Q Consensus 115 ~~~~~g~~~~a~~ 127 (194)
||.-.|+...+.+
T Consensus 206 AY~lLgk~~~~~d 218 (291)
T PF10475_consen 206 AYQLLGKTQSAMD 218 (291)
T ss_pred HHHHHhhhHHHHH
Confidence 9999998766553
No 307
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=54.37 E-value=1.9e+02 Score=27.19 Aligned_cols=83 Identities=10% Similarity=0.043 Sum_probs=49.1
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-C---CCC----------CHHhHHHHHHHHhcCC
Q 029406 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE-E---VLF----------DQHTFGDIIRAFSDSG 120 (194)
Q Consensus 55 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g---~~p----------~~~ty~~li~~~~~~g 120 (194)
.+.+....+..|+..+......++..+ .|+...++.+++++... + +.. +......++.++. .+
T Consensus 185 ~~~L~~il~~EGv~id~eal~lLa~~s--gGdlR~Al~eLEKLia~~~~~~IT~e~V~allg~~~~~~I~~lidAL~-~~ 261 (824)
T PRK07764 185 RGYLERICAQEGVPVEPGVLPLVIRAG--GGSVRDSLSVLDQLLAGAGPEGVTYERAVALLGVTDSALIDEAVDALA-AG 261 (824)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHhcCCCHHHHHHHHHHHH-cC
Confidence 334444433457766666666555554 36778888877776532 1 111 2223334555554 57
Q ss_pred ChHHHHHHHHHhHhCCCCCC
Q 029406 121 LPSEAMFIYNEMRSSPATPI 140 (194)
Q Consensus 121 ~~~~a~~l~~~M~~~g~~p~ 140 (194)
+...++.+++.+.+.|..|.
T Consensus 262 D~a~al~~l~~Li~~G~dp~ 281 (824)
T PRK07764 262 DGAALFGTVDRVIEAGHDPR 281 (824)
T ss_pred CHHHHHHHHHHHHHcCCCHH
Confidence 78888888888888877643
No 308
>PF13934 ELYS: Nuclear pore complex assembly
Probab=54.21 E-value=99 Score=23.82 Aligned_cols=108 Identities=13% Similarity=0.046 Sum_probs=63.2
Q ss_pred hchhhHHHHHHHHHh--cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHH
Q 029406 33 LLKSDLVSVLAEFQR--QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFG 110 (194)
Q Consensus 33 ~~~~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~ 110 (194)
..+..+...+.+|-- +++++.|.+.+-+ ..+.|+-.. -+|.++.+.|+.+-|+.++....-..- +...-.
T Consensus 74 ~ip~~~~~~~~g~W~LD~~~~~~A~~~L~~----ps~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~~ 145 (226)
T PF13934_consen 74 GIPPKYIKFIQGFWLLDHGDFEEALELLSH----PSLIPWFPD--KILQALLRRGDPKLALRYLRAVGPPLS--SPEALT 145 (226)
T ss_pred CCCHHHHHHHHHHHHhChHhHHHHHHHhCC----CCCCcccHH--HHHHHHHHCCChhHHHHHHHhcCCCCC--CHHHHH
Confidence 446677788888765 5666677666522 233333332 477778888888988888886532211 222233
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhC
Q 029406 111 DIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152 (194)
Q Consensus 111 ~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~ 152 (194)
.++.. ..++.+.+|+.+-+...+.. ....+..++..+.
T Consensus 146 ~~~~~-La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 146 LYFVA-LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred HHHHH-HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 33444 56688888888777655421 1344444554444
No 309
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=54.17 E-value=2e+02 Score=27.69 Aligned_cols=84 Identities=11% Similarity=0.022 Sum_probs=54.8
Q ss_pred HHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH--HhcCCCh
Q 029406 45 FQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA--FSDSGLP 122 (194)
Q Consensus 45 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~--~~~~g~~ 122 (194)
+.+.++..+|+.-|+.-. +--+-|...|-.+..+|.+.|++.-|+++|.+...- .|+. +|.....+ -|..|.+
T Consensus 572 yLea~n~h~aV~~fQsAL--R~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSAL--RTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKY 646 (1238)
T ss_pred ccCccchhhHHHHHHHHh--cCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhH
Confidence 345667777777777664 222336778888999999999999999999876433 4432 33333222 3456788
Q ss_pred HHHHHHHHHhH
Q 029406 123 SEAMFIYNEMR 133 (194)
Q Consensus 123 ~~a~~l~~~M~ 133 (194)
.++.+.+....
T Consensus 647 keald~l~~ii 657 (1238)
T KOG1127|consen 647 KEALDALGLII 657 (1238)
T ss_pred HHHHHHHHHHH
Confidence 88877777653
No 310
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=53.98 E-value=85 Score=22.96 Aligned_cols=62 Identities=11% Similarity=0.084 Sum_probs=45.5
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHH
Q 029406 61 VRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSE 124 (194)
Q Consensus 61 m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 124 (194)
++ ..|++++..=. .++..+......-.|.+|++.+.+.+..++..|---.|..+.+.|-+..
T Consensus 17 L~-~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CA-QRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HH-HcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 44 67777665544 5555555566677899999999999877888887777888888887654
No 311
>PF06576 DUF1133: Protein of unknown function (DUF1133); InterPro: IPR010557 This family consists of a number of hypothetical proteins from Escherichia coli O157:H7 and Salmonella typhi. The function of this family is unknown.
Probab=53.93 E-value=88 Score=23.13 Aligned_cols=28 Identities=11% Similarity=0.296 Sum_probs=14.4
Q ss_pred chHHH-HHHHHHHHhcCCchhHHHHHHHH
Q 029406 2 SKESL-MVAKELKRLQSHPVRFDRFIKSH 29 (194)
Q Consensus 2 ~~~a~-~vi~~l~~~~~~~~~~~~~~~~~ 29 (194)
+|.|+ ++++.|++..-...++..++++.
T Consensus 56 tKtaI~~aLr~mkKsGi~k~EL~~~~~ei 84 (176)
T PF06576_consen 56 TKTAINEALRRMKKSGISKPELEAFLREI 84 (176)
T ss_pred cHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 45555 55555555555544444444444
No 312
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.30 E-value=1.7e+02 Score=26.37 Aligned_cols=83 Identities=11% Similarity=0.003 Sum_probs=54.8
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---C----------CCHHhHHHHHHHHhcCCC
Q 029406 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEV---L----------FDQHTFGDIIRAFSDSGL 121 (194)
Q Consensus 55 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~---~----------p~~~ty~~li~~~~~~g~ 121 (194)
.+.+....+..|+..+......++.. ..|+...++.++++....|- . ++......++.++.. |+
T Consensus 189 ~~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~-~d 265 (618)
T PRK14951 189 LEHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ-GD 265 (618)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc-CC
Confidence 33444333356777777777776663 35889999988877654431 1 234445556666555 78
Q ss_pred hHHHHHHHHHhHhCCCCCC
Q 029406 122 PSEAMFIYNEMRSSPATPI 140 (194)
Q Consensus 122 ~~~a~~l~~~M~~~g~~p~ 140 (194)
...++.++++|...|..|.
T Consensus 266 ~~~al~~l~~l~~~G~~~~ 284 (618)
T PRK14951 266 GRTVVETADELRLNGLSAA 284 (618)
T ss_pred HHHHHHHHHHHHHcCCCHH
Confidence 8999999999988887754
No 313
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=52.88 E-value=1.8e+02 Score=26.39 Aligned_cols=96 Identities=14% Similarity=0.022 Sum_probs=61.9
Q ss_pred CCCHHHH--HHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHH-hHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhH
Q 029406 68 RPDMFFY--RDMLMMLARNKKVVEAKQVWEDLKREEVLFDQH-TFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPF 144 (194)
Q Consensus 68 ~p~~~~~--~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~-ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty 144 (194)
+|.+..| ..+...|=+.|+++.|+...+....+ .|+.+ -|-+=-+.+..+|+++.|..++++.++-. .||...-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~IN 442 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAIN 442 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHH
Confidence 5665544 55788888999999999999977655 55543 35555588899999999999999876552 3443322
Q ss_pred HHHHHhhCCCCchHHhHHHHHhhhccc
Q 029406 145 RVILKGLIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 145 ~~ll~~~~~~g~~~~~~~~~a~~~~~~ 171 (194)
+-=.+-..+... .++|.++...
T Consensus 443 sKcAKYmLrAn~-----i~eA~~~~sk 464 (700)
T KOG1156|consen 443 SKCAKYMLRANE-----IEEAEEVLSK 464 (700)
T ss_pred HHHHHHHHHccc-----cHHHHHHHHH
Confidence 222222223334 5666665443
No 314
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=52.72 E-value=86 Score=22.67 Aligned_cols=118 Identities=17% Similarity=0.195 Sum_probs=63.6
Q ss_pred HHHHHHHhcCCchhHHHHHHHHhhhhchhhHHHHHHHHHh--cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh--
Q 029406 8 VAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQR--QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLAR-- 83 (194)
Q Consensus 8 vi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-- 83 (194)
.+..|+.+...+..+.+.+.........+.+-..+..+.. .+++..-.++|+ ..|..|+..++..+-.....
T Consensus 6 ~~~~L~d~y~aE~q~~~~l~~~~~~a~~~~L~~~l~~h~~eT~~q~~rLe~~~~----~lg~~p~~~~c~~~~gl~~e~~ 81 (159)
T PF05974_consen 6 FIDELRDLYSAEKQLLKALPKLAEAASSPELKAALEEHLEETEQQIERLEQIFE----ALGADPSAEKCDAMEGLVAEAQ 81 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-SSHHHHHHHHHHHHHHHHHHHHHHHHHH----HTTS-S-CHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HccCCCccCcchHHHHHHHHHH
Confidence 5677888888888888888888877777788777777655 344455555554 45677876664433222211
Q ss_pred --------CCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHh
Q 029406 84 --------NKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEM 132 (194)
Q Consensus 84 --------~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M 132 (194)
.+.+.++.-+.....-.. --...|.+++..-...|.. ++.++++..
T Consensus 82 ~~~~~~~~d~~~~D~~li~a~q~~eh--yeIA~Y~tL~~~A~~lG~~-e~a~lL~~~ 135 (159)
T PF05974_consen 82 ELIEEFAEDPAVKDAALIAAAQKVEH--YEIAAYGTLIALAKQLGDE-EAAQLLEQN 135 (159)
T ss_dssp HHHHT-S-SHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCT-H-HHHHHHHHH
T ss_pred HHHhcccCCchHhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHcCCH-HHHHHHHHH
Confidence 111122221111111110 1344688888888888876 444555544
No 315
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.57 E-value=1.5e+02 Score=26.73 Aligned_cols=80 Identities=10% Similarity=0.121 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHh
Q 029406 71 MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG 150 (194)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~ 150 (194)
..-|..|=++....+++..|.+.|... .-|..|+-.+...|+.+....+-..-++.| -.|.-..+
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a---------~d~~~LlLl~t~~g~~~~l~~la~~~~~~g------~~N~AF~~ 730 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRA---------RDLGSLLLLYTSSGNAEGLAVLASLAKKQG------KNNLAFLA 730 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhh---------cchhhhhhhhhhcCChhHHHHHHHHHHhhc------ccchHHHH
Confidence 334555555555555555555554432 124444444444554444333333333333 12333334
Q ss_pred hCCCCchHHhHHHHHhhhcc
Q 029406 151 LIPYPEFREKVKDDFLELFP 170 (194)
Q Consensus 151 ~~~~g~~~~~~~~~a~~~~~ 170 (194)
|...|+ .+.|.+++.
T Consensus 731 ~~l~g~-----~~~C~~lLi 745 (794)
T KOG0276|consen 731 YFLSGD-----YEECLELLI 745 (794)
T ss_pred HHHcCC-----HHHHHHHHH
Confidence 555666 666666655
No 316
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=52.41 E-value=1e+02 Score=23.48 Aligned_cols=79 Identities=5% Similarity=-0.028 Sum_probs=57.3
Q ss_pred HhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh---cCCCCCHHhHHHHHHHHhcCCCh
Q 029406 46 QRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR---EEVLFDQHTFGDIIRAFSDSGLP 122 (194)
Q Consensus 46 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~g~~p~~~ty~~li~~~~~~g~~ 122 (194)
.+.|+ ..|...|-.+. ..+..-+...-..|=..| -..+.+++.+++....+ .+-.+|...+.+|.+.|-+.|++
T Consensus 118 sr~~d-~~A~~~fL~~E-~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLE-GTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hccCc-HHHHHHHHHHc-CCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 34443 56788888886 344444555555555555 47789999999987775 33478999999999999999999
Q ss_pred HHHHH
Q 029406 123 SEAMF 127 (194)
Q Consensus 123 ~~a~~ 127 (194)
+.|+-
T Consensus 195 e~AYi 199 (203)
T PF11207_consen 195 EQAYI 199 (203)
T ss_pred hhhhh
Confidence 98864
No 317
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=51.72 E-value=29 Score=16.88 Aligned_cols=22 Identities=0% Similarity=0.028 Sum_probs=13.6
Q ss_pred HHHHHHhcCCHhHHHHHHHHHH
Q 029406 41 VLAEFQRQDQVFLCMKLYDVVR 62 (194)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~ 62 (194)
+-.++.+.|++++|.+.|+.+.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHH
Confidence 3344555667777777776665
No 318
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=51.57 E-value=1.7e+02 Score=26.99 Aligned_cols=95 Identities=13% Similarity=0.087 Sum_probs=69.5
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC-C
Q 029406 58 YDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS-P 136 (194)
Q Consensus 58 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~-g 136 (194)
+.+++ ...+.=|...|..+--+..+.|+++.+-+.|++.....+. ....|..+-..|+..|.-..|..+++.-... .
T Consensus 311 ~~k~r-~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~ 388 (799)
T KOG4162|consen 311 LRKLR-LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSE 388 (799)
T ss_pred HHHHH-HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhccccc
Confidence 34444 3445568889999999999999999999999988655444 6677999999999999999999998874333 3
Q ss_pred CCCChhhHHHHHHhhCCC
Q 029406 137 ATPISLPFRVILKGLIPY 154 (194)
Q Consensus 137 ~~p~~~ty~~ll~~~~~~ 154 (194)
-++|...+-..-..|.+.
T Consensus 389 ~ps~~s~~Lmasklc~e~ 406 (799)
T KOG4162|consen 389 QPSDISVLLMASKLCIER 406 (799)
T ss_pred CCCcchHHHHHHHHHHhc
Confidence 344555555555556644
No 319
>COG4865 Glutamate mutase epsilon subunit [Amino acid transport and metabolism]
Probab=50.74 E-value=1.2e+02 Score=25.21 Aligned_cols=65 Identities=12% Similarity=0.093 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHhCC-----------CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCC
Q 029406 69 PDMFFYRDMLMMLARNK-----------KVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSP 136 (194)
Q Consensus 69 p~~~~~~~li~~~~~~g-----------~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g 136 (194)
|+..-|...|.--.+-| ..++-.++++.+.+.| -.....+.|..|-+.+.+++|-..+..-++.+
T Consensus 43 P~HKrF~~~lE~a~~~~k~l~Qpragv~lLdehielL~tl~eeG---qADlLp~tIDSyTR~N~Ye~AavgL~~Sie~~ 118 (485)
T COG4865 43 PEHKRFSLALEKADKEGKTLSQPRAGVALLDEHIELLKTLQEEG---QADLLPSTIDSYTRLNRYEEAAVGLKKSIEAG 118 (485)
T ss_pred CchhhHHHHHHhhhhcCceecccccCcchHHHHHHHHHHHHHhc---cccccchhhhhhhhhhhHHHHHHHHHHhhhcC
Confidence 67777777776555533 3677788888888777 23345678999999999999999888866554
No 320
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=50.66 E-value=71 Score=21.13 Aligned_cols=65 Identities=12% Similarity=0.099 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHhcCCC
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKK--VVEAKQVWEDLKREEVL 103 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~l~~~m~~~g~~ 103 (194)
+....+|..|...+++++|..-+.++. ... --......+|..+...+. -+-+..++..+...+..
T Consensus 3 k~i~~~l~ey~~~~d~~ea~~~l~el~-~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 3 KKIFSILMEYFSSGDVDEAVECLKELK-LPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHTT--GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhC-CCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 345678888888899999988888874 221 112233444444444422 23334555666555543
No 321
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=50.50 E-value=79 Score=21.62 Aligned_cols=81 Identities=15% Similarity=-0.038 Sum_probs=50.1
Q ss_pred cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHH
Q 029406 48 QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127 (194)
Q Consensus 48 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 127 (194)
.....+|..+.+++. +.+. .....--+-+..+.+.|++++|+ ......-.||...|-+|-.+ +.|..+++..
T Consensus 19 ~HcH~EA~tIa~wL~-~~~~-~~E~v~lIr~~sLmNrG~Yq~AL----l~~~~~~~pdL~p~~AL~a~--klGL~~~~e~ 90 (116)
T PF09477_consen 19 HHCHQEANTIADWLE-QEGE-MEEVVALIRLSSLMNRGDYQEAL----LLPQCHCYPDLEPWAALCAW--KLGLASALES 90 (116)
T ss_dssp TT-HHHHHHHHHHHH-HTTT-THHHHHHHHHHHHHHTT-HHHHH----HHHTTS--GGGHHHHHHHHH--HCT-HHHHHH
T ss_pred hHHHHHHHHHHHHHH-hCCc-HHHHHHHHHHHHHHhhHHHHHHH----HhcccCCCccHHHHHHHHHH--hhccHHHHHH
Confidence 455688999999997 4443 22222223334556789999992 12233456888888777655 8899999999
Q ss_pred HHHHhHhCC
Q 029406 128 IYNEMRSSP 136 (194)
Q Consensus 128 l~~~M~~~g 136 (194)
.+..+..+|
T Consensus 91 ~l~rla~~g 99 (116)
T PF09477_consen 91 RLTRLASSG 99 (116)
T ss_dssp HHHHHCT-S
T ss_pred HHHHHHhCC
Confidence 999887776
No 322
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=50.35 E-value=1.2e+02 Score=23.59 Aligned_cols=61 Identities=11% Similarity=0.007 Sum_probs=46.2
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhH----hCCCC-CChhhHHHHHHhhCCCCchHHhHHHHHhhhc
Q 029406 108 TFGDIIRAFSDSGLPSEAMFIYNEMR----SSPAT-PISLPFRVILKGLIPYPEFREKVKDDFLELF 169 (194)
Q Consensus 108 ty~~li~~~~~~g~~~~a~~l~~~M~----~~g~~-p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~ 169 (194)
.--.+-.-|.+.|++++|..+|+.+. +.|+. +...+...+..++...|+ .+..+..+.++.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~-~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD-VEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHh
Confidence 34456677899999999999999873 45765 677888888899999999 555555555554
No 323
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=50.18 E-value=18 Score=18.62 Aligned_cols=21 Identities=14% Similarity=0.365 Sum_probs=10.7
Q ss_pred CHHhHHHHHHHHhcCCChHHH
Q 029406 105 DQHTFGDIIRAFSDSGLPSEA 125 (194)
Q Consensus 105 ~~~ty~~li~~~~~~g~~~~a 125 (194)
|...|+.+-..|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 444555555555555555544
No 324
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=49.75 E-value=64 Score=23.74 Aligned_cols=83 Identities=12% Similarity=0.016 Sum_probs=56.6
Q ss_pred CHhHHHHHHHHHHhhcC---CCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHh-cCCCCCHHhHHHHHHHHhcCCCh
Q 029406 50 QVFLCMKLYDVVRKEIW---YRPDM---FFYRDMLMMLARNKKVVEAKQVWEDLKR-EEVLFDQHTFGDIIRAFSDSGLP 122 (194)
Q Consensus 50 ~~~~a~~~~~~m~~~~~---~~p~~---~~~~~li~~~~~~g~~~~a~~l~~~m~~-~g~~p~~~ty~~li~~~~~~g~~ 122 (194)
+-.+|..+|..+.+... +.++. ..+..++..+.+..+ -+++..+.. .|+.|...++.-++..+++.-..
