Query 029406
Match_columns 194
No_of_seqs 128 out of 1236
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 20:23:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029406.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029406hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 2.1E-29 7.2E-34 213.9 14.6 152 22-179 48-208 (501)
2 4g26_A Pentatricopeptide repea 100.0 8.2E-29 2.8E-33 210.2 15.7 158 18-181 8-175 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 1.7E-25 5.6E-30 198.8 12.2 134 36-174 128-264 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.9 6.4E-22 2.2E-26 176.0 8.9 110 70-183 126-238 (1134)
5 2xpi_A Anaphase-promoting comp 99.4 2.3E-11 7.9E-16 103.4 15.7 135 36-178 442-582 (597)
6 2xpi_A Anaphase-promoting comp 99.3 3.4E-11 1.2E-15 102.3 15.6 135 36-178 408-548 (597)
7 2fo7_A Synthetic consensus TPR 99.0 2.9E-08 9.8E-13 66.9 13.6 131 38-177 4-134 (136)
8 1w3b_A UDP-N-acetylglucosamine 98.9 1.5E-07 5.3E-12 75.7 19.1 133 36-177 238-370 (388)
9 1w3b_A UDP-N-acetylglucosamine 98.7 2.2E-06 7.5E-11 68.9 18.6 128 40-177 208-336 (388)
10 2vq2_A PILW, putative fimbrial 98.7 1.1E-06 3.8E-11 64.5 15.3 130 37-174 44-175 (225)
11 2ho1_A Type 4 fimbrial biogene 98.7 4.3E-06 1.5E-10 62.9 18.8 114 40-156 76-190 (252)
12 3mkr_A Coatomer subunit epsilo 98.7 9.4E-07 3.2E-11 69.3 15.3 133 38-179 133-268 (291)
13 2ho1_A Type 4 fimbrial biogene 98.7 2.9E-06 9.8E-11 63.8 17.4 136 36-179 106-242 (252)
14 2vq2_A PILW, putative fimbrial 98.7 1.1E-06 3.8E-11 64.5 14.7 134 36-177 9-144 (225)
15 2y4t_A DNAJ homolog subfamily 98.6 6.6E-07 2.3E-11 73.0 13.8 127 42-178 150-289 (450)
16 3mkr_A Coatomer subunit epsilo 98.6 2.3E-06 7.8E-11 67.1 16.0 125 37-176 103-230 (291)
17 3as5_A MAMA; tetratricopeptide 98.6 7.6E-07 2.6E-11 63.2 12.1 130 36-174 43-172 (186)
18 2y4t_A DNAJ homolog subfamily 98.6 4.1E-06 1.4E-10 68.3 17.2 132 36-178 212-361 (450)
19 3as5_A MAMA; tetratricopeptide 98.6 1.5E-06 5E-11 61.7 12.0 131 38-177 11-141 (186)
20 3hym_B Cell division cycle pro 98.5 5.4E-06 1.8E-10 64.4 16.2 133 37-177 161-301 (330)
21 2q7f_A YRRB protein; TPR, prot 98.5 6.3E-06 2.2E-10 61.3 16.0 132 37-177 93-224 (243)
22 1fch_A Peroxisomal targeting s 98.5 6.1E-07 2.1E-11 71.2 10.4 127 42-175 188-314 (368)
23 3cv0_A Peroxisome targeting si 98.5 8.9E-06 3E-10 63.0 16.5 130 36-173 173-313 (327)
24 2q7f_A YRRB protein; TPR, prot 98.5 4.1E-06 1.4E-10 62.3 13.4 133 35-176 57-189 (243)
25 1b89_A Protein (clathrin heavy 98.5 3.5E-08 1.2E-12 81.9 1.4 84 69-172 120-203 (449)
26 4eqf_A PEX5-related protein; a 98.4 6.6E-06 2.3E-10 65.4 14.3 64 105-174 212-275 (365)
27 4eqf_A PEX5-related protein; a 98.4 7.8E-07 2.7E-11 70.9 8.7 126 42-174 184-309 (365)
28 1xnf_A Lipoprotein NLPI; TPR, 98.4 6.9E-06 2.3E-10 62.3 13.6 128 36-173 44-171 (275)
29 1fch_A Peroxisomal targeting s 98.4 2.3E-05 7.9E-10 62.0 16.7 133 37-177 100-282 (368)
30 3vtx_A MAMA; tetratricopeptide 98.4 3.9E-05 1.3E-09 55.0 16.4 133 36-177 40-172 (184)
31 2pl2_A Hypothetical conserved 98.4 3.3E-05 1.1E-09 57.5 16.2 114 49-173 98-212 (217)
32 1na0_A Designed protein CTPR3; 98.4 1.8E-05 6.2E-10 52.2 13.2 97 36-135 10-106 (125)
33 3hym_B Cell division cycle pro 98.4 1.8E-05 6.1E-10 61.4 14.9 127 38-173 93-220 (330)
34 1hh8_A P67PHOX, NCF-2, neutrop 98.4 2.3E-05 7.8E-10 57.4 14.5 127 40-177 11-152 (213)
35 3u4t_A TPR repeat-containing p 98.4 1.6E-05 5.4E-10 60.3 14.0 134 36-178 38-174 (272)
36 3uq3_A Heat shock protein STI1 98.4 4E-06 1.4E-10 62.8 10.5 138 35-178 38-205 (258)
37 1xnf_A Lipoprotein NLPI; TPR, 98.3 4.3E-06 1.5E-10 63.4 10.2 125 47-179 17-144 (275)
38 3cv0_A Peroxisome targeting si 98.3 5.4E-05 1.9E-09 58.5 16.6 97 71-174 172-268 (327)
39 2fo7_A Synthetic consensus TPR 98.3 0.00015 5E-09 48.1 16.8 97 36-135 36-132 (136)
40 1b89_A Protein (clathrin heavy 98.3 6.1E-07 2.1E-11 74.5 5.1 114 35-172 61-174 (449)
41 4i17_A Hypothetical protein; T 98.3 4.2E-05 1.4E-09 56.8 14.8 135 36-178 8-149 (228)
42 3ieg_A DNAJ homolog subfamily 98.3 6.1E-05 2.1E-09 58.8 16.3 132 36-177 72-219 (359)
43 3uq3_A Heat shock protein STI1 98.3 1.3E-05 4.5E-10 59.9 11.9 134 36-176 80-237 (258)
44 2gw1_A Mitochondrial precursor 98.3 2.9E-05 1E-09 64.0 14.7 128 37-174 239-366 (514)
45 2pl2_A Hypothetical conserved 98.3 6E-05 2.1E-09 56.0 15.0 132 36-177 40-182 (217)
46 3vtx_A MAMA; tetratricopeptide 98.2 4.6E-05 1.6E-09 54.5 13.8 132 36-177 6-138 (184)
47 1ouv_A Conserved hypothetical 98.2 0.00038 1.3E-08 52.9 19.7 81 48-135 55-143 (273)
48 3ieg_A DNAJ homolog subfamily 98.2 0.0001 3.5E-09 57.5 16.8 128 42-178 127-266 (359)
49 3fp2_A TPR repeat-containing p 98.2 4.2E-05 1.4E-09 63.6 14.5 128 38-174 279-406 (537)
50 3edt_B KLC 2, kinesin light ch 98.2 1.4E-05 4.9E-10 60.4 10.5 134 36-174 44-197 (283)
51 3nf1_A KLC 1, kinesin light ch 98.2 2.6E-05 9E-10 59.9 11.9 134 36-174 70-223 (311)
52 2gw1_A Mitochondrial precursor 98.2 6.4E-05 2.2E-09 61.9 14.5 95 38-136 9-103 (514)
53 1ouv_A Conserved hypothetical 98.2 0.0007 2.4E-08 51.5 19.4 128 36-178 75-218 (273)
54 2lni_A Stress-induced-phosphop 98.1 8.4E-05 2.9E-09 49.7 12.6 113 36-152 17-129 (133)
55 2vyi_A SGTA protein; chaperone 98.1 0.00012 4.1E-09 48.5 13.2 115 37-155 14-128 (131)
56 3nf1_A KLC 1, kinesin light ch 98.1 1.8E-05 6E-10 60.9 9.9 133 37-174 29-181 (311)
57 3edt_B KLC 2, kinesin light ch 98.1 1.1E-05 3.9E-10 60.9 8.5 99 36-134 86-197 (283)
58 1na0_A Designed protein CTPR3; 98.1 3.6E-05 1.2E-09 50.7 9.9 100 71-177 9-108 (125)
59 3u4t_A TPR repeat-containing p 98.1 0.00029 9.8E-09 53.2 16.2 132 38-177 6-139 (272)
60 3fp2_A TPR repeat-containing p 98.1 9.5E-05 3.2E-09 61.4 14.2 130 38-177 246-375 (537)
61 4abn_A Tetratricopeptide repea 98.1 6.5E-05 2.2E-09 62.8 13.0 131 36-176 138-288 (474)
62 1a17_A Serine/threonine protei 98.0 0.00015 5.2E-09 50.4 12.8 126 38-172 16-143 (166)
63 3u3w_A Transcriptional activat 98.0 7.6E-05 2.6E-09 57.9 11.0 128 40-172 80-222 (293)
64 1elr_A TPR2A-domain of HOP; HO 98.0 0.00044 1.5E-08 45.7 13.3 107 38-148 7-119 (131)
65 2ond_A Cleavage stimulation fa 98.0 0.00031 1.1E-08 54.9 14.4 128 38-175 102-232 (308)
66 4gyw_A UDP-N-acetylglucosamine 98.0 0.00017 5.7E-09 63.7 14.0 126 36-172 44-171 (723)
67 2kck_A TPR repeat; tetratricop 97.9 8.7E-05 3E-09 47.9 9.2 94 39-135 10-106 (112)
68 1elw_A TPR1-domain of HOP; HOP 97.9 0.001 3.5E-08 43.0 14.6 95 38-135 7-101 (118)
69 4gco_A Protein STI-1; structur 97.9 0.00048 1.6E-08 46.8 13.3 91 42-135 20-110 (126)
70 1p5q_A FKBP52, FK506-binding p 97.9 0.00027 9.2E-09 56.3 13.6 115 38-157 150-280 (336)
71 2vsy_A XCC0866; transferase, g 97.9 0.00031 1E-08 59.7 14.4 132 36-176 24-158 (568)
72 2ond_A Cleavage stimulation fa 97.9 0.00029 1E-08 55.0 13.4 133 37-177 136-272 (308)
73 2dba_A Smooth muscle cell asso 97.9 0.0012 4.3E-08 44.7 15.0 96 36-135 29-128 (148)
74 2e2e_A Formate-dependent nitri 97.9 4.3E-05 1.5E-09 54.5 7.6 95 38-135 47-144 (177)
75 3gyz_A Chaperone protein IPGC; 97.9 0.00016 5.3E-09 51.2 10.1 92 40-135 41-133 (151)
76 2kck_A TPR repeat; tetratricop 97.8 0.00094 3.2E-08 42.8 12.8 102 71-179 6-110 (112)
77 4gyw_A UDP-N-acetylglucosamine 97.8 0.00099 3.4E-08 58.8 16.4 131 37-177 11-142 (723)
78 2lni_A Stress-induced-phosphop 97.8 0.00023 8E-09 47.4 9.6 103 68-177 13-115 (133)
79 4abn_A Tetratricopeptide repea 97.8 0.00027 9.2E-09 59.0 11.7 130 37-177 104-252 (474)
80 2ooe_A Cleavage stimulation fa 97.8 0.0005 1.7E-08 57.8 13.4 128 38-175 324-454 (530)
81 3mv2_B Coatomer subunit epsilo 97.8 0.00043 1.5E-08 54.9 12.2 126 38-173 103-238 (310)
82 3qky_A Outer membrane assembly 97.8 0.00071 2.4E-08 51.2 13.1 136 36-177 16-179 (261)
83 4i17_A Hypothetical protein; T 97.8 0.0012 3.9E-08 48.8 14.0 114 37-156 44-168 (228)
84 1elr_A TPR2A-domain of HOP; HO 97.8 0.00015 5.3E-09 48.0 8.3 107 71-183 4-116 (131)
85 1elw_A TPR1-domain of HOP; HOP 97.8 0.00029 9.9E-09 45.7 9.5 102 70-178 3-104 (118)
86 3q49_B STIP1 homology and U bo 97.8 0.0014 4.7E-08 44.1 13.2 96 36-134 10-105 (137)
87 2yhc_A BAMD, UPF0169 lipoprote 97.8 0.0014 4.7E-08 48.7 14.3 134 36-178 42-216 (225)
88 1qqe_A Vesicular transport pro 97.8 0.00087 3E-08 52.0 13.6 135 37-176 79-229 (292)
89 3sz7_A HSC70 cochaperone (SGT) 97.7 0.0012 4.1E-08 46.3 13.1 96 37-135 13-108 (164)
90 3upv_A Heat shock protein STI1 97.7 0.0017 5.8E-08 43.3 13.1 95 38-135 7-101 (126)
91 2xcb_A PCRH, regulatory protei 97.7 0.0013 4.5E-08 45.1 12.6 94 39-135 22-115 (142)
92 3gyz_A Chaperone protein IPGC; 97.7 0.0011 3.7E-08 46.8 12.3 111 67-184 31-142 (151)
93 4ga2_A E3 SUMO-protein ligase 97.7 0.0029 9.9E-08 44.0 14.3 114 37-156 33-149 (150)
94 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.0014 4.6E-08 54.5 14.6 134 38-173 271-417 (457)
95 3qou_A Protein YBBN; thioredox 97.6 0.0005 1.7E-08 53.4 10.8 146 21-178 104-251 (287)
96 3k9i_A BH0479 protein; putativ 97.6 0.00016 5.4E-09 48.2 6.8 104 47-152 2-108 (117)
97 2vgx_A Chaperone SYCD; alterna 97.6 0.0028 9.4E-08 44.1 13.6 95 38-135 24-118 (148)
98 3mv2_B Coatomer subunit epsilo 97.6 0.0041 1.4E-07 49.2 15.9 134 35-180 136-287 (310)
99 3qky_A Outer membrane assembly 97.6 0.0016 5.3E-08 49.3 13.1 140 36-177 53-226 (261)
100 2qfc_A PLCR protein; TPR, HTH, 97.6 0.0052 1.8E-07 47.4 16.4 132 37-173 77-223 (293)
101 2vyi_A SGTA protein; chaperone 97.6 0.00053 1.8E-08 45.2 9.3 101 70-177 11-111 (131)
102 2xev_A YBGF; tetratricopeptide 97.6 0.0014 4.8E-08 43.6 11.5 95 39-135 6-105 (129)
103 2h6f_A Protein farnesyltransfe 97.6 0.00029 9.8E-09 57.5 9.0 133 40-177 136-271 (382)
104 3u3w_A Transcriptional activat 97.6 0.0068 2.3E-07 46.7 16.6 116 41-156 121-251 (293)
105 3q49_B STIP1 homology and U bo 97.6 0.00057 2E-08 46.0 9.2 102 69-177 7-108 (137)
106 4gco_A Protein STI-1; structur 97.6 0.00044 1.5E-08 47.0 8.6 99 73-178 15-113 (126)
107 2fbn_A 70 kDa peptidylprolyl i 97.6 0.0021 7.3E-08 46.5 12.7 117 38-156 41-171 (198)
108 2dba_A Smooth muscle cell asso 97.5 0.00088 3E-08 45.4 9.7 102 69-178 26-131 (148)
109 3urz_A Uncharacterized protein 97.5 0.0013 4.4E-08 48.4 10.9 127 41-180 60-191 (208)
110 1qqe_A Vesicular transport pro 97.5 0.0041 1.4E-07 48.1 14.3 137 37-180 119-274 (292)
111 3sz7_A HSC70 cochaperone (SGT) 97.5 0.00064 2.2E-08 47.8 8.7 99 70-175 10-108 (164)
112 2vsy_A XCC0866; transferase, g 97.5 0.00063 2.2E-08 57.7 10.0 121 48-177 2-122 (568)
113 2vgx_A Chaperone SYCD; alterna 97.5 0.0011 3.7E-08 46.2 9.5 100 70-176 20-119 (148)
114 2xcb_A PCRH, regulatory protei 97.5 0.00096 3.3E-08 45.8 9.1 99 71-176 18-116 (142)
115 2h6f_A Protein farnesyltransfe 97.5 0.0041 1.4E-07 50.6 14.1 128 38-172 169-302 (382)
116 4gcn_A Protein STI-1; structur 97.4 0.0046 1.6E-07 41.7 12.3 99 42-145 15-120 (127)
117 2qfc_A PLCR protein; TPR, HTH, 97.4 0.0046 1.6E-07 47.7 13.6 130 41-170 121-268 (293)
118 4ga2_A E3 SUMO-protein ligase 97.4 0.00014 5E-09 50.9 4.5 105 47-156 9-114 (150)
119 2e2e_A Formate-dependent nitri 97.4 0.012 4E-07 41.4 14.8 126 45-179 20-148 (177)
120 3urz_A Uncharacterized protein 97.4 0.0034 1.2E-07 46.1 11.9 94 74-172 57-150 (208)
121 3ulq_A Response regulator aspa 97.4 0.0025 8.5E-08 51.0 12.0 130 38-172 146-290 (383)
122 1hxi_A PEX5, peroxisome target 97.4 0.0029 1E-07 42.4 10.6 96 37-135 19-114 (121)
123 1a17_A Serine/threonine protei 97.3 0.0022 7.5E-08 44.3 10.0 99 72-177 14-112 (166)
124 3upv_A Heat shock protein STI1 97.3 0.0018 6.3E-08 43.1 9.0 98 72-176 5-102 (126)
125 3sf4_A G-protein-signaling mod 97.3 0.00097 3.3E-08 53.0 8.8 131 37-172 189-333 (406)
126 3ro3_A PINS homolog, G-protein 97.3 0.0018 6.3E-08 44.0 9.0 130 37-171 11-154 (164)
127 1hh8_A P67PHOX, NCF-2, neutrop 97.3 0.015 5E-07 42.0 14.4 99 35-135 37-150 (213)
128 1xi4_A Clathrin heavy chain; a 97.3 0.0061 2.1E-07 57.2 14.5 109 38-170 1137-1245(1630)
129 2yhc_A BAMD, UPF0169 lipoprote 97.3 0.0067 2.3E-07 44.9 12.6 132 38-176 7-177 (225)
130 2ooe_A Cleavage stimulation fa 97.3 0.004 1.4E-07 52.2 12.5 129 37-174 358-491 (530)
131 3ro2_A PINS homolog, G-protein 97.3 0.0018 6.2E-08 49.6 9.6 132 37-173 185-330 (338)
132 3gw4_A Uncharacterized protein 97.2 0.0014 4.7E-08 47.1 8.1 132 36-172 27-173 (203)
133 3q15_A PSP28, response regulat 97.2 0.0025 8.7E-08 50.9 10.5 130 38-172 144-287 (378)
134 2xev_A YBGF; tetratricopeptide 97.2 0.0027 9.3E-08 42.1 9.0 96 77-178 8-108 (129)
135 2pzi_A Probable serine/threoni 97.2 0.0015 5E-08 57.1 9.4 132 36-177 434-565 (681)
136 3rjv_A Putative SEL1 repeat pr 97.2 0.023 7.7E-07 41.7 14.7 52 84-135 102-158 (212)
137 1wao_1 Serine/threonine protei 97.2 0.0011 3.8E-08 55.5 8.2 117 45-170 16-134 (477)
138 4a1s_A PINS, partner of inscut 97.2 0.0022 7.5E-08 51.3 9.3 132 37-173 225-370 (411)
139 2ifu_A Gamma-SNAP; membrane fu 97.1 0.0042 1.4E-07 48.4 10.6 131 37-173 78-222 (307)
140 3ulq_A Response regulator aspa 97.1 0.0075 2.6E-07 48.1 12.1 133 38-172 187-332 (383)
141 1hxi_A PEX5, peroxisome target 97.1 0.0034 1.1E-07 42.1 8.2 97 74-177 20-116 (121)
142 2r5s_A Uncharacterized protein 97.1 0.0018 6.1E-08 46.1 7.1 115 38-156 43-159 (176)
143 4gcn_A Protein STI-1; structur 97.1 0.0043 1.5E-07 41.9 8.7 105 73-183 10-120 (127)
144 3gw4_A Uncharacterized protein 97.1 0.0016 5.5E-08 46.7 6.8 120 46-172 3-133 (203)
145 4f3v_A ESX-1 secretion system 97.0 0.0016 5.5E-08 50.9 7.0 131 39-178 106-240 (282)
146 2c2l_A CHIP, carboxy terminus 97.0 0.018 6E-07 44.4 13.0 94 38-134 7-100 (281)
147 2xm6_A Protein corresponding t 97.0 0.11 3.6E-06 43.0 19.9 82 48-136 128-217 (490)
148 2if4_A ATFKBP42; FKBP-like, al 97.0 0.0045 1.5E-07 49.2 9.6 126 38-174 182-327 (338)
149 1ihg_A Cyclophilin 40; ppiase 97.0 0.008 2.7E-07 48.5 11.2 117 38-156 226-356 (370)
150 4a1s_A PINS, partner of inscut 97.0 0.0016 5.6E-08 52.1 7.0 58 41-98 92-153 (411)
151 3rkv_A Putative peptidylprolyl 97.0 0.011 3.8E-07 41.1 10.5 97 38-135 14-126 (162)
152 3rjv_A Putative SEL1 repeat pr 97.0 0.064 2.2E-06 39.2 17.0 130 33-175 16-158 (212)
153 1p5q_A FKBP52, FK506-binding p 96.9 0.017 5.9E-07 45.7 12.5 95 36-133 197-292 (336)
154 2xm6_A Protein corresponding t 96.9 0.13 4.4E-06 42.5 19.7 126 38-178 78-219 (490)
155 1xi4_A Clathrin heavy chain; a 96.9 0.013 4.3E-07 55.2 12.9 118 35-173 1105-1222(1630)
156 3k9i_A BH0479 protein; putativ 96.9 0.00026 9.1E-09 47.0 1.4 88 83-176 2-91 (117)
157 2c2l_A CHIP, carboxy terminus 96.9 0.0073 2.5E-07 46.6 9.7 100 70-176 3-102 (281)
158 2r5s_A Uncharacterized protein 96.8 0.0081 2.8E-07 42.6 8.9 131 37-177 8-139 (176)
159 3q15_A PSP28, response regulat 96.8 0.031 1E-06 44.5 13.3 132 38-171 185-328 (378)
160 2l6j_A TPR repeat-containing p 96.8 0.004 1.4E-07 40.0 6.6 65 70-135 3-67 (111)
161 3qou_A Protein YBBN; thioredox 96.8 0.017 5.7E-07 44.6 11.1 117 36-156 152-270 (287)
162 2ifu_A Gamma-SNAP; membrane fu 96.8 0.0071 2.4E-07 47.1 8.8 130 38-173 39-182 (307)
163 2kat_A Uncharacterized protein 96.7 0.021 7.2E-07 37.2 9.7 79 53-134 3-81 (115)
164 2fbn_A 70 kDa peptidylprolyl i 96.7 0.016 5.6E-07 41.7 9.5 101 71-177 38-153 (198)
165 2hr2_A Hypothetical protein; a 96.6 0.052 1.8E-06 38.6 11.5 93 38-133 14-129 (159)
166 3sf4_A G-protein-signaling mod 96.6 0.0032 1.1E-07 49.9 5.7 130 38-172 90-253 (406)
167 3n71_A Histone lysine methyltr 96.6 0.032 1.1E-06 46.9 12.0 126 42-172 316-461 (490)
168 1klx_A Cysteine rich protein B 96.6 0.016 5.4E-07 39.8 8.5 114 49-179 9-130 (138)
169 4e6h_A MRNA 3'-END-processing 96.6 0.015 5.1E-07 50.9 10.1 133 37-176 436-571 (679)
170 1na3_A Designed protein CTPR2; 96.5 0.024 8.4E-07 34.7 8.7 61 73-134 11-71 (91)
171 3ro3_A PINS homolog, G-protein 96.5 0.068 2.3E-06 35.8 11.6 98 37-134 51-157 (164)
172 1hz4_A MALT regulatory protein 96.5 0.11 3.8E-06 40.8 14.3 128 40-172 58-200 (373)
173 2pzi_A Probable serine/threoni 96.5 0.0058 2E-07 53.3 7.2 121 46-174 402-528 (681)
174 3ro2_A PINS homolog, G-protein 96.5 0.034 1.2E-06 42.3 10.7 99 37-135 225-332 (338)
175 3qwp_A SET and MYND domain-con 96.4 0.049 1.7E-06 45.0 12.1 97 37-133 289-398 (429)
176 3rkv_A Putative peptidylprolyl 96.4 0.014 4.8E-07 40.6 7.7 101 73-179 13-130 (162)
177 4b4t_Q 26S proteasome regulato 96.2 0.017 5.9E-07 46.5 8.1 131 37-172 57-201 (434)
178 1hz4_A MALT regulatory protein 96.1 0.2 6.8E-06 39.3 13.9 128 40-172 140-279 (373)
179 1na3_A Designed protein CTPR2; 96.1 0.1 3.5E-06 31.7 10.4 79 37-118 11-89 (91)
180 3ma5_A Tetratricopeptide repea 96.1 0.062 2.1E-06 34.2 8.9 61 71-132 7-67 (100)
181 1kt0_A FKBP51, 51 kDa FK506-bi 96.1 0.043 1.5E-06 45.4 9.9 101 71-177 268-382 (457)
182 2l6j_A TPR repeat-containing p 96.0 0.047 1.6E-06 34.7 8.0 84 38-125 7-97 (111)
183 4e6h_A MRNA 3'-END-processing 95.9 0.044 1.5E-06 48.0 9.7 132 39-177 382-535 (679)
184 2if4_A ATFKBP42; FKBP-like, al 95.8 0.038 1.3E-06 43.8 8.1 98 72-177 180-295 (338)
185 1ihg_A Cyclophilin 40; ppiase 95.8 0.042 1.4E-06 44.3 8.4 99 73-177 225-338 (370)