T Consensus 108 ~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~----p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~ 183 (199)
T smart00164 108 DEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEYD----PDLYKHLKDKLGIDPSLYALRWFLTLFARELPL 183 (199)
T ss_pred CHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHC----HHHHHHHHHhcCCCchhHHHHHHHHHHHhhCCH
Confidence 45667777777753222 34443 223333333333332 356677775 89999999999999999998899
Q ss_pred HHHHHHHHHhHhCC
Q 029406 123 SEAMFIYNEMRSSP 136 (194)
Q Consensus 123 ~~a~~l~~~M~~~g 136 (194)
+.+..+++.+...|
T Consensus 184 ~~~~riwD~~l~eG 197 (199)
T smart00164 184 EIVLRIWDVLFAEG 197 (199)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999987776
No 325
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.73 E-value=1.8e+02 Score=25.50 Aligned_cols=84 Identities=12% Similarity=-0.025 Sum_probs=56.3
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CC----------CCHHhHHHHHHHHhcCCC
Q 029406 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE---VL----------FDQHTFGDIIRAFSDSGL 121 (194)
Q Consensus 55 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g---~~----------p~~~ty~~li~~~~~~g~ 121 (194)
...+....+..|+..+......++... .|+...|+.++++....| +. ++....-.++.++.. |+
T Consensus 184 ~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~-~d 260 (509)
T PRK14958 184 AAHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALAA-KA 260 (509)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc-CC
Confidence 334444433567777776666666554 588999999888766543 11 233344555565544 88
Q ss_pred hHHHHHHHHHhHhCCCCCCh
Q 029406 122 PSEAMFIYNEMRSSPATPIS 141 (194)
Q Consensus 122 ~~~a~~l~~~M~~~g~~p~~ 141 (194)
.+.++.++++|...|..|..
T Consensus 261 ~~~~l~~~~~l~~~g~~~~~ 280 (509)
T PRK14958 261 GDRLLGCVTRLVEQGVDFSN 280 (509)
T ss_pred HHHHHHHHHHHHHcCCCHHH
Confidence 99999999999999988753
No 326
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=49.22 E-value=2.3e+02 Score=26.55 Aligned_cols=86 Identities=13% Similarity=0.019 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---C----------CCCHHhHHHHHHHHhc
Q 029406 52 FLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE---V----------LFDQHTFGDIIRAFSD 118 (194)
Q Consensus 52 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g---~----------~p~~~ty~~li~~~~~ 118 (194)
++..+.++...+..|+.-+......+.+.+ .|+..+|+.++++....+ + .+|...+..++..+..
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~~A--~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~~ 258 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLARAA--QGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALAA 258 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHHc
Confidence 344555565544556666666555555443 678888888877655332 1 1244445566665444
Q ss_pred CCChHHHHHHHHHhHhCCCCCC
Q 029406 119 SGLPSEAMFIYNEMRSSPATPI 140 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~g~~p~ 140 (194)
++...++.+++++...|+.+.
T Consensus 259 -~d~~~~l~~~~~l~~~g~~~~ 279 (830)
T PRK07003 259 -GDGPEILAVADEMALRSLSFS 279 (830)
T ss_pred -CCHHHHHHHHHHHHHhCCCHH
Confidence 888899999999888876543
No 327
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=48.73 E-value=1.5e+02 Score=24.28 Aligned_cols=57 Identities=12% Similarity=0.087 Sum_probs=31.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHh
Q 029406 75 RDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEM 132 (194)
Q Consensus 75 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M 132 (194)
+..=+.|..+|.+.+|.++.+....-. +.+...|-.++..|+..|+--.+..-++.|
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 444455556666666666665554332 345555666666666666655444444443
No 328
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=48.63 E-value=46 Score=22.26 Aligned_cols=49 Identities=18% Similarity=0.326 Sum_probs=36.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHH
Q 029406 76 DMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSE 124 (194)
Q Consensus 76 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 124 (194)
.++..+...+..-.|.++++.+.+.+..++..|--..|+.+...|-+.+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 3566666666667788888888888777777777777778888776654
No 329
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.18 E-value=1.5e+02 Score=24.04 Aligned_cols=123 Identities=11% Similarity=0.052 Sum_probs=82.9
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCC
Q 029406 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120 (194)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g 120 (194)
+|..+-.....+..+.+|+.-. ....+++++..--.|.+.-....+.+..+..-+.+.+..+.|.+.-...|
T Consensus 155 ii~~~e~~~~~ESsv~lW~KRl--------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~G 226 (366)
T KOG2796|consen 155 ILANLEQGLAEESSIRLWRKRL--------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIG 226 (366)
T ss_pred HHHHHHhccchhhHHHHHHHHH--------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcc
Confidence 3333333334455566666554 24556777777777888888889999988776778888999999999999
Q ss_pred ChHHHHHHHHHhHhCCCCCChhhHHHHHHh-----hCCCCchHHhHHHHHhhhcccccccC
Q 029406 121 LPSEAMFIYNEMRSSPATPISLPFRVILKG-----LIPYPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 121 ~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~-----~~~~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
+.+.|...|++..+..-..|..+++.++.. |.-..+ ...+...+.+....+
T Consensus 227 D~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn-----~a~a~r~~~~i~~~D 282 (366)
T KOG2796|consen 227 DIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNN-----FAEAHRFFTEILRMD 282 (366)
T ss_pred cHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccc-----hHHHHHHHhhccccC
Confidence 999999999988665445666666666532 333334 555555565544433
No 330
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=48.18 E-value=19 Score=30.71 Aligned_cols=48 Identities=6% Similarity=-0.058 Sum_probs=22.1
Q ss_pred HHhCCCHHHHHHHHHHHHhcCCC---CCHHhHHHHHHHHhcCCChHHHHHH
Q 029406 81 LARNKKVVEAKQVWEDLKREEVL---FDQHTFGDIIRAFSDSGLPSEAMFI 128 (194)
Q Consensus 81 ~~~~g~~~~a~~l~~~m~~~g~~---p~~~ty~~li~~~~~~g~~~~a~~l 128 (194)
+|+.|+.+.+..+|....+-|.. .=...|+.|=++|.-.+++++|++.
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~y 77 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKY 77 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhh
Confidence 34555555555555555554422 1122344444444444555555543
No 331
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=47.50 E-value=1.9e+02 Score=25.03 Aligned_cols=81 Identities=7% Similarity=0.012 Sum_probs=47.8
Q ss_pred cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHH----hHHHHHHHHhcCCChH
Q 029406 48 QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQH----TFGDIIRAFSDSGLPS 123 (194)
Q Consensus 48 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~----ty~~li~~~~~~g~~~ 123 (194)
.++-..|.+.+-...+..-++-|+...+++=+.+...|+.++|...|++.... .|+.. .|..|+ ...|+.+
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL---~~eg~~e 283 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLL---GQEGGCE 283 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHH---HhccCHh
Confidence 34444444444444323456667888888888888888888888888876543 34332 244443 3455555
Q ss_pred HHHHHHHHhH
Q 029406 124 EAMFIYNEMR 133 (194)
Q Consensus 124 ~a~~l~~~M~ 133 (194)
+...+.+.+-
T Consensus 284 ~~~~L~~~Lf 293 (564)
T KOG1174|consen 284 QDSALMDYLF 293 (564)
T ss_pred hHHHHHHHHH
Confidence 5555555543
No 332
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=47.31 E-value=1.2e+02 Score=26.79 Aligned_cols=94 Identities=13% Similarity=0.084 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHH---HHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFY---RDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~---~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
...++..|.+.+++++|..++..|. ..-- ...+| +.+.+.+.+.....+....++...-.=..|....-.+++.
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smn--W~~~-g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ 487 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMN--WNTM-GEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVL 487 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC--cccc-HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHH
Confidence 3456666777777777777777663 2221 22233 3333444444434444444444433223333333333333
Q ss_pred HHhcCCChHHHHHHHHHhHhC
Q 029406 115 AFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~ 135 (194)
-|.. -=.+-|.++|+.|...
T Consensus 488 ey~d-~V~~~aRRfFhhLLR~ 507 (545)
T PF11768_consen 488 EYRD-PVSDLARRFFHHLLRY 507 (545)
T ss_pred HHHH-HHHHHHHHHHHHHHHh
Confidence 3333 2334455555555443
No 333
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=46.93 E-value=1.4e+02 Score=23.57 Aligned_cols=153 Identities=12% Similarity=0.078 Sum_probs=97.4
Q ss_pred hhhhchhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhC-------CCH---HHHHHHHHHHH-
Q 029406 30 VSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARN-------KKV---VEAKQVWEDLK- 98 (194)
Q Consensus 30 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-------g~~---~~a~~l~~~m~- 98 (194)
.++.++..++.++-++-+.+++++|+...+......+-.||. .|..-|.+.+.. .+. .+|..=|..+.
T Consensus 66 ~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ 144 (254)
T COG4105 66 FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQ 144 (254)
T ss_pred CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHH
Confidence 577888899999999999999999999999997666666664 344444444432 222 33333333333
Q ss_pred ---hcCCCCCHHhH------------HHHHHHHhcCCChHHHHHHHHHhHhCCCCCChh---hHHHHHHhhCCCCchHHh
Q 029406 99 ---REEVLFDQHTF------------GDIIRAFSDSGLPSEAMFIYNEMRSSPATPISL---PFRVILKGLIPYPEFREK 160 (194)
Q Consensus 99 ---~~g~~p~~~ty------------~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~---ty~~ll~~~~~~g~~~~~ 160 (194)
.....||+..= -.+-+-|.+.|.+-.|..=++.|.++ .+-... ..-.+..+|-..|.
T Consensus 145 ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl---- 219 (254)
T COG4105 145 RYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGL---- 219 (254)
T ss_pred HCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCC----
Confidence 34456665431 23456788999999999999999888 443333 44445567777777
Q ss_pred HHHHHhhhcccccccCCchhhhhhhhhhhh
Q 029406 161 VKDDFLELFPDMIVYDPPEDLFEDQEWRRE 190 (194)
Q Consensus 161 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~ 190 (194)
.++|...-.- ...+.|+..+-..+++.+
T Consensus 220 -~~~a~~~~~v-l~~N~p~s~~~~~~~~~~ 247 (254)
T COG4105 220 -TDEAKKTAKV-LGANYPDSQWYKDAYRLL 247 (254)
T ss_pred -hHHHHHHHHH-HHhcCCCCcchhhhhhcc
Confidence 5555444332 234555555555555543
No 334
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=46.66 E-value=22 Score=21.61 Aligned_cols=24 Identities=13% Similarity=0.062 Sum_probs=18.5
Q ss_pred cCCHhHHHHHHHHHHhhcCCCCCH
Q 029406 48 QDQVFLCMKLYDVVRKEIWYRPDM 71 (194)
Q Consensus 48 ~~~~~~a~~~~~~m~~~~~~~p~~ 71 (194)
+=+++.|...|..++++..++|+.
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhh
Confidence 348899999999998555666654
No 335
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=46.58 E-value=1.8e+02 Score=24.62 Aligned_cols=95 Identities=8% Similarity=-0.027 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHH-HHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFG-DIIR 114 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~-~li~ 114 (194)
..++.+.-++.+.+++..|++.-+... .. -++|.....-==.+|...|.++.|...|.++.+. .|+...-. -|+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvL-e~-~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVL-EL-DPNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIK 333 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHH-hc-CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence 445678888999999999999988886 22 2345555555556778889999999999999765 56555444 4444
Q ss_pred HHhcCCChH-HHHHHHHHhHh
Q 029406 115 AFSDSGLPS-EAMFIYNEMRS 134 (194)
Q Consensus 115 ~~~~~g~~~-~a~~l~~~M~~ 134 (194)
+--+...+. +...+|..|-.
T Consensus 334 l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 444444443 33557887743
No 336
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=46.32 E-value=1.2e+02 Score=24.76 Aligned_cols=88 Identities=15% Similarity=0.240 Sum_probs=61.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-CCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHH
Q 029406 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVL-FDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFR 145 (194)
Q Consensus 67 ~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~ 145 (194)
+..+...+..++..| +.+-+.++...|..=++.-+. .-..+++..-..|..+|.+.+|..+.+....- -+.+...|.
T Consensus 240 inltide~kelv~~y-kgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltl-dpL~e~~nk 317 (361)
T COG3947 240 INLTIDELKELVGQY-KGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTL-DPLSEQDNK 317 (361)
T ss_pred cccCHHHHHHHHHHh-cCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc-ChhhhHHHH
Confidence 346677788888888 444444444444322221111 12236778889999999999999999887665 367888999
Q ss_pred HHHHhhCCCCc
Q 029406 146 VILKGLIPYPE 156 (194)
Q Consensus 146 ~ll~~~~~~g~ 156 (194)
.|++.+...|+
T Consensus 318 ~lm~~la~~gD 328 (361)
T COG3947 318 GLMASLATLGD 328 (361)
T ss_pred HHHHHHHHhcc
Confidence 99999999998
No 337
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=46.31 E-value=54 Score=29.00 Aligned_cols=64 Identities=14% Similarity=0.066 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHh
Q 029406 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 69 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~ 134 (194)
.+...-.-++..|.+.|..+.|..+...+-..-+ ...-|...+..+.++|+...+-.+-+.+.+
T Consensus 403 ~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 403 DTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp -SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-----------------
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4566678899999999999999999988865533 345799999999999999887776666653
No 338
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=46.21 E-value=37 Score=16.61 Aligned_cols=26 Identities=15% Similarity=0.137 Sum_probs=15.0
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhH
Q 029406 108 TFGDIIRAFSDSGLPSEAMFIYNEMR 133 (194)
Q Consensus 108 ty~~li~~~~~~g~~~~a~~l~~~M~ 133 (194)
.|..+=..|.+.|++++|...|++..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34445556666666666666666643
No 339
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=45.73 E-value=1.2e+02 Score=22.23 Aligned_cols=55 Identities=13% Similarity=0.119 Sum_probs=40.7
Q ss_pred HHHHhCCCHHHHHHHHHHHHhcC-CCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 79 MMLARNKKVVEAKQVWEDLKREE-VLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 79 ~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
..-.+.++.+++..++..+.-.. -.|...+|...+. ...|++.+|..+|+.+.+.
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~--i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLH--IVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHH--HHhCCHHHHHHHHHHHhcc
Confidence 33445789999999999987432 3335556666654 5899999999999998665
No 340
>PRK09462 fur ferric uptake regulator; Provisional
Probab=45.49 E-value=64 Score=22.89 Aligned_cols=48 Identities=13% Similarity=0.096 Sum_probs=34.4
Q ss_pred HHHHHHHhc-CCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHH
Q 029406 40 SVLAEFQRQ-DQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVV 88 (194)
Q Consensus 40 ~ll~~~~~~-~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 88 (194)
.++..+... +..-.|.++++.++ ..+...+..|..-.|+.+...|-+.
T Consensus 21 ~Il~~l~~~~~~h~sa~eI~~~l~-~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 21 KILEVLQEPDNHHVSAEDLYKRLI-DMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHH-hhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 556666654 45678888888887 5666777788777888888877653
No 341
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=45.23 E-value=99 Score=25.41 Aligned_cols=58 Identities=17% Similarity=0.275 Sum_probs=47.1
Q ss_pred HHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCC
Q 029406 91 KQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIP 153 (194)
Q Consensus 91 ~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~ 153 (194)
.++|+.|++.++.|.-..|-=+.-.++..=.+.++..+|+.+.+.... |..|+..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHH
Confidence 468999999999999998888888888888889999999998655333 7778877773
No 342
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=45.19 E-value=1e+02 Score=21.32 Aligned_cols=43 Identities=12% Similarity=0.090 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCCC-CCHHhHHHHHHHHhcCCChHHHHHHHHH
Q 029406 89 EAKQVWEDLKREEVL-FDQHTFGDIIRAFSDSGLPSEAMFIYNE 131 (194)
Q Consensus 89 ~a~~l~~~m~~~g~~-p~~~ty~~li~~~~~~g~~~~a~~l~~~ 131 (194)
++..+|..|...|+- --+.-|...-..+-..|++.+|..+|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 677777777766633 2445566666666777777777777654
No 343
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=45.12 E-value=1.1e+02 Score=25.00 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHH
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFY 74 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~ 74 (194)
.+++.|.++|.+++|.++....+.-..--|+....
T Consensus 111 ~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv 145 (338)
T PF04124_consen 111 QLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLV 145 (338)
T ss_pred HHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhH
Confidence 68999999999999999988886333333554433
No 344
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=44.54 E-value=42 Score=20.48 Aligned_cols=50 Identities=6% Similarity=0.066 Sum_probs=38.9
Q ss_pred CCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhC
Q 029406 102 VLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152 (194)
Q Consensus 102 ~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~ 152 (194)
+.|....++.++..+++..-.++++..+.+...+|. .+..+|---++.++
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 457778899999999999999999999999999885 45555555555555
No 345
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=44.53 E-value=3e+02 Score=26.51 Aligned_cols=101 Identities=10% Similarity=0.004 Sum_probs=65.4
Q ss_pred hcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCH----------------------HHHHHHHHHHHhcCCCC
Q 029406 47 RQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKV----------------------VEAKQVWEDLKREEVLF 104 (194)
Q Consensus 47 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~----------------------~~a~~l~~~m~~~g~~p 104 (194)
+.....+|.++-..|.++ =+++|.++++.|.. +.-.+.|.++...--.-
T Consensus 1159 k~D~r~da~klk~~me~q---------k~tli~AL~kKg~a~ak~e~l~g~~e~daeee~s~ld~~~e~y~el~kw~d~~ 1229 (1304)
T KOG1114|consen 1159 KEDTRPDAVKLKKKMEKQ---------KDTLIDALVKKGEAFAKYEALKGHKEQDAEEELSKLDSYNENYQELLKWLDAS 1229 (1304)
T ss_pred ccCCcchHHHHHHHHHHH---------HHHHHHHHHHhhhHHhhhhhhcccccccchhhhhhhhhHHHHHHHHHHHhhcC
Confidence 344455677777777531 26788888877642 22233444444332223
Q ss_pred CHHhHHHHHHHHhcCCChHHHHHHHHHhHh-CCCCCChhhHHHHHHhhCCCCc
Q 029406 105 DQHTFGDIIRAFSDSGLPSEAMFIYNEMRS-SPATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 105 ~~~ty~~li~~~~~~g~~~~a~~l~~~M~~-~g~~p~~~ty~~ll~~~~~~g~ 156 (194)
|..++..-..-+...|.+..+..++.++.+ .|-.++-..|..++..+...|-
T Consensus 1230 dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw 1282 (1304)
T KOG1114|consen 1230 DSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGW 1282 (1304)
T ss_pred CchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCc
Confidence 555555555556677899999998888755 5778888888888888877775
No 346
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=44.27 E-value=90 Score=20.43 Aligned_cols=53 Identities=11% Similarity=0.071 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQV 93 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l 93 (194)
+-.+-..|-+.|-.+.+.+++...+.+.|-. .|...|+.++-.++...-|..+
T Consensus 35 ID~I~~~y~r~gL~EqvyQ~L~~W~~~eg~~---Atv~~Lv~AL~~c~l~~lAe~l 87 (90)
T cd08780 35 IDNLAYEYDREGLYEQAYQLLRRFIQSEGKK---ATLQRLVQALEENGLTSLAEDL 87 (90)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHccchHHHHHH
Confidence 3344445555666666666666665444433 5555566666665555555444
No 347
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=44.17 E-value=1.6e+02 Score=23.36 Aligned_cols=98 Identities=13% Similarity=-0.048 Sum_probs=64.4
Q ss_pred CHhHHHHHHHHHHhhcCC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHH
Q 029406 50 QVFLCMKLYDVVRKEIWY---RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAM 126 (194)
Q Consensus 50 ~~~~a~~~~~~m~~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~ 126 (194)
-...|.+.|+.......- ..+...-..++....+.|..+.-..++....... +...-..++.+++...+.+...
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~---~~~~k~~~l~aLa~~~d~~~~~ 221 (324)
T PF11838_consen 145 CVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNST---SPEEKRRLLSALACSPDPELLK 221 (324)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTS---THHHHHHHHHHHTT-S-HHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccC---CHHHHHHHHHhhhccCCHHHHH
Confidence 357788888888732122 4466667778888888888777667777665543 7788899999999999999999
Q ss_pred HHHHHhHhCCCCCChhhHHHHHHh
Q 029406 127 FIYNEMRSSPATPISLPFRVILKG 150 (194)
Q Consensus 127 ~l~~~M~~~g~~p~~~ty~~ll~~ 150 (194)
.+++.....+..+....+..+...
T Consensus 222 ~~l~~~l~~~~v~~~d~~~~~~~~ 245 (324)
T PF11838_consen 222 RLLDLLLSNDKVRSQDIRYVLAGL 245 (324)
T ss_dssp HHHHHHHCTSTS-TTTHHHHHHHH
T ss_pred HHHHHHcCCcccccHHHHHHHHHH
Confidence 999998886523333344444333
No 348
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.16 E-value=2.1e+02 Score=24.65 Aligned_cols=72 Identities=14% Similarity=0.084 Sum_probs=51.6
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 119 (194)
.++..|.+...+... -++. ..++..+..+++-+|..+...+-.+.++++|+-+.-.| ....|...+..+...
T Consensus 291 ~VL~~llre~lPkl~----~~l~-~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eG---skvlfr~Alai~k~~ 362 (436)
T KOG2058|consen 291 KVLRELLREKLPKLS----LHLE-GNGVDASLETLPWFLTLFVDILPSETVLRIWDCLFYEG---SKVLFRVALAILKKH 362 (436)
T ss_pred HHHHHHHHHHCHHHH----Hhhh-hcCCCeeeeehhhhHHHhcccccHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHh
Confidence 366666666555544 4444 56677788899999999999999999999999888887 445565555555444
No 349
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.89 E-value=1.9e+02 Score=26.72 Aligned_cols=81 Identities=19% Similarity=0.071 Sum_probs=53.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 119 (194)
.-+.-+...|+-..|.++-.+.+ .||-..|-.=+.+++..+++++.+++-..++. ..-|--.+.+|.+.
T Consensus 689 dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~ 757 (829)
T KOG2280|consen 689 DTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQ 757 (829)
T ss_pred HHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhc
Confidence 34555666677777777666654 37777777777777777777777666555432 22355667777788
Q ss_pred CChHHHHHHHHH
Q 029406 120 GLPSEAMFIYNE 131 (194)
Q Consensus 120 g~~~~a~~l~~~ 131 (194)
|+.++|...+..
T Consensus 758 ~n~~EA~KYipr 769 (829)
T KOG2280|consen 758 GNKDEAKKYIPR 769 (829)
T ss_pred ccHHHHhhhhhc
Confidence 887777766654
No 350
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=43.57 E-value=45 Score=23.52 Aligned_cols=33 Identities=12% Similarity=0.038 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Q 029406 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEV 102 (194)
Q Consensus 69 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 102 (194)
+|.+..+.||-.+ -.|+++.|+++.....++|.
T Consensus 47 qd~Vl~~~mvW~~-D~Gd~~~AL~~a~yAi~~~l 79 (132)
T PF05944_consen 47 QDDVLMTVMVWLF-DVGDFDGALDIAEYAIEHGL 79 (132)
T ss_pred cCchHHhhHhhhh-cccCHHHHHHHHHHHHHcCC
Confidence 4444444444433 56666666666666666663
No 351
>PLN03025 replication factor C subunit; Provisional
Probab=43.06 E-value=1.8e+02 Score=23.50 Aligned_cols=89 Identities=8% Similarity=-0.103 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-C-----------CCCCHHhHHHHHHHHhcC
Q 029406 52 FLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE-E-----------VLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 52 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g-----------~~p~~~ty~~li~~~~~~ 119 (194)
++....+....+..|+..+......++..+ .|+...++..++..... + -.|.......++..+ ..
T Consensus 161 ~~l~~~L~~i~~~egi~i~~~~l~~i~~~~--~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~-~~ 237 (319)
T PLN03025 161 QEILGRLMKVVEAEKVPYVPEGLEAIIFTA--DGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNC-LK 237 (319)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHH-Hc
Confidence 334444555444678887777777777654 48888888777644321 1 112333444555554 45
Q ss_pred CChHHHHHHHHHhHhCCCCCChhh
Q 029406 120 GLPSEAMFIYNEMRSSPATPISLP 143 (194)
Q Consensus 120 g~~~~a~~l~~~M~~~g~~p~~~t 143 (194)
++++.|...+.+|...|+.|....
T Consensus 238 ~~~~~a~~~l~~ll~~g~~~~~Il 261 (319)
T PLN03025 238 GKFDDACDGLKQLYDLGYSPTDII 261 (319)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHH
Confidence 889999999999999999886443
No 352
>COG5210 GTPase-activating protein [General function prediction only]
Probab=42.95 E-value=85 Score=27.27 Aligned_cols=46 Identities=20% Similarity=0.196 Sum_probs=22.2
Q ss_pred HHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCC
Q 029406 93 VWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPAT 138 (194)
Q Consensus 93 l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~ 138 (194)
++..|.+.|+.+...++.-++..+.+.-..+.+.++++-+-..|+.
T Consensus 364 l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~ 409 (496)
T COG5210 364 LYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSS 409 (496)
T ss_pred HHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccH
Confidence 4444444444444445555555555555555555544444444433
No 353
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=42.44 E-value=9.6 Score=22.52 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=27.8
Q ss_pred CChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCC
Q 029406 120 GLPSEAMFIYNEMRSSPATPISLPFRVILKGLIP 153 (194)
Q Consensus 120 g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~ 153 (194)
|-..+...+|..|..+.+.|....||-.+.-|..
T Consensus 6 gy~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~~ 39 (55)
T PF07443_consen 6 GYHEELIAVFKQMPSRNYDPKTRKWNFSLEDYST 39 (55)
T ss_pred cCCHHHHHHHHcCcccccCccceeeeeeHHHHHH
Confidence 5567788899999999888988888888877763
No 354
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=42.04 E-value=1e+02 Score=25.80 Aligned_cols=79 Identities=13% Similarity=0.084 Sum_probs=48.1
Q ss_pred HHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCC
Q 029406 43 AEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGL 121 (194)
Q Consensus 43 ~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 121 (194)
+-|.++|.+++|+..|..-.. .-| |.++|..--.+|.+.+.|..|..=....... =...+.+|++.+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y~KAYSRR~~ 173 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLYVKAYSRRMQ 173 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHHHHHHHHHHH
Confidence 346788899999988877642 334 7777777777787877777665433333222 1234566666655
Q ss_pred hHHHHHHHHHh
Q 029406 122 PSEAMFIYNEM 132 (194)
Q Consensus 122 ~~~a~~l~~~M 132 (194)
...++....+.
T Consensus 174 AR~~Lg~~~EA 184 (536)
T KOG4648|consen 174 ARESLGNNMEA 184 (536)
T ss_pred HHHHHhhHHHH
Confidence 55544444433
No 355
>PF00772 DnaB: DnaB-like helicase N terminal domain; InterPro: IPR007693 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This N-terminal domain is required both for interaction with other proteins in the primosome and for DnaB helicase activity. This domain has a multi-helical structure that forms an orthogonal bundle [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1B79_D 1JWE_A 3GXV_C 3BGW_C 2R6D_B 2R6C_D 2R6E_B 2R6A_A 2VYE_A 2VYF_B ....
Probab=42.02 E-value=94 Score=20.05 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=6.9
Q ss_pred CCHHHHHHHHHHHHhcC
Q 029406 85 KKVVEAKQVWEDLKREE 101 (194)
Q Consensus 85 g~~~~a~~l~~~m~~~g 101 (194)
|..-+...+...+...+
T Consensus 54 ~~~id~~~v~~~l~~~~ 70 (103)
T PF00772_consen 54 GEPIDPITVAEELSDEG 70 (103)
T ss_dssp TS--SHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHCC
Confidence 33334444555554443
No 356
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=41.91 E-value=2.6e+02 Score=25.02 Aligned_cols=89 Identities=11% Similarity=0.097 Sum_probs=51.5
Q ss_pred HhcCCHhHHHHHHHHHHhhcCCCCC-----HHHHHHHHHHHH--hCCCHHHHHHHHH--------HHHhcCCCCCHHhHH
Q 029406 46 QRQDQVFLCMKLYDVVRKEIWYRPD-----MFFYRDMLMMLA--RNKKVVEAKQVWE--------DLKREEVLFDQHTFG 110 (194)
Q Consensus 46 ~~~~~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~--~~g~~~~a~~l~~--------~m~~~g~~p~~~ty~ 110 (194)
+-.+++..|....+.+.....-.|+ ...+...+.+.. ..|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 3468899999999999743222222 233333333332 2589999999997 554556665665554
Q ss_pred HH----HHHHhcCCChHH--HHHHHHHhHh
Q 029406 111 DI----IRAFSDSGLPSE--AMFIYNEMRS 134 (194)
Q Consensus 111 ~l----i~~~~~~g~~~~--a~~l~~~M~~ 134 (194)
.+ |--+-.....++ ...+++.+..
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p 481 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEP 481 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCc
Confidence 42 222222233333 6777777643
No 357
>PRK09857 putative transposase; Provisional
Probab=41.59 E-value=1.9e+02 Score=23.33 Aligned_cols=64 Identities=13% Similarity=0.162 Sum_probs=28.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCC
Q 029406 74 YRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPAT 138 (194)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~ 138 (194)
+..+++...+.++.++..++++.+.+. +.......-++..-+-.-|..+++..+-..|...|+.
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 344444444555555555555555433 2222222223344444444444444555555555544
No 358
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=40.80 E-value=93 Score=23.79 Aligned_cols=56 Identities=13% Similarity=0.076 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhhcCC--------------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 029406 39 VSVLAEFQRQDQVFLCMKLYDVVRKEIWY--------------RPDMFFYRDMLMMLARNKKVVEAKQVWE 95 (194)
Q Consensus 39 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--------------~p~~~~~~~li~~~~~~g~~~~a~~l~~ 95 (194)
+++|-.|-+..+|.++.++++.|. +..+ .+.....|.....|.+.|..+.|+++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~-el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLH-ELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 478888889999999999999986 3333 2455677888999999999999999987
No 359
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=40.25 E-value=1e+02 Score=21.27 Aligned_cols=41 Identities=10% Similarity=-0.100 Sum_probs=23.6
Q ss_pred HhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 029406 51 VFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQ 92 (194)
Q Consensus 51 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 92 (194)
++.|++++.......|+. +..+-..+++...+.|-.++...
T Consensus 40 ~ElaWK~lK~~L~~~G~~-~~~spr~~~r~A~~~glI~d~e~ 80 (124)
T PF08780_consen 40 FELAWKTLKDYLEYEGIS-ECNSPRDVFREAFKAGLIDDGEI 80 (124)
T ss_dssp HHHHHHHHHHHHHHCTSS-CCTSHHHHHHHHHHTTSSSHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-ccCCHHHHHHHHHHcCCCCCHHH
Confidence 566777776665455663 33333666666666666655444
No 360
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=40.21 E-value=1.9e+02 Score=23.10 Aligned_cols=104 Identities=8% Similarity=0.010 Sum_probs=61.3
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC-CHHhHHHHHHHHhc
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF-DQHTFGDIIRAFSD 118 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~ 118 (194)
.++.-.-+.+++....+.+..++ ....-...|......|++..|+++..+....--.. ....+..|-
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~-------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~----- 170 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK-------TVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLS----- 170 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHh-----
Confidence 45555555555556666666664 34455667888889999999999998776531000 111111111
Q ss_pred CCChHHHHHHHHHhHhC---CC--CCChhhHHHHHHhhCCCCc
Q 029406 119 SGLPSEAMFIYNEMRSS---PA--TPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~---g~--~p~~~ty~~ll~~~~~~g~ 156 (194)
..+.+.......+.+. ++ ..|+..|..++.+|.-.|+
T Consensus 171 -~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk 212 (291)
T PF10475_consen 171 -SQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGK 212 (291)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 2233333333333322 12 4788999999999998887
No 361
>PRK09857 putative transposase; Provisional
Probab=40.12 E-value=1.3e+02 Score=24.31 Aligned_cols=74 Identities=9% Similarity=-0.034 Sum_probs=48.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCchhhhhhhhhh
Q 029406 109 FGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPEDLFEDQEWR 188 (194)
Q Consensus 109 y~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 188 (194)
+..++.=..+.++.++...+++...+. .++.....-++..-+.+.|. .+.+.++...|...|.+.+.+-+.-+.
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~-----qe~~~~ia~~ml~~g~~~~~I~~~TgL 282 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGE-----QSKALHIAKIMLESGVPLADIMRFTGL 282 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHcCCCHHHHHHHhCC
Confidence 555665556777777777777777655 33344455566677766665 556677777787778888876655444
No 362
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.07 E-value=2.8e+02 Score=25.81 Aligned_cols=104 Identities=9% Similarity=0.038 Sum_probs=76.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRP---DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
.=|+=+.+.+.+++|+..-+... |..| -...+...|..+.-.|.+++|-.+...|... +..-|--.+.-+
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~---~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f 433 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASI---GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKF 433 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhcc---CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHh
Confidence 34666778889999998877763 4455 4667888999999999999999998888776 677788888888
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCC
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIP 153 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~ 153 (194)
+..+.... ++..+....-..+...|..+|..|..
T Consensus 434 ~e~~~l~~---Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 434 AELDQLTD---IAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccccccch---hhccCCCCCcccCchHHHHHHHHHHH
Confidence 87777665 34444443323456778888877764
No 363
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.03 E-value=2.6e+02 Score=24.53 Aligned_cols=85 Identities=12% Similarity=-0.023 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCC----------CHHhHHHHHHHHhcCC
Q 029406 53 LCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE--VLF----------DQHTFGDIIRAFSDSG 120 (194)
Q Consensus 53 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p----------~~~ty~~li~~~~~~g 120 (194)
+..+.+....+..|+..+......++... .|+...|..+++++...+ +.. .....-.+++++ ..+
T Consensus 179 el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~~~ 255 (504)
T PRK14963 179 EIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-AQG 255 (504)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-HcC
Confidence 33444444333567777776666666554 478888888887765443 121 122344566665 558
Q ss_pred ChHHHHHHHHHhHhCCCCCC
Q 029406 121 LPSEAMFIYNEMRSSPATPI 140 (194)
Q Consensus 121 ~~~~a~~l~~~M~~~g~~p~ 140 (194)
+++.|+.+++++...|..|.
T Consensus 256 d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 256 DAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred CHHHHHHHHHHHHHcCCCHH
Confidence 99999999999999987664
No 364
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=39.90 E-value=49 Score=27.17 Aligned_cols=29 Identities=17% Similarity=0.172 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 029406 72 FFYRDMLMMLARNKKVVEAKQVWEDLKRE 100 (194)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 100 (194)
--.-.+|+.|.++|.+++|+++....++-
T Consensus 107 LElP~Lm~~ci~~g~y~eALel~~~~~~L 135 (338)
T PF04124_consen 107 LELPQLMDTCIRNGNYSEALELSAHVRRL 135 (338)
T ss_pred HhhHHHHHHHHhcccHhhHHHHHHHHHHH
Confidence 33457899999999999999998877653
No 365
>PHA02743 Viral ankyrin protein; Provisional
Probab=39.32 E-value=1.4e+02 Score=21.36 Aligned_cols=124 Identities=9% Similarity=-0.056 Sum_probs=60.3
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhhcCCCCCHH---HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHh---HHHHHHH
Q 029406 42 LAEFQRQDQVFLCMKLYDVVRKEIWYRPDMF---FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHT---FGDIIRA 115 (194)
Q Consensus 42 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t---y~~li~~ 115 (194)
+...++.|++....++++.+. ..+..++.. -++.|.. .+..|..+ ...+.+.+...|..++... -.+.+..
T Consensus 24 l~~a~~~g~~~~l~~~~~~l~-~~g~~~~~~d~~g~t~Lh~-Aa~~g~~~-~~~~i~~Ll~~Gadin~~d~~~g~TpLh~ 100 (166)
T PHA02743 24 FLRICRTGNIYELMEVAPFIS-GDGHLLHRYDHHGRQCTHM-VAWYDRAN-AVMKIELLVNMGADINARELGTGNTLLHI 100 (166)
T ss_pred HHHHHHcCCHHHHHHHHHHHh-hcchhhhccCCCCCcHHHH-HHHhCccC-HHHHHHHHHHcCCCCCCCCCCCCCcHHHH
Confidence 333457788887777777765 444333221 2333433 33444432 2233444556776666542 2344454
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCCh---hhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPIS---LPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~---~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
.+..|+.+-+..++.. .|..++. .-.+.+..++ ..|+ .+...-++.......+
T Consensus 101 A~~~g~~~iv~~Ll~~---~gad~~~~d~~g~tpL~~A~-~~~~-----~~iv~~Ll~~ga~~~~ 156 (166)
T PHA02743 101 AASTKNYELAEWLCRQ---LGVNLGAINYQHETAYHIAY-KMRD-----RRMMEILRANGAVCDD 156 (166)
T ss_pred HHHhCCHHHHHHHHhc---cCCCccCcCCCCCCHHHHHH-HcCC-----HHHHHHHHHcCCCCCC
Confidence 5567777665444432 3444433 2334444443 3445 4444444444433333
No 366
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=39.26 E-value=43 Score=22.70 Aligned_cols=49 Identities=14% Similarity=0.297 Sum_probs=28.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChH
Q 029406 75 RDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123 (194)
Q Consensus 75 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 123 (194)
..++......+..-.|.+|++.+...+...+..|.=..|..+.+.|-+.
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~ 59 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIR 59 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEE
Confidence 3455555555556667777777777666666665555555555555443
No 367
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=38.94 E-value=1.1e+02 Score=19.71 Aligned_cols=57 Identities=14% Similarity=0.253 Sum_probs=30.0
Q ss_pred HHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCc
Q 029406 92 QVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 92 ~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~ 156 (194)
.+++.+...|+- +......|- +.....+++..+++.+..+| ..+|.++.+++...|.
T Consensus 20 ~v~~~L~~~~Vl-t~~~~e~I~---~~~tr~~q~~~LLd~L~~RG----~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 20 YLWDHLLSRGVF-TPDMIEEIQ---AAGSRRDQARQLLIDLETRG----KQAFPAFLSALRETGQ 76 (84)
T ss_pred HHHHHHHhcCCC-CHHHHHHHH---cCCCHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCc
Confidence 455666666533 222222222 24455666666666666665 4555555555555554
No 368
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.71 E-value=2.8e+02 Score=25.20 Aligned_cols=78 Identities=10% Similarity=-0.012 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+-.+=+...+.+++..|.+.|..-+ .|..|+-++...|+.+....+-..-++.| -.|..+.+|.
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a~----------d~~~LlLl~t~~g~~~~l~~la~~~~~~g------~~N~AF~~~~ 732 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRAR----------DLGSLLLLYTSSGNAEGLAVLASLAKKQG------KNNLAFLAYF 732 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhhc----------chhhhhhhhhhcCChhHHHHHHHHHHhhc------ccchHHHHHH
Confidence 3455566667788888887777665 36789999999998887766666666666 3566778889
Q ss_pred cCCChHHHHHHHHH
Q 029406 118 DSGLPSEAMFIYNE 131 (194)
Q Consensus 118 ~~g~~~~a~~l~~~ 131 (194)
..|+++++.+++..
T Consensus 733 l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 733 LSGDYEECLELLIS 746 (794)
T ss_pred HcCCHHHHHHHHHh
Confidence 99999998887765
No 369
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=38.64 E-value=60 Score=23.28 Aligned_cols=43 Identities=26% Similarity=0.194 Sum_probs=29.2
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhh
Q 029406 108 TFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151 (194)
Q Consensus 108 ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~ 151 (194)
|...++.++ +.|-+.+...++++|.++|+......|+-++.-.
T Consensus 112 tlGvL~~ak-~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 112 TLGVLALAK-SKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred hhHHHHHHH-HcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 455555443 4467777778888888888887777777776543
No 370
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=38.28 E-value=73 Score=22.85 Aligned_cols=44 Identities=9% Similarity=0.163 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 72 FFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
.|...++.+. +.|...+...+.++|.+.|+..+...|+-++.-.