186 3qww_A SET and MYND domain-con 95.7 0.1 3.5E-06 43.1 10.8 86 48-133 311-409 (433)
187 4g1t_A Interferon-induced prot 95.6 0.21 7.1E-06 40.4 12.3 51 48-100 226-276 (472)
188 1wao_1 Serine/threonine protei 95.5 0.037 1.3E-06 46.2 7.4 90 80-176 15-104 (477)
189 3ma5_A Tetratricopeptide repea 95.4 0.1 3.4E-06 33.2 7.8 78 36-115 8-86 (100)
190 4g1t_A Interferon-induced prot 95.3 0.1 3.4E-06 42.4 9.3 119 50-175 315-459 (472)
191 2hr2_A Hypothetical protein; a 94.7 0.15 5.1E-06 36.2 7.6 97 75-176 15-132 (159)
192 3e4b_A ALGK; tetratricopeptide 94.7 1.5 5E-05 35.9 15.1 127 37-173 178-314 (452)
193 4f3v_A ESX-1 secretion system 94.6 0.23 8E-06 38.6 9.1 104 43-150 143-250 (282)
194 3e4b_A ALGK; tetratricopeptide 94.6 0.92 3.1E-05 37.2 13.2 130 38-179 144-284 (452)
195 2kat_A Uncharacterized protein 94.5 0.15 5E-06 32.9 6.7 79 89-174 3-81 (115)
196 2kc7_A BFR218_protein; tetratr 94.3 0.47 1.6E-05 29.4 8.8 55 44-100 9-64 (99)
197 2kc7_A BFR218_protein; tetratr 94.3 0.16 5.4E-06 31.7 6.4 57 78-135 7-64 (99)
198 3n71_A Histone lysine methyltr 94.3 0.31 1.1E-05 40.9 9.8 98 38-135 354-464 (490)
199 2v5f_A Prolyl 4-hydroxylase su 94.0 0.55 1.9E-05 30.1 8.8 67 33-99 3-74 (104)
200 1v54_E Cytochrome C oxidase po 93.7 0.91 3.1E-05 29.6 9.3 64 86-150 25-88 (109)
201 3qww_A SET and MYND domain-con 93.6 0.25 8.6E-06 40.8 7.9 84 83-171 310-407 (433)
202 3qwp_A SET and MYND domain-con 93.6 0.28 9.7E-06 40.3 8.2 90 77-171 293-396 (429)
203 2ff4_A Probable regulatory pro 93.1 0.85 2.9E-05 36.9 10.1 67 40-108 176-247 (388)
204 3dra_A Protein farnesyltransfe 93.0 0.63 2.1E-05 36.5 9.0 104 49-156 124-235 (306)
205 2uy1_A Cleavage stimulation fa 92.7 0.96 3.3E-05 37.7 10.2 120 38-172 289-410 (493)
206 2ff4_A Probable regulatory pro 92.0 1.2 4E-05 36.1 9.6 73 76-149 176-256 (388)
207 2y69_E Cytochrome C oxidase su 91.8 2.2 7.6E-05 29.4 9.3 65 86-151 68-132 (152)
208 1dce_A Protein (RAB geranylger 91.6 5.7 0.00019 33.7 15.7 120 51-174 89-220 (567)
209 1zu2_A Mitochondrial import re 91.6 0.62 2.1E-05 32.9 6.6 102 46-153 13-136 (158)
210 3mkq_A Coatomer beta'-subunit; 91.4 1.1 3.6E-05 39.0 9.3 29 69-97 679-707 (814)
211 1pc2_A Mitochondria fission pr 91.1 2.8 9.6E-05 29.3 9.8 18 82-99 82-99 (152)
212 3mkq_A Coatomer beta'-subunit; 90.7 3.1 0.00011 36.1 11.6 81 36-132 682-762 (814)
213 2v5f_A Prolyl 4-hydroxylase su 90.3 2.4 8.1E-05 27.0 9.0 71 69-141 3-79 (104)
214 3ly7_A Transcriptional activat 90.1 3.4 0.00012 33.3 10.4 85 67-155 273-357 (372)
215 4b4t_Q 26S proteasome regulato 89.4 6.7 0.00023 30.9 16.8 118 48-170 108-240 (434)
216 1v54_E Cytochrome C oxidase po 89.3 3.2 0.00011 27.1 8.7 63 50-114 25-87 (109)
217 4h7y_A Dual specificity protei 87.4 4.1 0.00014 28.7 7.9 110 31-143 9-131 (161)
218 3dra_A Protein farnesyltransfe 86.9 9.4 0.00032 29.7 15.3 127 45-179 154-292 (306)
219 3mkq_B Coatomer subunit alpha; 86.2 6.4 0.00022 28.2 8.8 78 38-131 37-114 (177)
220 2uy1_A Cleavage stimulation fa 85.8 14 0.00048 30.6 12.4 25 38-62 216-240 (493)
221 3bee_A Putative YFRE protein; 85.5 4.9 0.00017 25.1 10.2 48 87-135 25-72 (93)
222 3ly7_A Transcriptional activat 85.3 13 0.00045 29.9 11.6 123 49-181 213-345 (372)
223 1klx_A Cysteine rich protein B 84.5 7 0.00024 26.0 14.6 89 43-138 33-129 (138)
224 1wy6_A Hypothetical protein ST 83.6 8.9 0.0003 26.7 8.0 92 40-138 60-157 (172)
225 3u64_A Protein TP_0956; tetrat 83.4 14 0.00049 28.8 11.5 93 52-147 180-283 (301)
226 2y69_E Cytochrome C oxidase su 83.1 9.2 0.00032 26.3 8.7 63 50-114 68-130 (152)
227 3bu8_A Telomeric repeat-bindin 82.5 6.6 0.00023 29.1 7.5 52 4-62 90-141 (235)
228 1dce_A Protein (RAB geranylger 82.4 22 0.00074 30.1 13.5 120 47-176 40-174 (567)
229 2p58_C Putative type III secre 82.2 8.3 0.00028 25.1 7.2 85 48-144 20-106 (116)
230 3dss_A Geranylgeranyl transfer 82.1 17 0.00057 28.7 12.0 94 50-147 125-233 (331)
231 4fhn_B Nucleoporin NUP120; pro 81.5 7.4 0.00025 36.0 9.3 109 44-156 851-986 (1139)
232 1nzn_A CGI-135 protein, fissio 81.2 10 0.00035 25.5 9.6 66 69-135 33-103 (126)
233 2uwj_G Type III export protein 81.1 7.7 0.00026 25.2 6.5 85 48-144 19-105 (115)
234 1zu2_A Mitochondrial import re 80.7 0.88 3E-05 32.1 2.3 98 82-182 13-127 (158)
235 1pc2_A Mitochondria fission pr 80.4 4.8 0.00017 28.1 6.0 88 49-141 12-104 (152)
236 3q7a_A Farnesyltransferase alp 78.7 23 0.00079 28.1 15.7 122 48-173 101-235 (349)
237 3ffl_A Anaphase-promoting comp 78.3 15 0.00053 26.0 8.5 62 37-98 22-90 (167)
238 1wy6_A Hypothetical protein ST 78.2 15 0.0005 25.6 12.9 87 84-181 74-160 (172)
239 4gns_B Protein CSD3, chitin bi 77.5 10 0.00036 33.5 8.5 126 40-173 253-398 (754)
240 3bee_A Putative YFRE protein; 76.9 7.5 0.00026 24.2 5.7 70 103-178 3-75 (93)
241 3q7a_A Farnesyltransferase alp 76.2 27 0.00094 27.7 10.7 93 48-145 67-163 (349)
242 1zbp_A Hypothetical protein VP 75.3 13 0.00044 28.6 7.5 71 43-115 5-77 (273)
243 3mkq_B Coatomer subunit alpha; 74.0 21 0.00073 25.4 9.5 75 46-136 16-90 (177)
244 3pvs_A Replication-associated 73.8 25 0.00085 28.9 9.5 112 67-180 190-329 (447)
245 4b4t_R RPN7, 26S proteasome re 73.4 35 0.0012 27.7 11.0 98 35-134 131-236 (429)
246 3dss_A Geranylgeranyl transfer 69.0 40 0.0014 26.5 16.1 96 51-150 90-188 (331)
247 2ion_A PDCD4, programmed cell 67.6 27 0.00093 24.1 7.3 70 36-107 10-81 (152)
248 2nsz_A Programmed cell death p 63.5 30 0.001 23.1 8.6 70 36-107 8-79 (129)
249 3f3f_C Nucleoporin NUP85; stru 62.7 21 0.00073 30.4 6.8 54 70-125 515-568 (570)
250 2p58_C Putative type III secre 61.4 23 0.00078 23.1 5.3 84 84-180 20-103 (116)
251 1rw2_A ATP-dependent DNA helic 61.3 5.8 0.0002 27.7 2.7 50 86-138 73-126 (152)
252 2xdt_A Endoplasmic reticulum a 59.7 99 0.0034 27.8 11.7 86 41-135 686-779 (897)
253 3ygs_P Procaspase 9; apoptosis 58.9 29 0.00099 21.9 5.7 34 86-123 52-85 (97)
254 2d2s_A Exocyst complex compone 58.2 31 0.0011 25.7 6.5 126 37-172 20-150 (235)
255 2ion_A PDCD4, programmed cell 57.1 45 0.0015 23.0 6.9 68 73-141 11-80 (152)
256 4ets_A Ferric uptake regulatio 56.9 32 0.0011 23.9 6.1 71 52-123 14-86 (162)
257 2uwj_G Type III export protein 56.5 22 0.00075 23.1 4.6 84 84-180 19-102 (115)
258 3u64_A Protein TP_0956; tetrat 55.8 70 0.0024 24.9 8.4 72 38-112 202-283 (301)
259 1k1a_A B-cell lymphoma 3-encod 55.6 13 0.00043 26.7 4.0 13 82-94 87-99 (241)
260 2o03_A Probable zinc uptake re 55.3 22 0.00076 23.6 4.9 47 40-87 15-61 (131)
261 3mwm_A ZUR, putative metal upt 55.0 19 0.00064 24.4 4.5 48 40-88 18-65 (139)
262 4a1g_A Mitotic checkpoint seri 54.9 50 0.0017 22.9 8.9 51 90-140 84-135 (152)
263 4fke_A Aminopeptidase N; zinc 54.2 1.2E+02 0.0042 27.2 11.5 91 40-135 691-787 (909)
264 1nzn_A CGI-135 protein, fissio 53.9 40 0.0014 22.6 5.9 84 87-177 17-105 (126)
265 1q2z_A ATP-dependent DNA helic 53.0 8.5 0.00029 25.6 2.4 30 87-116 43-73 (120)
266 3ctd_A Putative ATPase, AAA fa 52.2 14 0.00047 27.3 3.5 32 84-115 48-79 (213)
267 3bge_A Predicted ATPase; struc 52.2 12 0.00042 27.3 3.2 32 120-151 21-52 (201)
268 2yru_A Steroid receptor RNA ac 51.8 49 0.0017 21.8 7.8 42 93-134 48-89 (118)
269 2xig_A Ferric uptake regulatio 50.6 27 0.00093 23.8 4.8 45 41-86 32-76 (150)
270 4ets_A Ferric uptake regulatio 50.5 45 0.0016 23.1 6.0 66 21-88 19-86 (162)
271 4gns_B Protein CSD3, chitin bi 50.1 1.1E+02 0.0039 27.0 9.6 51 45-98 347-398 (754)
272 3esl_A Checkpoint serine/threo 49.1 74 0.0025 23.2 9.9 67 73-140 82-149 (202)
273 4aez_C MAD3, mitotic spindle c 48.7 80 0.0027 23.4 8.4 53 88-140 131-184 (223)
274 2r9g_A AAA ATPase, central reg 48.5 13 0.00046 27.1 3.0 36 84-120 27-62 (204)
275 2fe3_A Peroxide operon regulat 48.4 30 0.001 23.4 4.7 59 64-123 15-73 (145)
276 3ffl_A Anaphase-promoting comp 47.9 70 0.0024 22.5 7.5 105 64-174 11-150 (167)
277 1mzb_A Ferric uptake regulatio 47.7 28 0.00096 23.2 4.4 45 41-86 23-68 (136)
278 4fhn_B Nucleoporin NUP120; pro 46.6 58 0.002 30.1 7.6 110 40-156 817-953 (1139)
279 3eiq_C Programmed cell death p 46.6 1.1E+02 0.0037 24.4 8.5 76 36-113 218-295 (358)
280 1ug3_A EIF4GI, eukaryotic prot 46.1 32 0.0011 27.0 5.2 96 35-132 11-111 (339)
281 1qsa_A Protein (soluble lytic 45.5 1.5E+02 0.005 25.5 10.7 121 41-172 221-345 (618)
282 3eyy_A Putative iron uptake re 45.0 31 0.0011 23.4 4.3 44 41-86 24-67 (145)
283 2nsz_A Programmed cell death p 45.0 65 0.0022 21.3 8.2 68 73-141 9-78 (129)
284 2w57_A Ferric uptake regulatio 42.9 35 0.0012 23.3 4.4 47 40-87 21-68 (150)
285 4b4t_P 26S proteasome regulato 42.3 1.4E+02 0.0047 24.3 9.3 131 35-172 56-203 (445)
286 2d2s_A Exocyst complex compone 41.7 1E+02 0.0036 22.8 9.6 58 39-100 63-120 (235)
287 3twr_A Tankyrase-2; ankyrin re 41.7 17 0.00057 24.4 2.6 19 41-59 11-29 (165)
288 4h7y_A Dual specificity protei 40.4 92 0.0031 21.8 6.1 65 48-115 73-137 (161)
289 2fe3_A Peroxide operon regulat 40.0 83 0.0028 21.1 6.3 61 95-156 11-71 (145)
290 2p1h_A APAF-1, apoptotic prote 39.9 64 0.0022 19.8 6.0 32 85-120 50-81 (94)
291 2keb_A DNA polymerase subunit 39.5 74 0.0025 20.4 6.6 31 54-85 28-58 (101)
292 3o48_A Mitochondria fission 1 39.5 87 0.003 21.2 7.8 67 33-100 38-107 (134)
293 2yru_A Steroid receptor RNA ac 39.1 51 0.0017 21.8 4.5 44 56-100 47-90 (118)
294 2wvi_A Mitotic checkpoint seri 38.8 99 0.0034 21.6 7.9 55 52-107 77-132 (164)
295 1oai_A Nuclear RNA export fact 38.6 18 0.00063 20.7 2.0 24 48-71 33-56 (59)
296 1mzb_A Ferric uptake regulatio 38.6 62 0.0021 21.5 5.0 60 64-124 11-71 (136)
297 1zbp_A Hypothetical protein VP 38.3 85 0.0029 24.0 6.2 72 79-151 5-78 (273)
298 2rg8_A Programmed cell death p 38.0 62 0.0021 22.6 5.1 69 36-108 11-81 (165)
299 1jog_A Hypothetical protein HI 37.7 13 0.00044 25.6 1.4 48 51-99 54-104 (146)
300 2w57_A Ferric uptake regulatio 37.7 70 0.0024 21.7 5.3 63 60-124 7-70 (150)
301 2xig_A Ferric uptake regulatio 37.4 89 0.0031 21.1 5.8 59 64-123 20-78 (150)
302 3bqo_A Telomeric repeat-bindin 37.4 65 0.0022 23.5 5.1 13 5-17 65-77 (211)
303 3qye_A TBC1 domain family memb 37.1 60 0.002 25.1 5.4 45 93-137 210-254 (331)
304 2zu6_B Programmed cell death p 36.1 1.5E+02 0.0051 22.9 7.9 70 37-108 168-239 (307)
305 1k1a_A B-cell lymphoma 3-encod 34.7 34 0.0011 24.3 3.4 120 40-170 11-137 (241)
306 2qfz_A TBC1 domain family memb 34.7 70 0.0024 24.9 5.5 80 92-176 230-316 (345)
307 2b7e_A PRE-mRNA processing pro 33.8 24 0.00083 20.3 1.9 9 108-116 23-31 (59)
308 4aez_C MAD3, mitotic spindle c 33.3 1.5E+02 0.005 22.0 7.3 68 36-106 117-185 (223)
309 2f6m_A Suppressor protein STP2 32.9 76 0.0026 18.6 4.4 42 74-116 5-46 (65)
310 3eyy_A Putative iron uptake re 32.5 56 0.0019 22.1 4.0 59 64-124 12-70 (145)
311 2qq8_A TBC1 domain family memb 32.5 30 0.001 27.1 2.9 44 93-136 215-258 (334)
312 3lvg_A Clathrin heavy chain 1; 31.4 0.9 3.1E-05 38.5 -6.2 75 41-124 60-134 (624)
313 2keb_A DNA polymerase subunit 31.2 1E+02 0.0036 19.7 6.4 58 88-147 26-88 (101)
314 3esl_A Checkpoint serine/threo 30.7 1.5E+02 0.0053 21.5 10.5 55 50-105 94-149 (202)
315 3hzj_A Rabgap1L, RAB GTPase-ac 30.3 62 0.0021 24.8 4.4 43 94-136 177-219 (310)
316 4b4t_R RPN7, 26S proteasome re 30.2 63 0.0022 26.1 4.6 62 73-134 133-196 (429)
317 2o03_A Probable zinc uptake re 29.7 69 0.0024 21.1 4.1 48 76-123 15-62 (131)
318 2wvi_A Mitotic checkpoint seri 29.7 1.4E+02 0.0049 20.8 10.0 54 88-141 77-131 (164)
319 3txn_A 26S proteasome regulato 29.3 2.2E+02 0.0076 22.8 12.3 90 39-129 103-204 (394)
320 1wgl_A TOLL-interacting protei 28.8 54 0.0018 18.7 2.9 20 120-139 37-56 (59)
321 3eiq_C Programmed cell death p 28.8 2.2E+02 0.0075 22.6 7.7 76 72-148 218-295 (358)
322 3l6a_A Eukaryotic translation 28.7 81 0.0028 25.1 4.9 74 36-114 13-91 (364)
323 3mwm_A ZUR, putative metal upt 28.6 58 0.002 21.8 3.6 50 75-124 17-66 (139)
324 2zu6_B Programmed cell death p 26.3 2E+02 0.0067 22.3 6.6 67 73-140 168-236 (307)
325 2p22_A Suppressor protein STP2 26.1 78 0.0027 22.5 3.9 49 69-118 109-157 (174)
326 4b4t_P 26S proteasome regulato 26.1 2.6E+02 0.0089 22.6 11.2 94 40-133 142-245 (445)
327 3f3f_C Nucleoporin NUP85; stru 25.9 66 0.0023 27.4 4.0 52 36-90 517-568 (570)
328 3aji_A 26S proteasome non-ATPa 25.7 55 0.0019 23.0 3.2 111 40-170 42-160 (231)
329 3r88_A Anthranilate phosphorib 23.9 1.8E+02 0.0061 23.3 6.1 72 69-141 21-94 (377)
330 1xqo_A 8-oxoguanine DNA glycos 23.9 53 0.0018 24.9 2.8 48 123-188 197-248 (256)
331 3jxi_A Vanilloid receptor-rela 23.9 63 0.0022 23.3 3.3 96 41-142 8-122 (260)
332 1wdy_A 2-5A-dependent ribonucl 22.9 83 0.0028 22.7 3.8 87 40-140 7-99 (285)
333 3f6q_A Integrin-linked protein 22.8 71 0.0024 21.5 3.2 6 46-51 47-52 (179)
334 1y8m_A FIS1; mitochondria, unk 22.7 1.9E+02 0.0065 19.8 10.8 67 33-100 37-106 (144)
335 2qq8_A TBC1 domain family memb 22.6 68 0.0023 25.0 3.4 44 57-101 215-258 (334)
336 2of3_A ZYG-9; multifunctional 22.3 67 0.0023 24.4 3.1 82 92-178 113-201 (266)
337 2ko4_A Mediator of RNA polymer 22.1 85 0.0029 19.2 2.9 32 101-132 31-62 (81)
338 3lpz_A GET4 (YOR164C homolog); 21.8 3E+02 0.01 21.7 15.1 21 64-84 87-107 (336)
339 2rg8_A Programmed cell death p 21.5 1E+02 0.0035 21.4 3.8 59 73-133 12-72 (165)
340 3o48_A Mitochondria fission 1 21.1 2E+02 0.0068 19.4 9.5 70 66-135 35-107 (134)
341 3l6a_A Eukaryotic translation 20.9 2.7E+02 0.0092 22.0 6.6 63 73-137 14-79 (364)
342 1otr_A Protein CUE2; protein-p 20.8 1.2E+02 0.004 16.6 3.9 14 84-97 31-44 (49)
343 1uzc_A Hypothetical protein FL 20.4 93 0.0032 18.4 2.9 34 87-121 14-48 (71)
344 3qil_A Clathrin heavy chain 1; 20.2 1.3E+02 0.0044 20.1 3.7 43 111-156 37-79 (125)
345 2dod_A Transcription elongatio 20.1 1.1E+02 0.0036 18.7 3.2 35 87-122 16-51 (82)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=2.1e-29 Score=213.85 Aligned_cols=152 Identities=10% Similarity=0.042 Sum_probs=126.0
Q ss_pred HHHHHHHHhhhhchhhHHHHHHHHHhcCC---------HhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 029406 22 FDRFIKSHVSRLLKSDLVSVLAEFQRQDQ---------VFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQ 92 (194)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 92 (194)
+...|....-.+....|+++|.+|++.+. ++.|.++|++|+ ..|+.||..|||+||.+|++.|++++|.+
T Consensus 48 lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~-~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~ 126 (501)
T 4g26_A 48 LYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI-VDKVVPNEATFTNGARLAVAKDDPEMAFD 126 (501)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 44444444444555678888888887654 677888999998 78889999999999999999999999999
Q ss_pred HHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 93 VWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 93 l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
+|++|.+.|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++||++|++.|+ .++|.++|++|
T Consensus 127 l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~-----~d~A~~ll~~M 201 (501)
T 4g26_A 127 MVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKN-----ADKVYKTLQRL 201 (501)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHH
T ss_pred HHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCC-----HHHHHHHHHHH
Confidence 9999998899999999999999999999999999999999888999999999999999998888 88889999988
Q ss_pred cccCCch
Q 029406 173 IVYDPPE 179 (194)
Q Consensus 173 ~~~~~~~ 179 (194)
...+..+
T Consensus 202 r~~g~~p 208 (501)
T 4g26_A 202 RDLVRQV 208 (501)
T ss_dssp HHHTSSB
T ss_pred HHhCCCc
Confidence 7655443
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=8.2e-29 Score=210.25 Aligned_cols=158 Identities=15% Similarity=0.179 Sum_probs=133.9
Q ss_pred CchhHHHHHHHHhhhhch-hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCC---------H
Q 029406 18 HPVRFDRFIKSHVSRLLK-SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKK---------V 87 (194)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~---------~ 87 (194)
+.+.+.+.++.......+ ..+..+|++|++.|++++|+++|++|+ +.|+.||..|||+||.+|++.+. +
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~-~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEAR-RNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHH-HHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 334555555555444444 346788999999999999999999999 79999999999999999998765 7
Q ss_pred HHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhh
Q 029406 88 VEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLE 167 (194)
Q Consensus 88 ~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~ 167 (194)
++|.++|++|...|+.||..|||+||.+|++.|++++|..+|++|.+.|+.||..||++||.+|++.|+ .+.|.+
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~-----~~~A~~ 161 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGD-----ADKAYE 161 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC-----HHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCC-----HHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred hcccccccCCchhh
Q 029406 168 LFPDMIVYDPPEDL 181 (194)
Q Consensus 168 ~~~~m~~~~~~~~~ 181 (194)
+|++|...|+.||.