T Consensus 111 GtlGvL~~ak-~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 111 GTLGVLALAK-SKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred ehhHHHHHHH-HcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 3444444444 6677888889999999999999999999887653
No 371
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=37.95 E-value=1.4e+02 Score=20.69 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=20.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhcC
Q 029406 77 MLMMLARNKKVVEAKQVWEDLKREE 101 (194)
Q Consensus 77 li~~~~~~g~~~~a~~l~~~m~~~g 101 (194)
+|+.+.++...++|+.+.+.|.+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 4556677888888888888888887
No 372
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=37.61 E-value=19 Score=27.20 Aligned_cols=80 Identities=10% Similarity=0.078 Sum_probs=57.2
Q ss_pred hhhhchhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhH
Q 029406 30 VSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTF 109 (194)
Q Consensus 30 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty 109 (194)
...+.+..+..++..|...|+.+...++.=++- |+.-..+.++..|-+.|.++.-.-+|.+....=+.|=...+
T Consensus 17 i~~lpp~v~k~lv~~y~~~~~~~~lE~lI~~LD------~~~LDidq~i~lC~~~~LydalIYv~n~~l~DYvTPL~~ll 90 (196)
T PF12816_consen 17 IKSLPPEVFKALVEHYASKGRLERLEQLILHLD------PSSLDIDQVIKLCKKHGLYDALIYVWNRALNDYVTPLEELL 90 (196)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCC------HHhcCHHHHHHHHHHCCCCCeeeeeeeccccCCcHHHHHHH
Confidence 345556677889999999999888777766664 66777788999999999988888887766433355555555
Q ss_pred HHHHHH
Q 029406 110 GDIIRA 115 (194)
Q Consensus 110 ~~li~~ 115 (194)
..+-..
T Consensus 91 ~~i~~~ 96 (196)
T PF12816_consen 91 ELIRSA 96 (196)
T ss_pred HHHHHh
Confidence 544444
No 373
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=37.45 E-value=1.7e+02 Score=21.58 Aligned_cols=112 Identities=13% Similarity=0.117 Sum_probs=73.4
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHh
Q 029406 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 55 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~ 134 (194)
.+....+. ..+++|+...|..+|+.+.+.|++... .++...++-||....-..+-.+.. ....+.++=-+|..
T Consensus 14 lEYirSl~-~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSLN-QHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHH
Confidence 34445555 688999999999999999999987776 455567877777766665544433 33444454444433
Q ss_pred C-CCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc-cccCC-chhhhh
Q 029406 135 S-PATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM-IVYDP-PEDLFE 183 (194)
Q Consensus 135 ~-g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m-~~~~~-~~~~~~ 183 (194)
+ | ..|..+++.+-..|+ .-+|..+.... ....+ |..+++
T Consensus 87 RL~-----~~~~~iievLL~~g~-----vl~ALr~ar~~~~~~~~~~~~fLe 128 (167)
T PF07035_consen 87 RLG-----TAYEEIIEVLLSKGQ-----VLEALRYARQYHKVDSVPARKFLE 128 (167)
T ss_pred Hhh-----hhHHHHHHHHHhCCC-----HHHHHHHHHHcCCcccCCHHHHHH
Confidence 3 2 357777888888888 77777777663 33333 334444
No 374
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=37.36 E-value=1.7e+02 Score=25.88 Aligned_cols=86 Identities=13% Similarity=-0.029 Sum_probs=63.0
Q ss_pred HHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHH
Q 029406 45 FQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSE 124 (194)
Q Consensus 45 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 124 (194)
+...|+++.+.+...... .-+.....+-.++|+...+.|++++|..+-..|....++ +..........--..|-+++
T Consensus 333 ~~~lg~ye~~~~~~s~~~--~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~ 409 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVE--KIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDK 409 (831)
T ss_pred HHHhhhHHHHHHHhhchh--hhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHH
Confidence 445799999998888774 345566778889999999999999999999999877766 33222222223334578888
Q ss_pred HHHHHHHhH
Q 029406 125 AMFIYNEMR 133 (194)
Q Consensus 125 a~~l~~~M~ 133 (194)
++..|.+..
T Consensus 410 ~~~~wk~~~ 418 (831)
T PRK15180 410 SYHYWKRVL 418 (831)
T ss_pred HHHHHHHHh
Confidence 888888764
No 375
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=37.34 E-value=44 Score=14.94 Aligned_cols=26 Identities=19% Similarity=0.186 Sum_probs=17.2
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhH
Q 029406 108 TFGDIIRAFSDSGLPSEAMFIYNEMR 133 (194)
Q Consensus 108 ty~~li~~~~~~g~~~~a~~l~~~M~ 133 (194)
+|..+-..|...|+++.|...|+...
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45556666677777777777776654
No 376
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=36.66 E-value=1e+02 Score=20.35 Aligned_cols=63 Identities=13% Similarity=0.033 Sum_probs=36.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCC-Ch-HHHHHHHHHhHhCCCC
Q 029406 74 YRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG-LP-SEAMFIYNEMRSSPAT 138 (194)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g-~~-~~a~~l~~~M~~~g~~ 138 (194)
...+|.-|...|+.++|..-+.++.... -.......+|..+...+ .. +..-.++..+...+..
T Consensus 5 i~~~l~ey~~~~d~~ea~~~l~el~~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 5 IFSILMEYFSSGDVDEAVECLKELKLPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHTT-GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 3556677778899999998888764331 22334455555555552 22 3344477777766544
No 377
>PRK14700 recombination factor protein RarA; Provisional
Probab=36.62 E-value=60 Score=26.33 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=45.9
Q ss_pred HHHHHhc---CCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCchh
Q 029406 112 IIRAFSD---SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180 (194)
Q Consensus 112 li~~~~~---~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~ 180 (194)
+|+++-| ..+.+.|.-++..|.+.|..|....=..++-+...-|.-.......|...++-...-|.|+-
T Consensus 129 ~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PEa 200 (300)
T PRK14700 129 QLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEG 200 (300)
T ss_pred HHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChHH
Confidence 3555544 46888888888999988888888888888877776664222334444444554456666654
No 378
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=36.28 E-value=1.2e+02 Score=19.74 Aligned_cols=68 Identities=9% Similarity=-0.009 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHH
Q 029406 53 LCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127 (194)
Q Consensus 53 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 127 (194)
.+-++++.+. +.|+- +......+..+=...|+.+.|.+++..+. .| ...|+..+.++-..|..+-|.+
T Consensus 20 ~~~~v~d~ll-~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 20 KTRDVCDKCL-EQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELARE 87 (88)
T ss_pred hHHHHHHHHH-hcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhhc
Confidence 3556777776 45533 33333344333345688899999999887 52 3468888888888887666543
No 379
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.98 E-value=2.9e+02 Score=23.97 Aligned_cols=85 Identities=13% Similarity=-0.026 Sum_probs=48.9
Q ss_pred hcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-C--CCC----------CHHhHHHHHHHHhcCCChHHHHHHHH
Q 029406 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE-E--VLF----------DQHTFGDIIRAFSDSGLPSEAMFIYN 130 (194)
Q Consensus 64 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g--~~p----------~~~ty~~li~~~~~~g~~~~a~~l~~ 130 (194)
..|+..+......++... .|++..++..++.+... + +.. .......++.+ .+.++++.|..++.
T Consensus 191 ~egi~i~~eal~~Ia~~s--~GdlR~aln~Le~l~~~~~~~It~e~V~~~l~~~~~~~i~~li~s-i~~~d~~~Al~~l~ 267 (472)
T PRK14962 191 AEGIEIDREALSFIAKRA--SGGLRDALTMLEQVWKFSEGKITLETVHEALGLIPIEVVRDYINA-IFNGDVKRVFTVLD 267 (472)
T ss_pred HcCCCCCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHH-HHcCCHHHHHHHHH
Confidence 345555555555554432 46666666666654431 1 111 12334444554 35589999999999
Q ss_pred HhHhCCCCCChhhHHHHHHhh
Q 029406 131 EMRSSPATPISLPFRVILKGL 151 (194)
Q Consensus 131 ~M~~~g~~p~~~ty~~ll~~~ 151 (194)
.|...|..|....-..+..++
T Consensus 268 ~ll~~Gedp~~i~r~l~~~~~ 288 (472)
T PRK14962 268 DVYYSGKDYEVLIQQAIEDLV 288 (472)
T ss_pred HHHHcCCCHHHHHHHHHHHHH
Confidence 999888887665444444333
No 380
>PF13934 ELYS: Nuclear pore complex assembly
Probab=35.41 E-value=2.1e+02 Score=22.06 Aligned_cols=61 Identities=15% Similarity=0.114 Sum_probs=36.9
Q ss_pred hcCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHh
Q 029406 64 EIWYRPDMFFYRDMLMMLARN--KKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEM 132 (194)
Q Consensus 64 ~~~~~p~~~~~~~li~~~~~~--g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M 132 (194)
..++++. |..+|.+|... +++++|..++. ...+.|+... -++.++...|+.+.|..+++-+
T Consensus 72 ~f~ip~~---~~~~~~g~W~LD~~~~~~A~~~L~---~ps~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 72 AFGIPPK---YIKFIQGFWLLDHGDFEEALELLS---HPSLIPWFPD--KILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HhCCCHH---HHHHHHHHHHhChHhHHHHHHHhC---CCCCCcccHH--HHHHHHHHCCChhHHHHHHHhc
Confidence 3455543 45556666653 56777766663 2234444322 4777777788888888877764
No 381
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.34 E-value=3.1e+02 Score=24.02 Aligned_cols=86 Identities=9% Similarity=-0.053 Sum_probs=51.8
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CC----------CCHHhHHHHHHHHhcCCC
Q 029406 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE---VL----------FDQHTFGDIIRAFSDSGL 121 (194)
Q Consensus 55 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g---~~----------p~~~ty~~li~~~~~~g~ 121 (194)
.+.+....+..|+..+......+... ..|...+|+.++++....+ +. ++...+..++.+....+.
T Consensus 186 ~~~L~~i~~~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~lg~~~~~~~~~l~~si~~~d~ 263 (484)
T PRK14956 186 QDYSEKLCKIENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIGYHGIEFLTSFIKSLIDPDN 263 (484)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHHHhCCCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCc
Confidence 34444443345666666655555433 3477888888887754321 11 133345556665555555
Q ss_pred hHHHHHHHHHhHhCCCCCChh
Q 029406 122 PSEAMFIYNEMRSSPATPISL 142 (194)
Q Consensus 122 ~~~a~~l~~~M~~~g~~p~~~ 142 (194)
...++.+++.|.+.|..|...
T Consensus 264 ~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 264 HSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred HHHHHHHHHHHHHcCCCHHHH
Confidence 678899999999998877643
No 382
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=34.79 E-value=3.2e+02 Score=24.12 Aligned_cols=103 Identities=13% Similarity=-0.060 Sum_probs=59.3
Q ss_pred HHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC-HHhHHHHHHHHhcCCC
Q 029406 43 AEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFD-QHTFGDIIRAFSDSGL 121 (194)
Q Consensus 43 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~ 121 (194)
..+.+.|++..|+..|.++.+ .. +-|...|.--=-+|.+.|.+..|+.=.+.-.+. .|+ ..-|.-=-.++--..+
T Consensus 366 ne~Fk~gdy~~Av~~YteAIk-r~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ 441 (539)
T KOG0548|consen 366 NEAFKKGDYPEAVKHYTEAIK-RD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKE 441 (539)
T ss_pred HHHHhccCHHHHHHHHHHHHh-cC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHH
Confidence 345577888888888888863 22 446777777777788888888777655444433 222 2223222333333456
Q ss_pred hHHHHHHHHHhHhCCCCCChhhHHHHHHhh
Q 029406 122 PSEAMFIYNEMRSSPATPISLPFRVILKGL 151 (194)
Q Consensus 122 ~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~ 151 (194)
+++|++.|++-.+. .|+..-+.-.+.-|
T Consensus 442 ydkAleay~eale~--dp~~~e~~~~~~rc 469 (539)
T KOG0548|consen 442 YDKALEAYQEALEL--DPSNAEAIDGYRRC 469 (539)
T ss_pred HHHHHHHHHHHHhc--CchhHHHHHHHHHH
Confidence 67777777765544 24444333333333
No 383
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.46 E-value=3.3e+02 Score=24.10 Aligned_cols=128 Identities=5% Similarity=-0.086 Sum_probs=74.1
Q ss_pred HHhcCCHhHHHHHHHHHHhh------cCCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHhcCCCCCHHhHHHHH
Q 029406 45 FQRQDQVFLCMKLYDVVRKE------IWYRPDMFFYRDMLMMLARNK-----KVVEAKQVWEDLKREEVLFDQHTFGDII 113 (194)
Q Consensus 45 ~~~~~~~~~a~~~~~~m~~~------~~~~p~~~~~~~li~~~~~~g-----~~~~a~~l~~~m~~~g~~p~~~ty~~li 113 (194)
++...+++.|+..|+..-++ .+ .....+-+=.+|.+.. +.+.|+.++.+-.+.|.+ +...+-..+
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~ 334 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVL 334 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHH
Confidence 44567788888888877521 33 2223344444554432 566688888877777743 655554444
Q ss_pred HHHhc-CCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCchh
Q 029406 114 RAFSD-SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180 (194)
Q Consensus 114 ~~~~~-~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~ 180 (194)
.-... ..+...|..+|......|..+ ..-+.+++. ..|...++....|+.++......++|..
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~~-A~~~la~~y---~~G~gv~r~~~~A~~~~k~aA~~g~~~A 398 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHIL-AIYRLALCY---ELGLGVERNLELAFAYYKKAAEKGNPSA 398 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCChH-HHHHHHHHH---HhCCCcCCCHHHHHHHHHHHHHccChhh
Confidence 44444 356778888888887777552 222222222 2222234447788888887766665554
No 384
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=34.00 E-value=3.3e+02 Score=23.96 Aligned_cols=85 Identities=13% Similarity=0.145 Sum_probs=54.7
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC------C----------CCCHHhHHHHHHHHh
Q 029406 54 CMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE------V----------LFDQHTFGDIIRAFS 117 (194)
Q Consensus 54 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g------~----------~p~~~ty~~li~~~~ 117 (194)
....+....+..|+..+......+... ..|.+..|+.++++....+ + .++....-.++.+..
T Consensus 192 l~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~ai~ 269 (507)
T PRK06645 192 IFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVEYII 269 (507)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 344444444356777676666666553 3578888888888774321 1 123444555666654
Q ss_pred cCCChHHHHHHHHHhHhCCCCCCh
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPIS 141 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~~ 141 (194)
+ |+...|+.+++++...|..|..
T Consensus 270 ~-~d~~~Al~~l~~L~~~g~~~~~ 292 (507)
T PRK06645 270 H-RETEKAINLINKLYGSSVNLEI 292 (507)
T ss_pred c-CCHHHHHHHHHHHHHcCCCHHH
Confidence 4 8899999999999998887654
No 385
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.57 E-value=84 Score=20.31 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=21.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcC
Q 029406 76 DMLMMLARNKKVVEAKQVWEDLKREE 101 (194)
Q Consensus 76 ~li~~~~~~g~~~~a~~l~~~m~~~g 101 (194)
++++.+.++.--++|+.+.+.|.+.|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 45666778888999999999999888
No 386
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=33.37 E-value=2.8e+02 Score=22.97 Aligned_cols=61 Identities=8% Similarity=0.097 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhCCCHHHHHH---------------HHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhH
Q 029406 73 FYRDMLMMLARNKKVVEAKQ---------------VWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~---------------l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~ 133 (194)
+|.-|+.++|..|+.+-.+- .|.+....=++.++.+=.+++.+|-+......-...+++|+
T Consensus 323 ~yaPLL~af~s~g~sEL~Ll~KvQe~CYen~~fMKaFqkiV~lfYk~dVLsEe~IL~Wyk~gh~~KGk~~Fleqmk 398 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELELLLKVQEYCYENIHFMKAFQKIVVLFYKADVLSEETILKWYKEGHVAKGKSVFLEQMK 398 (412)
T ss_pred hhhHHHHHHhcCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccccccHHHHHHHHH
Confidence 57778888888887654432 22333222233355555566666644433333333444453
No 387
>PF15469 Sec5: Exocyst complex component Sec5
Probab=33.19 E-value=1.9e+02 Score=21.10 Aligned_cols=55 Identities=13% Similarity=0.116 Sum_probs=31.5
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLK 98 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 98 (194)
-+..++..-.+...+..++.+++..+ ..+..-.-|.-|.+.|+++.+..-|.+.+
T Consensus 59 ~~~pll~~~~k~~~l~~~l~~l~r~~-------flF~LP~~L~~~i~~~dy~~~i~dY~kak 113 (182)
T PF15469_consen 59 VFKPLLERREKADKLRNALEFLQRNR-------FLFNLPSNLRECIKKGDYDQAINDYKKAK 113 (182)
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 34455555555566666666666665 22333355566666677766666665554
No 388
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=32.33 E-value=1.5e+02 Score=19.39 Aligned_cols=43 Identities=19% Similarity=0.211 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHh
Q 029406 92 QVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 92 ~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~ 134 (194)
++|+--...|+..|...|..++..+--+--.+...+++..|-.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 6777777777777888888887777777777777777777744
No 389
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.30 E-value=2.1e+02 Score=26.48 Aligned_cols=102 Identities=16% Similarity=0.108 Sum_probs=72.7
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHh
Q 029406 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 55 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~ 134 (194)
+++++.+..+.|+.-.--+.+--+.-+..-|+..+|.++-.+.+ .||-..|--=+.+++..+++++-+++-+.++.
T Consensus 668 l~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks 743 (829)
T KOG2280|consen 668 LKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS 743 (829)
T ss_pred HHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC
Confidence 44555555455554445566677777888999999987766552 46999999999999999999996666555432
Q ss_pred CCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccc
Q 029406 135 SPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 135 ~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~ 171 (194)
+.=|...+..|.+.|+ .++|.+.+..
T Consensus 744 ------PIGy~PFVe~c~~~~n-----~~EA~KYipr 769 (829)
T KOG2280|consen 744 ------PIGYLPFVEACLKQGN-----KDEAKKYIPR 769 (829)
T ss_pred ------CCCchhHHHHHHhccc-----HHHHhhhhhc
Confidence 3446666777777777 7777777663
No 390
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=32.13 E-value=96 Score=20.67 Aligned_cols=58 Identities=10% Similarity=-0.019 Sum_probs=40.9
Q ss_pred HHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChH---HHHHHHHHhHhCCCC
Q 029406 81 LARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS---EAMFIYNEMRSSPAT 138 (194)
Q Consensus 81 ~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~---~a~~l~~~M~~~g~~ 138 (194)
+....+.+.+++.........+-|+..|=+.+|.++.+...+. +|..+=..+.+.|+-
T Consensus 6 v~sMqDp~~GIk~~~~~~~~tv~~hcftGsdVVdWLv~~~~v~~r~EAl~las~Ll~eGyL 66 (99)
T cd04445 6 YLSMKDPEKGIKELNLEKDKKVFNHCFTGSCVIDWLVSNQSVRNRQEGLMLASSLLNEGYL 66 (99)
T ss_pred HHHHhCcccchhhhhHHHhhccccceecccHHHHHHHHhhcccchHHHHHHHHHHHHcCCe
Confidence 3444456666666666666667788888888888888887664 677777777777763
No 391
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=31.94 E-value=34 Score=21.11 Aligned_cols=37 Identities=14% Similarity=0.138 Sum_probs=20.3
Q ss_pred CCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCC
Q 029406 119 SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYP 155 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g 155 (194)
.++.+.+.+++++..+.|+.|.......+..+.-+-|
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4556666666666665566665555555555544333
No 392
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=31.83 E-value=85 Score=21.45 Aligned_cols=90 Identities=8% Similarity=-0.028 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHH
Q 029406 52 FLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYN 130 (194)
Q Consensus 52 ~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~ 130 (194)
..+.+.+..++...|+.| |+.+=-++-..+.....+... ..-...|++.|-.||. |+++..+..+=
T Consensus 6 ~~~~~~L~~Lk~~tgi~~~Nil~R~A~~~SL~~~~~~~~~----~~~~d~g~e~~~~t~~---------Ge~~~~~~~ll 72 (113)
T PF08870_consen 6 KKAKEQLKKLKRRTGITPWNILCRIAFCRSLEEPSIPSDE----DIKDDSGLELNWKTFT---------GEYDDIYEALL 72 (113)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHccCCCCCCC----ccCCCCCeEEeeeeec---------CchHHHHHHHH
Confidence 456777777776778888 666555555554443333210 0001224444444443 66666666555
Q ss_pred HhHhCCCCCChhhHHHHHHhhCCCC
Q 029406 131 EMRSSPATPISLPFRVILKGLIPYP 155 (194)
Q Consensus 131 ~M~~~g~~p~~~ty~~ll~~~~~~g 155 (194)
.+.- |...|...+.-.++.....|
T Consensus 73 ~q~~-g~~~d~~~l~~~~~~Hl~rG 96 (113)
T PF08870_consen 73 KQRY-GPELDDEELPKYFKLHLDRG 96 (113)
T ss_pred HHHh-CCCCCHHHHHHHHHHHHHHh
Confidence 5444 55557777777776666444
No 393
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=31.58 E-value=2.6e+02 Score=22.12 Aligned_cols=131 Identities=18% Similarity=0.123 Sum_probs=77.4
Q ss_pred chhhHH-HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCCCHHhHHH
Q 029406 34 LKSDLV-SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE-VLFDQHTFGD 111 (194)
Q Consensus 34 ~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~ty~~ 111 (194)
.++++. .++....+.|..+.-..+++..+ -.++...-..++.+.+...+.+-..++++.....+ ++ +.. ...
T Consensus 167 i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~----~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~-~~d-~~~ 240 (324)
T PF11838_consen 167 IPPDLRWAVYCAGVRNGDEEEWDFLWELYK----NSTSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVR-SQD-IRY 240 (324)
T ss_dssp S-HHHHHHHHHHHTTS--HHHHHHHHHHHH----TTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS--TTT-HHH
T ss_pred cchHHHHHHHHHHHHHhhHhhHHHHHHHHh----ccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccc-cHH-HHH
Confidence 345553 56777777887666555665555 33578888999999999999999999999888865 44 333 345
Q ss_pred HHHHHhcCCC--hHHHHHHHHHh---HhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccc
Q 029406 112 IIRAFSDSGL--PSEAMFIYNEM---RSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 112 li~~~~~~g~--~~~a~~l~~~M---~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~ 171 (194)
++.++...+. .+.++..+..= ....+..+..+...++..+...-. .+...++..++|+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~~~~-t~~~~~~~~~f~~~ 304 (324)
T PF11838_consen 241 VLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAGNFS-TEEQLDELEEFFED 304 (324)
T ss_dssp HHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCTT---SHHHHHHHHHHHHH
T ss_pred HHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhccCC-CHHHHHHHHHHHhh
Confidence 5555553433 37777766542 223344444467777777654332 33336777777753
No 394
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=31.51 E-value=1.8e+02 Score=20.25 Aligned_cols=43 Identities=12% Similarity=0.120 Sum_probs=22.1
Q ss_pred HHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhH
Q 029406 91 KQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMR 133 (194)
Q Consensus 91 ~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~ 133 (194)
--++..+.+.++.-....|.-+=.-|.+..++.+|-.+|+-++
T Consensus 83 cvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kllk 125 (126)
T PF10155_consen 83 CVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLLK 125 (126)
T ss_pred HHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHHh
Confidence 3344444444444334444455555555566666666666543
No 395
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=31.38 E-value=1.4e+02 Score=27.61 Aligned_cols=97 Identities=18% Similarity=0.232 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC----C-CCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhH
Q 029406 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREE----V-LFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPF 144 (194)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g----~-~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty 144 (194)
|+-.||++|..++.. ....++|.+....| + .|+......|...+.+-|-.--|+..+.+|.+.+. ...+=
T Consensus 213 NTCFFNavMQnL~qt---~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~~~e~~e~~k--sv~~P 287 (877)
T KOG1873|consen 213 NTCFFNAVMQNLAQT---PALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALANLLEMSETTK--SVITP 287 (877)
T ss_pred chhhHHHHHHHHhhc---HHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHhhhhhhhccC--CccCH
Confidence 678899999999854 55667788888887 4 46667788888899999998888888889977632 23333
Q ss_pred HHHHHhhC-CCCchHHhHHHHHhhhccc
Q 029406 145 RVILKGLI-PYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 145 ~~ll~~~~-~~g~~~~~~~~~a~~~~~~ 171 (194)
..|+..+| +..+++.-..+.+.++++.
T Consensus 288 r~lF~~~C~k~pqF~g~~QhDsHELLR~ 315 (877)
T KOG1873|consen 288 RTLFGQFCSKAPQFRGYDQHDSHELLRC 315 (877)
T ss_pred HHHHHHHHHhCCcccccccccHHHHHHH
Confidence 44444433 4444444446667776654
No 396
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=31.25 E-value=73 Score=15.57 Aligned_cols=19 Identities=16% Similarity=0.125 Sum_probs=8.7
Q ss_pred HHHHhCCCHHHHHHHHHHH
Q 029406 79 MMLARNKKVVEAKQVWEDL 97 (194)
Q Consensus 79 ~~~~~~g~~~~a~~l~~~m 97 (194)
..|...|++++|...|.+.
T Consensus 9 ~~y~~~~~~~~A~~~~~~a 27 (34)
T PF13181_consen 9 KIYEQLGDYEEALEYFEKA 27 (34)
T ss_dssp HHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 3444444444444444443
No 397
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.56 E-value=4e+02 Score=23.92 Aligned_cols=81 Identities=12% Similarity=0.027 Sum_probs=49.0
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC----C----------CCHHhHHHHHHHHhcCCCh
Q 029406 57 LYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEV----L----------FDQHTFGDIIRAFSDSGLP 122 (194)
Q Consensus 57 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~----~----------p~~~ty~~li~~~~~~g~~ 122 (194)
.+....+..|+..+......++. ...|+...++.+++++...+- . .+......++.+ ...++.
T Consensus 185 ~L~~i~~~egi~i~~~al~~Ia~--~s~GdlR~aln~Ldql~~~~~~~~It~~~v~~llg~~~~~~i~~lv~a-l~~~d~ 261 (584)
T PRK14952 185 LIARICEQEGVVVDDAVYPLVIR--AGGGSPRDTLSVLDQLLAGAADTHVTYQRALGLLGATDVALIDDAVDA-LAADDA 261 (584)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHhccCCCCcCHHHHHHHHCCCCHHHHHHHHHH-HHcCCH
Confidence 33333334566666665555544 335788888888887654321 1 122223344553 345889
Q ss_pred HHHHHHHHHhHhCCCCCC
Q 029406 123 SEAMFIYNEMRSSPATPI 140 (194)
Q Consensus 123 ~~a~~l~~~M~~~g~~p~ 140 (194)
..++.+++++...|..|.
T Consensus 262 ~~al~~l~~l~~~g~d~~ 279 (584)
T PRK14952 262 AALFGAIESVIDAGHDPR 279 (584)
T ss_pred HHHHHHHHHHHHcCCCHH
Confidence 999999999988887664
No 398
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=30.35 E-value=2.2e+02 Score=20.72 Aligned_cols=52 Identities=23% Similarity=0.215 Sum_probs=40.4
Q ss_pred hCCCHHHHHHHHHHHHhc-CCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCC
Q 029406 83 RNKKVVEAKQVWEDLKRE-EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSP 136 (194)
Q Consensus 83 ~~g~~~~a~~l~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g 136 (194)
..++++++..+++.|.-- .-.|...+|-..|. ...|++++|.++|+...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~--i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLL--IARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHH--HHcCCHHHHHHHHHhhhccC
Confidence 378999999999998643 23345566766664 58999999999999998775
No 399
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=30.19 E-value=2.1e+02 Score=20.56 Aligned_cols=68 Identities=13% Similarity=0.030 Sum_probs=45.5
Q ss_pred hhchhhHHHHHHHHHhc---CCHhHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 029406 32 RLLKSDLVSVLAEFQRQ---DQVFLCMKLYDVVRK-EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100 (194)
Q Consensus 32 ~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~m~~-~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 100 (194)
.++...-+.+-.++.+. .++.+.+.+++...+ .+.-..-...|..- -++.|.++++.+.++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLA-vg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLA-VGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhH-HHHHHHhhHHHHHHHHHHHHhh
Confidence 45556667777888775 456678889999873 12222223344433 4566999999999999988766
No 400
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=30.11 E-value=1.7e+02 Score=19.35 Aligned_cols=63 Identities=6% Similarity=-0.045 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHhcC
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNK--KVVEAKQVWEDLKREE 101 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~l~~~m~~~g 101 (194)
.....+|..|...+++++|..-+..+. .... -......+|..+...+ .-+.+..++..+.+.+
T Consensus 3 k~i~~~l~ey~~~~D~~ea~~~l~~L~-~~~~--~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~ 67 (113)
T smart00544 3 KKIFLIIEEYLSSGDTDEAVHCLLELK-LPEQ--HHEVVKVLLTCALEEKRTYREMYSVLLSRLCQAN 67 (113)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhC-CCcc--hHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcC
Confidence 345568888889999999999998886 2221 1223334444444432 2333445556655554
No 401
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.58 E-value=4e+02 Score=23.57 Aligned_cols=69 Identities=17% Similarity=0.042 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC---C---CCCChhhHHHHHHhhCCC
Q 029406 84 NKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS---P---ATPISLPFRVILKGLIPY 154 (194)
Q Consensus 84 ~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~---g---~~p~~~ty~~ll~~~~~~ 154 (194)
..+.+.|...+-.|...|+.++..|...++..++++ .+.-.++.++..+. | ..-+..+--.++++|++.
T Consensus 311 ~l~~k~~~~~~~dll~aGvDTTs~tl~~~Ly~Larn--P~~Q~~L~~Ei~~~~p~~~~~~~~~~l~~~pyLrAcIKE 385 (519)
T KOG0159|consen 311 ELSRKDAKANVMDLLAAGVDTTSNTLLWALYELARN--PEVQQRLREEILAVLPSGNSELTQKALTNMPYLRACIKE 385 (519)
T ss_pred cCCHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcC--hHHHHHHHHHHHhhCCCcccccchHHHhhCHHHHHHHHh
Confidence 356788888888999999888877777777666655 44444566665432 1 111123444456777643
No 402
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=29.34 E-value=4.1e+02 Score=23.63 Aligned_cols=102 Identities=16% Similarity=0.163 Sum_probs=59.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC--HHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhh
Q 029406 74 YRDMLMMLARNKKVVEAKQVWEDLKREEVLFD--QHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151 (194)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~ 151 (194)
...++.-|.+.+.+++|..++..|. .+..+. -.+.+.+.+.+.+..--.+....++.+...=+.|....-..+..-|
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smn-W~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey 489 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMN-WNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEY 489 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-ccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHH
Confidence 3467778999999999999999884 222211 1345667777777776666677777766553334332222222222
Q ss_pred CCCCchHHhHHHHHhhhcccccccCCchhhh
Q 029406 152 IPYPEFREKVKDDFLELFPDMIVYDPPEDLF 182 (194)
Q Consensus 152 ~~~g~~~~~~~~~a~~~~~~m~~~~~~~~~~ 182 (194)
++.+.+.|+++|..|..++--+..|
T Consensus 490 ------~d~V~~~aRRfFhhLLR~~rfekAF 514 (545)
T PF11768_consen 490 ------RDPVSDLARRFFHHLLRYQRFEKAF 514 (545)
T ss_pred ------HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 2233555566666655555444433
No 403
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.23 E-value=4.1e+02 Score=25.20 Aligned_cols=113 Identities=11% Similarity=0.033 Sum_probs=64.4
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhc----CCCCCHHHHHHHHHHHHhCCCH--HHHHHHHHHHHhcCCCCCHHhHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEI----WYRPDMFFYRDMLMMLARNKKV--VEAKQVWEDLKREEVLFDQHTFGD 111 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~~p~~~~~~~li~~~~~~g~~--~~a~~l~~~m~~~g~~p~~~ty~~ 111 (194)
+..++.-|...|+.++|+++|...-+.. +..++. +--+++..-+.+.. +-+++.-.......-.-....|+.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~--~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDG--LEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhh--HHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence 4578888888999999999998886322 111222 22255555555443 222222222211110001111111
Q ss_pred ------------HHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhC
Q 029406 112 ------------IIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152 (194)
Q Consensus 112 ------------li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~ 152 (194)
.+-.|.+....+-+...++.+....-.++...++.++.-|+
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 23456677788888899999877755677788888887776
No 404
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=29.22 E-value=53 Score=22.80 Aligned_cols=28 Identities=14% Similarity=0.056 Sum_probs=19.4
Q ss_pred hCCCHHHHHHHHHHHHhcCCCCCHHhHH
Q 029406 83 RNKKVVEAKQVWEDLKREEVLFDQHTFG 110 (194)
Q Consensus 83 ~~g~~~~a~~l~~~m~~~g~~p~~~ty~ 110 (194)
-.|+..+|.++++.+...|+.|-...|.
T Consensus 9 L~G~~~ra~riL~~L~~Eg~ep~~lLw~ 36 (125)
T PF14840_consen 9 LAGDAKRALRILQGLQAEGVEPPILLWA 36 (125)
T ss_dssp HTT-HHHHHHHHHHHHHTT--HHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCccHHHHHHH
Confidence 3678888888888888888888766553
No 405
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=29.09 E-value=1e+02 Score=19.87 Aligned_cols=31 Identities=6% Similarity=-0.016 Sum_probs=23.5
Q ss_pred CCCCHHhHHHHHHHHhcCCChHHHHHHHHHh
Q 029406 102 VLFDQHTFGDIIRAFSDSGLPSEAMFIYNEM 132 (194)
Q Consensus 102 ~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M 132 (194)
+.|+...||..|+.....+.+.-|..++..-
T Consensus 12 F~pt~~~yn~yiN~~~~~nkVaPa~n~L~r~ 42 (83)
T PF10963_consen 12 FNPTPTAYNKYINEMAMDNKVAPAHNYLMRI 42 (83)
T ss_pred eccCHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 6788888888888888888777776655543
No 406
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=29.02 E-value=3.3e+02 Score=26.19 Aligned_cols=60 Identities=13% Similarity=0.128 Sum_probs=44.3
Q ss_pred hcCCHhHHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHH
Q 029406 47 RQDQVFLCMKLYDVVRKEIWYRPDMF-FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQH 107 (194)
Q Consensus 47 ~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 107 (194)
....+.++..+|..|. ..|+.+... .|-..=..+.+.+.+.+|..+|..=.+....|-..
T Consensus 90 ~~e~~~d~~d~f~~m~-~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~r 150 (974)
T KOG1166|consen 90 LREELQDAEDFFSYLE-NKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLER 150 (974)
T ss_pred HHHHHhhHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 4567788999999998 688887754 44455566677788999988888777666666443
No 407
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=29.02 E-value=2.8e+02 Score=27.17 Aligned_cols=21 Identities=19% Similarity=0.025 Sum_probs=9.7
Q ss_pred HHHHHHhCCCHHHHHHHHHHH
Q 029406 77 MLMMLARNKKVVEAKQVWEDL 97 (194)
Q Consensus 77 li~~~~~~g~~~~a~~l~~~m 97 (194)
.|.+|-.+|++++|+.+..+|
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql 991 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQL 991 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhh
Confidence 344444444444444444444
No 408
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=29.01 E-value=1.6e+02 Score=18.83 Aligned_cols=45 Identities=16% Similarity=0.014 Sum_probs=22.2
Q ss_pred HhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCc
Q 029406 107 HTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 107 ~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~ 156 (194)
.....|-......|+.+.|..+++.+. .| ..-|..++.++...|.
T Consensus 33 ~d~e~I~a~~~~~G~~~aa~~Ll~~L~-r~----~~Wf~~Fl~AL~~~~~ 77 (84)
T cd08789 33 EDKERIQAAENNSGNIKAAWTLLDTLV-RR----DNWLEPFLDALRECGL 77 (84)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh-cc----CChHHHHHHHHHHcCC
Confidence 344444444445555566666665555 21 2334455555554444
No 409
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=28.86 E-value=1.6e+02 Score=18.70 Aligned_cols=55 Identities=11% Similarity=0.187 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhh
Q 029406 89 EAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151 (194)
Q Consensus 89 ~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~ 151 (194)
.+..+++.+...|+- +...|..+-. +.-..++|..+++....+| ..+|..+.+++
T Consensus 16 ~v~~ilD~L~~~~Vi-t~e~~~~I~a---~~T~~~kar~Lld~l~~kG----~~A~~~F~~~L 70 (82)
T cd08330 16 NVDPILDKLHGKKVI-TQEQYSEVRA---EKTNQEKMRKLFSFVRSWG----ASCKDIFYQIL 70 (82)
T ss_pred hHHHHHHHHHHCCCC-CHHHHHHHHc---CCCcHHHHHHHHHHHHccC----HHHHHHHHHHH
Confidence 456677777777754 5556666554 4566778888888777776 34444444444
No 410
>PRK14135 recX recombination regulator RecX; Provisional
Probab=28.45 E-value=2.9e+02 Score=21.57 Aligned_cols=62 Identities=15% Similarity=0.111 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhC
Q 029406 88 VEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152 (194)
Q Consensus 88 ~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~ 152 (194)
+.+..++..+.+.|..=|..--...+..+.+.+. ..-..+-..+..+|+.++.. ...+..+.
T Consensus 89 ~~Ie~vl~~l~~~~~ldD~~~a~~~~~~~~~~~~-~g~~~I~~kL~~kGi~~~~I--e~~l~~l~ 150 (263)
T PRK14135 89 EIISEVIDKLKEEKYIDDKEYAESYVRTNINTGD-KGPRVIKQKLLQKGIEDEII--EEALSEYT 150 (263)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHcCCCHHHH--HHHHHhCC
Confidence 3344556666666654444444444444444332 22235666677777765433 33444443
No 411
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=28.43 E-value=77 Score=27.35 Aligned_cols=60 Identities=20% Similarity=0.146 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChh----hHHHHHHhhCCCCc
Q 029406 84 NKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISL----PFRVILKGLIPYPE 156 (194)
Q Consensus 84 ~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~----ty~~ll~~~~~~g~ 156 (194)
....++|+++-++-...|... .-|-...|-+++.++.++|+.||.. +..-.+++|+-.|-
T Consensus 216 a~~ldeAl~~a~~~~~ag~p~-------------SIgl~GNaaei~~~l~~r~~~pD~vtDQTsaHdp~~GY~P~G~ 279 (561)
T COG2987 216 AETLDEALALAEEATAAGEPI-------------SIGLLGNAAEILPELLRRGIRPDLVTDQTSAHDPLNGYLPVGY 279 (561)
T ss_pred cCCHHHHHHHHHHHHhcCCce-------------EEEEeccHHHHHHHHHHcCCCCceecccccccCcccCcCCCcC
Confidence 345777777777777666442 2345566777888888888887653 34455666776653
No 412
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=27.95 E-value=2.7e+02 Score=21.14 Aligned_cols=58 Identities=10% Similarity=0.013 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMF-FYRDMLMMLARNKKVVEAKQVWE 95 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~l~~ 95 (194)
..++.+|+.|.-.|+|+.|-+.|--+. +.. ..|.. .|+.=+..+.+.+.-....++++
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLi-R~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~ 100 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLI-RCP-EVDIRSLWGIGAEILMRRGEQNSELEFLE 100 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHH-cCC-CCChHhcchHHHHHHHcCCCcchHHHHHH
Confidence 457789999999999999999999997 322 23322 35555555555544433333333
No 413
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=27.35 E-value=3.2e+02 Score=21.79 Aligned_cols=85 Identities=6% Similarity=-0.030 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCC-----------CHHhHHHHHHHHhcC
Q 029406 53 LCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE--VLF-----------DQHTFGDIIRAFSDS 119 (194)
Q Consensus 53 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p-----------~~~ty~~li~~~~~~ 119 (194)
+...++.......|+..+......++..+ .|++.++...++.....+ +.+ .......++.+. ..