T Consensus 162 l~~~M~~~G~~Pd~ 175 (501)
T 4g26_A 162 VDAHMVESEVVPEE 175 (501)
T ss_dssp HHHHHHHTTCCCCH
T ss_pred HHHHHHhcCCCCCH
Confidence 99999998888873
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.93 E-value=1.7e-25 Score=198.83 Aligned_cols=134 Identities=15% Similarity=0.087 Sum_probs=123.3
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHh--hcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRK--EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~--~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li 113 (194)
..|+++|++||+.|++++|.++|+.|.+ ..|+.||+.|||+||++||+.|++++|.++|++|.+.|+.||.+|||+||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 4588999999999999999999999862 35899999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCh-HHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 114 RAFSDSGLP-SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 114 ~~~~~~g~~-~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
++||+.|+. +.|.++|++|.++|+.||..||++++.++. ++.+++.+.++...+..
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e-----R~~vL~~Vrkv~P~f~p 264 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED-----RATVLKAVHKVKPTFSL 264 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH-----HHHHHHHHGGGCCCCCC
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh-----HHHHHHHHHHhCcccCC
Confidence 999999985 789999999999999999999999988777 66779998888886654
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.86 E-value=6.4e-22 Score=176.04 Aligned_cols=110 Identities=8% Similarity=0.043 Sum_probs=101.8
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh---cCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHH
Q 029406 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKR---EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRV 146 (194)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ 146 (194)
-..|||+||++||+.|++++|..+|.+|.+ .|+.||.+|||+||+|||+.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 356999999999999999999999988874 58999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCchHHhHHHHHhhhcccccccCCchhhhh
Q 029406 147 ILKGLIPYPEFREKVKDDFLELFPDMIVYDPPEDLFE 183 (194)
Q Consensus 147 ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 183 (194)
||+++|+.|+. .+.|.++|++|...|..+|.+-
T Consensus 206 LI~glcK~G~~----~e~A~~Ll~EM~~kG~~PD~vt 238 (1134)
T 3spa_A 206 ALQCMGRQDQD----AGTIERCLEQMSQEGLKLQALF 238 (1134)
T ss_dssp HHHHHHHHTCC----HHHHHHHHHHHHHHTCCSHHHH
T ss_pred HHHHHHhCCCc----HHHHHHHHHHHHHcCCCCChhh
Confidence 99999998862 5788999999999999888554
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.35 E-value=2.3e-11 Score=103.36 Aligned_cols=135 Identities=7% Similarity=0.021 Sum_probs=108.5
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----CCCCC--HHhH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE----EVLFD--QHTF 109 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p~--~~ty 109 (194)
..+..+...|.+.|++++|.++|+.+.+ . .+.+..+|+.+..+|.+.|++++|..+|+++.+. +..|+ ..+|
T Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~ 519 (597)
T 2xpi_A 442 LPYLFLGMQHMQLGNILLANEYLQSSYA-L-FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATW 519 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH-H-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHH
Confidence 4466778888888899999999888873 2 3346888888889999999999999888888765 66777 7788
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCc
Q 029406 110 GDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 110 ~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
+.+..+|.+.|++++|..+|+.+.+.+ +.+..+|..+...|.+.|+ +++|.+.++.+....|.
T Consensus 520 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 520 ANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKI-----PGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCC-----HHHHHHHHHHHHhcCCC
Confidence 889999999999999999888887664 4477888888888888888 88888888877665543
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.33 E-value=3.4e-11 Score=102.33 Aligned_cols=135 Identities=6% Similarity=0.025 Sum_probs=118.9
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+..++.+|.+.|++++|.++|+.+.+ . .+.+..+|+.+..+|.+.|++++|.++|+++.+.. +.+..+|+.+..+
T Consensus 408 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 484 (597)
T 2xpi_A 408 PAWIGFAHSFAIEGEHDQAISAYTTAAR-L-FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVV 484 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH-T-TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 4577899999999999999999999973 2 34588999999999999999999999999998764 3478999999999
Q ss_pred HhcCCChHHHHHHHHHhHhC----CCCCC--hhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCc
Q 029406 116 FSDSGLPSEAMFIYNEMRSS----PATPI--SLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~----g~~p~--~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
|.+.|++++|..+|+.|.+. +..|+ ..+|..+..+|.+.|+ .++|.++++.+...+|.
T Consensus 485 ~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 485 AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM-----YDAAIDALNQGLLLSTN 548 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHSSC
T ss_pred HHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC-----HHHHHHHHHHHHHhCCC
Confidence 99999999999999999765 77888 7899999999999999 99999999988766553
No 7
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.97 E-value=2.9e-08 Score=66.90 Aligned_cols=131 Identities=10% Similarity=0.092 Sum_probs=107.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+..+...+...|++++|..+|+.+.+ . .+.+...+..+...+...|++++|..+|.++...+ +.+...+..+...|.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALE-L-DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH-c-CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34566778889999999999999973 2 23467888889999999999999999999988764 346778999999999
Q ss_pred cCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
..|++++|..+++.+.... +.+..++..+...+...|+ .+.|...+..+....|
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~-----~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGD-----YDEAIEYYQKALELDP 134 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC-----HHHHHHHHHHHHHHST
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHcc-----HHHHHHHHHHHHccCC
Confidence 9999999999999987652 3457788889999999999 8888888887655443
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.94 E-value=1.5e-07 Score=75.72 Aligned_cols=133 Identities=13% Similarity=0.101 Sum_probs=108.1
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+..+...+.+.|++++|...|+.+.+ . .+.+..+|+.+...|.+.|++++|...|+++.+.. +.+..+|+.+...
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIE-L-QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-T-CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh-h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 3455677788889999999999999873 2 22347788999999999999999999999988763 5578899999999
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
|.+.|++++|..+|+.+.+. .+.+..+|..+...+.+.|+ .++|.+.++.+....|
T Consensus 315 ~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGK-----LQEALMHYKEAIRISP 370 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTC-----CHHHHHHHHHHHTTCT
T ss_pred HHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhhCC
Confidence 99999999999999998765 34457889999999999999 8888888887765443
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.71 E-value=2.2e-06 Score=68.89 Aligned_cols=128 Identities=9% Similarity=0.035 Sum_probs=97.5
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhc
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 118 (194)
.+-..+...|++++|...|+.... +.| +..+++.+...|.+.|++++|...|.++.+.+ +.+..+|..+..+|.+
T Consensus 208 ~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 208 NLGNVLKEARIFDRAVAAYLRALS---LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh---hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 334444555666666666665542 234 47788888899999999999999999888753 2256789999999999
Q ss_pred CCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 119 SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
.|++++|..+|+.+.+. .+.+..+|..+...+.+.|+ .++|.+.++.+....|
T Consensus 284 ~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~al~~~p 336 (388)
T 1w3b_A 284 KGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGN-----IEEAVRLYRKALEVFP 336 (388)
T ss_dssp HSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTC-----HHHHHHHHHHHTTSCT
T ss_pred cCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhcCC
Confidence 99999999999998765 35677889999999999999 8888888887765543
No 10
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.70 E-value=1.1e-06 Score=64.52 Aligned_cols=130 Identities=7% Similarity=-0.066 Sum_probs=83.8
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHhcCCCCC-HHhHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARN-KKVVEAKQVWEDLKREEVLFD-QHTFGDIIR 114 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~l~~~m~~~g~~p~-~~ty~~li~ 114 (194)
.+..+...+...|++++|.+.|+.... . .+.+...+..+...|... |++++|...|.++...+..|+ ...|..+..
T Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~-~-~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 121 (225)
T 2vq2_A 44 AWLVRAEIYQYLKVNDKAQESFRQALS-I-KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGI 121 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH-h-CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHH
Confidence 344555666677777777777777752 1 223566677777777777 777777777777766333332 456777777
Q ss_pred HHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
+|...|++++|...|+.+.+.. +.+...+..+...+...|+ .+.|.+.++....
T Consensus 122 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~-----~~~A~~~~~~~~~ 175 (225)
T 2vq2_A 122 CSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ-----LGDADYYFKKYQS 175 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC-----HHHHHHHHHHHHH
Confidence 7777777777777777765541 2345666667777777777 6666666665543
No 11
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.69 E-value=4.3e-06 Score=62.87 Aligned_cols=114 Identities=12% Similarity=-0.003 Sum_probs=49.1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC-CHHhHHHHHHHHhc
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF-DQHTFGDIIRAFSD 118 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~ 118 (194)
.+...+...|++++|.+.|+...+ . .+.+...+..+-..|...|++++|..+|.++...+..| +...|..+...|..
T Consensus 76 ~la~~~~~~~~~~~A~~~~~~a~~-~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 153 (252)
T 2ho1_A 76 ALAVVFQTEMEPKLADEEYRKALA-S-DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ 153 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-H-CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH
Confidence 333444444555555555444431 1 11234444444444444555555555554444422222 23344444444444
Q ss_pred CCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCc
Q 029406 119 SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~ 156 (194)
.|++++|..+|+...+.. +.+..+|..+...+...|+
T Consensus 154 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 154 MKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKERE 190 (252)
T ss_dssp TTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCC
Confidence 455555544444443321 1223444444444444444
No 12
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.68 E-value=9.4e-07 Score=69.33 Aligned_cols=133 Identities=8% Similarity=-0.010 Sum_probs=79.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHH---HHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFY---RDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~---~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
+..+...+.+.|++++|.+.|+.+.+ . .|+.... ...+..+...|++++|..+|+++.+. .+.+...|+.+-.
T Consensus 133 ~~~l~~~~~~~g~~~~A~~~l~~~~~-~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~ 208 (291)
T 3mkr_A 133 MAMTVQILLKLDRLDLARKELKKMQD-Q--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAA 208 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh-h--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHH
Confidence 44455666677777777777777763 2 2442211 22334444456777777777777665 3456667777777
Q ss_pred HHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCch
Q 029406 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPE 179 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~ 179 (194)
+|.+.|++++|...|++..+.. +-+..++..+...+...|+. .+.+.++++......|..
T Consensus 209 ~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~----~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 209 CHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKP----PEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC----HHHHHHHHHHHHHHCTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHhCCCC
Confidence 7777777777777777765441 23455666666666666662 223455666555444443
No 13
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.67 E-value=2.9e-06 Score=63.83 Aligned_cols=136 Identities=10% Similarity=-0.026 Sum_probs=108.1
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
..+..+...+...|++++|...|+... ..+..| +...+..+-..|.+.|++++|...|.+..+.. +.+...+..+..
T Consensus 106 ~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 183 (252)
T 2ho1_A 106 RVLNNYGGFLYEQKRYEEAYQRLLEAS-QDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMAD 183 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT-TCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH-hCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHH
Confidence 345566777888999999999999987 333445 46778888889999999999999999887764 336788999999
Q ss_pred HHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCch
Q 029406 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPE 179 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~ 179 (194)
.|...|++++|..+|+...+. .+.+...+..+...+...|+ .+.|.++++.+....|..
T Consensus 184 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~-----~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 184 LLYKEREYVPARQYYDLFAQG-GGQNARSLLLGIRLAKVFED-----RDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHCTTS
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHccC-----HHHHHHHHHHHHHHCCCC
Confidence 999999999999999998765 24566778888888888899 888888888876655443
No 14
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.67 E-value=1.1e-06 Score=64.52 Aligned_cols=134 Identities=8% Similarity=-0.044 Sum_probs=110.7
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+..+...+...|++++|.+.|+...+ . .+.+...|..+-..|...|++++|...|.+..... +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALK-S-DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH-h-CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3455677788899999999999999973 2 23468889999999999999999999999998764 3477899999999
Q ss_pred HhcC-CChHHHHHHHHHhHhCCCCCC-hhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 116 FSDS-GLPSEAMFIYNEMRSSPATPI-SLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 116 ~~~~-g~~~~a~~l~~~M~~~g~~p~-~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
|... |++++|..+|+.+.+.+..|+ ...|..+...+...|+ .+.|.+.++.+....|
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~~~~~~~ 144 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ-----FGLAEAYLKRSLAAQP 144 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHST
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhCC
Confidence 9999 999999999999987433443 6788888899999999 8888888887765444
No 15
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.64 E-value=6.6e-07 Score=73.03 Aligned_cols=127 Identities=9% Similarity=-0.031 Sum_probs=104.0
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCC
Q 029406 42 LAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGL 121 (194)
Q Consensus 42 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 121 (194)
-..+...|++++|...|+.+.+ ..+.+...+..+..+|.+.|++++|..+|.++.+.. +.+..+|..+..+|...|+
T Consensus 150 a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 226 (450)
T 2y4t_A 150 ALNAFGSGDYTAAIAFLDKILE--VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGD 226 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 4457889999999999999973 234578899999999999999999999999998753 3478999999999999999
Q ss_pred hHHHHHHHHHhHhCCCCCC-hhhHHHH------------HHhhCCCCchHHhHHHHHhhhcccccccCCc
Q 029406 122 PSEAMFIYNEMRSSPATPI-SLPFRVI------------LKGLIPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 122 ~~~a~~l~~~M~~~g~~p~-~~ty~~l------------l~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
+++|..+|+.+... .|+ ...+..+ ...|...|+ .+.|.++|+.+....|.
T Consensus 227 ~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~A~~~~~~~l~~~p~ 289 (450)
T 2y4t_A 227 HELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGR-----YTDATSKYESVMKTEPS 289 (450)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhcCCc
Confidence 99999999999754 344 3444444 678888888 88899998887665443
No 16
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.63 E-value=2.3e-06 Score=67.12 Aligned_cols=125 Identities=9% Similarity=0.073 Sum_probs=102.4
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHh---HHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHT---FGDII 113 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t---y~~li 113 (194)
.+..+-..+...|++++|++.|+. +.+...+..+...|.+.|++++|...|+++.+.. |+... ...++
T Consensus 103 ~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~ 173 (291)
T 3mkr_A 103 FLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWV 173 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHH
Confidence 344555778899999999999886 4678899999999999999999999999998774 55332 23345
Q ss_pred HHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccC
Q 029406 114 RAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
..+...|++++|..+|+++.+. .+.+...|+.+..++.+.|+ +++|.+.++......
T Consensus 174 ~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~-----~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 174 SLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGR-----WEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHC
T ss_pred HHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhC
Confidence 5666779999999999999877 56788899999999999999 999999988865443
No 17
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.62 E-value=7.6e-07 Score=63.21 Aligned_cols=130 Identities=9% Similarity=-0.053 Sum_probs=108.0
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+..+...+...|++++|...|+...+ . .+.+...+..+...|...|++++|...|.+..... +.+...+..+...
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 119 (186)
T 3as5_A 43 DVALHLGIAYVKTGAVDRGTELLERSLA-D-APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVA 119 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHH
Confidence 3455677788889999999999999973 2 33468888999999999999999999999988763 4477889999999
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
|...|++++|..+++...... +.+..+|..+...+...|+ .+.|.+.++....
T Consensus 120 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~-----~~~A~~~~~~~~~ 172 (186)
T 3as5_A 120 LDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGR-----HEEALPHFKKANE 172 (186)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCC-----HHHHHHHHHHHHH
Confidence 999999999999999987652 4457888999999999999 8888888876644
No 18
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.59 E-value=4.1e-06 Score=68.28 Aligned_cols=132 Identities=11% Similarity=0.084 Sum_probs=101.8
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHH------------HHHHHhCCCHHHHHHHHHHHHhcCC
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDM------------LMMLARNKKVVEAKQVWEDLKREEV 102 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~l------------i~~~~~~g~~~~a~~l~~~m~~~g~ 102 (194)
..+..+...+...|++++|...|+.+.. ..|+ ...+..+ ...|.+.|++++|..+|.++...
T Consensus 212 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-- 286 (450)
T 2y4t_A 212 EAFYKISTLYYQLGDHELSLSEVRECLK---LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-- 286 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 4456777888889999999999999873 2343 4444444 78888899999999999988764
Q ss_pred CCC-----HHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 103 LFD-----QHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 103 ~p~-----~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
.|+ ...|..+..+|.+.|++++|...++.+... .+.+..+|..+...|...|+ .+.|.+.++......|
T Consensus 287 ~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~al~~~p 360 (450)
T 2y4t_A 287 EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPDNVNALKDRAEAYLIEEM-----YDEAIQDYETAQEHNE 360 (450)
T ss_dssp CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHTTSS
T ss_pred CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHhcC-----HHHHHHHHHHHHHhCc
Confidence 344 457888899999999999999999988665 24467889999999999999 8888888887765444
Q ss_pred c
Q 029406 178 P 178 (194)
Q Consensus 178 ~ 178 (194)
.
T Consensus 361 ~ 361 (450)
T 2y4t_A 361 N 361 (450)
T ss_dssp S
T ss_pred c
Confidence 3
No 19
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.55 E-value=1.5e-06 Score=61.71 Aligned_cols=131 Identities=8% Similarity=-0.099 Sum_probs=108.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+..+...+...|++++|...|+... ...+.+...+..+...|...|++++|...+.+..... +.+...|..+...|.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVY--DADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTC--CTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH--HhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4456667788999999999999986 2234578889999999999999999999999988763 347788999999999
Q ss_pred cCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
..|++++|..+|+..... .+.+...+..+...+...|+ .+.|.+.++......|
T Consensus 88 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~-----~~~A~~~~~~~~~~~~ 141 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGR-----FDEAIDSFKIALGLRP 141 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCc-----HHHHHHHHHHHHhcCc
Confidence 999999999999998765 34567888888899999999 8888888887655443
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.55 E-value=5.4e-06 Score=64.38 Aligned_cols=133 Identities=9% Similarity=-0.005 Sum_probs=109.1
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--------CCCCHHh
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE--------VLFDQHT 108 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--------~~p~~~t 108 (194)
.+..+-..+...|++++|.+.|+...+ ..+.+...+..+-..|.+.|++++|...|.+..... .+.+..+
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (330)
T 3hym_B 161 PMLYIGLEYGLTNNSKLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPL 238 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHH
Confidence 345567778889999999999999973 234568899999999999999999999999887632 1334678
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 109 FGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 109 y~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
|..+..+|.+.|++++|...|+...+.. +.+...|..+...+...|+ .+.|.+.++......|
T Consensus 239 ~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 239 LNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGN-----FENAVDYFHTALGLRR 301 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTC-----HHHHHHHHHTTTTTCS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhcc-----HHHHHHHHHHHHccCC
Confidence 9999999999999999999999987652 3467888999999999999 8999999888766554
No 21
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.55 E-value=6.3e-06 Score=61.29 Aligned_cols=132 Identities=8% Similarity=0.006 Sum_probs=92.2
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
.+..+...+...|++++|.+.|+...+ . .+.+...+..+-..|.+.|++++|...+.+..... +.+...+..+...|
T Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 169 (243)
T 2q7f_A 93 AYYGAGNVYVVKEMYKEAKDMFEKALR-A-GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCL 169 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-H-TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344556667777888888888887763 2 23456677777778888888888888888776553 23567777788888
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
.+.|++++|...|+...+.. +.+..+|..+...|...|+ .+.|.+.++......|
T Consensus 170 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~-----~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 170 ANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKEN-----REKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----TTHHHHHHHHHHHHCT
T ss_pred HHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccC-----HHHHHHHHHHHHccCc
Confidence 88888888888888775542 3346677777777877777 6777777776654443
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.53 E-value=6.1e-07 Score=71.20 Aligned_cols=127 Identities=9% Similarity=-0.015 Sum_probs=104.8
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCC
Q 029406 42 LAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGL 121 (194)
Q Consensus 42 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 121 (194)
+..+...|++++|...|+...+...-.++..++..+-..|.+.|++++|...|.+..... +.+..+|..+...|.+.|+
T Consensus 188 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~ 266 (368)
T 1fch_A 188 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQ 266 (368)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCC
Confidence 444558899999999999998433222358999999999999999999999999988763 3367899999999999999
Q ss_pred hHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccccc
Q 029406 122 PSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVY 175 (194)
Q Consensus 122 ~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~ 175 (194)
+++|...|+...+.. +.+..+|..+...|.+.|+ .+.|.+.++.....
T Consensus 267 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~al~~ 314 (368)
T 1fch_A 267 SEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGA-----HREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHh
Confidence 999999999987652 4457889999999999999 88888888776543
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.51 E-value=8.9e-06 Score=63.05 Aligned_cols=130 Identities=8% Similarity=-0.083 Sum_probs=107.4
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+..+...+.+.|++++|...|+...+ . .+.+...|..+-..|.+.|++++|...|.+..+.. +.+..+|..+..+
T Consensus 173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 173 QLHASLGVLYNLSNNYDSAAANLRRAVE-L-RPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVS 249 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH-h-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 4456677888899999999999999973 2 23468899999999999999999999999987754 3367899999999
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCC-----------ChhhHHHHHHhhCCCCchHHhHHHHHhhhccccc
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATP-----------ISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p-----------~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
|.+.|++++|...|+......-.. +..+|..+...+...|+ .+.|..+++...
T Consensus 250 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~l 313 (327)
T 3cv0_A 250 YSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR-----PDLVELTYAQNV 313 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC-----HHHHHHHTTCCS
T ss_pred HHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHH
Confidence 999999999999999886542111 46788899999999999 889988887543
No 24
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.48 E-value=4.1e-06 Score=62.33 Aligned_cols=133 Identities=12% Similarity=0.025 Sum_probs=108.6
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 35 KSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 35 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
...+..+...+...|++++|...|+...+ . .+.+...+..+-..|...|++++|..+|.+..+.. +.+...+..+..
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 133 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALE-L-DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGT 133 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-c-CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455677788889999999999999973 2 23468889999999999999999999999988764 346788999999
Q ss_pred HHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccC
Q 029406 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
.|.+.|++++|..+++...+. .+.+...+..+...+...|+ .+.|.+.++......