T Consensus 188 ~~~~~l~~~~~~~~~~~~~~al~~l~~~~--~gdlr~l~~~l~~~~~~~~~It~~~v~~~~~~~~~~~~i~~l~~ai-~~ 264 (337)
T PRK12402 188 ELVDVLESIAEAEGVDYDDDGLELIAYYA--GGDLRKAILTLQTAALAAGEITMEAAYEALGDVGTDEVIESLLDAA-EA 264 (337)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCCHHHHHHHHHHH-Hc
Confidence 34455555443567777777777777765 688888887777654322 211 122333455544 55
Q ss_pred CChHHHHHHHHHhH-hCCCCCC
Q 029406 120 GLPSEAMFIYNEMR-SSPATPI 140 (194)
Q Consensus 120 g~~~~a~~l~~~M~-~~g~~p~ 140 (194)
|+..+|..++.+|. +.|+.|.
T Consensus 265 ~~~~~a~~~l~~l~~~~g~~~~ 286 (337)
T PRK12402 265 GDFTDARKTLDDLLIDEGLSGG 286 (337)
T ss_pred CCHHHHHHHHHHHHHHcCCCHH
Confidence 78999999999986 6888765
No 414
>PF14518 Haem_oxygenas_2: Iron-containing redox enzyme; PDB: 3BJD_B.
Probab=27.18 E-value=1.8e+02 Score=18.90 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=18.9
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCC
Q 029406 77 MLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGL 121 (194)
Q Consensus 77 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 121 (194)
++..+.....+.++...+--.... ....|..++.++-+.|-
T Consensus 53 ~~~~~~~~~~~~~~lG~~~~~E~~----~~~~~~~~~~~l~r~g~ 93 (106)
T PF14518_consen 53 FLALCLHRSHYPEALGALLATESS----VPQIYRRLIKGLRRLGL 93 (106)
T ss_dssp HHHH--H-SSTHHHHHHHHHHHTH----HHHHHHHHHHHHHHTT-
T ss_pred HHHhcccchhHHHHHHHHHHHhhc----ChHHHHHHHHHHHHcCC
Confidence 333443444556666555533322 33346666666666653
No 415
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=27.08 E-value=4e+02 Score=22.84 Aligned_cols=76 Identities=16% Similarity=0.175 Sum_probs=49.7
Q ss_pred CHHhHHHHHHHHhcC---CChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCchh
Q 029406 105 DQHTFGDIIRAFSDS---GLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180 (194)
Q Consensus 105 ~~~ty~~li~~~~~~---g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~ 180 (194)
+...+--+|+++-|. .+.+.|.-++..|.+.|..|....=..++-+...-|.-......-|...++-....|+|+-
T Consensus 245 ~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIGlAdP~Al~~a~aa~da~~~lG~PE~ 323 (436)
T COG2256 245 DGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIGLADPNALQVAVAALDAVERLGSPEA 323 (436)
T ss_pred CcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHHhCCchH
Confidence 444555566666544 6888999999999999988888777777777666664333334444444444456666654
No 416
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=26.95 E-value=4.3e+02 Score=23.14 Aligned_cols=110 Identities=15% Similarity=0.051 Sum_probs=69.8
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCC------------C
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE--EVLF------------D 105 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g~~p------------~ 105 (194)
.+|++|..++ ++.........+.+.|-.|-...|-.+. +-+.+.+.+|.+.+.-...+ +..| |
T Consensus 51 rilnAffl~n-ld~Me~~l~~l~~~~~~s~~l~LF~~L~--~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~d 127 (549)
T PF07079_consen 51 RILNAFFLNN-LDLMEKQLMELRQQFGKSAYLPLFKALV--AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSD 127 (549)
T ss_pred HHHHHHHHhh-HHHHHHHHHHHHHhcCCchHHHHHHHHH--HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhH
Confidence 5788887654 5666666666653444222222222221 23678899998888777654 3333 2
Q ss_pred HHhHHHHHHHHhcCCChHHHHHHHHHhHhC----CCCCChhhHHHHHHhhC
Q 029406 106 QHTFGDIIRAFSDSGLPSEAMFIYNEMRSS----PATPISLPFRVILKGLI 152 (194)
Q Consensus 106 ~~ty~~li~~~~~~g~~~~a~~l~~~M~~~----g~~p~~~ty~~ll~~~~ 152 (194)
-.-=+..+.++...|++.++..+++.|..+ .+..+..+|+-++-.++
T Consensus 128 f~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmls 178 (549)
T PF07079_consen 128 FFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLS 178 (549)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHh
Confidence 223356778889999999999999988654 34477788887554444
No 417
>PRK11906 transcriptional regulator; Provisional
Probab=26.53 E-value=4.3e+02 Score=22.96 Aligned_cols=85 Identities=11% Similarity=0.110 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCCCHHhHHHHHHHHhcCCChHHHHHHHHH-hHhCCCCCChhhHHHH
Q 029406 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREE-VLFDQHTFGDIIRAFSDSGLPSEAMFIYNE-MRSSPATPISLPFRVI 147 (194)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~ty~~li~~~~~~g~~~~a~~l~~~-M~~~g~~p~~~ty~~l 147 (194)
|...-..+=.+..-.++++.|..+|++....+ -.++...|..++ ++-+|+.++|...++. ++-+...........+
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~--~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~ 414 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALV--HFHNEKIEEARICIDKSLQLEPRRRKAVVIKEC 414 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHH--HHHcCCHHHHHHHHHHHhccCchhhHHHHHHHH
Confidence 34443333333455566999999999876553 222333344444 4467889999998888 5555555566777777
Q ss_pred HHhhCCCCc
Q 029406 148 LKGLIPYPE 156 (194)
Q Consensus 148 l~~~~~~g~ 156 (194)
++.|+.++-
T Consensus 415 ~~~~~~~~~ 423 (458)
T PRK11906 415 VDMYVPNPL 423 (458)
T ss_pred HHHHcCCch
Confidence 888887774
No 418
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=26.27 E-value=3.4e+02 Score=21.63 Aligned_cols=41 Identities=15% Similarity=0.219 Sum_probs=27.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC-CHHhHHHHHH
Q 029406 74 YRDMLMMLARNKKVVEAKQVWEDLKREEVLF-DQHTFGDIIR 114 (194)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~ 114 (194)
...++....+.+++++-..+++.|..-.+.| ....|+.+|+
T Consensus 219 ~~~~l~~l~~~~~~~~k~~~~~~~~~l~~n~~k~~~~~~~~~ 260 (261)
T PRK05818 219 IAQLLNLLIPTVDPEKKSKLYNLLSNLKYNLPKTALFANIIS 260 (261)
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHhcCCCCcHHHHHHHHhc
Confidence 3445555558888888889998886666544 3455666664
No 419
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=26.25 E-value=1.8e+02 Score=18.61 Aligned_cols=71 Identities=14% Similarity=0.068 Sum_probs=36.1
Q ss_pred HhcCCHhHHHH----HHHHHHhhcCCCCC--HHHHHH--HHHHHHhCCCHHHHHHHHHHHHhcC-CCCCHHhHHHHHHHH
Q 029406 46 QRQDQVFLCMK----LYDVVRKEIWYRPD--MFFYRD--MLMMLARNKKVVEAKQVWEDLKREE-VLFDQHTFGDIIRAF 116 (194)
Q Consensus 46 ~~~~~~~~a~~----~~~~m~~~~~~~p~--~~~~~~--li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~ty~~li~~~ 116 (194)
.+.|++..|.+ .|+... ..+..+. ...+.. +-......|++++|...+++..+-- -.-|..+.+..+.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~-~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~ 87 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAK-QSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWL 87 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 36777877744 444444 2332221 222222 2334455688888888887766421 122555554444444
Q ss_pred h
Q 029406 117 S 117 (194)
Q Consensus 117 ~ 117 (194)
+
T Consensus 88 ~ 88 (94)
T PF12862_consen 88 A 88 (94)
T ss_pred H
Confidence 3
No 420
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.09 E-value=3.7e+02 Score=22.05 Aligned_cols=72 Identities=7% Similarity=-0.009 Sum_probs=45.2
Q ss_pred hcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--------------CCCCCHHhHHHHHHHHhcCCChHHHHHHH
Q 029406 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE--------------EVLFDQHTFGDIIRAFSDSGLPSEAMFIY 129 (194)
Q Consensus 64 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--------------g~~p~~~ty~~li~~~~~~g~~~~a~~l~ 129 (194)
..|+..+......++... .|+...+...++++... +..++...|. ++++. ..|+...+..++
T Consensus 182 ~~g~~i~~~al~~l~~~~--~gdlr~~~~~lekl~~y~~~~it~~~v~~~~~~~~~~~if~-l~~ai-~~~~~~~a~~~~ 257 (367)
T PRK14970 182 KEGIKFEDDALHIIAQKA--DGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYDTYIN-VTDLI-LENKIPELLLAF 257 (367)
T ss_pred HcCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCCHHHHHH-HHHHH-HcCCHHHHHHHH
Confidence 567766666666666542 36788888777776521 1111222233 55554 347889999999
Q ss_pred HHhHhCCCCC
Q 029406 130 NEMRSSPATP 139 (194)
Q Consensus 130 ~~M~~~g~~p 139 (194)
+.+...|..|
T Consensus 258 ~~l~~~~~~~ 267 (367)
T PRK14970 258 NEILRKGFDG 267 (367)
T ss_pred HHHHHcCCCH
Confidence 9988888766
No 421
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=25.65 E-value=4.2e+02 Score=22.58 Aligned_cols=97 Identities=14% Similarity=0.079 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHH------hhcCCCC-----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh--cC-
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVR------KEIWYRP-----DMFFYRDMLMMLARNKKVVEAKQVWEDLKR--EE- 101 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~------~~~~~~p-----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~g- 101 (194)
...+.+|..+....++.+-++...... ...|..| .-++...|++..|-.|++..|+++.+.+.- .+
T Consensus 76 ~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l 155 (404)
T PF10255_consen 76 YSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGL 155 (404)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchh
Confidence 445567778877777776665554421 0112222 123556688889999999999999876642 11
Q ss_pred ---CCC-CHHhHHHHHHHHhcCCChHHHHHHHHHh
Q 029406 102 ---VLF-DQHTFGDIIRAFSDSGLPSEAMFIYNEM 132 (194)
Q Consensus 102 ---~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~M 132 (194)
+.+ ...+|--+=-+|.-.+++.+|.++|...
T Consensus 156 ~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 156 YTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred hccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 3345666677788889999999888864
No 422
>TIGR01914 cas_Csa4 CRISPR-associated protein, Csa4 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein that tends to be found near CRISPR repeats. The species range for this species, so far, is exclusively archaeal. It is found so far in only four different species, and includes two tandem genes in Pyrococcus furiosus DSM 3638. This subfamily is found in a CRISPR/Cas locus we designate APERN, so the family is designated Csa4, for CRISPR/Cas Subtype Protein 4.
Probab=25.19 E-value=4e+02 Score=22.14 Aligned_cols=73 Identities=12% Similarity=0.039 Sum_probs=46.0
Q ss_pred HHHHHHHH--hCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhC
Q 029406 75 RDMLMMLA--RNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152 (194)
Q Consensus 75 ~~li~~~~--~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~ 152 (194)
+.+|+... +..++-...++++.+.+. |...-.+++.+ .-.|+.+.-+..++.|...|+.++...-..|...++
T Consensus 278 ~~LmdfI~~lK~r~~y~~~kfvd~L~r~----d~e~~~~L~~a-i~~~~~~~~Ysa~R~~k~~g~~~~~~~v~~lae~l~ 352 (354)
T TIGR01914 278 GVLMDFIAYLKARDFYSWPKFVDFLARR----DPEISLQLTDA-ILNGDEEAFYTALRELKKSGVRYDPEQVDALAEILA 352 (354)
T ss_pred hHHHHHHHHHhhhhhcchHHHHHHHhcc----ChHHHHHHHHH-HHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Confidence 34444433 333444566666666555 23345555555 345666777888888888888888888888777665
No 423
>PF15469 Sec5: Exocyst complex component Sec5
Probab=25.16 E-value=2.8e+02 Score=20.27 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=21.9
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRK 63 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 63 (194)
++-.-|..+.+.|+++.++.-|...+.
T Consensus 88 ~LP~~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 88 NLPSNLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HhHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 344668888899999999999988873
No 424
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=25.04 E-value=2e+02 Score=24.87 Aligned_cols=43 Identities=12% Similarity=0.386 Sum_probs=21.8
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 029406 58 YDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE 101 (194)
Q Consensus 58 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g 101 (194)
|.+++ ...++||.+.+.-+...|.+.=-.+-|-+||+-....|
T Consensus 462 ~~Hl~-kl~l~PDiylidwiftlyskslpldlacRIwDvy~rdg 504 (586)
T KOG2223|consen 462 FTHLK-KLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDG 504 (586)
T ss_pred HHHHH-hccCCCchhhHHHHHHHHhccCChHHhhhhhheeeecc
Confidence 33444 34455555555555555555555555555555444333
No 425
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=24.90 E-value=6.5e+02 Score=26.90 Aligned_cols=105 Identities=11% Similarity=-0.016 Sum_probs=66.4
Q ss_pred HHhcCCHhHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChH
Q 029406 45 FQRQDQVFLCMKLYDVVRK-EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123 (194)
Q Consensus 45 ~~~~~~~~~a~~~~~~m~~-~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 123 (194)
-.+++.+..|.-.++.-+. ..........|-.+...|+.-++++.+..+...-. -.|+ ...-|.-....|+++
T Consensus 1393 Sfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~---a~~s---l~~qil~~e~~g~~~ 1466 (2382)
T KOG0890|consen 1393 SFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF---ADPS---LYQQILEHEASGNWA 1466 (2382)
T ss_pred HHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh---cCcc---HHHHHHHHHhhccHH
Confidence 3457888999988888320 11122345566666679999999988877766411 1222 334455567889999
Q ss_pred HHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCc
Q 029406 124 EAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 124 ~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~ 156 (194)
.|..+|+.+...+ ++...+|+=+++..-..|+
T Consensus 1467 da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~ 1498 (2382)
T KOG0890|consen 1467 DAAACYERLIQKD-PDKEKHHSGVLKSMLAIQH 1498 (2382)
T ss_pred HHHHHHHHhhcCC-CccccchhhHHHhhhcccc
Confidence 9999999998663 2335566655544444444
No 426
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=24.89 E-value=5.3e+02 Score=23.68 Aligned_cols=69 Identities=16% Similarity=0.159 Sum_probs=47.2
Q ss_pred cCCCCCHHHHHHHHHHHHhCCC----HHHHHHHHHHHHh----cCCCCC---HHhHHHHHHHHhcCCChHHHHHHHHHhH
Q 029406 65 IWYRPDMFFYRDMLMMLARNKK----VVEAKQVWEDLKR----EEVLFD---QHTFGDIIRAFSDSGLPSEAMFIYNEMR 133 (194)
Q Consensus 65 ~~~~p~~~~~~~li~~~~~~g~----~~~a~~l~~~m~~----~g~~p~---~~ty~~li~~~~~~g~~~~a~~l~~~M~ 133 (194)
.|++.|+..|-.|+.++....+ .+++.++.+-++. -|+.+. ...-.+++.-|+..|+.+-.......+.
T Consensus 211 dgyplN~~LYe~LL~~~FD~~de~~vidE~dEvlellK~tW~~LGIt~~lHn~cf~WVlF~qyv~tge~~LL~~a~~~L~ 290 (677)
T PF05664_consen 211 DGYPLNVRLYEKLLFSVFDILDEGQVIDEVDEVLELLKKTWSILGITQTLHNVCFAWVLFRQYVATGEPDLLKAAIQQLQ 290 (677)
T ss_pred cCCCccHHHHHHHHHHHhcccccchHHhhHHHHHHHHHHHhHHhCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5788899999999998877433 5777777777764 355542 2334577888889997665555555543
No 427
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=24.84 E-value=1.5e+02 Score=16.98 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=12.4
Q ss_pred chHHHHHHHHHHHhcCCchhHHHHH
Q 029406 2 SKESLMVAKELKRLQSHPVRFDRFI 26 (194)
Q Consensus 2 ~~~a~~vi~~l~~~~~~~~~~~~~~ 26 (194)
+++++.+.=.|....-+|+.+...+
T Consensus 20 d~etL~ici~L~e~GVnPeaLA~vI 44 (48)
T PF12554_consen 20 DRETLSICIELCENGVNPEALAAVI 44 (48)
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 3455555555555555555444433
No 428
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=24.62 E-value=1.3e+02 Score=20.24 Aligned_cols=90 Identities=11% Similarity=0.024 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHH
Q 029406 52 FLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYN 130 (194)
Q Consensus 52 ~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~ 130 (194)
..|.+.+..++..-|+.| |+.+=-++-..+.....+..+. .-...|++.|-.||. |.++..+..+=
T Consensus 5 ~~a~~~L~~Lk~~Tgi~~~NilcR~A~~~SL~~~~~~~~~~----~~~d~~~E~~~~T~~---------Ge~~~i~~alL 71 (105)
T TIGR03184 5 QTAKDQLRRLKRRTGLTPWNILCRWAFCLSLEEGSTPGVAD----IKLDGNVEIDWYTFA---------GEYGDIYLALL 71 (105)
T ss_pred HHHHHHHHHHhcccCCCcchHHHHHHHHHHHhcCCCCCccc----cCCCCCeEEEeeeec---------CchHHHHHHHH
Confidence 356777777776778888 6655555444444333222110 000123344444443 66666555443
Q ss_pred HhH--hCCCCCChhhHHHHHHhhCCC
Q 029406 131 EMR--SSPATPISLPFRVILKGLIPY 154 (194)
Q Consensus 131 ~M~--~~g~~p~~~ty~~ll~~~~~~ 154 (194)
.++ ..|..+|...+.-.+++....
T Consensus 72 kq~~~~~~~~~d~e~l~~~~~lHl~r 97 (105)
T TIGR03184 72 KQRCVADGPELDDESLAKALNLHVHR 97 (105)
T ss_pred HHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 333 445556666666666665533
No 429
>PRK09462 fur ferric uptake regulator; Provisional
Probab=24.60 E-value=2.6e+02 Score=19.71 Aligned_cols=60 Identities=15% Similarity=0.196 Sum_probs=40.9
Q ss_pred hcCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHH
Q 029406 64 EIWYRPDMFFYRDMLMMLARN-KKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSE 124 (194)
Q Consensus 64 ~~~~~p~~~~~~~li~~~~~~-g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 124 (194)
..|++++..= ..++..+... +..-.|.+|++.+.+.+...+..|.--.|..+...|-+..
T Consensus 10 ~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~~ 70 (148)
T PRK09462 10 KAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR 70 (148)
T ss_pred HcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 5677655433 3445555543 4567889999999888877777777777777788776643
No 430
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=24.35 E-value=6.7e+02 Score=24.45 Aligned_cols=43 Identities=16% Similarity=0.036 Sum_probs=26.7
Q ss_pred cCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHH
Q 029406 48 QDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQV 93 (194)
Q Consensus 48 ~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l 93 (194)
..+...|.+.|+.-.+ +.| |...+..+-+.|++...++.|..+
T Consensus 505 ~~Dm~RA~kCf~KAFe---LDatdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 505 SDDMKRAKKCFDKAFE---LDATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred HHHHHHHHHHHHHHhc---CCchhhhhHHHHHHHhhccccHHHHHHH
Confidence 3455566666666642 333 455666677777777777777766
No 431
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=23.99 E-value=2.6e+02 Score=19.48 Aligned_cols=43 Identities=12% Similarity=0.173 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHhhcCCCCCHHH-HHHHHHHHHhCCCHHHHHHHHH
Q 029406 52 FLCMKLYDVVRKEIWYRPDMFF-YRDMLMMLARNKKVVEAKQVWE 95 (194)
Q Consensus 52 ~~a~~~~~~m~~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~l~~ 95 (194)
+++.++|..|. ..+|-..... |-.-=..+-..|++.+|..+|.