T Consensus 134 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~~~~~~ 189 (243)
T 2q7f_A 134 VLVKLEQPKLALPYLQRAVEL-NENDTEARFQFGMCLANEGM-----LDEALSQFAAVTEQD 189 (243)
T ss_dssp HHHHTSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTC-----CHHHHHHHHHHHHHC
T ss_pred HHHHhccHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhC
Confidence 999999999999999998765 23467788888889998898 788888877765443
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.46 E-value=3.5e-08 Score=81.95 Aligned_cols=84 Identities=11% Similarity=-0.002 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHH
Q 029406 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148 (194)
Q Consensus 69 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll 148 (194)
|+..+|+.+-..|...|++++|..+|..+ ..|..+..++++.|+++.|.+.+..+ .+..||..++
T Consensus 120 pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~ 184 (449)
T 1b89_A 120 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 184 (449)
T ss_dssp C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHH
Confidence 34445555555555555555555555544 24666666666666666666666665 2567777777
Q ss_pred HhhCCCCchHHhHHHHHhhhcccc
Q 029406 149 KGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 149 ~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
.+|+..|+ ++.|......+
T Consensus 185 ~aCv~~~e-----f~lA~~~~l~L 203 (449)
T 1b89_A 185 FACVDGKE-----FRLAQMCGLHI 203 (449)
T ss_dssp HHHHHTTC-----HHHHHHTTTTT
T ss_pred HHHHHcCc-----HHHHHHHHHHH
Confidence 77777777 77776665543
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.44 E-value=6.6e-06 Score=65.40 Aligned_cols=64 Identities=13% Similarity=0.032 Sum_probs=37.6
Q ss_pred CHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 105 DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 105 ~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
+..+|..+...|.+.|++++|..+|+...+. .+.+..+|..+...|...|+ .+.|.+.++....
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~al~ 275 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTV-RPEDYSLWNRLGATLANGDR-----SEEAVEAYTRALE 275 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHh
Confidence 4556666666666666666666666665543 13345566666666666666 5556655555443
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.43 E-value=7.8e-07 Score=70.86 Aligned_cols=126 Identities=8% Similarity=-0.065 Sum_probs=101.6
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCC
Q 029406 42 LAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGL 121 (194)
Q Consensus 42 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 121 (194)
...+.+.|++++|...|+...+...-.++...|..+-..|.+.|++++|...|.+..+.. +.+..+|+.+..+|.+.|+
T Consensus 184 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 262 (365)
T 4eqf_A 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDR 262 (365)
T ss_dssp -----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 557778899999999999998433222368899999999999999999999999988763 3478899999999999999
Q ss_pred hHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 122 PSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 122 ~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
+++|...|+...+. .+.+..+|..+...|...|+ .++|.+.++....
T Consensus 263 ~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~al~ 309 (365)
T 4eqf_A 263 SEEAVEAYTRALEI-QPGFIRSRYNLGISCINLGA-----YREAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTC-----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCC-----HHHHHHHHHHHHH
Confidence 99999999998765 23457889999999999999 7777777776543
No 28
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.43 E-value=6.9e-06 Score=62.27 Aligned_cols=128 Identities=9% Similarity=-0.098 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+..+-..+...|++++|...|+...+ . .+.+...|..+-..|...|++++|...|.+..... +.+...|..+...
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~-~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~ 120 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALA-I-RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA 120 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH-c-CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHH
Confidence 3455667777788999999999888873 2 23357888888888888999999999988887753 2356788888888
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccc
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
|.+.|++++|...|+.+.+. .|+...+..++..+...|+ .+.|...+....
T Consensus 121 ~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~-----~~~A~~~~~~~~ 171 (275)
T 1xnf_A 121 LYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLD-----EKQAKEVLKQHF 171 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHC-----HHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcC-----HHHHHHHHHHHH
Confidence 88999999999988888664 3444444444444444455 666666665443
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.41 E-value=2.3e-05 Score=61.96 Aligned_cols=133 Identities=11% Similarity=0.035 Sum_probs=94.8
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---------------
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE--------------- 101 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--------------- 101 (194)
.+..+-..+...|++++|...|+...+ . .+.+...+..+...|...|++++|...|.++....
T Consensus 100 ~~~~l~~~~~~~g~~~~A~~~~~~al~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (368)
T 1fch_A 100 AWQYLGTTQAENEQELLAISALRRCLE-L-KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG 177 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-------
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhh
Confidence 344556666677777777777777762 2 23356677777777777777777777776655422
Q ss_pred --------------------------------CCC---CHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHH
Q 029406 102 --------------------------------VLF---DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRV 146 (194)
Q Consensus 102 --------------------------------~~p---~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ 146 (194)
..| +..+|..+...|.+.|++++|...|+..... .+.+..+|..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~ 256 (368)
T 1fch_A 178 GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-RPNDYLLWNK 256 (368)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHH
T ss_pred hhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCCHHHHHH
Confidence 112 4778888999999999999999999988665 2345678888
Q ss_pred HHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 147 ILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 147 ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
+...+...|+ .+.|.+.++......|
T Consensus 257 l~~~~~~~g~-----~~~A~~~~~~al~~~~ 282 (368)
T 1fch_A 257 LGATLANGNQ-----SEEAVAAYRRALELQP 282 (368)
T ss_dssp HHHHHHHTTC-----HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCC-----HHHHHHHHHHHHHhCC
Confidence 8888998998 8888888877655443
No 30
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.40 E-value=3.9e-05 Score=54.97 Aligned_cols=133 Identities=8% Similarity=-0.041 Sum_probs=107.1
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+..+-..+.+.|++++|...+..... ..+-+...+..+-..+...++++.|...+.+..... +-+...+..+-..
T Consensus 40 ~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~ 116 (184)
T 3vtx_A 40 ETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLV 116 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 4456677788889999999999999863 233456777777888889999999999999887653 3367889999999
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
|.+.|++++|...|+...+.. +-+..+|..+-..|.+.|+ .++|.+.|+......|
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~-----~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 117 YDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGL-----RDEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHTTH
T ss_pred HHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCC-----HHHHHHHHHHHHhCCc
Confidence 999999999999999987652 4457788999999999999 8888888887655443
No 31
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.38 E-value=3.3e-05 Score=57.52 Aligned_cols=114 Identities=9% Similarity=-0.074 Sum_probs=60.9
Q ss_pred CCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHH
Q 029406 49 DQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127 (194)
Q Consensus 49 ~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 127 (194)
|++++|...|+...+ +.| +...|..+=.+|...|++++|+..|++..+.. .+...+..+-.+|...|++++|..
T Consensus 98 g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~ 172 (217)
T 2pl2_A 98 GYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALA 172 (217)
T ss_dssp HHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666652 223 35555556666666666777766666666655 466666666666666677777766
Q ss_pred HHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccc
Q 029406 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 128 l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
.|+...+. -+-+...+..+...+...|+ .++|.+.++..+
T Consensus 173 ~~~~al~~-~P~~~~~~~~la~~~~~~g~-----~~~A~~~~~~~~ 212 (217)
T 2pl2_A 173 QYAKALEQ-APKDLDLRVRYASALLLKGK-----AEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHH-STTCHHHHHHHHHHHTC--------------------
T ss_pred HHHHHHHh-CCCChHHHHHHHHHHHHccC-----HHHHHHHHHHHh
Confidence 66666543 12345556666666666666 666666665543
No 32
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.37 E-value=1.8e-05 Score=52.16 Aligned_cols=97 Identities=9% Similarity=0.067 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+..+...+...|+++.|.+.|+...+ . .+.+...+..+...+.+.|++++|..+|.++.... +.+..++..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALE-L-DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-H-CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3455667778889999999999999973 2 23467888999999999999999999999988753 3477889999999
Q ss_pred HhcCCChHHHHHHHHHhHhC
Q 029406 116 FSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~ 135 (194)
|...|++++|...|+.+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999988664
No 33
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.37 E-value=1.8e-05 Score=61.38 Aligned_cols=127 Identities=7% Similarity=-0.127 Sum_probs=85.5
Q ss_pred HHHHHHHHHhcC-CHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 38 LVSVLAEFQRQD-QVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 38 ~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
+..+-..+...| ++++|...|+.... . .+.+...|..+-..|...|++++|...|.+..... +.+...+..+...|
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 169 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKATT-L-EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEY 169 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHT-T-CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH-h-CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHH
Confidence 445555666667 77777777777762 2 22346667777777777778888877777776553 22345566677777
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccc
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
...|++++|..+|+...+.. +.+..++..+...+...|+ .+.|...++...
T Consensus 170 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~a~ 220 (330)
T 3hym_B 170 GLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGE-----WKTAEKWFLDAL 220 (330)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccc-----HHHHHHHHHHHH
Confidence 77788888888777776552 3456677777777777777 777777766553
No 34
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.35 E-value=2.3e-05 Score=57.41 Aligned_cols=127 Identities=9% Similarity=-0.106 Sum_probs=89.6
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 119 (194)
.+-..+...|++++|...|+.. +.|+...|..+-..|.+.|++++|...|.+..... +.+...|..+-.+|...
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 3444566778888888887765 34677788888888888888888888888777653 33667788888888888
Q ss_pred CChHHHHHHHHHhHhCC--------------CCC-ChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 120 GLPSEAMFIYNEMRSSP--------------ATP-ISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 120 g~~~~a~~l~~~M~~~g--------------~~p-~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
|++++|...|+...+.. ..| ....|..+-..+...|+ .+.|.+.++......|
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE-----WKKAEEQLALATSMKS 152 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC-----HHHHHHHHHHHHHcCc
Confidence 88888888888776541 111 12566777777777888 7777777666555444
No 35
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.35 E-value=1.6e-05 Score=60.31 Aligned_cols=134 Identities=11% Similarity=-0.041 Sum_probs=94.0
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD--MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li 113 (194)
..+..+-..+...|++++|.+.|+... .....|+ ...|..+-..|...|++++|+..|.+..+.. +-+..+|..+-
T Consensus 38 ~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 115 (272)
T 3u4t_A 38 YIYNRRAVCYYELAKYDLAQKDIETYF-SKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIG 115 (272)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHH-TTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH-hccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHH
Confidence 355666677888888888888888887 3332222 3457788888888888888888888887653 22556788888
Q ss_pred HHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHH-HhhCCCCchHHhHHHHHhhhcccccccCCc
Q 029406 114 RAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL-KGLIPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll-~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
..|...|++++|...|+...+. .+.+...|..+. ..|. .++ .+.|.+.++......|.
T Consensus 116 ~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~-~~~-----~~~A~~~~~~a~~~~p~ 174 (272)
T 3u4t_A 116 SYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYY-NKE-----YVKADSSFVKVLELKPN 174 (272)
T ss_dssp HHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHH-TTC-----HHHHHHHHHHHHHHSTT
T ss_pred HHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHH-HHH-----HHHHHHHHHHHHHhCcc
Confidence 8888888888888888887665 233455666665 4443 446 78888888777655443
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.35 E-value=4e-06 Score=62.81 Aligned_cols=138 Identities=10% Similarity=-0.037 Sum_probs=108.6
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHhh-cCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--------
Q 029406 35 KSDLVSVLAEFQRQDQVFLCMKLYDVVRKE-IWYRPD----MFFYRDMLMMLARNKKVVEAKQVWEDLKREE-------- 101 (194)
Q Consensus 35 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-------- 101 (194)
...+..+-..+...|++++|...|+...+. ....|+ ...|..+-..|.+.|++++|...|.+.....
T Consensus 38 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 117 (258)
T 3uq3_A 38 ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTK 117 (258)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHH
Confidence 455667778888899999999999988631 112223 5788899999999999999999999888732
Q ss_pred ----------------CC-CCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHH
Q 029406 102 ----------------VL-FDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDD 164 (194)
Q Consensus 102 ----------------~~-p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~ 164 (194)
.. .+...|..+...|...|++++|...|+...+.. +.+..+|..+...+...|+ .+.
T Consensus 118 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~-----~~~ 191 (258)
T 3uq3_A 118 LRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMS-----FPE 191 (258)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHH
T ss_pred HhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCC-----HHH
Confidence 22 245678888899999999999999999998873 4467888889999999999 888
Q ss_pred HhhhcccccccCCc
Q 029406 165 FLELFPDMIVYDPP 178 (194)
Q Consensus 165 a~~~~~~m~~~~~~ 178 (194)
|...++......|.
T Consensus 192 A~~~~~~al~~~~~ 205 (258)
T 3uq3_A 192 AIADCNKAIEKDPN 205 (258)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCHH
Confidence 88888877655443
No 37
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.32 E-value=4.3e-06 Score=63.40 Aligned_cols=125 Identities=6% Similarity=-0.110 Sum_probs=103.4
Q ss_pred hcCCHhHHHHHHHHHHhhcCC-C--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChH
Q 029406 47 RQDQVFLCMKLYDVVRKEIWY-R--PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123 (194)
Q Consensus 47 ~~~~~~~a~~~~~~m~~~~~~-~--p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 123 (194)
..+++++|+..|+.+.+ ... . .+...|..+-..|...|++++|...|.+..... +.+..+|..+...|...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILA-SRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHT-SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHh-cccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 45889999999999983 321 1 246788899999999999999999999998764 336889999999999999999
Q ss_pred HHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCch
Q 029406 124 EAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPE 179 (194)
Q Consensus 124 ~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~ 179 (194)
+|..+|+...+. .+.+..+|..+...+...|+ .+.|.+.++.+....|..
T Consensus 95 ~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~a~~~~~~~ 144 (275)
T 1xnf_A 95 AAYEAFDSVLEL-DPTYNYAHLNRGIALYYGGR-----DKLAQDDLLAFYQDDPND 144 (275)
T ss_dssp HHHHHHHHHHHH-CTTCTHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhc-CccccHHHHHHHHHHHHhcc-----HHHHHHHHHHHHHhCCCC
Confidence 999999998775 23457889999999999999 889999988876655443
No 38
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.32 E-value=5.4e-05 Score=58.52 Aligned_cols=97 Identities=9% Similarity=-0.003 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHh
Q 029406 71 MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG 150 (194)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~ 150 (194)
...+..+-..|.+.|++++|...|.+..... +.+..+|..+...|...|++++|...|+...+.. +.+..+|..+...
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVS 249 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 3444445555555555555555555554432 2244555555555555566666655555554431 2234455555555
Q ss_pred hCCCCchHHhHHHHHhhhcccccc
Q 029406 151 LIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 151 ~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
+...|+ .+.|.+.++....
T Consensus 250 ~~~~g~-----~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 250 YSNMSQ-----YDLAAKQLVRAIY 268 (327)
T ss_dssp HHHTTC-----HHHHHHHHHHHHH
T ss_pred HHHhcc-----HHHHHHHHHHHHH
Confidence 555555 5555555554443
No 39
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.31 E-value=0.00015 Score=48.09 Aligned_cols=97 Identities=9% Similarity=0.055 Sum_probs=81.7
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+..+...+...|++++|...|+.... . .+.+...+..+...+...|++++|..+|.++.... +.+..++..+...
T Consensus 36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 112 (136)
T 2fo7_A 36 EAWYNLGNAYYKQGDYDEAIEYYQKALE-L-DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNA 112 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHH-H-CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3455677778889999999999999973 2 24467888999999999999999999999998764 3467889999999
Q ss_pred HhcCCChHHHHHHHHHhHhC
Q 029406 116 FSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~ 135 (194)
|.+.|++++|...|..+...
T Consensus 113 ~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 113 YYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHcc
Confidence 99999999999999988653
No 40
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.29 E-value=6.1e-07 Score=74.52 Aligned_cols=114 Identities=13% Similarity=0.169 Sum_probs=40.9
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 35 KSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 35 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
+..+..++..+...|++++|+..++..++ ..++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+-.
T Consensus 61 ~~~y~~V~~~ae~~g~~EeAi~yl~~ark---~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd 130 (449)
T 1b89_A 61 PSSYMEVVQAANTSGNWEELVKYLQMARK---KARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGD 130 (449)
T ss_dssp ---------------------------------------------------CHHHHTTTTT-------CC----------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHH
Confidence 44677788888888999999887776662 24567888889999999999988888885 377788999999
Q ss_pred HHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
.|...|.+++|..+|..+ ..|..+..++++.|+ .+.|.+.+..+
T Consensus 131 ~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~-----yq~AVea~~KA 174 (449)
T 1b89_A 131 RCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGE-----YQAAVDGARKA 174 (449)
T ss_dssp ------CTTTHHHHHHHT---------TCHHHHHHHHHTTTC-----HHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhcc-----HHHHHHHHHHc
Confidence 999999999999999876 588889999999998 77777777755
No 41
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.29 E-value=4.2e-05 Score=56.79 Aligned_cols=135 Identities=9% Similarity=-0.039 Sum_probs=102.5
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+...-..+...|++++|...|+... .....++...+..+-..|.+.|++++|+..|.+..+.. +-+...|..+-..
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 85 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYL-KLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH-hccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHH
Confidence 344555566778899999999999987 34433677777778888889999999999999887653 2256788889999
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCCh-------hhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCc
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPIS-------LPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~-------~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
|...|++++|...|+...+.. +-+. ..|..+-..+...|+ .++|.+.++......|.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGN-----IEKAEENYKHATDVTSK 149 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHTTSSCH
T ss_pred HHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhcc-----HHHHHHHHHHHHhcCCC
Confidence 999999999999999876641 2223 456666677778888 88888888877666554
No 42
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.28 E-value=6.1e-05 Score=58.84 Aligned_cols=132 Identities=11% Similarity=0.019 Sum_probs=105.0
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCC----CHHHHHHH------------HHHHHhCCCHHHHHHHHHHHHh
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP----DMFFYRDM------------LMMLARNKKVVEAKQVWEDLKR 99 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p----~~~~~~~l------------i~~~~~~g~~~~a~~l~~~m~~ 99 (194)
..+..+-..+...|++++|...|+...+ ..| +...+..+ -..+...|++++|..+|.++..
T Consensus 72 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 148 (359)
T 3ieg_A 72 AARLQRGHLLLKQGKLDEAEDDFKKVLK---SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE 148 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4455677788889999999999999973 345 34444444 4788899999999999999887
Q ss_pred cCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 100 ~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
.. +.+...+..+...|...|++++|...++..... .+.+..+|..+...+...|+ .+.|.+.++......|
T Consensus 149 ~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~-----~~~A~~~~~~a~~~~~ 219 (359)
T 3ieg_A 149 VC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGD-----HELSLSEVRECLKLDQ 219 (359)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHCT
T ss_pred hC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhhCc
Confidence 54 347788999999999999999999999998776 24567888899999999999 8888888877655443
No 43
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.28 E-value=1.3e-05 Score=59.90 Aligned_cols=134 Identities=11% Similarity=0.029 Sum_probs=107.2
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcC-----------------------CCC-CHHHHHHHHHHHHhCCCHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIW-----------------------YRP-DMFFYRDMLMMLARNKKVVEAK 91 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-----------------------~~p-~~~~~~~li~~~~~~g~~~~a~ 91 (194)
..+..+-..+...|++++|...|+....... ..| +...|..+-..+...|++++|.
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 159 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAV 159 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHH
Confidence 3455677778889999999999999873110 223 3567888888999999999999
Q ss_pred HHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccc
Q 029406 92 QVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 92 ~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~ 171 (194)
..|.+..... +.+..+|..+..+|.+.|++++|...|+...+.. +.+..+|..+...+...|+ .+.|.+.++.
T Consensus 160 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~ 232 (258)
T 3uq3_A 160 KAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKE-----YASALETLDA 232 (258)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHH
T ss_pred HHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhh-----HHHHHHHHHH
Confidence 9999998764 3378899999999999999999999999987652 4457888899999999999 8888888876
Q ss_pred ccccC
Q 029406 172 MIVYD 176 (194)
Q Consensus 172 m~~~~ 176 (194)
.....
T Consensus 233 a~~~~ 237 (258)
T 3uq3_A 233 ARTKD 237 (258)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 65433
No 44
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.26 E-value=2.9e-05 Score=64.03 Aligned_cols=128 Identities=9% Similarity=-0.018 Sum_probs=88.2
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
.+..+...+...|++++|...|+...+ .. |+...|..+...|...|++++|...|.+..... +.+..+|..+...|
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~-~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIE-LF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHH-HC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh-hC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHH
Confidence 344566667777888888888887763 22 336777777777777888888888777776543 23556777777777
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
...|++++|...|+...+.. +.+..+|..+...+...|+ .+.|...++....
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~~~~ 366 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENK-----FDDCETLFSEAKR 366 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTC-----HHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHH
Confidence 77888888888777776542 3345677777777777777 6666666666543
No 45
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.25 E-value=6e-05 Score=56.05 Aligned_cols=132 Identities=9% Similarity=-0.083 Sum_probs=108.8
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHhcCCCC
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARN-----------KKVVEAKQVWEDLKREEVLF 104 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-----------g~~~~a~~l~~~m~~~g~~p 104 (194)
..+..+-..+.+.|++++|...|+...+ . -+-+...+..+=..|.+. |++++|+..|++..+.. +-
T Consensus 40 ~a~~~lg~~~~~~g~~~~A~~~~~~al~-~-~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~ 116 (217)
T 2pl2_A 40 EALYWLARTQLKLGLVNPALENGKTLVA-R-TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PR 116 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cc
Confidence 4455666778889999999999999973 2 223577888888889999 99999999999988753 22
Q ss_pred CHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 105 DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 105 ~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
+...|..+-.+|...|++++|...|+...+.. .+...+..+-..+...|+ .++|...++......|
T Consensus 117 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al~~~P 182 (217)
T 2pl2_A 117 YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGR-----LDEALAQYAKALEQAP 182 (217)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHST
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhCC
Confidence 67789999999999999999999999987776 678889999999999999 8888888887655444
No 46
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.25 E-value=4.6e-05 Score=54.55 Aligned_cols=132 Identities=10% Similarity=-0.022 Sum_probs=108.0
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
..+..+=..+.+.|++++|++.|+...+ +.| +...|..+-..|.+.|++++|...+.......-. +...+..+-.
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLK---ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 3456667778889999999999999973 234 5788999999999999999999999998766433 6778888889
Q ss_pred HHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
.+...++++.+...+...... .+-+...+..+-..+.+.|+ .++|.+.|+......|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~-~~~~~~~~~~lg~~~~~~g~-----~~~A~~~~~~~l~~~p 138 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL-NTVYADAYYKLGLVYDSMGE-----HDKAIEAYEKTISIKP 138 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHCT
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHhCC-----chhHHHHHHHHHHhcc
Confidence 999999999999999987664 23456788888889999999 8888888887765444
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.24 E-value=0.00038 Score=52.94 Aligned_cols=81 Identities=6% Similarity=-0.045 Sum_probs=37.4
Q ss_pred cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhc----C
Q 029406 48 QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLAR----NKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD----S 119 (194)
Q Consensus 48 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~----~ 119 (194)
.+++++|...|+... ..+ +...+..+=..|.. .+++++|+..|.+..+.+ +...+..+-..|.. .
T Consensus 55 ~~~~~~A~~~~~~a~-~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~ 127 (273)
T 1ouv_A 55 EKNLKKAASFYAKAC-DLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVT 127 (273)
T ss_dssp CCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSC
T ss_pred CCCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcc
Confidence 445555555554444 222 34444444444444 445555555554444443 34444444444444 4
Q ss_pred CChHHHHHHHHHhHhC
Q 029406 120 GLPSEAMFIYNEMRSS 135 (194)
Q Consensus 120 g~~~~a~~l~~~M~~~ 135 (194)
+++++|..+|+...+.
T Consensus 128 ~~~~~A~~~~~~a~~~ 143 (273)
T 1ouv_A 128 RDFKKAVEYFTKACDL 143 (273)
T ss_dssp CCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHhc
Confidence 4455555544444443
No 48
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.24 E-value=0.0001 Score=57.51 Aligned_cols=128 Identities=9% Similarity=-0.025 Sum_probs=100.1
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCC
Q 029406 42 LAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGL 121 (194)
Q Consensus 42 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 121 (194)
...+...|+++.|.+.|+...+. .+.+...+..+-..|...|++++|...+.+..... +.+..+|..+...|...|+
T Consensus 127 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 203 (359)
T 3ieg_A 127 ALDAFDGADYTAAITFLDKILEV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGD 203 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHccCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 46778899999999999999732 34568889999999999999999999999998764 4478899999999999999
Q ss_pred hHHHHHHHHHhHhCCCCCChhhHHH------------HHHhhCCCCchHHhHHHHHhhhcccccccCCc
Q 029406 122 PSEAMFIYNEMRSSPATPISLPFRV------------ILKGLIPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 122 ~~~a~~l~~~M~~~g~~p~~~ty~~------------ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
+++|...|+...+.. +.+..++.. +...+.+.|+ .+.|.+.++......|.
T Consensus 204 ~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-----~~~A~~~~~~~~~~~~~ 266 (359)
T 3ieg_A 204 HELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGR-----YTDATSKYESVMKTEPS 266 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhcCCC
Confidence 999999999987642 222333322 2455778888 88888888876554443
No 49
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.20 E-value=4.2e-05 Score=63.60 Aligned_cols=128 Identities=9% Similarity=-0.002 Sum_probs=82.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+..+-..+...|+++.|...|+...+ . .+.+...|..+-..|...|++++|...|.+..... +-+...|..+...|.
T Consensus 279 ~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 355 (537)
T 3fp2_A 279 YIFLALTLADKENSQEFFKFFQKAVD-L-NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLY 355 (537)
T ss_dssp HHHHHHHTCCSSCCHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhc-c-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34445555566777777777777752 1 22346667777777777777777777777776543 224456777777777
Q ss_pred cCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
..|++++|..+|+...+.. +.+...|..+...+...|+ .+.|.+.++....
T Consensus 356 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 356 KQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGD-----FDTAIKQYDIAKR 406 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC-----HHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCC-----HHHHHHHHHHHHH
Confidence 7777777777777765542 3345566777777777777 7777777666544
No 50
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.19 E-value=1.4e-05 Score=60.37 Aligned_cols=134 Identities=10% Similarity=0.107 Sum_probs=104.2
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhc-----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc------C-C
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEI-----WYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKRE------E-V 102 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------g-~ 102 (194)
..+..+-..+...|++++|...|+...+.. +-.| ...+|+.+-..|...|++++|...|.+.... . -
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 345567777888999999999999986321 2223 4668899999999999999999999988754 1 1
Q ss_pred CCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC------CCCC-ChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 103 LFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS------PATP-ISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 103 ~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~------g~~p-~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
+....+|..+-..|...|++++|..+|+...+. +..| ...++..+...|...|+ .+.|.+.++....
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~~l~ 197 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK-----YQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHH
Confidence 234678999999999999999999999988654 2233 35688888899999999 8888888776643
No 51
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.18 E-value=2.6e-05 Score=59.90 Aligned_cols=134 Identities=10% Similarity=0.082 Sum_probs=104.0
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhc-----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc------CC-
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEI-----WYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKRE------EV- 102 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------g~- 102 (194)
..+..+-..+...|++++|...|+...... +-.| ....+..+-..|...|++++|...|.+.... +-
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 149 (311)
T 3nf1_A 70 TMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH 149 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC
Confidence 345567777888999999999999986321 2223 4678888999999999999999999988764 22
Q ss_pred CCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC------CCCC-ChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 103 LFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS------PATP-ISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 103 ~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~------g~~p-~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
......+..+...|...|++++|..+|+..... +..| ...++..+...|...|+ .+.|.+.++....
T Consensus 150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al~ 223 (311)
T 3nf1_A 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK-----FKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHH
Confidence 234567889999999999999999999988653 2233 34678888889999999 8888888876654
No 52
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.16 E-value=6.4e-05 Score=61.95 Aligned_cols=95 Identities=14% Similarity=0.068 Sum_probs=82.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+...-..+.+.|++++|+..|+.+.+ .. |+...|..+..+|.+.|++++|...|.++.+.+ +.+..+|..+..+|.
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~-~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALE-LK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHH-HC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHh-cC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 44556678889999999999999984 33 899999999999999999999999999998764 446789999999999
Q ss_pred cCCChHHHHHHHHHhHhCC
Q 029406 118 DSGLPSEAMFIYNEMRSSP 136 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g 136 (194)
+.|++++|...|+.+...+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~ 103 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNG 103 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSS
T ss_pred HHhhHHHHHHHHHHHHhcC
Confidence 9999999999999886653
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.15 E-value=0.0007 Score=51.48 Aligned_cols=128 Identities=5% Similarity=-0.089 Sum_probs=92.4
Q ss_pred hhHHHHHHHHHh----cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCCCHH
Q 029406 36 SDLVSVLAEFQR----QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLAR----NKKVVEAKQVWEDLKREEVLFDQH 107 (194)
Q Consensus 36 ~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~ 107 (194)
..+..+-..+.. .+++++|+..|+... ..+ +...+..+=..|.. .+++++|+..|.+..+.+ +..
T Consensus 75 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~-~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~ 147 (273)
T 1ouv_A 75 NGCHLLGNLYYSGQGVSQNTNKALQYYSKAC-DLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGD 147 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHhCCCCcccCHHHHHHHHHHHH-HcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHH
Confidence 334445555666 888888888888887 343 66777777777877 888888888888887766 566
Q ss_pred hHHHHHHHHhc----CCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCC----CCchHHhHHHHHhhhcccccccCCc
Q 029406 108 TFGDIIRAFSD----SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIP----YPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 108 ty~~li~~~~~----~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~----~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
.+..+-..|.. .+++++|..+|+...+.+ +...+..+-..|.. .++ .++|.+.++.....+++
T Consensus 148 a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~-----~~~A~~~~~~a~~~~~~ 218 (273)
T 1ouv_A 148 GCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKN-----FKEALARYSKACELENG 218 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCC-----HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcc-----HHHHHHHHHHHHhCCCH
Confidence 77777777777 788888888888877664 34556666666666 777 77777777766555553
No 54
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.14 E-value=8.4e-05 Score=49.66 Aligned_cols=113 Identities=12% Similarity=-0.015 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+..+-..+...|+++.|...|+...+ -.+.+...+..+-..|...|++++|...|.+..+.. +.+...|..+-.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 4456677778889999999999999872 223468888889999999999999999999888753 3367889999999
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhC
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~ 152 (194)
|.+.|++++|...|+...... +-+...+..+...+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 999999999999999876541 223344444444443
No 55
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.14 E-value=0.00012 Score=48.49 Aligned_cols=115 Identities=10% Similarity=0.020 Sum_probs=90.2
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
.+..+-..+...|+++.|...|+.... . .+.+...+..+-..|...|++++|...+.+..... +.+...|..+-..|
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIE-L-NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH-c-CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 445666777889999999999999873 2 23468888999999999999999999999988753 33678899999999
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCC
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYP 155 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g 155 (194)
.+.|++++|...|+...... +.+...+..+...+...|
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 99999999999999986652 234556666655555444
No 56
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.12 E-value=1.8e-05 Score=60.89 Aligned_cols=133 Identities=8% Similarity=0.051 Sum_probs=104.1
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhc------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc------CC-C
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEI------WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE------EV-L 103 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------g~-~ 103 (194)
.+..+-..+...|++++|..+|+...+.. ........+..+-..|...|++++|...|.+.... +- .
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 35567778888999999999999987310 23334677888999999999999999999988764 22 3
Q ss_pred CCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC------CCCC-ChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 104 FDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS------PATP-ISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 104 p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~------g~~p-~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
....+|..+...|...|++++|..+|+...+. +-.| ....|..+...+...|+ .+.|.++++....
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-----~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK-----YEEVEYYYQRALE 181 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHH
Confidence 34678999999999999999999999988653 2233 35678888889999999 8888888776643
No 57
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.11 E-value=1.1e-05 Score=60.89 Aligned_cols=99 Identities=9% Similarity=0.043 Sum_probs=78.6
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhc-----CC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc------CCC
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEI-----WY-RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE------EVL 103 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~-~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------g~~ 103 (194)
..+..+-..+...|++++|...|+...+.. .. +.....+..+-..|...|++++|...|.+.... +-.
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 345567778888999999999999986321 11 234678888999999999999999999988765 222
Q ss_pred C-CHHhHHHHHHHHhcCCChHHHHHHHHHhHh
Q 029406 104 F-DQHTFGDIIRAFSDSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 104 p-~~~ty~~li~~~~~~g~~~~a~~l~~~M~~ 134 (194)
| ...++..+-..|.+.|++++|..+|+...+
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 456899999999999999999999998754
No 58
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.11 E-value=3.6e-05 Score=50.69 Aligned_cols=100 Identities=11% Similarity=0.101 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHh
Q 029406 71 MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG 150 (194)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~ 150 (194)
...|..+-..+...|++++|..+|.++.... +.+..++..+...|.+.|++++|..+|+.+.... +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 5678888899999999999999999998763 3467889999999999999999999999987652 4467788899999
Q ss_pred hCCCCchHHhHHHHHhhhcccccccCC
Q 029406 151 LIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 151 ~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
+...|+ .+.|...++.+....|
T Consensus 87 ~~~~~~-----~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 87 YYKQGD-----YDEAIEYYQKALELDP 108 (125)
T ss_dssp HHHTTC-----HHHHHHHHHHHHHHCT
T ss_pred HHHhcC-----HHHHHHHHHHHHHhCC
Confidence 999999 8889988887765544
No 59
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.10 E-value=0.00029 Score=53.19 Aligned_cols=132 Identities=9% Similarity=-0.037 Sum_probs=90.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC--CHHhHHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF--DQHTFGDIIRA 115 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p--~~~ty~~li~~ 115 (194)
+...-..+...|++++|...|+...+ . .+.+...+..+-..|...|++++|+..|.+....+-.| ....|..+-..
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~-~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEA-K-KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHH-T-TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH-h-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34455566778888888888888763 1 12234467777778888888888888888877743222 23347788888
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
|...|++++|...|+...+.. +-+..+|..+...|...|+ .+.|.+.++......|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~al~~~~ 139 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGN-----FPLAIQYMEKQIRPTT 139 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTC-----HHHHHHHHGGGCCSSC
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccC-----HHHHHHHHHHHhhcCC
Confidence 888888888888888776541 3345677777788888888 7777777777655433
No 60
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.08 E-value=9.5e-05 Score=61.43 Aligned_cols=130 Identities=11% Similarity=-0.040 Sum_probs=108.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+..+-..+...|++++|...|+...+ ..|+...|..+-..|...|++++|...|.+..... +.+..+|..+...|.
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESIN---LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHH
Confidence 34455567789999999999999983 45678889999999999999999999999988764 336788999999999
Q ss_pred cCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
..|++++|...|+...... +-+..+|..+...+...|+ .+.|.++++......|
T Consensus 322 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~~~~~~~ 375 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGK-----FTESEAFFNETKLKFP 375 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHCT
T ss_pred hcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhCC
Confidence 9999999999999987652 3346788899999999999 8888888887755443
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.07 E-value=6.5e-05 Score=62.77 Aligned_cols=131 Identities=9% Similarity=0.025 Sum_probs=104.4
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHhcCCCCCH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARN---------KKVVEAKQVWEDLKREEVLFDQ 106 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---------g~~~~a~~l~~~m~~~g~~p~~ 106 (194)
..+..+-..|.+.|++++|...|+...+ +.|+...+..+-..|... |++++|+..|.+..+.. +-+.
T Consensus 138 ~a~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 213 (474)
T 4abn_A 138 EAWNQLGEVYWKKGDVTSAHTCFSGALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDG 213 (474)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCH
Confidence 3455667778888999999999999873 457778888888888888 99999999999888764 3367
Q ss_pred HhHHHHHHHHhcC--------CChHHHHHHHHHhHhCCCC---CChhhHHHHHHhhCCCCchHHhHHHHHhhhccccccc
Q 029406 107 HTFGDIIRAFSDS--------GLPSEAMFIYNEMRSSPAT---PISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVY 175 (194)
Q Consensus 107 ~ty~~li~~~~~~--------g~~~~a~~l~~~M~~~g~~---p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~ 175 (194)
..|..+-.+|... |++++|...|+...+.. + -+...|..+-..|...|+ .++|.+.|+.....
T Consensus 214 ~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~-----~~~A~~~~~~al~l 287 (474)
T 4abn_A 214 RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEES-----YGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHh
Confidence 8888899999888 88999999999887641 2 367888888888999999 88888887766544
Q ss_pred C
Q 029406 176 D 176 (194)
Q Consensus 176 ~ 176 (194)
.
T Consensus 288 ~ 288 (474)
T 4abn_A 288 D 288 (474)
T ss_dssp C
T ss_pred C
Confidence 3
No 62
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.05 E-value=0.00015 Score=50.42 Aligned_cols=126 Identities=7% Similarity=-0.063 Sum_probs=95.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+..+-..+...|+++.|...|+...+ . .+.+...+..+-..+...|++++|...|.+..... +.+...|..+-.+|.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~-~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIE-L-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-H-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH-h-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 44566677889999999999999873 2 23468888899999999999999999999988764 346788999999999
Q ss_pred cCCChHHHHHHHHHhHhCCCCCChhhH--HHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPISLPF--RVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~~~ty--~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
..|++++|...|+...+.. +-+...+ ..+...+...|+ .++|.+.++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~-----~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKA-----FERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH-----HHHHHHcccch
Confidence 9999999999999987652 2233344 333333555666 67777666543
No 63
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.98 E-value=7.6e-05 Score=57.95 Aligned_cols=128 Identities=9% Similarity=0.009 Sum_probs=95.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHH----HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-CC----HHhHH
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMF----FYRDMLMMLARNKKVVEAKQVWEDLKREEVL-FD----QHTFG 110 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~----~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-p~----~~ty~ 110 (194)
..+..+...|++++|..+++...+.....|+.. .+..+-..+...+++++|+..|.+....... ++ ..+|+
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 457778899999999999999984333334422 3345666777788999999999999874322 23 34799
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHh----C-CCCCC-hhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 111 DIIRAFSDSGLPSEAMFIYNEMRS----S-PATPI-SLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 111 ~li~~~~~~g~~~~a~~l~~~M~~----~-g~~p~-~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
.+-..|...|++++|...|+...+ . +..+. ..+|..+...|.+.|+ .++|.+.++..
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-----y~~A~~~~~~a 222 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-----YEESLYQVNKA 222 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHH
Confidence 999999999999999999999863 2 22222 3488888899999999 77777666544
No 64
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.96 E-value=0.00044 Score=45.71 Aligned_cols=107 Identities=9% Similarity=0.104 Sum_probs=83.4
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCCC----HHhHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE--VLFD----QHTFGD 111 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p~----~~ty~~ 111 (194)
+..+-..+...|+++.|...|+...+ . .+.+...+..+-..|...|++++|...|.+..... ..++ ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~-~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKE-L-DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHh-c-CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44566677889999999999999873 2 24467888888999999999999999999887653 2233 778889
Q ss_pred HHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHH
Q 029406 112 IIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148 (194)
Q Consensus 112 li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll 148 (194)
+-.+|.+.|++++|...|+...+. .|+...+..+-
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~ 119 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 999999999999999999998764 34554444443
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=97.96 E-value=0.00031 Score=54.86 Aligned_cols=128 Identities=10% Similarity=0.030 Sum_probs=90.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HH-HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MF-FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~-~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
+..+...+.+.|+++.|..+|+...+ +.|+ .. .|..+...+.+.|++++|..+|++..+.. +++...|......
T Consensus 102 ~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~ 177 (308)
T 2ond_A 102 YFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALM 177 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT---SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh---ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 45666777788999999999999873 4454 33 78888888888999999999998887653 2234444433333
Q ss_pred Hh-cCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccccc
Q 029406 116 FS-DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVY 175 (194)
Q Consensus 116 ~~-~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~ 175 (194)
.. ..|+++.|..+|+...+. .+-+...|..++..+.+.|+ .+.|..+|+.....
T Consensus 178 ~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~-----~~~A~~~~~~al~~ 232 (308)
T 2ond_A 178 EYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNE-----DNNTRVLFERVLTS 232 (308)
T ss_dssp HHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCC-----HHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHhc
Confidence 22 368888888888887654 22346777777777888888 78888888776553
No 66
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.96 E-value=0.00017 Score=63.66 Aligned_cols=126 Identities=16% Similarity=0.134 Sum_probs=83.6
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
..+..+=..|.+.|++++|+..|++..+ +.|+ ...|+.+=.+|.+.|++++|++.|++..+.. +-+...|+.+-.
T Consensus 44 ~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~ 119 (723)
T 4gyw_A 44 AAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLAS 119 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3445556666677777777777777752 3343 6677777777777777777777777766542 124567777777
Q ss_pred HHhcCCChHHHHHHHHHhHhCCCCC-ChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 115 AFSDSGLPSEAMFIYNEMRSSPATP-ISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~g~~p-~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
+|.+.|++++|...|++..+. .| +...|..+...+...|+ +++|.+.++..
T Consensus 120 ~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~-----~~~A~~~~~ka 171 (723)
T 4gyw_A 120 IHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCD-----WTDYDERMKKL 171 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTC-----CTTHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhccc-----HHHHHHHHHHH
Confidence 777777777777777776543 23 35667777777777777 55565555543
No 67
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.94 E-value=8.7e-05 Score=47.91 Aligned_cols=94 Identities=9% Similarity=-0.042 Sum_probs=64.5
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC--CHHhHHHHHHHH
Q 029406 39 VSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF--DQHTFGDIIRAF 116 (194)
Q Consensus 39 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p--~~~ty~~li~~~ 116 (194)
..+-..+...|++++|...|+...+ . .+.+...|..+-..+...|++++|...|.+..+.. +. +...|..+..+|
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~-~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQ-L-DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHH-H-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH-h-CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence 3445556677788888888877762 1 22356667777777777788888888777776542 22 466777777777
Q ss_pred hcC-CChHHHHHHHHHhHhC
Q 029406 117 SDS-GLPSEAMFIYNEMRSS 135 (194)
Q Consensus 117 ~~~-g~~~~a~~l~~~M~~~ 135 (194)
.+. |++++|...|......
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGG
T ss_pred HHHhCCHHHHHHHHHHHhhc
Confidence 777 7888888777776554
No 68
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.94 E-value=0.001 Score=42.95 Aligned_cols=95 Identities=12% Similarity=-0.057 Sum_probs=78.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+..+-..+...|+++.|...|+.... . .+.+...+..+-..|...|++++|...+.+..... +.+...+..+..+|.
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIK-L-DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH-H-CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 44566677789999999999999873 2 23467788888889999999999999999887763 336788899999999
Q ss_pred cCCChHHHHHHHHHhHhC
Q 029406 118 DSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~ 135 (194)
..|++++|...|+...+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 999999999999988755
No 69
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.93 E-value=0.00048 Score=46.77 Aligned_cols=91 Identities=12% Similarity=0.027 Sum_probs=76.3
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCC
Q 029406 42 LAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGL 121 (194)
Q Consensus 42 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 121 (194)
=..+.+.|++++|++.|+...+ . .+.+...|..+=.+|.+.|++++|+..|.+..+.. +.+...|..+-.+|...|+
T Consensus 20 G~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 96 (126)
T 4gco_A 20 GNEYFKKGDYPTAMRHYNEAVK-R-DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMRE 96 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHH-h-CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCC
Confidence 3457789999999999999873 2 23468888889999999999999999999988764 3367889999999999999
Q ss_pred hHHHHHHHHHhHhC
Q 029406 122 PSEAMFIYNEMRSS 135 (194)
Q Consensus 122 ~~~a~~l~~~M~~~ 135 (194)
+++|...|+...+.
T Consensus 97 ~~~A~~~~~~al~l 110 (126)
T 4gco_A 97 WSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987664
No 70
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.93 E-value=0.00027 Score=56.33 Aligned_cols=115 Identities=4% Similarity=-0.142 Sum_probs=94.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC----------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD----------------MFFYRDMLMMLARNKKVVEAKQVWEDLKREE 101 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----------------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g 101 (194)
+..+-..+.+.|++++|...|+.... . .|+ ...|..+-.+|.+.|++++|+..|.+..+..
T Consensus 150 ~~~~g~~~~~~g~~~~A~~~y~~Al~-~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 150 VKERGTVYFKEGKYKQALLQYKKIVS-W--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH-H--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH-H--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44556667789999999999999973 2 233 5889999999999999999999999998764
Q ss_pred CCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCch
Q 029406 102 VLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEF 157 (194)
Q Consensus 102 ~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~ 157 (194)
+.+...|..+-.+|...|++++|...|+...+.. +-+...+..+...+.+.|+.
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHH
Confidence 3478899999999999999999999999987652 33567788888888877773
No 71
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.91 E-value=0.00031 Score=59.66 Aligned_cols=132 Identities=7% Similarity=-0.131 Sum_probs=101.9
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+..+-..+...|++++|.+.|+...+ . .+-+...|..+-..|...|++++|...|++..+.. +-+...|..+-.+
T Consensus 24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 100 (568)
T 2vsy_A 24 VAWLMLADAELGMGDTTAGEMAVQRGLA-L-HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHA 100 (568)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHT-T-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3455566677788999999999999873 2 23357788888899999999999999999887763 3367889999999
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCC---CchHHhHHHHHhhhcccccccC
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPY---PEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~---g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
|.+.|++++|...|+...+.. +-+...+..+...+... |+ .++|.+.++.....+
T Consensus 101 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~-----~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 101 LEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRA-----LDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTT-----HHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhcccc-----HHHHHHHHHHHHhcC
Confidence 999999999999999876652 33467788888888777 88 777777776654433
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=97.91 E-value=0.00029 Score=55.02 Aligned_cols=133 Identities=11% Similarity=-0.018 Sum_probs=100.6
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLA-RNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
.+..+...+.+.|+++.|..+|+... ... +++...|........ ..|++++|..+|++..+.. +-+...|..++..
T Consensus 136 ~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~ 212 (308)
T 2ond_A 136 VYIQYMKFARRAEGIKSGRMIFKKAR-EDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDY 212 (308)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHH-TST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH-hcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 45667777788999999999999997 322 234455554443322 3799999999999887652 3367889999999
Q ss_pred HhcCCChHHHHHHHHHhHhCC-CCCC--hhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 116 FSDSGLPSEAMFIYNEMRSSP-ATPI--SLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g-~~p~--~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
+.+.|++++|..+|+...... +.|+ ...|..++..+.+.|+ .+.|..+++.+....|
T Consensus 213 ~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~-----~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 213 LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD-----LASILKVEKRRFTAFR 272 (308)
T ss_dssp HHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC-----HHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHcc
Confidence 999999999999999998863 5664 5678888888888888 7777777776654443
No 73
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=0.0012 Score=44.65 Aligned_cols=96 Identities=10% Similarity=-0.034 Sum_probs=79.2
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD----MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGD 111 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~ 111 (194)
..+..+-..+...|+++.|...|+...+ ..|+ ...|..+-..|...|++++|...|.+..... +.+...|..
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 3455667777889999999999999973 4566 6788888888999999999999999887653 336778888
Q ss_pred HHHHHhcCCChHHHHHHHHHhHhC
Q 029406 112 IIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 112 li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
+-.+|...|++++|...|+.....
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999999999999999988654
No 74
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.89 E-value=4.3e-05 Score=54.51 Aligned_cols=95 Identities=4% Similarity=-0.003 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHH-HHhCCCH--HHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMM-LARNKKV--VEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~g~~--~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
+..+-..+...|+++.|...|+...+ .. +.+...+..+-.+ |...|++ ++|...|.+..... +-+...+..+-.