T Consensus 80 ~dp~~if~~L~-~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLY-SKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHH-HCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55788999999 7888887554 4455555666899999999886
No 432
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=23.84 E-value=1.1e+02 Score=26.82 Aligned_cols=57 Identities=25% Similarity=0.189 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChh----hHHHHHHhhCCCC
Q 029406 86 KVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISL----PFRVILKGLIPYP 155 (194)
Q Consensus 86 ~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~----ty~~ll~~~~~~g 155 (194)
+.++|+.+.++.++.+-.. .-|-+..+.++|.++.++|+.||.. +....+++|+-.|
T Consensus 209 ~ldeal~~~~~a~~~~~~~-------------SIg~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g 269 (545)
T TIGR01228 209 SLDEALARAEEAKAEGKPI-------------SIGLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEG 269 (545)
T ss_pred CHHHHHHHHHHHHHcCCce-------------EEEeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCC
Confidence 4566666666666655332 2345566777888888888888653 3444556677666
No 433
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=23.63 E-value=3.4e+02 Score=20.72 Aligned_cols=88 Identities=14% Similarity=0.018 Sum_probs=51.2
Q ss_pred HhcCCHhHHHHHHHHHHh-hcCCCCCHHHHHHHHH-HHHhCCC--HHHHHHHHHHHHhcCCCCCHH----hHHHHHHHHh
Q 029406 46 QRQDQVFLCMKLYDVVRK-EIWYRPDMFFYRDMLM-MLARNKK--VVEAKQVWEDLKREEVLFDQH----TFGDIIRAFS 117 (194)
Q Consensus 46 ~~~~~~~~a~~~~~~m~~-~~~~~p~~~~~~~li~-~~~~~g~--~~~a~~l~~~m~~~g~~p~~~----ty~~li~~~~ 117 (194)
...|+++.|.+.++.+-+ -..++.-...|..+.. ++|..+. +-+|.-++......+ .|+.. .+-..|.|.+
T Consensus 40 ~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~-~ps~~EL~V~~~~YilGl~ 118 (204)
T COG2178 40 LHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGR-LPSPEELGVPPIAYILGLA 118 (204)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCC-CCCHHHcCCCHHHHHHHHH
Confidence 355677777777776631 1122234556666666 6666654 566777776665443 33332 2333444443
Q ss_pred --------------cCCChHHHHHHHHHhHh
Q 029406 118 --------------DSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 118 --------------~~g~~~~a~~l~~~M~~ 134 (194)
+.|+++.|.+.++-|.+
T Consensus 119 D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 119 DAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45788888888888864
No 434
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.45 E-value=1.5e+02 Score=26.39 Aligned_cols=68 Identities=16% Similarity=0.139 Sum_probs=38.9
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-----CCCCHHhHH---HHHHHHhcCCChHHHHHHH
Q 029406 58 YDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE-----VLFDQHTFG---DIIRAFSDSGLPSEAMFIY 129 (194)
Q Consensus 58 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-----~~p~~~ty~---~li~~~~~~g~~~~a~~l~ 129 (194)
++.+- ..|++||..||++ ..+++.+++..+|.+.| -.|..++=. .=+..-++.+.+++-.++|
T Consensus 256 leDl~-~LgIkpd~~TyTS--------DyF~~i~dycv~likeGKAYvDDTp~E~Mr~ER~~gv~Sk~R~~~vEenl~iw 326 (712)
T KOG1147|consen 256 LEDLS-LLGIKPDRVTYTS--------DYFDEIMDYCVKLIKEGKAYVDDTPTEQMRDEREQGVESKCRSNSVEENLRIW 326 (712)
T ss_pred HHHHH-HhCcCcceeeech--------hhHHHHHHHHHHHHhcCcccccCCcHHHHHHHHhccccccccCCCHHHHHHHH
Confidence 33444 6799999998875 22333333333444333 112211111 1233457888999999999
Q ss_pred HHhHh
Q 029406 130 NEMRS 134 (194)
Q Consensus 130 ~~M~~ 134 (194)
++|.+
T Consensus 327 ~EM~k 331 (712)
T KOG1147|consen 327 EEMKK 331 (712)
T ss_pred HHHhc
Confidence 99974
No 435
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=23.44 E-value=1.6e+02 Score=17.00 Aligned_cols=21 Identities=10% Similarity=-0.047 Sum_probs=11.1
Q ss_pred HHHhCCCHHHHHHHHHHHHhc
Q 029406 80 MLARNKKVVEAKQVWEDLKRE 100 (194)
Q Consensus 80 ~~~~~g~~~~a~~l~~~m~~~ 100 (194)
++.+.|++++|.+..+.+.+.
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhh
Confidence 344566666666666555543
No 436
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.31 E-value=5e+02 Score=22.64 Aligned_cols=65 Identities=14% Similarity=0.249 Sum_probs=39.9
Q ss_pred HHHHHHHhc-CCHhH----HHHHHHHHHhhcCCC-CCHHHHH---HHHHHHH----h-CCCHHHHHHHHHHHHhcCCCC
Q 029406 40 SVLAEFQRQ-DQVFL----CMKLYDVVRKEIWYR-PDMFFYR---DMLMMLA----R-NKKVVEAKQVWEDLKREEVLF 104 (194)
Q Consensus 40 ~ll~~~~~~-~~~~~----a~~~~~~m~~~~~~~-p~~~~~~---~li~~~~----~-~g~~~~a~~l~~~m~~~g~~p 104 (194)
.||+.|.++ |..-- ..+|+++|.+..... ++...=+ .||..|. . .+.+.+..++++..+..|+++
T Consensus 60 tlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~~~~~~~~~~~~y~~l~~~G~~F 138 (470)
T KOG1087|consen 60 TLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCGPDGYLPDYYQIYDELRRKGVEF 138 (470)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccCCCCcchhHHHHHHHHHHcCCcC
Confidence 377777773 54322 467788886555555 4444333 3444433 3 466888888888888888654
No 437
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=23.31 E-value=3.4e+02 Score=22.95 Aligned_cols=52 Identities=19% Similarity=0.079 Sum_probs=32.1
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC------CChHHHHHHHHH
Q 029406 80 MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS------GLPSEAMFIYNE 131 (194)
Q Consensus 80 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~------g~~~~a~~l~~~ 131 (194)
.+.+.+++..|.++|+++......|....+-.++..+|+. -+++.|.+.++.
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3445677888888888888776555555544444444433 466677776663
No 438
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=23.26 E-value=1.3e+02 Score=22.14 Aligned_cols=96 Identities=10% Similarity=0.084 Sum_probs=56.2
Q ss_pred hHHHHHHHHH-hcCCHhHHHHHHHHHHh---hcCCCCCHHHHHH---HHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhH
Q 029406 37 DLVSVLAEFQ-RQDQVFLCMKLYDVVRK---EIWYRPDMFFYRD---MLMMLARNKKVVEAKQVWEDLKREEVLFDQHTF 109 (194)
Q Consensus 37 ~~~~ll~~~~-~~~~~~~a~~~~~~m~~---~~~~~p~~~~~~~---li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty 109 (194)
.+..+...+. -..+-..|...|..+.. ..-+.++...... .+..+.+... -+++..+.+.|+.|....+
T Consensus 92 G~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~----P~l~~~l~~~~~~~~~~~~ 167 (214)
T PF00566_consen 92 GMNDIAAPLLLVFLDEEEAFWCFVQLLNYYLPDFFQPNFKGLQKILKIFEQLLKKHD----PELYNHLKQLGVDPEIYAF 167 (214)
T ss_dssp THHHHHHHHHHTCSHHHHHHHHHHHHHTHHGGGGTSTTHHHHHHHHHHHHHHHHHHT----HHHHHHHHHTT-GGHHHHH
T ss_pred hhhhhhhhhhhhcccccchhccccchhcccccccccccccccchhhhhHHHHHHhhh----hhhhhhhhhhhhhhhhhhh
Confidence 3444444444 33444557777777641 1233344333222 3333332222 2455666778999999999
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhHhCCC
Q 029406 110 GDIIRAFSDSGLPSEAMFIYNEMRSSPA 137 (194)
Q Consensus 110 ~~li~~~~~~g~~~~a~~l~~~M~~~g~ 137 (194)
.-++..+++.=..+.+..+|+-+. .|.
T Consensus 168 ~w~~~lF~~~l~~~~~~~lwD~l~-~g~ 194 (214)
T PF00566_consen 168 PWFLTLFSRSLPFDDVLRLWDFLL-EGY 194 (214)
T ss_dssp HHHHTTTTTTS-HHHHHHHHHHHH-HCT
T ss_pred hhhHhhcCCcCCHHHHHHHHHHHH-cCC
Confidence 999999998888899999999444 444
No 439
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=23.26 E-value=3.9e+02 Score=22.57 Aligned_cols=54 Identities=7% Similarity=-0.008 Sum_probs=40.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh------CCCHHHHHHHHH
Q 029406 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLAR------NKKVVEAKQVWE 95 (194)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~------~g~~~~a~~l~~ 95 (194)
....+...+++..|.++|+.+. +....|....+...+..+|+ .-++++|.+.++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~-~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLL-RRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHH-hcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 3445667899999999999999 67766777666666665555 467888888887
No 440
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.13 E-value=5.3e+02 Score=22.83 Aligned_cols=53 Identities=15% Similarity=0.212 Sum_probs=46.6
Q ss_pred CCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccc
Q 029406 119 SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~ 171 (194)
.-+.+.+....-+|...|+..++.|...++..++++++.+++..++...++..
T Consensus 311 ~l~~k~~~~~~~dll~aGvDTTs~tl~~~Ly~LarnP~~Q~~L~~Ei~~~~p~ 363 (519)
T KOG0159|consen 311 ELSRKDAKANVMDLLAAGVDTTSNTLLWALYELARNPEVQQRLREEILAVLPS 363 (519)
T ss_pred cCCHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcChHHHHHHHHHHHhhCCC
Confidence 46778888899999999999999999999999999999888888887777764
No 441
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=23.06 E-value=2.6e+02 Score=19.19 Aligned_cols=85 Identities=13% Similarity=0.068 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHH
Q 029406 84 NKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKD 163 (194)
Q Consensus 84 ~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~ 163 (194)
....++|..|.+.+...+.. ...+--.-+..+.+.|++..| +..- .....||...|-+|- -.+.|. ..
T Consensus 19 ~HcH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~A--Ll~~--~~~~~pdL~p~~AL~--a~klGL-----~~ 86 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEA--LLLP--QCHCYPDLEPWAALC--AWKLGL-----AS 86 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHH--HHHH--TTS--GGGHHHHHHH--HHHCT------HH
T ss_pred hHHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHH--HHhc--ccCCCccHHHHHHHH--HHhhcc-----HH
Confidence 45689999999999888753 333333445667889999998 2222 223468998888874 346676 66
Q ss_pred HHhhhcccccccCCchh
Q 029406 164 DFLELFPDMIVYDPPED 180 (194)
Q Consensus 164 ~a~~~~~~m~~~~~~~~ 180 (194)
.+...+..+...|-|..
T Consensus 87 ~~e~~l~rla~~g~~~~ 103 (116)
T PF09477_consen 87 ALESRLTRLASSGSPEL 103 (116)
T ss_dssp HHHHHHHHHCT-SSHHH
T ss_pred HHHHHHHHHHhCCCHHH
Confidence 77777776655555543
No 442
>PRK05414 urocanate hydratase; Provisional
Probab=22.98 E-value=1.1e+02 Score=26.86 Aligned_cols=58 Identities=21% Similarity=0.155 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChh----hHHHHHHhhCCCCc
Q 029406 86 KVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISL----PFRVILKGLIPYPE 156 (194)
Q Consensus 86 ~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~----ty~~ll~~~~~~g~ 156 (194)
+.++|+.+.++.++.+-.. .-|-+..+.++|.++.++|+.||.. +....+++|+-.|-
T Consensus 218 ~Ldeal~~~~~a~~~~~~~-------------SIg~~GNaadv~~~l~~~~i~pDlvtDQTSaHdp~~GY~P~G~ 279 (556)
T PRK05414 218 DLDEALALAEEAKAAGEPL-------------SIGLLGNAADVLPELVRRGIRPDLVTDQTSAHDPLNGYLPVGW 279 (556)
T ss_pred CHHHHHHHHHHHHHcCCce-------------EEEEeccHHHHHHHHHHcCCCCCccCcCccccCcccccCCCCC
Confidence 4566666666666655331 2355567777888888888888753 33344457777763
No 443
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=22.91 E-value=5e+02 Score=22.45 Aligned_cols=84 Identities=11% Similarity=-0.005 Sum_probs=54.7
Q ss_pred HHhcCCHhHHHHHHHHHHh--hcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHH-hHHHHH--HHHhcC
Q 029406 45 FQRQDQVFLCMKLYDVVRK--EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQH-TFGDII--RAFSDS 119 (194)
Q Consensus 45 ~~~~~~~~~a~~~~~~m~~--~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~-ty~~li--~~~~~~ 119 (194)
..++|.+..|.+.|.+-.. .....|+...|.-.=.+..+.|+.++|+.-.++...- |.. ..--+. .++.-.
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLAL 334 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHH
Confidence 3578899999999988852 3355567777777777888899999998877665543 322 122222 233334
Q ss_pred CChHHHHHHHHHh
Q 029406 120 GLPSEAMFIYNEM 132 (194)
Q Consensus 120 g~~~~a~~l~~~M 132 (194)
+.++.|.+-|+..
T Consensus 335 e~~e~AV~d~~~a 347 (486)
T KOG0550|consen 335 EKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHH
Confidence 6677776666654
No 444
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=22.64 E-value=3e+02 Score=20.07 Aligned_cols=101 Identities=14% Similarity=0.069 Sum_probs=60.7
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC----CCCCH---HhHHHHHHHHhcCCChHHHHHHHHHhHh-CCC
Q 029406 66 WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE----VLFDQ---HTFGDIIRAFSDSGLPSEAMFIYNEMRS-SPA 137 (194)
Q Consensus 66 ~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g----~~p~~---~ty~~li~~~~~~g~~~~a~~l~~~M~~-~g~ 137 (194)
|+.+......+++-..+ .+-.+|..+|..+.... +.++. ..+..++..+.+..+. +++..+.+ .|+
T Consensus 90 gY~QGm~~i~~~ll~~~--~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p----~l~~~l~~~~~i 163 (199)
T smart00164 90 GYCQGMNFLAAPLLLVM--PDEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEYDP----DLYKHLKDKLGI 163 (199)
T ss_pred ceeccHHHHHHHHHHhc--CCHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHCH----HHHHHHHHhcCC
Confidence 44444444444443332 24567777777665432 33442 2333444444444443 45777775 889
Q ss_pred CCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 138 TPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 138 ~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
.|...++.-++..+.+.=. .+.+..+++.+-..|+
T Consensus 164 ~~~~~~~~W~~~lF~~~~~-----~~~~~riwD~~l~eG~ 198 (199)
T smart00164 164 DPSLYALRWFLTLFARELP-----LEIVLRIWDVLFAEGS 198 (199)
T ss_pred CchhHHHHHHHHHHHhhCC-----HHHHHHHHHHHHhcCC
Confidence 9998888888888876555 7777887777665554
No 445
>PF07980 SusD: SusD family; InterPro: IPR012944 This domain occurs in several hypothetical proteins. It also occurs in RagB, Q9ZA59 from SWISSPROT, a protein involved in signalling [] and SusD, Q8A1G2 from SWISSPROT, an outer membrane protein involved in nutrient binding [].; PDB: 3IHV_A 3LEW_A 3JQ1_A 3JQ0_A 3NQP_B 3SNX_A 3L22_A 3OTN_A 3IV0_A 3QNK_C ....
Probab=22.53 E-value=2.8e+02 Score=21.07 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=23.3
Q ss_pred HhHHHHHHHHhcCCChHHHHHHHHHhHhC-CCC
Q 029406 107 HTFGDIIRAFSDSGLPSEAMFIYNEMRSS-PAT 138 (194)
Q Consensus 107 ~ty~~li~~~~~~g~~~~a~~l~~~M~~~-g~~ 138 (194)
.+|-....|+.+.|+...|...+..++++ |..
T Consensus 134 EvyL~~AEA~~~~g~~~~A~~~lN~vR~Rag~~ 166 (266)
T PF07980_consen 134 EVYLIYAEALARLGNTAEALEYLNQVRKRAGLP 166 (266)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcCCC
Confidence 45667777788888888888888887664 444
No 446
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=22.47 E-value=4.2e+02 Score=21.38 Aligned_cols=81 Identities=12% Similarity=0.103 Sum_probs=48.1
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CC----------CCHHhHHHHHHHHhcCCCh
Q 029406 56 KLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE---VL----------FDQHTFGDIIRAFSDSGLP 122 (194)
Q Consensus 56 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g---~~----------p~~~ty~~li~~~~~~g~~ 122 (194)
+......+..|+..+......+.... .|+...+....+++...+ +. ......-.++.+... |+.
T Consensus 183 ~~l~~~~~~~g~~i~~~a~~~l~~~~--~g~~~~a~~~lekl~~~~~~~it~~~v~~~~~~~~~~~i~~l~~ai~~-~~~ 259 (355)
T TIGR02397 183 ERLKKILDKEGIKIEDEALELIARAA--DGSLRDALSLLDQLISFGNGNITYEDVNELLGLVDDEKLIELLEAILN-KDT 259 (355)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHc--CCChHHHHHHHHHHHhhcCCCCCHHHHHHHhCCCCHHHHHHHHHHHHc-CCH
Confidence 33333333456666665555555443 467777777776654422 11 112234445666554 889
Q ss_pred HHHHHHHHHhHhCCCCC
Q 029406 123 SEAMFIYNEMRSSPATP 139 (194)
Q Consensus 123 ~~a~~l~~~M~~~g~~p 139 (194)
..|..+++.+.+.|..|
T Consensus 260 ~~a~~~~~~l~~~~~~~ 276 (355)
T TIGR02397 260 AEALKILDEILESGVDP 276 (355)
T ss_pred HHHHHHHHHHHHcCCCH
Confidence 99999999998887765
No 447
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.14 E-value=6.3e+02 Score=23.34 Aligned_cols=86 Identities=10% Similarity=-0.018 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-------------CCCHHhHHHHHHHHhc
Q 029406 52 FLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEV-------------LFDQHTFGDIIRAFSD 118 (194)
Q Consensus 52 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-------------~p~~~ty~~li~~~~~ 118 (194)
++..+.+....+..|+..+......+... ..|+...|+.++++....|- ..+....-.++.+..+
T Consensus 180 eEI~k~L~~Il~kEgI~id~eAL~~IA~~--S~GdLRdALnLLDQaIayg~g~IT~edV~~lLG~~d~e~IfdLldAI~k 257 (702)
T PRK14960 180 DEITKHLGAILEKEQIAADQDAIWQIAES--AQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLGLIDRTIIYDLILAVHQ 257 (702)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhccCCHHHHHHHHHHHHh
Confidence 33344444444356777666666555554 35888888888877654431 1133345555666554
Q ss_pred CCChHHHHHHHHHhHhCCCCCC
Q 029406 119 SGLPSEAMFIYNEMRSSPATPI 140 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~g~~p~ 140 (194)
++...++.+++++...|..++
T Consensus 258 -~d~~~al~~L~el~~~g~d~~ 278 (702)
T PRK14960 258 -NQREKVSQLLLQFRYQALDVS 278 (702)
T ss_pred -cCHHHHHHHHHHHHHhCCCHH
Confidence 677888888888888877655
No 448
>PHA02875 ankyrin repeat protein; Provisional
Probab=22.07 E-value=2.3e+02 Score=23.51 Aligned_cols=113 Identities=9% Similarity=-0.123 Sum_probs=58.6
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHH--HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHH---hHHHHHH
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMF--FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQH---TFGDIIR 114 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~--~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~---ty~~li~ 114 (194)
..|+..+..|+.+ +.+.+. ..|..|+.. ...+.+...++.|+.+.+..+++ .|...+.. .-.+.+.