T Consensus 47 ~~~lg~~~~~~~~~~~A~~~~~~al~-~~-p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~ 123 (177)
T 2e2e_A 47 WALLGEYYLWQNDYSNSLLAYRQALQ-LR-GENAELYAALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLAS 123 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-HH-CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-cC-CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34444455555666666666665542 11 1234444444444 4455555 66666666555442 123455555555
Q ss_pred HHhcCCChHHHHHHHHHhHhC
Q 029406 115 AFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~ 135 (194)
.|...|++++|...|+...+.
T Consensus 124 ~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 124 DAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHcccHHHHHHHHHHHHhh
Confidence 666666666666666655443
No 75
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.87 E-value=0.00016 Score=51.21 Aligned_cols=92 Identities=8% Similarity=0.002 Sum_probs=58.6
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhc
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 118 (194)
.+-..+.+.|++++|...|+.... +.| +...|..+=.+|.+.|++++|+..|++..+.. +-+...|..+-.+|.+
T Consensus 41 ~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 41 SYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 344455566777777777777752 223 46666666667777777777777777666543 2244566667777777
Q ss_pred CCChHHHHHHHHHhHhC
Q 029406 119 SGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~ 135 (194)
.|++++|...|+...+.
T Consensus 117 lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQH 133 (151)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777766543
No 76
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.82 E-value=0.00094 Score=42.80 Aligned_cols=102 Identities=9% Similarity=-0.132 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCC--ChhhHHHHH
Q 029406 71 MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATP--ISLPFRVIL 148 (194)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p--~~~ty~~ll 148 (194)
...|..+-..+.+.|++++|...|.+..+.. +.+...|..+-..|...|++++|...|+...+.. +. +...|..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 4556677788889999999999999988764 3367889999999999999999999999987652 33 578889999
Q ss_pred HhhCCC-CchHHhHHHHHhhhcccccccCCch
Q 029406 149 KGLIPY-PEFREKVKDDFLELFPDMIVYDPPE 179 (194)
Q Consensus 149 ~~~~~~-g~~~~~~~~~a~~~~~~m~~~~~~~ 179 (194)
..+... |+ .++|.+.+.......|++
T Consensus 84 ~~~~~~~~~-----~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 84 DALRYIEGK-----EVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHTTCSSC-----SHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHhCC-----HHHHHHHHHHHhhcccCC
Confidence 999999 99 889999988887766654
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.82 E-value=0.00099 Score=58.75 Aligned_cols=131 Identities=10% Similarity=0.073 Sum_probs=107.0
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
.+..+=..+.+.|++++|++.|++..+ +.|+ ...|+.+=.+|.+.|++++|+..|++..+.. +-+...|+.+-.+
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~---l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALE---VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 355566677889999999999999873 3454 7889999999999999999999999988753 2257899999999
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
|.+.|++++|...|++..+.. +-+...|+.+-..|.+.|+ .++|.+.|+......|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~-----~~eAi~~~~~Al~l~P 142 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGN-----IPEAIASYRTALKLKP 142 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHCS
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhCC
Confidence 999999999999999986641 2346789999999999999 8888888777654443
No 78
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.79 E-value=0.00023 Score=47.40 Aligned_cols=103 Identities=6% Similarity=-0.004 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHH
Q 029406 68 RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVI 147 (194)
Q Consensus 68 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~l 147 (194)
+.+...|..+-..+.+.|++++|...|.+..... +.+...|..+..+|...|++++|..+|+...+.. +.+...|..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 3457788889999999999999999999987653 3378889999999999999999999999987652 3457788888
Q ss_pred HHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 148 LKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 148 l~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
...+...|+ .+.|.+.++......|
T Consensus 91 a~~~~~~~~-----~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 91 AAALEAMKD-----YTKAMDVYQKALDLDS 115 (133)
T ss_dssp HHHHHHTTC-----HHHHHHHHHHHHHHCG
T ss_pred HHHHHHHhh-----HHHHHHHHHHHHHhCC
Confidence 899999999 8888888887665544
No 79
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.78 E-value=0.00027 Score=59.00 Aligned_cols=130 Identities=6% Similarity=-0.021 Sum_probs=106.8
Q ss_pred hHHHHHHHHHhcCCH-hHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 37 DLVSVLAEFQRQDQV-FLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~-~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
.+..+-..+...|++ ++|...|+...+ ..| +...|..+=..|.+.|++++|...|.+..+. .|+...|..+-.
T Consensus 104 ~~~~lg~~~~~~g~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 104 ALMLKGKALNVTPDYSPEAEVLLSKAVK---LEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp HHHHHHHHHTSSSSCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 344555667778999 999999999973 234 4889999999999999999999999998876 478899999999
Q ss_pred HHhcC---------CChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCC--------CchHHhHHHHHhhhcccccccCC
Q 029406 115 AFSDS---------GLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPY--------PEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 115 ~~~~~---------g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~--------g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
.|... |++++|...|++..+.. +-+...|..+-..|... |+ .++|.+.|+......|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~-----~~~A~~~~~~al~~~p 252 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI-----SQQALSAYAQAEKVDR 252 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH-----HHHHHHHHHHHHHHCG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch-----HHHHHHHHHHHHHhCC
Confidence 99999 99999999999987652 33577888888888766 77 8888888887766554
No 80
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.77 E-value=0.0005 Score=57.79 Aligned_cols=128 Identities=10% Similarity=0.072 Sum_probs=94.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHH-H
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD--MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII-R 114 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li-~ 114 (194)
+......+.+.|+++.|..+|+...+ +.|+ ...|......+.+.|+.++|..+|.+..+.. +.+...|.... -
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~ 399 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALM 399 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHH
Confidence 44566777788999999999999983 4554 3589999999999999999999999887653 11222232222 1
Q ss_pred HHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccccc
Q 029406 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVY 175 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~ 175 (194)
.+...|+.++|..+|+...+. .+-+...|..++..+.+.|+ .+.|..+|+.....
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~-~p~~~~~~~~~~~~~~~~g~-----~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNE-----DNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTTTC-----HHHHHHHHHHHHHS
T ss_pred HHHHcCChhHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhCCC-----HhhHHHHHHHHHhc
Confidence 233689999999999987654 23356888888888999999 88888888876554
No 81
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.77 E-value=0.00043 Score=54.87 Aligned_cols=126 Identities=7% Similarity=0.009 Sum_probs=94.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC-----CHHhHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWY-RPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF-----DQHTFGD 111 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-----~~~ty~~ 111 (194)
...+-..+...|++++|++++.... ..+- .-+...+..++..+.+.|+.+.|.+++.+|.+. .| +-.+...
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i-~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGI-DNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILN 179 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH-TSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh-ccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHH
Confidence 3455566777899999999999886 3332 236788899999999999999999999999765 55 2455555
Q ss_pred HHHH--Hh--cCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccc
Q 029406 112 IIRA--FS--DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 112 li~~--~~--~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
|..+ .. ..+++..|+.+|+++.+. .|+..+-..+++++.+.|+ +++|.+.++.+.
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~-----~~eAe~~L~~l~ 238 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRN-----IAEAQGIVELLL 238 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTC-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCC-----HHHHHHHHHHHH
Confidence 5555 22 234899999999998665 3554555666668888888 888888887543
No 82
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.77 E-value=0.00071 Score=51.21 Aligned_cols=136 Identities=8% Similarity=-0.109 Sum_probs=99.4
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCC-CHHhHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREE-VLF-DQHTFGDI 112 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p-~~~ty~~l 112 (194)
..+...-..+.+.|++++|...|+...+...-.|. ...+..+-.+|.+.|++++|...|.+..... -.| ....+..+
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence 34555666778899999999999999732221121 5677888888999999999999999998752 122 24567777
Q ss_pred HHHHhc--------CCChHHHHHHHHHhHhCCCCCChhhH-----------------HHHHHhhCCCCchHHhHHHHHhh
Q 029406 113 IRAFSD--------SGLPSEAMFIYNEMRSSPATPISLPF-----------------RVILKGLIPYPEFREKVKDDFLE 167 (194)
Q Consensus 113 i~~~~~--------~g~~~~a~~l~~~M~~~g~~p~~~ty-----------------~~ll~~~~~~g~~~~~~~~~a~~ 167 (194)
-.+|.+ .|++++|...|+...+.. +-+...+ ..+-..|.+.|+ .+.|..
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~ 169 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERREL-----YEAAAV 169 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----HHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-----HHHHHH
Confidence 888888 999999999999987651 2222333 344667888899 888888
Q ss_pred hcccccccCC
Q 029406 168 LFPDMIVYDP 177 (194)
Q Consensus 168 ~~~~m~~~~~ 177 (194)
.|+......|
T Consensus 170 ~~~~~l~~~p 179 (261)
T 3qky_A 170 TYEAVFDAYP 179 (261)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHHCC
Confidence 8887755443
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.77 E-value=0.0012 Score=48.82 Aligned_cols=114 Identities=9% Similarity=-0.111 Sum_probs=89.4
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCH-------Hh
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ-------HT 108 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~-------~t 108 (194)
.+..+-.++...|++++|+..|+...+ ..| +...|..+-..|...|++++|...|.+..+.. +-+. ..
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~ 119 (228)
T 4i17_A 44 TAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIY 119 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHH
Confidence 344466677789999999999999973 345 46788889999999999999999999988753 2234 56
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHhCCCCCC---hhhHHHHHHhhCCCCc
Q 029406 109 FGDIIRAFSDSGLPSEAMFIYNEMRSSPATPI---SLPFRVILKGLIPYPE 156 (194)
Q Consensus 109 y~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~---~~ty~~ll~~~~~~g~ 156 (194)
|..+-..+...|++++|...|+...+. .|+ ...|..+-..|...|+
T Consensus 120 ~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~~~ 168 (228)
T 4i17_A 120 YLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFYNNGA 168 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHHHH
Confidence 888888899999999999999998765 454 4667777777766555
No 84
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.76 E-value=0.00015 Score=48.01 Aligned_cols=107 Identities=7% Similarity=0.042 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCC--CCCC----hhhH
Q 029406 71 MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSP--ATPI----SLPF 144 (194)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g--~~p~----~~ty 144 (194)
...|..+-..+...|++++|...|.+..... +.+...+..+...|...|++++|..+|+...... ..++ ..+|
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3567778888999999999999999988764 4477889999999999999999999999886542 1223 6778
Q ss_pred HHHHHhhCCCCchHHhHHHHHhhhcccccccCCchhhhh
Q 029406 145 RVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPEDLFE 183 (194)
Q Consensus 145 ~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 183 (194)
..+...+...|+ .+.|.+.++......|.+++..
T Consensus 83 ~~la~~~~~~~~-----~~~A~~~~~~~~~~~~~~~~~~ 116 (131)
T 1elr_A 83 ARIGNSYFKEEK-----YKDAIHFYNKSLAEHRTPDVLK 116 (131)
T ss_dssp HHHHHHHHHTTC-----HHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHhcc-----HHHHHHHHHHHHHhCCCHHHHH
Confidence 888888999999 8999999988776666555443
No 85
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.76 E-value=0.00029 Score=45.71 Aligned_cols=102 Identities=6% Similarity=-0.040 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHH
Q 029406 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILK 149 (194)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~ 149 (194)
+...+..+-..+...|++++|...|.+..... +.+...+..+...|.+.|++++|...++...+.. +.+...|..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 34567778888999999999999999987753 3377889999999999999999999999987652 335778888889
Q ss_pred hhCCCCchHHhHHHHHhhhcccccccCCc
Q 029406 150 GLIPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 150 ~~~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
.+...|+ .+.|.+.++......|.
T Consensus 81 ~~~~~~~-----~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 81 ALEFLNR-----FEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp HHHHTTC-----HHHHHHHHHHHHTTCTT
T ss_pred HHHHHhh-----HHHHHHHHHHHHHcCCC
Confidence 9999999 88899988877665554
No 86
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.76 E-value=0.0014 Score=44.10 Aligned_cols=96 Identities=7% Similarity=-0.111 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+..+-..+...|+++.|...|+.... . .+.+...|..+-..|...|++++|...|.+..... +-+...|..+-.+
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAIT-R-NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHh-h-CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 4455666778889999999999998863 2 23357788888888999999999999999887754 3367788899999
Q ss_pred HhcCCChHHHHHHHHHhHh
Q 029406 116 FSDSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~ 134 (194)
|...|++++|...|....+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 9999999999999988754
No 87
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.76 E-value=0.0014 Score=48.73 Aligned_cols=134 Identities=7% Similarity=0.010 Sum_probs=93.3
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCH-HHHHHHHHHHH------------------hCCCHHHHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDM-FFYRDMLMMLA------------------RNKKVVEAKQVWED 96 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~------------------~~g~~~~a~~l~~~ 96 (194)
..+..+-.++.+.|++++|+..|+...+...-.+.. ..+..+-.++. ..|++++|...|.+
T Consensus 42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 121 (225)
T 2yhc_A 42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSK 121 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHH
Confidence 456677788899999999999999997433333332 12222222222 35789999999999
Q ss_pred HHhcCCCCCHH-hH-----------------HHHHHHHhcCCChHHHHHHHHHhHhCCCCCC----hhhHHHHHHhhCCC
Q 029406 97 LKREEVLFDQH-TF-----------------GDIIRAFSDSGLPSEAMFIYNEMRSSPATPI----SLPFRVILKGLIPY 154 (194)
Q Consensus 97 m~~~g~~p~~~-ty-----------------~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~----~~ty~~ll~~~~~~ 154 (194)
+.+. .|+.. .+ -.+-..|.+.|+++.|...|+.+.+. .|+ ...+..+..++.+.
T Consensus 122 ~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~ 197 (225)
T 2yhc_A 122 LVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQM 197 (225)
T ss_dssp HHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHT
T ss_pred HHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHc
Confidence 8865 23321 11 23455788899999999999998765 233 25677888899999
Q ss_pred CchHHhHHHHHhhhcccccccCCc
Q 029406 155 PEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 155 g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
|+ .+.|.+.++.+...+|.
T Consensus 198 g~-----~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 198 QM-----NAQAEKVAKIIAANSSN 216 (225)
T ss_dssp TC-----HHHHHHHHHHHHHCCSC
T ss_pred CC-----cHHHHHHHHHHHhhCCC
Confidence 99 88888888876655543
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.75 E-value=0.00087 Score=51.97 Aligned_cols=135 Identities=13% Similarity=-0.020 Sum_probs=97.4
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhC-CCHHHHHHHHHHHHhcC--C--CCC-H
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD----MFFYRDMLMMLARN-KKVVEAKQVWEDLKREE--V--LFD-Q 106 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~-g~~~~a~~l~~~m~~~g--~--~p~-~ 106 (194)
.+..+-..|.+.|++++|+..|+....-..-..+ ..+++.+=..|... |++++|+..|++..+.. . .+. .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 4556777788899999999999887531111111 45788888899986 99999999999877532 1 111 4
Q ss_pred HhHHHHHHHHhcCCChHHHHHHHHHhHhCCCC-CCh-----hhHHHHHHhhCCCCchHHhHHHHHhhhcccccccC
Q 029406 107 HTFGDIIRAFSDSGLPSEAMFIYNEMRSSPAT-PIS-----LPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 107 ~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~-p~~-----~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
.+|+.+-..|.+.|++++|...|+...+..-. +.. .+|..+..++...|+ .+.|...++......
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-----~~~A~~~~~~al~l~ 229 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD-----AVAAARTLQEGQSED 229 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC-----HHHHHHHHHGGGCC-
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhhC
Confidence 57899999999999999999999998765322 221 156667777888899 888888877665433
No 89
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.74 E-value=0.0012 Score=46.32 Aligned_cols=96 Identities=11% Similarity=-0.035 Sum_probs=81.0
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
.+..+-..+.+.|++++|+..|+...+ . .+-+...|..+-.+|.+.|++++|+..|.+..+.. +-+...|..+-.+|
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALS-I-APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-H-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 345566678889999999999999973 2 23368889999999999999999999999998764 33688999999999
Q ss_pred hcCCChHHHHHHHHHhHhC
Q 029406 117 SDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~ 135 (194)
.+.|++++|...|+...+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 9999999999999998654
No 90
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.0017 Score=43.28 Aligned_cols=95 Identities=14% Similarity=-0.044 Sum_probs=76.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+...-..+.+.|++++|...|+...+ . .+.+...|..+-.+|.+.|++++|+..|.+..+.. +-+...|..+-.+|.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~-~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIK-R-APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH-h-CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34445567789999999999999873 2 23467888889999999999999999999888764 336778999999999
Q ss_pred cCCChHHHHHHHHHhHhC
Q 029406 118 DSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~ 135 (194)
..|++++|...|+...+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999987553
No 91
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.70 E-value=0.0013 Score=45.10 Aligned_cols=94 Identities=7% Similarity=-0.098 Sum_probs=75.6
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhc
Q 029406 39 VSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118 (194)
Q Consensus 39 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 118 (194)
..+-..+.+.|++++|...|+.... . -+.+...|..+=.+|.+.|++++|...|.+..... +-+...|..+-.+|..
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCM-L-DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHH-h-CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3455567788999999999999873 1 23367788888888999999999999999888764 3356678888899999
Q ss_pred CCChHHHHHHHHHhHhC
Q 029406 119 SGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~ 135 (194)
.|++++|...|+...+.
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999987654
No 92
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.70 E-value=0.0011 Score=46.77 Aligned_cols=111 Identities=12% Similarity=-0.033 Sum_probs=90.1
Q ss_pred CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHH
Q 029406 67 YRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFR 145 (194)
Q Consensus 67 ~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~ 145 (194)
+.|+ ...+..+=..+.+.|++++|...|++..... +-+...|..+-.+|.+.|++++|...|+...... +-+...|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHH
Confidence 3343 4456666778889999999999999998764 3378899999999999999999999999987652 33577888
Q ss_pred HHHHhhCCCCchHHhHHHHHhhhcccccccCCchhhhhh
Q 029406 146 VILKGLIPYPEFREKVKDDFLELFPDMIVYDPPEDLFED 184 (194)
Q Consensus 146 ~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 184 (194)
.+-.+|...|+ .++|...|+......|.+++-+.
T Consensus 109 ~lg~~~~~lg~-----~~eA~~~~~~al~l~~~~~~~~~ 142 (151)
T 3gyz_A 109 HTGQCQLRLKA-----PLKAKECFELVIQHSNDEKLKIK 142 (151)
T ss_dssp HHHHHHHHTTC-----HHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHcCC-----HHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999 99999999998877776664443
No 93
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.69 E-value=0.0029 Score=44.03 Aligned_cols=114 Identities=8% Similarity=-0.055 Sum_probs=84.0
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
.+..+-..|.+.|++++|++.|+...+ +.| +...|..+=..|.+.|++++|...|.+..+.. +-+...|..+-..
T Consensus 33 ~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 108 (150)
T 4ga2_A 33 KGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAEL 108 (150)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345667778889999999999999873 334 57888888899999999999999999887753 2257788889999
Q ss_pred HhcCCChHHHHHH-HHHhHhCCCCC-ChhhHHHHHHhhCCCCc
Q 029406 116 FSDSGLPSEAMFI-YNEMRSSPATP-ISLPFRVILKGLIPYPE 156 (194)
Q Consensus 116 ~~~~g~~~~a~~l-~~~M~~~g~~p-~~~ty~~ll~~~~~~g~ 156 (194)
|.+.|+++++... ++...+- .| +...|...-..+...|+
T Consensus 109 ~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 109 LCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred HHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 9999998776654 4665443 33 45566665555555543
No 94
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.69 E-value=0.0014 Score=54.51 Aligned_cols=134 Identities=7% Similarity=-0.044 Sum_probs=96.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-------------MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF 104 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-------------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p 104 (194)
+...=..+.+.|++++|...|+...+...-.++ ...|+.+=.+|.+.|++++|+..|.+..+.. +-
T Consensus 271 ~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~ 349 (457)
T 1kt0_A 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SA 349 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-Cc
Confidence 344556778899999999999998732211111 5788888899999999999999999998764 33
Q ss_pred CHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccc
Q 029406 105 DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 105 ~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
+...|..+-.+|...|++++|...|+...+.. +-+...|..+-..+.+.|+..++.......+|..+.
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k~~ 417 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFA 417 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 78889999999999999999999999987652 334567777777787777744444444455555543
No 95
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.65 E-value=0.0005 Score=53.35 Aligned_cols=146 Identities=8% Similarity=-0.010 Sum_probs=101.4
Q ss_pred hHHHHHHHHhhhhchhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 029406 21 RFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99 (194)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 99 (194)
.+..++.... +.....+..+-..+...|++++|...|+.... ..| +...+..+-..|.+.|++++|..++++...
T Consensus 104 ~l~~~l~~~l-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 104 AIRALLDXVL-PREEELXAQQAMQLMQESNYTDALPLLXDAWQ---LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHS-CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHc-CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 4555555543 12223455666777889999999999999973 234 577888899999999999999999997755
Q ss_pred cCCCCCHHhHHHHHH-HHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCc
Q 029406 100 EEVLFDQHTFGDIIR-AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 100 ~g~~p~~~ty~~li~-~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
. .|+......... .+...+..+.|...|+..... -+.+...+..+-..+...|+ .++|...+.......|.
T Consensus 180 ~--~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~-~P~~~~~~~~la~~l~~~g~-----~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 180 Q--DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE-NPEDAALATQLALQLHQVGR-----NEEALELLFGHLRXDLT 251 (287)
T ss_dssp G--GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHCTT
T ss_pred h--hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhc-CCccHHHHHHHHHHHHHccc-----HHHHHHHHHHHHhcccc
Confidence 4 455443322222 255667777788888777655 24456778888888888888 78888887776655443
No 96
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.64 E-value=0.00016 Score=48.18 Aligned_cols=104 Identities=6% Similarity=-0.116 Sum_probs=73.9
Q ss_pred hcCCHhHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHH
Q 029406 47 RQDQVFLCMKLYDVVRKEIW--YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSE 124 (194)
Q Consensus 47 ~~~~~~~a~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 124 (194)
..|++++|+..|+... ..+ -+-+...|..+-..|.+.|++++|+..|.+..+.. +-+...+..+-.+|.+.|++++
T Consensus 2 ~~g~~~~A~~~~~~al-~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAI-ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHH-HcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHH
Confidence 4578889999999987 332 12346677888888999999999999999988764 2257788889999999999999
Q ss_pred HHHHHHHhHhC-CCCCChhhHHHHHHhhC
Q 029406 125 AMFIYNEMRSS-PATPISLPFRVILKGLI 152 (194)
Q Consensus 125 a~~l~~~M~~~-g~~p~~~ty~~ll~~~~ 152 (194)
|...|+..... .-.|+...|...+..|.
T Consensus 80 A~~~~~~al~~~p~~~~~~~~~~ai~~~~ 108 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETIQSYKQAILFYA 108 (117)
T ss_dssp HHHHHHHHHHHHCCCHHHHHTHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 99999987554 33344555555555544
No 97
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.64 E-value=0.0028 Score=44.11 Aligned_cols=95 Identities=8% Similarity=-0.088 Sum_probs=77.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+..+-..+...|++++|...|+.... . -+.+...|..+=.+|.+.|++++|+..|.+..... +-+...|..+-.+|.
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCV-L-DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH-c-CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 34456667789999999999999863 1 23367788888888999999999999999988754 235678888999999
Q ss_pred cCCChHHHHHHHHHhHhC
Q 029406 118 DSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~ 135 (194)
..|++++|...|+...+.
T Consensus 101 ~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999987654
No 98
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.63 E-value=0.0041 Score=49.22 Aligned_cols=134 Identities=10% Similarity=-0.006 Sum_probs=90.3
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-----CHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCCC
Q 029406 35 KSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-----DMFFYRDMLMMLAR----NKKVVEAKQVWEDLKREEVLFD 105 (194)
Q Consensus 35 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-----~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~ 105 (194)
...+...+..+.+.|+++.|.+.++.|.+ ..| +-.+...|..++.. .+.+.+|..+|+++... .|+
T Consensus 136 lea~~l~vqi~L~~~r~d~A~k~l~~~~~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~ 210 (310)
T 3mv2_B 136 TELLLLAIEVALLNNNVSTASTIFDNYTN---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPT 210 (310)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCC
Confidence 34455778899999999999999999973 456 35666666666444 34899999999998654 456
Q ss_pred HHhHHHHHHHHhcCCChHHHHHHHHHhHhC-----C----CCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccC
Q 029406 106 QHTFGDIIRAFSDSGLPSEAMFIYNEMRSS-----P----ATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 106 ~~ty~~li~~~~~~g~~~~a~~l~~~M~~~-----g----~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
..+-..+++++.+.|++++|...++.+.+. . -+-|..+.-.+|......|+ .+.++++++....
T Consensus 211 ~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk-------~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 211 WKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL-------DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC-------TTHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh-------HHHHHHHHHHHhC
Confidence 445556666999999999999999976542 1 12345666344433333454 3345555555544
Q ss_pred Cchh
Q 029406 177 PPED 180 (194)
Q Consensus 177 ~~~~ 180 (194)
|...
T Consensus 284 P~hp 287 (310)
T 3mv2_B 284 HEHA 287 (310)
T ss_dssp CCCH
T ss_pred CCCh
Confidence 4433
No 99
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.63 E-value=0.0016 Score=49.27 Aligned_cols=140 Identities=12% Similarity=0.122 Sum_probs=96.8
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHh--------CCCHHHHHHHHHHHHhcCCCCC-
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLAR--------NKKVVEAKQVWEDLKREEVLFD- 105 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~--------~g~~~~a~~l~~~m~~~g~~p~- 105 (194)
..+..+-.++.+.|++++|...|+...+...-.|. ...+..+-.++.+ .|++++|...|.+..... |+
T Consensus 53 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~ 130 (261)
T 3qky_A 53 DAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNH 130 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTC
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCc
Confidence 34556777788999999999999999843322333 4556667777777 999999999999988753 22
Q ss_pred HHhH-----------------HHHHHHHhcCCChHHHHHHHHHhHhCC-CCC-ChhhHHHHHHhhCCCCch-----HHhH
Q 029406 106 QHTF-----------------GDIIRAFSDSGLPSEAMFIYNEMRSSP-ATP-ISLPFRVILKGLIPYPEF-----REKV 161 (194)
Q Consensus 106 ~~ty-----------------~~li~~~~~~g~~~~a~~l~~~M~~~g-~~p-~~~ty~~ll~~~~~~g~~-----~~~~ 161 (194)
.... -.+-..|.+.|++++|...|+...+.. -.| ....+..+..+|...|+. ....
T Consensus 131 ~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~ 210 (261)
T 3qky_A 131 ELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPER 210 (261)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccch
Confidence 2222 455788999999999999999987641 111 234666666777655211 1122
Q ss_pred HHHHhhhcccccccCC
Q 029406 162 KDDFLELFPDMIVYDP 177 (194)
Q Consensus 162 ~~~a~~~~~~m~~~~~ 177 (194)
.++|...++......|
T Consensus 211 ~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 211 YRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHCC
Confidence 7888888887765444
No 100
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.63 E-value=0.0052 Score=47.37 Aligned_cols=132 Identities=8% Similarity=-0.015 Sum_probs=95.3
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCCC--HH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDM----FFYRDMLMMLARNKKVVEAKQVWEDLKREE---VLFD--QH 107 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~g---~~p~--~~ 107 (194)
.+...+..+...|++++|.+.++...+.....++. ..+..+-..+...|++++|+..+.+..... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 34566778889999999999998876322221111 223445566778899999999999887532 2222 45
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHh----CCCCC--ChhhHHHHHHhhCCCCchHHhHHHHHhhhccccc
Q 029406 108 TFGDIIRAFSDSGLPSEAMFIYNEMRS----SPATP--ISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 108 ty~~li~~~~~~g~~~~a~~l~~~M~~----~g~~p--~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
+|+.+-..|...|++++|...|++..+ .+-.+ ...+|..+-..|...|+ .++|.+.++...
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-----y~~Al~~~~kal 223 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-----YEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh-----HHHHHHHHHHHH
Confidence 899999999999999999999998752 22122 22588888899999999 777777776543
No 101
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.63 E-value=0.00053 Score=45.21 Aligned_cols=101 Identities=10% Similarity=0.017 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHH
Q 029406 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILK 149 (194)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~ 149 (194)
+...+..+-..+...|++++|...|.+..... +.+...|..+...|...|++++|...+...... .+.+...|..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI-DPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc-CccCHHHHHHHHH
Confidence 45677788888999999999999999988753 337888999999999999999999999998765 2345778888888
Q ss_pred hhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 150 GLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 150 ~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
.+...|+ .+.|...++......|
T Consensus 89 ~~~~~~~-----~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 89 ALSSLNK-----HVEAVAYYKKALELDP 111 (131)
T ss_dssp HHHHTTC-----HHHHHHHHHHHHHHST
T ss_pred HHHHhCC-----HHHHHHHHHHHHhcCc
Confidence 9999999 8888888887665544
No 102
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.62 E-value=0.0014 Score=43.55 Aligned_cols=95 Identities=8% Similarity=-0.115 Sum_probs=73.4
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC----HHhHHHHH
Q 029406 39 VSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFD----QHTFGDII 113 (194)
Q Consensus 39 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~----~~ty~~li 113 (194)
..+-..+...|++++|...|+...+...-.|. ...+..+-..|.+.|++++|...|.+..... |+ ...+..+-
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHH
Confidence 34455677899999999999998742221121 1466777788889999999999999988753 32 56788888
Q ss_pred HHHhcCCChHHHHHHHHHhHhC
Q 029406 114 RAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
.+|.+.|++++|...|+.....
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998765
No 103
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.60 E-value=0.00029 Score=57.46 Aligned_cols=133 Identities=7% Similarity=0.023 Sum_probs=67.3
Q ss_pred HHHHHHHhcCC-HhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 40 SVLAEFQRQDQ-VFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 40 ~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
.+-..+...|+ +++|+..|+.... +.| +...|+.+=.++.+.|++++|+..|++..+.. +-+...|..+-.++.
T Consensus 136 ~~g~~l~~~g~d~~eAl~~~~~al~---l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~ 211 (382)
T 2h6f_A 136 FRRVLLKSLQKDLHEEMNYITAIIE---EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQ 211 (382)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcccCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHH
Confidence 33344445554 6666666665542 222 34555555555555566666666666555443 114555666666666
Q ss_pred cCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCC-CCchHHhHHHHHhhhcccccccCC
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIP-YPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~-~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
+.|++++|+..|+.+.+.. +-+...|+.+-..+.. .|...+++.+.+.+.++......|
T Consensus 212 ~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P 271 (382)
T 2h6f_A 212 EFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP 271 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST
T ss_pred HcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCC
Confidence 6666666666666655431 2234555555555554 333122223333455555544443
No 104
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.60 E-value=0.0068 Score=46.72 Aligned_cols=116 Identities=9% Similarity=0.017 Sum_probs=86.9
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHh----c-CCCCC-HHhHH
Q 029406 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPD----MFFYRDMLMMLARNKKVVEAKQVWEDLKR----E-EVLFD-QHTFG 110 (194)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~----~-g~~p~-~~ty~ 110 (194)
+...+...+++++|+..|+...+...-.++ ..+|+.+-..|...|++++|+..|.+..+ . +..+. ..+|.
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 444555678999999999999842222233 34689999999999999999999998874 1 22222 34889
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHh----CCCCCC-hhhHHHHHHhhCCCCc
Q 029406 111 DIIRAFSDSGLPSEAMFIYNEMRS----SPATPI-SLPFRVILKGLIPYPE 156 (194)
Q Consensus 111 ~li~~~~~~g~~~~a~~l~~~M~~----~g~~p~-~~ty~~ll~~~~~~g~ 156 (194)
.+-..|.+.|++++|...+++..+ .+..+. ..+|..+-..+.+.|+
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 251 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY 251 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999987643 333333 5788888888888884
No 105
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.59 E-value=0.00057 Score=46.04 Aligned_cols=102 Identities=8% Similarity=-0.020 Sum_probs=85.0
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHH
Q 029406 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVIL 148 (194)
Q Consensus 69 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll 148 (194)
.+...|..+-..+...|++++|...|.+..... +.+...|..+-.+|...|++++|...|+...... +-+...|..+-
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 467888889999999999999999999987764 3367899999999999999999999999987652 33577888888
Q ss_pred HhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 149 KGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 149 ~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
..+...|+ .+.|...+.......|
T Consensus 85 ~~~~~~~~-----~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 85 QCQLEMES-----YDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHHTTC-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhh-----HHHHHHHHHHHHHHCh
Confidence 99999999 8888888877654443
No 106
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.59 E-value=0.00044 Score=46.96 Aligned_cols=99 Identities=7% Similarity=-0.018 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhC
Q 029406 73 FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLI 152 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~ 152 (194)
.+...=..|.+.|++++|+..|.+..+.. +.+...|..+-.+|.+.|++++|...|+...+.. +.+...|..+-.++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 34444567889999999999999988764 3478899999999999999999999999987642 345778888999999
Q ss_pred CCCchHHhHHHHHhhhcccccccCCc
Q 029406 153 PYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 153 ~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
..|+ .++|.+.|+......|.
T Consensus 93 ~~~~-----~~~A~~~~~~al~l~P~ 113 (126)
T 4gco_A 93 AMRE-----WSKAQRAYEDALQVDPS 113 (126)
T ss_dssp HTTC-----HHHHHHHHHHHHHHCTT
T ss_pred HCCC-----HHHHHHHHHHHHHHCcC
Confidence 9999 89999998877665543
No 107
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.58 E-value=0.0021 Score=46.50 Aligned_cols=117 Identities=10% Similarity=-0.068 Sum_probs=89.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC--------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD--------------MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVL 103 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~--------------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 103 (194)
+..+-..+.+.|++++|...|+.......-.|+ ...|..+-.+|.+.|++++|+..+.+..... +
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p 119 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-K 119 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-c
Confidence 445556677899999999999999732222221 2778888889999999999999999988763 3
Q ss_pred CCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCc
Q 029406 104 FDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 104 p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~ 156 (194)
.+...|..+-.+|...|++++|...|+...+.. +-+...+..+...+...++
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHH
Confidence 477889999999999999999999999986541 2345666666666665555
No 108
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.54 E-value=0.00088 Score=45.45 Aligned_cols=102 Identities=7% Similarity=-0.160 Sum_probs=84.3
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC----HHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhH
Q 029406 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFD----QHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPF 144 (194)
Q Consensus 69 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~----~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty 144 (194)
.+...+..+-..+...|++++|...|.+..+. .|+ ...|..+-.+|...|++++|...++..... .+.+...|
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-DGGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-CccCHHHH
Confidence 46778888899999999999999999998765 466 688999999999999999999999988665 23356778
Q ss_pred HHHHHhhCCCCchHHhHHHHHhhhcccccccCCc
Q 029406 145 RVILKGLIPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 145 ~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
..+...+...|+ .+.|...++......|.
T Consensus 103 ~~~a~~~~~~~~-----~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 103 YRRSQALEKLGR-----LDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHHHHHTC-----HHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCC-----HHHHHHHHHHHHHcCCC
Confidence 888888888899 88888888877655543
No 109
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.52 E-value=0.0013 Score=48.36 Aligned_cols=127 Identities=8% Similarity=0.016 Sum_probs=61.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC
Q 029406 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 119 (194)
+-..+.+.|++++|+..|+...+ ..| +...|..+=..|...|++++|...|++..+.. +-+..+|..+-..|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQ---KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 34445556666666666666652 223 45556666666666666666666666665542 22445555555555444
Q ss_pred CCh--HHHHHHHHHhHhCCCCCChhh--HHHHHHhhCCCCchHHhHHHHHhhhcccccccCCchh
Q 029406 120 GLP--SEAMFIYNEMRSSPATPISLP--FRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180 (194)
Q Consensus 120 g~~--~~a~~l~~~M~~~g~~p~~~t--y~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~ 180 (194)
|.. ..+...+.... .|+... +...-.++...|+ .++|...|+......|..+
T Consensus 136 ~~~~~~~~~~~~~~~~----~~~~~~~a~~~~g~~~~~~~~-----~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS----SPTKMQYARYRDGLSKLFTTR-----YEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHT-----HHHHHHHHHHHTTTSCCHH
T ss_pred hHHHHHHHHHHHHHHh----CCCchhHHHHHHHHHHHHccC-----HHHHHHHHHHHHHhCCCHH
Confidence 322 22233333321 222222 1112222233444 6677777776665555443
No 110
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.51 E-value=0.0041 Score=48.08 Aligned_cols=137 Identities=9% Similarity=0.008 Sum_probs=96.0
Q ss_pred hHHHHHHHHHhc-CCHhHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCH-----
Q 029406 37 DLVSVLAEFQRQ-DQVFLCMKLYDVVRKEIWYRPD----MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ----- 106 (194)
Q Consensus 37 ~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~----- 106 (194)
.+..+-..|... |++++|+..|+....-..-..+ ..+|+.+-..|.+.|++++|+..|++..+..-....
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 344566667775 9999999999988631111111 356888899999999999999999999875433221
Q ss_pred -HhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCC---h---hhHHHHHHhhC--CCCchHHhHHHHHhhhcccccccCC
Q 029406 107 -HTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPI---S---LPFRVILKGLI--PYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 107 -~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~---~---~ty~~ll~~~~--~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
..|..+..+|...|+++.|...|+...+- .|+ . ..+..++..+. ..++ .+.|...|+.+...+|
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~-----~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQ-----LSEHCKEFDNFMRLDK 271 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTT-----HHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHH-----HHHHHHHhccCCccHH
Confidence 25778888999999999999999997653 222 1 23445556554 4455 8888888988776666
Q ss_pred chh
Q 029406 178 PED 180 (194)
Q Consensus 178 ~~~ 180 (194)
...
T Consensus 272 ~~~ 274 (292)
T 1qqe_A 272 WKI 274 (292)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 111
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.50 E-value=0.00064 Score=47.78 Aligned_cols=99 Identities=10% Similarity=-0.051 Sum_probs=82.5
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHH
Q 029406 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILK 149 (194)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~ 149 (194)
+...|..+-..|.+.|++++|+..|.+..+.. +-+...|..+-.+|.+.|++++|...|+...+.. +-+...|..+-.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45677788888999999999999999988764 3378899999999999999999999999987652 335788888999
Q ss_pred hhCCCCchHHhHHHHHhhhccccccc
Q 029406 150 GLIPYPEFREKVKDDFLELFPDMIVY 175 (194)
Q Consensus 150 ~~~~~g~~~~~~~~~a~~~~~~m~~~ 175 (194)
.|...|+ .+.|.+.|+.....
T Consensus 88 ~~~~~g~-----~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMAD-----YKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTC-----HHHHHHHHHHHHHH
T ss_pred HHHHccC-----HHHHHHHHHHHHHh
Confidence 9999999 88888887766443
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.48 E-value=0.00063 Score=57.69 Aligned_cols=121 Identities=5% Similarity=-0.135 Sum_probs=85.2
Q ss_pred cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHH
Q 029406 48 QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMF 127 (194)
Q Consensus 48 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 127 (194)
.|++++|.+.|++..+ -.+-+...|..+-..|.+.|++++|...|++..+.. +-+...|..+-.+|...|++++|..
T Consensus 2 ~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4788899999998862 122357888999999999999999999999988753 3367889999999999999999999
Q ss_pred HHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 128 IYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 128 l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
.|++..+.. +-+...|..+-..|.+.|+ .++|.+.++......|
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al~~~p 122 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQ-----AEAAAAAYTRAHQLLP 122 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHCT
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhCC
Confidence 999987652 3457788899999999999 8888888887655444
No 113
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.47 E-value=0.0011 Score=46.22 Aligned_cols=100 Identities=10% Similarity=-0.087 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHH
Q 029406 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILK 149 (194)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~ 149 (194)
+...+..+-..+.+.|++++|...|.+..... +.+...|..+-.+|...|++++|...|+...... +-+...|..+-.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 34566677778889999999999999987654 3378889999999999999999999999987652 335678888888
Q ss_pred hhCCCCchHHhHHHHHhhhcccccccC
Q 029406 150 GLIPYPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 150 ~~~~~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
+|...|+ .++|.+.|+......
T Consensus 98 ~~~~~g~-----~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 98 CLLQXGE-----LAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHTTC-----HHHHHHHHHHHHHHH
T ss_pred HHHHcCC-----HHHHHHHHHHHHHHC
Confidence 9999999 888888888765543
No 114
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.46 E-value=0.00096 Score=45.82 Aligned_cols=99 Identities=11% Similarity=-0.041 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHh
Q 029406 71 MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG 150 (194)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~ 150 (194)
...+..+-..+.+.|++++|...|.+..... +.+...|..+-.+|.+.|++++|...|+...... +-+...|..+-.+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 3445556677888999999999999988754 3377889999999999999999999999987652 3456778888888
Q ss_pred hCCCCchHHhHHHHHhhhcccccccC
Q 029406 151 LIPYPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 151 ~~~~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
|...|+ .+.|.+.|+......
T Consensus 96 ~~~~g~-----~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 96 HLQLGD-----LDGAESGFYSARALA 116 (142)
T ss_dssp HHHTTC-----HHHHHHHHHHHHHHH
T ss_pred HHHcCC-----HHHHHHHHHHHHHhC
Confidence 999999 888888888765443
No 115
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.46 E-value=0.0041 Score=50.58 Aligned_cols=128 Identities=10% Similarity=0.009 Sum_probs=89.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+..+-..+...|++++|+..|+...+ . -+-+...|..+-.++.+.|++++|+..|+++.+..-. +...|+.+-.+|.
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~-l-dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~ 245 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILN-Q-DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVIS 245 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH-h-CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 33445556677888999999988873 1 2235778888888888889999999999888876533 6778888888888
Q ss_pred c-CCChHHH-----HHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 118 D-SGLPSEA-----MFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 118 ~-~g~~~~a-----~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
+ .|..++| +..|+..... -+-+...|+.+...+...|. ...+.+.+.+..+
T Consensus 246 ~l~~~~~eA~~~~el~~~~~Al~l-~P~~~~a~~~l~~ll~~~g~---~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 246 NTTGYNDRAVLEREVQYTLEMIKL-VPHNESAWNYLKGILQDRGL---SKYPNLLNQLLDL 302 (382)
T ss_dssp HTTCSCSHHHHHHHHHHHHHHHHH-STTCHHHHHHHHHHHTTTCG---GGCHHHHHHHHHH
T ss_pred HhcCcchHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHccCc---cchHHHHHHHHHh
Confidence 8 5655777 4777777765 23346788888888888775 1134444444444
No 116
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.44 E-value=0.0046 Score=41.71 Aligned_cols=99 Identities=17% Similarity=0.102 Sum_probs=72.5
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCCC----HHhHHHHHH
Q 029406 42 LAEFQRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREE--VLFD----QHTFGDIIR 114 (194)
Q Consensus 42 l~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p~----~~ty~~li~ 114 (194)
=..+.+.|++++|++.|+...+ +.| +...|+.+=.+|.+.|++++|+..|.+..+.. ..++ ..+|..+-.
T Consensus 15 G~~~~~~~~~~~A~~~y~~Al~---~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~ 91 (127)
T 4gcn_A 15 GNAAYKQKDFEKAHVHYDKAIE---LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGN 91 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 3456788999999999998873 234 57778888888999999999999998877532 2222 246777778
Q ss_pred HHhcCCChHHHHHHHHHhHhCCCCCChhhHH
Q 029406 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFR 145 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~ 145 (194)
+|...|++++|...|+..... .||..+..
T Consensus 92 ~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 92 AFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 888889999999998886543 35544433
No 117
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.43 E-value=0.0046 Score=47.68 Aligned_cols=130 Identities=12% Similarity=0.076 Sum_probs=92.1
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhhcC--CCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCCC-----HHhHH
Q 029406 41 VLAEFQRQDQVFLCMKLYDVVRKEIW--YRPD--MFFYRDMLMMLARNKKVVEAKQVWEDLKRE-EVLFD-----QHTFG 110 (194)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~~~--~~p~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~-----~~ty~ 110 (194)
+-..+...|++++|...|+...+... ..+. ..+|+.+=..|...|++++|...|.+.... ...|+ ..+|+
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 33445677899999999998862111 1122 458889999999999999999999988732 11222 26899
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHh----CCCCC-ChhhHHHHHHhhCCCCchHHhH---HHHHhhhcc
Q 029406 111 DIIRAFSDSGLPSEAMFIYNEMRS----SPATP-ISLPFRVILKGLIPYPEFREKV---KDDFLELFP 170 (194)
Q Consensus 111 ~li~~~~~~g~~~~a~~l~~~M~~----~g~~p-~~~ty~~ll~~~~~~g~~~~~~---~~~a~~~~~ 170 (194)
.+-..|.+.|++++|...+++..+ .+... -..+|..+-..|.+.|+..+++ .+.|..+++
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999998643 22222 2567888888899999843331 345555554
No 118
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.43 E-value=0.00014 Score=50.86 Aligned_cols=105 Identities=9% Similarity=-0.158 Sum_probs=82.7
Q ss_pred hcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHH
Q 029406 47 RQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEA 125 (194)
Q Consensus 47 ~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a 125 (194)
..|+++.|+..++.... ..|+ ...+..+=..|.+.|++++|...|.+..+.. +-+..+|..+-.+|.+.|++++|
T Consensus 9 ~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 9 SKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 45788889888887741 2232 4455567788999999999999999988764 33788999999999999999999
Q ss_pred HHHHHHhHhCCCCCChhhHHHHHHhhCCCCc
Q 029406 126 MFIYNEMRSSPATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 126 ~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~ 156 (194)
...|+...+.. +-+..+|..+-..|.+.|+
T Consensus 85 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 114 (150)
T 4ga2_A 85 VECYRRSVELN-PTQKDLVLKIAELLCKNDV 114 (150)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 99999987652 2246788888888888777
No 119
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.43 E-value=0.012 Score=41.45 Aligned_cols=126 Identities=4% Similarity=0.020 Sum_probs=96.6
Q ss_pred HHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH-HhcCCCh-
Q 029406 45 FQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA-FSDSGLP- 122 (194)
Q Consensus 45 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~-~~~~g~~- 122 (194)
+...|++++|...|+...+. .+.+...|..+-..|...|++++|...|.+..... +.+...|..+..+ |...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcc
Confidence 45678899999999988632 23467889999999999999999999999988654 2367778888888 7899998
Q ss_pred -HHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCch
Q 029406 123 -SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPE 179 (194)
Q Consensus 123 -~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~ 179 (194)
++|..+|+...+.. +-+...|..+...+...|+ .+.|...++......|..
T Consensus 97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQAN-----YAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHTCCTT
T ss_pred hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccc-----HHHHHHHHHHHHhhCCCC
Confidence 99999999987652 3346788888889999999 888888888876655543
No 120
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.40 E-value=0.0034 Score=46.05 Aligned_cols=94 Identities=9% Similarity=0.067 Sum_probs=62.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCC
Q 029406 74 YRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIP 153 (194)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~ 153 (194)
++.+=..|.+.|++++|...|.+..+.. +-+...|..+-..|...|++++|...|+...+.. +-+..+|..+-..|..
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3446667778888888888888877653 2367788888888888888888888888876642 3345667777666654
Q ss_pred CCchHHhHHHHHhhhcccc
Q 029406 154 YPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 154 ~g~~~~~~~~~a~~~~~~m 172 (194)
.|+ .....+...+...