T Consensus 37 tpL~~A~~~~~~~----~v~~Ll-~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~ 107 (413)
T PHA02875 37 SPIKLAMKFRDSE----AIKLLM-KHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD----LGKFADDVFYKDGMTPLH 107 (413)
T ss_pred CHHHHHHHcCCHH----HHHHHH-hCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH----cCCcccccccCCCCCHHH
Confidence 4566666777765 344444 455555533 22345566667888877655554 34222111 1123444
Q ss_pred HHhcCCChHHHHHHHHHhHhCCCCCChhh--HHHHHHhhCCCCchHHhHHHHHhhhcc
Q 029406 115 AFSDSGLPSEAMFIYNEMRSSPATPISLP--FRVILKGLIPYPEFREKVKDDFLELFP 170 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~g~~p~~~t--y~~ll~~~~~~g~~~~~~~~~a~~~~~ 170 (194)
..+..|+.+- ++.+.+.|..|+... -.+.+...+..|+ .+.+.-+++
T Consensus 108 ~A~~~~~~~i----v~~Ll~~gad~~~~~~~g~tpLh~A~~~~~-----~~~v~~Ll~ 156 (413)
T PHA02875 108 LATILKKLDI----MKLLIARGADPDIPNTDKFSPLHLAVMMGD-----IKGIELLID 156 (413)
T ss_pred HHHHhCCHHH----HHHHHhCCCCCCCCCCCCCCHHHHHHHcCC-----HHHHHHHHh
Confidence 5556677654 444555666654322 1233444456777 555555554
No 449
>PF14162 YozD: YozD-like protein
Probab=21.93 E-value=1.8e+02 Score=16.92 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=9.4
Q ss_pred HHHHHHHhHhCCCCCCh
Q 029406 125 AMFIYNEMRSSPATPIS 141 (194)
Q Consensus 125 a~~l~~~M~~~g~~p~~ 141 (194)
|.-.|.++.++|+.|+.
T Consensus 14 AefFy~eL~kRGyvP~e 30 (57)
T PF14162_consen 14 AEFFYHELVKRGYVPTE 30 (57)
T ss_pred HHHHHHHHHHccCCCcH
Confidence 33455566666666654
No 450
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=21.85 E-value=2.8e+02 Score=19.11 Aligned_cols=92 Identities=13% Similarity=0.008 Sum_probs=48.3
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHhc
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR-AFSD 118 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~-~~~~ 118 (194)
.....+...+.+..+...+...............+..+-..+...+.+..+...+.........+. ........ .+..
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 142 (291)
T COG0457 64 LLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALGALYE 142 (291)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHHHHH
Confidence 444455555666666666655541112334445555555555566666666666666655433321 11112222 5666
Q ss_pred CCChHHHHHHHHHh
Q 029406 119 SGLPSEAMFIYNEM 132 (194)
Q Consensus 119 ~g~~~~a~~l~~~M 132 (194)
.|+++.+...|...
T Consensus 143 ~~~~~~a~~~~~~~ 156 (291)
T COG0457 143 LGDYEEALELYEKA 156 (291)
T ss_pred cCCHHHHHHHHHHH
Confidence 66666666666665
No 451
>PF07840 FadR_C: FadR C-terminal domain; InterPro: IPR008920 Bacteria regulate membrane fluidity by manipulating the relative levels of saturated and unsaturated fatty acids within the phospholipids of their membrane bilayers. In Escherichia coli, the transcription factor, FadR, functions as a switch that co-ordinately regulates the machinery required for fatty acid beta-oxidation and the expression of a key enzyme in fatty acid biosynthesis. This single repressor controls the transcription of the whole fad regulon []. Binding of fadR is specifically inhibited by long chain fatty acyl-CoA compounds. The crystal structure of FadR reveals a two domain dimeric molecule where the N-terminal winged-helix domain binds DNA (IPR000524 from INTERPRO), and the C-terminal domain binds acyl-CoA []. The binding of acyl-CoA to the C-terminal domain results in a conformational change that affects the DNA binding affinity of the N-terminal domain []. FadR is a member of the GntR family of bacterial transcription regulators. The DNA-binding domain is well conserved for this family, whereas the C-terminal effector-binding domain (IPR011711 from INTERPRO) is more variable, and is consequently used to define the GntR subfamilies []. The FadR group is the largest subgroup, and is characterised by an all-helical C-terminal domain composed of 6 to 7 alpha helices []. This entry represents the C-terminal domain of FadR.; GO: 0000062 fatty-acyl-CoA binding, 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0019217 regulation of fatty acid metabolic process; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A.
Probab=21.80 E-value=3.3e+02 Score=20.00 Aligned_cols=120 Identities=12% Similarity=0.147 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhcCCc-hhHHHHHHHHhhhhc-----------hhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcC--CCC
Q 029406 4 ESLMVAKELKRLQSHP-VRFDRFIKSHVSRLL-----------KSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIW--YRP 69 (194)
Q Consensus 4 ~a~~vi~~l~~~~~~~-~~~~~~~~~~~~~~~-----------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~p 69 (194)
.++.++..|-+++... ..+..-+-+--+.++ +.....++...-+..+-.+|..-||... .++ ...
T Consensus 7 sgLnIL~TL~rld~~~~p~li~~LLsaRt~is~iyir~Avk~np~~~~~~l~~~~~l~d~aeafa~fDy~l-~~~la~~S 85 (164)
T PF07840_consen 7 SGLNILETLARLDHDSPPELIDNLLSARTNISPIYIRYAVKNNPEKVLEILAELDKLEDDAEAFAEFDYQL-FRRLAFAS 85 (164)
T ss_dssp --GGGHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCTTS-SSHHHHHHHHHHH-HHHHHHHT
T ss_pred cChHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHhhhcccCHHHHHHHhHHH-HHHHHHhc
Confidence 4567788888887652 122222222211111 2223344554445555566766666664 222 223
Q ss_pred CHHHHHHHHHH----HHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHh
Q 029406 70 DMFFYRDMLMM----LARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEM 132 (194)
Q Consensus 70 ~~~~~~~li~~----~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M 132 (194)
+-..|..++++ |.+.|.+ .|..=... +....-|..|+.. |..|+.+.+..+.+++
T Consensus 86 ~NpiY~LilNgfk~lY~rvg~~-----YFs~~~aR--~la~~fY~~L~~~-~~~~~~~~v~~~vr~y 144 (164)
T PF07840_consen 86 GNPIYGLILNGFKGLYSRVGRY-----YFSNPEAR--ELALNFYRELLEA-CEKGDYDQVPDVVRQY 144 (164)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHH-----HTTSHHHH--HHHHHHHHHHHHH-HHCT-CCGHHHHHHHH
T ss_pred CCCchhhHHcccHHHHHHHHHH-----HcCChHHH--HHHHHHHHHHHHH-HHhCCHHHHHHHHHHH
Confidence 44455555544 4433321 11110000 0012234444444 5667888887777664
No 452
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=21.51 E-value=4.9e+02 Score=21.81 Aligned_cols=104 Identities=15% Similarity=0.271 Sum_probs=65.9
Q ss_pred HHHHHHHHhhhhchhhHHHHHHHHHh-cCCHhHHHHHHHHHHhh--cCCCCCHHHH--HHHHHHHHhCCCHHHHHHHHHH
Q 029406 22 FDRFIKSHVSRLLKSDLVSVLAEFQR-QDQVFLCMKLYDVVRKE--IWYRPDMFFY--RDMLMMLARNKKVVEAKQVWED 96 (194)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~m~~~--~~~~p~~~~~--~~li~~~~~~g~~~~a~~l~~~ 96 (194)
+..++.+.-.+..+.-..-++-..++ .++-+.|+++.+++.+. .--.|+.+.| +.+.+.+-..|+.+++.++++.
T Consensus 61 Y~NFvsefe~kINplslvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd 140 (380)
T KOG2908|consen 61 YLNFVSEFETKINPLSLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDD 140 (380)
T ss_pred HHHHHHHHhhccChHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 34444555455555555544444444 57899999999999632 1223565555 4566666678999999999998
Q ss_pred HHh-----cCCCCCHH-hHHHHHHHHhcC-CChHHH
Q 029406 97 LKR-----EEVLFDQH-TFGDIIRAFSDS-GLPSEA 125 (194)
Q Consensus 97 m~~-----~g~~p~~~-ty~~li~~~~~~-g~~~~a 125 (194)
.+. -|++|++. .|..+=+-|-+. |++...
T Consensus 141 ~~~~ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 141 LKSMLDSLDGVTSNVHSSFYSLSSQYYKKIGDFASY 176 (380)
T ss_pred HHHHHhcccCCChhhhhhHHHHHHHHHHHHHhHHHH
Confidence 887 67888654 455555555444 444443
No 453
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.49 E-value=3.1e+02 Score=25.99 Aligned_cols=29 Identities=28% Similarity=0.319 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 029406 72 FFYRDMLMMLARNKKVVEAKQVWEDLKRE 100 (194)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 100 (194)
.-|..|+..|...|+.++|+++|.+....
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 35788888899999999999999888653
No 454
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.38 E-value=5.5e+02 Score=22.38 Aligned_cols=74 Identities=7% Similarity=-0.070 Sum_probs=41.0
Q ss_pred hcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-------------CCHHhHHHHHHHHhcCCChHHHHHHHH
Q 029406 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVL-------------FDQHTFGDIIRAFSDSGLPSEAMFIYN 130 (194)
Q Consensus 64 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-------------p~~~ty~~li~~~~~~g~~~~a~~l~~ 130 (194)
..|+..+......+... ..|+...|..++++....+-. .+....-.++.+. ..|+.+.|..+++
T Consensus 193 ~egi~id~~al~~La~~--s~G~lr~al~~Ldkl~~~~~~~It~~~V~~~lg~~~~~~vf~Li~ai-~~~d~~~al~~l~ 269 (486)
T PRK14953 193 EEKIEYEEKALDLLAQA--SEGGMRDAASLLDQASTYGEGKVTIKVVEEFLGIVSQESVRKFLNLL-LESDVDEAIKFLR 269 (486)
T ss_pred HcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCCCHHHHHHHHHHH-HCCCHHHHHHHHH
Confidence 45665555555554443 336677777777766433210 0111233344443 4477788888888
Q ss_pred HhHhCCCCCC
Q 029406 131 EMRSSPATPI 140 (194)
Q Consensus 131 ~M~~~g~~p~ 140 (194)
.+...|..|.
T Consensus 270 ~L~~~g~~~~ 279 (486)
T PRK14953 270 TLEEKGYNLN 279 (486)
T ss_pred HHHHcCCCHH
Confidence 8777776654
No 455
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=21.27 E-value=3.7e+02 Score=24.16 Aligned_cols=71 Identities=13% Similarity=0.176 Sum_probs=44.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCCh-------HHHHHHHHHhHhCCCCCCh---hhHH
Q 029406 76 DMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP-------SEAMFIYNEMRSSPATPIS---LPFR 145 (194)
Q Consensus 76 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~-------~~a~~l~~~M~~~g~~p~~---~ty~ 145 (194)
.+|-.|.|+|++++|.++..... ..+......|-..+..|+...+- ++...-|++........|+ ..|.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~-~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~ 194 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENR-NQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYK 194 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTG-GGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhh-hhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Confidence 57778889999999999985553 34555667788899999886332 3555566665544332244 4666
Q ss_pred HH
Q 029406 146 VI 147 (194)
Q Consensus 146 ~l 147 (194)
+|
T Consensus 195 il 196 (613)
T PF04097_consen 195 IL 196 (613)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 456
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.27 E-value=7.1e+02 Score=23.62 Aligned_cols=55 Identities=9% Similarity=0.031 Sum_probs=26.1
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 029406 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDL 97 (194)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m 97 (194)
+|.-|....++..--..++.+. ..| ..+..+-+.||.+|.+.++.+....+.+..
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~-~~g-la~~dhttlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALH-KKG-LANSDHTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHH-Hcc-cccchhHHHHHHHHHHhcchHHHHHHHhcC
Confidence 3444444444444444444443 122 234445556666666666665555444433
No 457
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=21.20 E-value=2.1e+02 Score=23.61 Aligned_cols=60 Identities=10% Similarity=-0.015 Sum_probs=42.1
Q ss_pred CHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHH
Q 029406 50 QVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGD 111 (194)
Q Consensus 50 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~ 111 (194)
.+-+|.-+++.... .-+-|-..=-.+++.|...|....|..+|..+.-..++.|+..|..
T Consensus 198 ~l~~Ai~lLE~~l~--~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~~ 257 (365)
T PF09797_consen 198 YLLQAIALLEHALK--KSPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHLI 257 (365)
T ss_pred HHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHHH
Confidence 44567777777753 2233445555688999999999999999998877767766655544
No 458
>TIGR03236 dnd_assoc_1 dnd system-associated protein 1. A DNA sulfur modification system, dnd (degradation during electrophoresis), is sparsely and sporadically distributed among the bacteria. Members of this protein family are strictly limited to species with the dnd operon, and are found close to the dnd operon on the chromosomes of Bacillus cereus E33L, Hahella chejuensis KCTC 2396, and Pseudoalteromonas haloplanktis TAC12.
Probab=20.97 E-value=2.6e+02 Score=23.43 Aligned_cols=55 Identities=9% Similarity=0.090 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHhcC-CHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHH
Q 029406 34 LKSDLVSVLAEFQRQD-QVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVE 89 (194)
Q Consensus 34 ~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 89 (194)
+..+++.+|..+|=.. +=-.-.++|.... .+|+--|..+=..+|..|-+.|..++
T Consensus 294 lnQd~LLLLT~l~Vg~~~Kl~l~~L~~eFe-kRGvffD~~SkqeiI~fyEkin~lEK 349 (363)
T TIGR03236 294 MNQDYLLLLTNLAVGEREKLPLNRLIEEFS-KRGVAFDRQSQQMLIEFYERHGNLER 349 (363)
T ss_pred ccHHHHHHHHHHHhCCcccchHHHHHHHHH-hcCceeCchhHHHHHHHHHHhCcccc
No 459
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.79 E-value=5.8e+02 Score=22.38 Aligned_cols=38 Identities=13% Similarity=0.148 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHH
Q 029406 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQH 107 (194)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 107 (194)
+...+..+++.....+....|+.++.+|.+.|..|...
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 55556667777766666789999999999999888654
No 460
>PF14044 NETI: NETI protein
Probab=20.72 E-value=83 Score=18.68 Aligned_cols=17 Identities=12% Similarity=0.116 Sum_probs=13.1
Q ss_pred HHHHHHHHhHhCCCCCC
Q 029406 124 EAMFIYNEMRSSPATPI 140 (194)
Q Consensus 124 ~a~~l~~~M~~~g~~p~ 140 (194)
...++++.|.+.|+.|-
T Consensus 9 TI~~CL~RM~~eGY~Pv 25 (57)
T PF14044_consen 9 TISDCLARMKKEGYMPV 25 (57)
T ss_pred cHHHHHHHHHHcCCCce
Confidence 44568899999998874
No 461
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=20.49 E-value=7.6e+02 Score=23.65 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=21.1
Q ss_pred HHhHHHHHHHHhcCC--ChHHHHHHHHHhHhC
Q 029406 106 QHTFGDIIRAFSDSG--LPSEAMFIYNEMRSS 135 (194)
Q Consensus 106 ~~ty~~li~~~~~~g--~~~~a~~l~~~M~~~ 135 (194)
..-+..+|.+|++.+ +++.|+.+...+++.
T Consensus 812 ~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 812 DKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 344667777777777 777777777777655
No 462
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.48 E-value=6e+02 Score=22.46 Aligned_cols=84 Identities=12% Similarity=0.051 Sum_probs=42.2
Q ss_pred CHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh--cCCChHHHH
Q 029406 50 QVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLAR-NKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS--DSGLPSEAM 126 (194)
Q Consensus 50 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~--~~g~~~~a~ 126 (194)
+...|+.+|..-- ..| .|+....-..+..... -.+...|..+|......|.. ....+-+++.-.. -..+...|.
T Consensus 308 d~~~A~~~~~~aA-~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~ 384 (552)
T KOG1550|consen 308 DYEKALKLYTKAA-ELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAF 384 (552)
T ss_pred cHHHHHHHHHHHH-hcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHH
Confidence 4455666666554 222 3344333333333333 24566777777777766643 3333333332222 224566666
Q ss_pred HHHHHhHhCC
Q 029406 127 FIYNEMRSSP 136 (194)
Q Consensus 127 ~l~~~M~~~g 136 (194)
.++....+.|
T Consensus 385 ~~~k~aA~~g 394 (552)
T KOG1550|consen 385 AYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHcc
Confidence 6776666666
No 463
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=20.38 E-value=42 Score=21.58 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=9.2
Q ss_pred CCCChhhHHHHHHhhCCCCc
Q 029406 137 ATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 137 ~~p~~~ty~~ll~~~~~~g~ 156 (194)
..-+..+|.+.|++|.+.|.
T Consensus 20 Lsk~~~vyRvFiNgYar~g~ 39 (88)
T PF11491_consen 20 LSKNEAVYRVFINGYARNGF 39 (88)
T ss_dssp TTTTTTB------TTSS--E
T ss_pred hhcccceeeeeecccccceE
Confidence 44567899999999999885
No 464
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=20.33 E-value=2.3e+02 Score=17.66 Aligned_cols=49 Identities=14% Similarity=0.112 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC
Q 029406 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 69 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 119 (194)
|+......++..|.. ++++++...+..+...|+.++. ..+.+...+...
T Consensus 3 p~~~~i~~i~~~~~~-~~~~~~~~~~~~l~~~G~s~~~-Il~~l~~~l~~~ 51 (89)
T PF08542_consen 3 PPPEVIEEILESCLN-GDFKEARKKLYELLVEGYSASD-ILKQLHEVLVES 51 (89)
T ss_dssp --HHHHHHHHHHHHH-TCHHHHHHHHHHHHHTT--HHH-HHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHh-CCHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHh
Confidence 334444555555533 4677777777777766666443 345555555554
No 465
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=20.21 E-value=6.1e+02 Score=22.44 Aligned_cols=100 Identities=13% Similarity=0.082 Sum_probs=61.9
Q ss_pred HHHHHHHh--cCCH--hHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCCCHH-----
Q 029406 40 SVLAEFQR--QDQV--FLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE---VLFDQH----- 107 (194)
Q Consensus 40 ~ll~~~~~--~~~~--~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g---~~p~~~----- 107 (194)
.+|..|-+ .+++ +.-...++......|+.-+...+..+.+ ...|...+++.+++++...| +.++.+
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~--~a~Gs~RDalslLDq~i~~~~~~It~~~v~~~lG 242 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIAR--AAEGSLRDALSLLDQAIAFGEGEITLESVRDMLG 242 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHH--HcCCChhhHHHHHHHHHHccCCcccHHHHHHHhC
Confidence 45555543 2333 3445556666556777777666555433 35688899999999988765 222211
Q ss_pred -----hHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChh
Q 029406 108 -----TFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISL 142 (194)
Q Consensus 108 -----ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ 142 (194)
....++.+ .-.++...++..++++.+.|..|...
T Consensus 243 ~~~~~~~~~~~~~-i~~~d~~~~~~~~~~l~~~G~~~~~~ 281 (515)
T COG2812 243 LTDIEKLLSLLEA-ILKGDAKEALRLINELIEEGKDPEAF 281 (515)
T ss_pred CCCHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCcCHHHH
Confidence 12222222 34588999999999999999777543
No 466
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=20.15 E-value=2.6e+02 Score=18.07 Aligned_cols=30 Identities=13% Similarity=0.087 Sum_probs=15.3
Q ss_pred CChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCC
Q 029406 120 GLPSEAMFIYNEMRSSPATPISLPFRVILKGLIP 153 (194)
Q Consensus 120 g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~ 153 (194)
...+++..+++....+| ..+|.++..++-.
T Consensus 48 t~~~k~~~Lld~L~~RG----~~AF~~F~~aL~~ 77 (90)
T cd08332 48 TSFSQNVALLNLLPKRG----PRAFSAFCEALRE 77 (90)
T ss_pred CcHHHHHHHHHHHHHhC----hhHHHHHHHHHHh
Confidence 34455555555555554 3445555555443
No 467
>COG5210 GTPase-activating protein [General function prediction only]
Probab=20.04 E-value=3e+02 Score=23.88 Aligned_cols=57 Identities=21% Similarity=0.156 Sum_probs=45.5
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHH
Q 029406 55 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDI 112 (194)
Q Consensus 55 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~l 112 (194)
-+++.++. ..++.+...++.-++..+.+....+.|.++|+.+--.|..-....+-++
T Consensus 362 p~l~~hl~-~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~~~~ 418 (496)
T COG5210 362 PELYEHLL-REGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAI 418 (496)
T ss_pred HHHHHHHH-HcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 45788888 7889999999999999999999999999999999888765443333333
Done!