T Consensus 135 ~~~---~~~~~~~~~~~~~ 150 (208)
T 3urz_A 135 TAE---QEKKKLETDYKKL 150 (208)
T ss_dssp HHH---HHHHHHHHHHC--
T ss_pred HhH---HHHHHHHHHHHHH
Confidence 433 1133444445543
No 121
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.39 E-value=0.0025 Score=50.97 Aligned_cols=130 Identities=8% Similarity=-0.018 Sum_probs=95.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CCC----HH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-----MFFYRDMLMMLARNKKVVEAKQVWEDLKREEV-LFD----QH 107 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~----~~ 107 (194)
+..+-..+...|+++.|...++...+-..-.++ ..+++.+=..|...|++++|...|.+.....- .++ ..
T Consensus 146 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 225 (383)
T 3ulq_A 146 FFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGR 225 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 345566677789999999999887632222222 45777788889999999999999988774321 112 24
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHh----CCC-CCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 108 TFGDIIRAFSDSGLPSEAMFIYNEMRS----SPA-TPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 108 ty~~li~~~~~~g~~~~a~~l~~~M~~----~g~-~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
+|..+-.+|...|++++|...|++..+ .+. +....++..+-..+.+.|+ .+.|.+.++..
T Consensus 226 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~a 290 (383)
T 3ulq_A 226 TLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK-----IDKAHEYHSKG 290 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTC-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCC-----HHHHHHHHHHH
Confidence 788899999999999999999998765 233 3346778888899999999 77777776654
No 122
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.39 E-value=0.0029 Score=42.37 Aligned_cols=96 Identities=9% Similarity=-0.030 Sum_probs=76.0
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
.+...-..+.+.|++++|...|+...+ . -+-+...|..+=.++.+.|++++|+..|++..+.. +-+...+..+-.+|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~-~-~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQ-K-EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH-H-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH-H-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344555677889999999999999873 1 22367788888888889999999999999887763 22667888899999
Q ss_pred hcCCChHHHHHHHHHhHhC
Q 029406 117 SDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~ 135 (194)
...|++++|...|+...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999987653
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.35 E-value=0.0022 Score=44.28 Aligned_cols=99 Identities=7% Similarity=-0.068 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhh
Q 029406 72 FFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151 (194)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~ 151 (194)
..|..+-..+...|++++|...|.+..... +.+..+|..+..+|...|++++|...|+...+.. +.+...|..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 456667778889999999999999987753 3368889999999999999999999999987652 44577888888899
Q ss_pred CCCCchHHhHHHHHhhhcccccccCC
Q 029406 152 IPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 152 ~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
...|+ .+.|.+.++......|
T Consensus 92 ~~~~~-----~~~A~~~~~~a~~~~p 112 (166)
T 1a17_A 92 MALGK-----FRAALRDYETVVKVKP 112 (166)
T ss_dssp HHTTC-----HHHHHHHHHHHHHHST
T ss_pred HHhcc-----HHHHHHHHHHHHHhCC
Confidence 99999 8888888887765444
No 124
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.0018 Score=43.11 Aligned_cols=98 Identities=12% Similarity=-0.026 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhh
Q 029406 72 FFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151 (194)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~ 151 (194)
..|..+=..+.+.|++++|+..|.+..+.. +.+...|..+-.+|.+.|++++|...|+...+.. +-+...|..+-..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 455666677889999999999999988764 3378899999999999999999999999987652 33567888888899
Q ss_pred CCCCchHHhHHHHHhhhcccccccC
Q 029406 152 IPYPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 152 ~~~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
...|+ .+.|.+.++......
T Consensus 83 ~~~~~-----~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKE-----YASALETLDAARTKD 102 (126)
T ss_dssp HHTTC-----HHHHHHHHHHHHHHH
T ss_pred HHHhC-----HHHHHHHHHHHHHhC
Confidence 99999 888888888765544
No 125
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.32 E-value=0.00097 Score=52.95 Aligned_cols=131 Identities=4% Similarity=-0.184 Sum_probs=96.2
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC----CCC-CHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD----MFFYRDMLMMLARNKKVVEAKQVWEDLKREE----VLF-DQH 107 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g----~~p-~~~ 107 (194)
.+..+-..+...|++++|...|+...+...-.++ ..+|..+-..|...|++++|...+.+..... ..+ ...
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 3455667778899999999999988632222233 3478888889999999999999999876432 111 156
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHhC----CCCC-ChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 108 TFGDIIRAFSDSGLPSEAMFIYNEMRSS----PATP-ISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 108 ty~~li~~~~~~g~~~~a~~l~~~M~~~----g~~p-~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
++..+-..|...|++++|...|+...+. +..+ ...+|..+...|...|+ .+.|.+.++..
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~a 333 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN-----HDQAMHFAEKH 333 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHH
Confidence 8889999999999999999999987542 2221 15677888888888898 66666666553
No 126
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.30 E-value=0.0018 Score=44.04 Aligned_cols=130 Identities=4% Similarity=-0.171 Sum_probs=92.7
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC----CCC-CHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD----MFFYRDMLMMLARNKKVVEAKQVWEDLKREE----VLF-DQH 107 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g----~~p-~~~ 107 (194)
.+..+-..+...|++++|...|+.......-.++ ...+..+-..|...|++++|...+.+..... -.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3445666677889999999999887632111122 2477888888999999999999999876532 111 245
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHh----CCCCC-ChhhHHHHHHhhCCCCchHHhHHHHHhhhccc
Q 029406 108 TFGDIIRAFSDSGLPSEAMFIYNEMRS----SPATP-ISLPFRVILKGLIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 108 ty~~li~~~~~~g~~~~a~~l~~~M~~----~g~~p-~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~ 171 (194)
++..+-..|...|++++|...++...+ .+..+ ...++..+...+...|+ .+.|.+.++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~ 154 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN-----HDQAMHFAEK 154 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC-----HHHHHHHHHH
Confidence 788888999999999999999988643 22221 24567777788888888 7777776654
No 127
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.30 E-value=0.015 Score=42.04 Aligned_cols=99 Identities=8% Similarity=-0.100 Sum_probs=81.5
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-------------
Q 029406 35 KSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE------------- 101 (194)
Q Consensus 35 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g------------- 101 (194)
...+..+-..+.+.|++++|...|+.... . .+.+...|..+-.+|...|++++|...|.+..+..
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 114 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSIN-R-DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL 114 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTB
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhcc
Confidence 34566777888899999999999999973 2 23467889999999999999999999999988743
Q ss_pred -CCC-CHHhHHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 102 -VLF-DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 102 -~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
..| +...|..+-.+|.+.|++++|...|+...+.
T Consensus 115 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 115 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 111 2367889999999999999999999998765
No 128
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.30 E-value=0.0061 Score=57.25 Aligned_cols=109 Identities=13% Similarity=0.152 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+..++.+|.+.|++++|.++|..-++ .. ++....+.+..+|++.+++++...+. -.|+...|..+-..|.
T Consensus 1137 y~eVa~~~~~lGkyEEAIeyL~mArk-~~--~e~~Idt~LafaYAKl~rleele~fI-------~~~n~ad~~~iGd~le 1206 (1630)
T 1xi4_A 1137 YMEVVQAANTSGNWEELVKYLQMARK-KA--RESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCY 1206 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh-hc--ccccccHHHHHHHHhhcCHHHHHHHH-------hCCCHHHHHHHHHHHH
Confidence 44455555555555555555544331 11 22222222444444444443322221 0223333444444444
Q ss_pred cCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcc
Q 029406 118 DSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFP 170 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~ 170 (194)
..|+++.|..+|... ..|..+...|++.|+ .+.|.+.++
T Consensus 1207 ~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge-----~q~AIEaar 1245 (1630)
T 1xi4_A 1207 DEKMYDAAKLLYNNV---------SNFGRLASTLVHLGE-----YQAAVDGAR 1245 (1630)
T ss_pred hcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCC-----HHHHHHHHH
Confidence 445555555555442 356666666666666 555544444
No 129
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.29 E-value=0.0067 Score=44.91 Aligned_cols=132 Identities=8% Similarity=-0.031 Sum_probs=89.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCCCH-HhHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREE-VLFDQ-HTFGDIIR 114 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~-~ty~~li~ 114 (194)
+...-..+.+.|++++|...|+.+.+.....|. ...+..+-.+|.+.|++++|+..|++..+.. -.|.. ..+-.+-.
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~ 86 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGL 86 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHH
Confidence 344555678899999999999999843322232 3567778899999999999999999988653 22221 12333333
Q ss_pred HHh------------------cCCChHHHHHHHHHhHhCCCCCCh-hhHH-----------------HHHHhhCCCCchH
Q 029406 115 AFS------------------DSGLPSEAMFIYNEMRSSPATPIS-LPFR-----------------VILKGLIPYPEFR 158 (194)
Q Consensus 115 ~~~------------------~~g~~~~a~~l~~~M~~~g~~p~~-~ty~-----------------~ll~~~~~~g~~~ 158 (194)
++. ..|+.++|...|+...+. -|+. ..+. .+-..|.+.|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~-- 162 (225)
T 2yhc_A 87 TNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA-- 162 (225)
T ss_dssp HHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--
Confidence 333 367899999999998775 2332 2222 33445667788
Q ss_pred HhHHHHHhhhcccccccC
Q 029406 159 EKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 159 ~~~~~~a~~~~~~m~~~~ 176 (194)
.+.|...|+.+....
T Consensus 163 ---~~~A~~~~~~~l~~~ 177 (225)
T 2yhc_A 163 ---WVAVVNRVEGMLRDY 177 (225)
T ss_dssp ---HHHHHHHHHHHHHHS
T ss_pred ---HHHHHHHHHHHHHHC
Confidence 788888888765443
No 130
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.29 E-value=0.004 Score=52.24 Aligned_cols=129 Identities=10% Similarity=-0.004 Sum_probs=92.9
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHH-HHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMM-LARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~-~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
.+......+.+.|+++.|.++|+...+ . .|+ ...|...... +...|++++|..+|+...+.. +-+...|..++.
T Consensus 358 ~~~~~~~~~~~~~~~~~A~~~~~~Al~-~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~ 433 (530)
T 2ooe_A 358 VYIQYMKFARRAEGIKSGRMIFKKARE-D--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYID 433 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-C--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHh-c--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 355566666778999999999999973 2 232 2333222222 336899999999999887653 236789999999
Q ss_pred HHhcCCChHHHHHHHHHhHhCC-CCCC--hhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 115 AFSDSGLPSEAMFIYNEMRSSP-ATPI--SLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~g-~~p~--~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
.+.+.|+.++|..+|+.....+ ..|+ ...|...+.-....|+ .+.+..++..+..
T Consensus 434 ~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~-----~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 434 YLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD-----LASILKVEKRRFT 491 (530)
T ss_dssp HHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC-----HHHHHHHHHHHHH
T ss_pred HHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHH
Confidence 9999999999999999987763 3443 3477777777777888 6666666665543
No 131
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.28 E-value=0.0018 Score=49.59 Aligned_cols=132 Identities=5% Similarity=-0.152 Sum_probs=97.3
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CCC----HH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD----MFFYRDMLMMLARNKKVVEAKQVWEDLKREEV-LFD----QH 107 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~----~~ 107 (194)
.+..+-..+...|++++|...|+...+...-.++ ..++..+-..|...|++++|...+.+.....- .++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 4456667778899999999999988532111122 34788888999999999999999998764321 112 56
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHhC----CCC-CChhhHHHHHHhhCCCCchHHhHHHHHhhhccccc
Q 029406 108 TFGDIIRAFSDSGLPSEAMFIYNEMRSS----PAT-PISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 108 ty~~li~~~~~~g~~~~a~~l~~~M~~~----g~~-p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
++..+-..|...|++++|...++..... +-. ....++..+...|...|+ .+.|.+.++...
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~a~ 330 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN-----HDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC-----hHHHHHHHHHHH
Confidence 7888999999999999999999987542 211 124577788888998999 888888777543
No 132
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.25 E-value=0.0014 Score=47.08 Aligned_cols=132 Identities=7% Similarity=-0.089 Sum_probs=93.4
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHh---hcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----CCCC--C
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRK---EIWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKRE----EVLF--D 105 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p--~ 105 (194)
..+..+-..+...|++++|...|+.... ..+..| ....++.+=..|...|++++|...|.+.... +-.| .
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3445566677789999999999998863 122222 3556777888899999999999999877653 2111 2
Q ss_pred HHhHHHHHHHHhcCCChHHHHHHHHHhHh----CCCC-CChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 106 QHTFGDIIRAFSDSGLPSEAMFIYNEMRS----SPAT-PISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 106 ~~ty~~li~~~~~~g~~~~a~~l~~~M~~----~g~~-p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
...+..+-..|...|++++|...+++... .+.. .-..++..+-..+...|+ .+.|.+.+++.
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~a 173 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN-----LLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC-----HHHHHHHHHHH
Confidence 45688888999999999999999988653 2221 113456777788888999 66666665543
No 133
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.24 E-value=0.0025 Score=50.93 Aligned_cols=130 Identities=10% Similarity=-0.033 Sum_probs=93.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCC-----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----CCC-CCHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRP-----DMFFYRDMLMMLARNKKVVEAKQVWEDLKRE----EVL-FDQH 107 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~-p~~~ 107 (194)
+..+-..+...|+++.|...++...+...-.+ ...+++.+=..|...|++++|...|.+..+. +-. ....
T Consensus 144 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 223 (378)
T 3q15_A 144 HFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAI 223 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 33455667788999999999888753222112 2457777888889999999999999877653 211 1235
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHh----CCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 108 TFGDIIRAFSDSGLPSEAMFIYNEMRS----SPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 108 ty~~li~~~~~~g~~~~a~~l~~~M~~----~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
+++.+-.+|...|++++|...|++..+ .+.+....++..+-..+.+.|+ .+.|.+.++..
T Consensus 224 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~a 287 (378)
T 3q15_A 224 SLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQ-----TQKAFQFIEEG 287 (378)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTC-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCC-----HHHHHHHHHHH
Confidence 788888899999999999999998765 1223336778888888999999 66666666554
No 134
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.23 E-value=0.0027 Score=42.10 Aligned_cols=96 Identities=7% Similarity=-0.070 Sum_probs=73.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCC-CC-CHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCC---hhhHHHHHHhh
Q 029406 77 MLMMLARNKKVVEAKQVWEDLKREEV-LF-DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPI---SLPFRVILKGL 151 (194)
Q Consensus 77 li~~~~~~g~~~~a~~l~~~m~~~g~-~p-~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~---~~ty~~ll~~~ 151 (194)
+-..+.+.|++++|...|.+.....- .| ....+..+-.+|.+.|++++|...|+...... +-+ ...+..+-.++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHH
Confidence 44567789999999999999887531 11 11477788899999999999999999987652 222 45677778888
Q ss_pred CCCCchHHhHHHHHhhhcccccccCCc
Q 029406 152 IPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 152 ~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
...|+ .+.|...|+......|.
T Consensus 87 ~~~g~-----~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 87 YGEGK-----NTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHTTC-----HHHHHHHHHHHHHHSTT
T ss_pred HHcCC-----HHHHHHHHHHHHHHCCC
Confidence 89999 89999998887655443
No 135
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.23 E-value=0.0015 Score=57.11 Aligned_cols=132 Identities=5% Similarity=-0.113 Sum_probs=103.9
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+..+-..+...|++++|...|+...+ . -+-+...|..+=.+|.+.|++++|...|++..+.. +-+...|..+-.+
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~-~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~ 510 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAE-R-VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAAT 510 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH-H-HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhc-c-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3455566678889999999999999873 1 22357788888888999999999999999988764 2256788889999
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
|.+.|++++ ...|+...+.. +-+...|..+-..+.+.|+ .++|.+.++.....+|
T Consensus 511 ~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~-----~~~A~~~~~~al~l~P 565 (681)
T 2pzi_A 511 AELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGD-----RVGAVRTLDEVPPTSR 565 (681)
T ss_dssp HHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHTSCTTST
T ss_pred HHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCC-----HHHHHHHHHhhcccCc
Confidence 999999999 99999876642 3356788888888999999 8888888887765554
No 136
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.22 E-value=0.023 Score=41.73 Aligned_cols=52 Identities=12% Similarity=-0.011 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHhcCCC-CCHHhHHHHHHHHhc----CCChHHHHHHHHHhHhC
Q 029406 84 NKKVVEAKQVWEDLKREEVL-FDQHTFGDIIRAFSD----SGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 84 ~g~~~~a~~l~~~m~~~g~~-p~~~ty~~li~~~~~----~g~~~~a~~l~~~M~~~ 135 (194)
.+++++|...|.+..+.|.. -+...+..|-..|.. .+++++|..+|+...+.
T Consensus 102 ~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 102 ATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp SCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 44455555555444443311 013344444444444 34455555555554444
No 137
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.21 E-value=0.0011 Score=55.45 Aligned_cols=117 Identities=7% Similarity=-0.072 Sum_probs=86.0
Q ss_pred HHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHH
Q 029406 45 FQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSE 124 (194)
Q Consensus 45 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 124 (194)
+.+.|++++|.+.|+...+ . .+-+...|..+-.+|.+.|++++|+..+.+..+.. +-+...|..+-.+|.+.|++++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~-~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIE-L-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHH-h-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 4578999999999999973 2 22358899999999999999999999999998763 3367889999999999999999
Q ss_pred HHHHHHHhHhCCCCCChhhHHHHHHh--hCCCCchHHhHHHHHhhhcc
Q 029406 125 AMFIYNEMRSSPATPISLPFRVILKG--LIPYPEFREKVKDDFLELFP 170 (194)
Q Consensus 125 a~~l~~~M~~~g~~p~~~ty~~ll~~--~~~~g~~~~~~~~~a~~~~~ 170 (194)
|...|++..+.. +-+...+..+-.+ +.+.|+ .++|.+.++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~-----~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKA-----FERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHH-----HCCC-----
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH-----HHHHhcccc
Confidence 999999986642 2123344444433 665566 666666655
No 138
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.17 E-value=0.0022 Score=51.34 Aligned_cols=132 Identities=4% Similarity=-0.156 Sum_probs=97.2
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CC---CCHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD----MFFYRDMLMMLARNKKVVEAKQVWEDLKREE--VL---FDQH 107 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~---p~~~ 107 (194)
.+..+-..+...|++++|...|+...+...-.++ ...+..+-..|...|++++|...|++..... .. ....
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3445667778899999999999988632111122 3378888999999999999999998877532 11 1256
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHhC----CCC-CChhhHHHHHHhhCCCCchHHhHHHHHhhhccccc
Q 029406 108 TFGDIIRAFSDSGLPSEAMFIYNEMRSS----PAT-PISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 108 ty~~li~~~~~~g~~~~a~~l~~~M~~~----g~~-p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
++..+-..|...|++++|...|+..... +.. ....+|..+...|...|+ .+.|.+.++...
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al 370 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGG-----HERALKYAEQHL 370 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcc-----HHHHHHHHHHHH
Confidence 8889999999999999999999987542 211 124578888888999999 777777766543
No 139
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.15 E-value=0.0042 Score=48.41 Aligned_cols=131 Identities=6% Similarity=-0.077 Sum_probs=83.6
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhh---cCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC----CCC-CHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKE---IWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREE----VLF-DQH 107 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g----~~p-~~~ 107 (194)
.+..+-..|.+.|++++|+..|+...+- .|-.+ -..+++.+=..|.. |++++|+..|.+..... -.+ -..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 3445566677778888888888876421 11111 13466667777777 88888888888766421 111 145
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHh----CCCCCC-hhhHHHHHHhhCCCCchHHhHHHHHhhhccccc
Q 029406 108 TFGDIIRAFSDSGLPSEAMFIYNEMRS----SPATPI-SLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 108 ty~~li~~~~~~g~~~~a~~l~~~M~~----~g~~p~-~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
+|+.+-..|.+.|++++|...|++... .+..+. ..+|..+...+...|+ .+.|...|+...
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~-----~~~A~~~~~~al 222 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD-----YVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHh
Confidence 788888888888888888888887654 222222 2255556666666788 677777666544
No 140
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.13 E-value=0.0075 Score=48.11 Aligned_cols=133 Identities=7% Similarity=-0.052 Sum_probs=90.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----CC-CCCHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD----MFFYRDMLMMLARNKKVVEAKQVWEDLKRE----EV-LFDQHT 108 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~-~p~~~t 108 (194)
+..+-..|...|++++|...|+...+...-.++ ..+++.+=..|...|++++|...|.+.... +. +....+
T Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 266 (383)
T 3ulq_A 187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQA 266 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 344556677789999999998887532111122 246777888888999999999999887762 33 335677
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHhC----CCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 109 FGDIIRAFSDSGLPSEAMFIYNEMRSS----PATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 109 y~~li~~~~~~g~~~~a~~l~~~M~~~----g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
+..+-..|.+.|++++|...++...+. +-+.....+..+-..+...|+. ...+.|..+++..
T Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~al~~~~~~ 332 (383)
T 3ulq_A 267 YFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDE--EAIQGFFDFLESK 332 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCH--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHC
Confidence 889999999999999999998876432 2222233456666777777762 4455666666644
No 141
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.07 E-value=0.0034 Score=42.08 Aligned_cols=97 Identities=9% Similarity=0.038 Sum_probs=76.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCC
Q 029406 74 YRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIP 153 (194)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~ 153 (194)
+..+-..+.+.|++++|...|++..+.. +-+...|..+-.++...|++++|...|+...+.. +-+...+..+-..+..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3445567788999999999999988753 3377889999999999999999999999986652 3356788888888988
Q ss_pred CCchHHhHHHHHhhhcccccccCC
Q 029406 154 YPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 154 ~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
.|+ .++|...++......|
T Consensus 98 ~g~-----~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 98 EHN-----ANAALASLRAWLLSQP 116 (121)
T ss_dssp HHH-----HHHHHHHHHHHHC---
T ss_pred cCC-----HHHHHHHHHHHHHhCc
Confidence 888 8888888887655443
No 142
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.07 E-value=0.0018 Score=46.11 Aligned_cols=115 Identities=9% Similarity=-0.020 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHH-HHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMM-LARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
+..+-..+...|++++|...|+.... ..|+...+..+-.. +.+.+...+|...|++..+.. +-+...+..+-.+|
T Consensus 43 ~~~la~~~~~~g~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~ 118 (176)
T 2r5s_A 43 KLAKADCLLETKQFELAQELLATIPL---EYQDNSYKSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQY 118 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTCCG---GGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhhh---ccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 44455556666777777777766642 11233222211111 111112223555666555432 12456666677777
Q ss_pred hcCCChHHHHHHHHHhHhCCCC-CChhhHHHHHHhhCCCCc
Q 029406 117 SDSGLPSEAMFIYNEMRSSPAT-PISLPFRVILKGLIPYPE 156 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~-p~~~ty~~ll~~~~~~g~ 156 (194)
...|++++|...|+...+..=. .+...+..+...+...|+
T Consensus 119 ~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 119 NQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ 159 (176)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred HHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC
Confidence 7777777777777766554211 124456666666666666
No 143
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.07 E-value=0.0043 Score=41.87 Aligned_cols=105 Identities=6% Similarity=-0.017 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC--CCCCC----hhhHHH
Q 029406 73 FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS--PATPI----SLPFRV 146 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~--g~~p~----~~ty~~ 146 (194)
.+..+=..+.+.|++++|+..|.+..+.. +-+...|+.+-.+|.+.|++++|...|+...+. ...++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34445567889999999999999988753 336788999999999999999999999987543 12222 235666
Q ss_pred HHHhhCCCCchHHhHHHHHhhhcccccccCCchhhhh
Q 029406 147 ILKGLIPYPEFREKVKDDFLELFPDMIVYDPPEDLFE 183 (194)
Q Consensus 147 ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 183 (194)
+-..+...|+ .+.|.+.|+......|.+++..
T Consensus 89 lg~~~~~~~~-----~~~A~~~~~kal~~~~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQND-----LSLAVQWFHRSLSEFRDPELVK 120 (127)
T ss_dssp HHHHHHHTTC-----HHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHHHHHHcCC-----HHHHHHHHHHHHhhCcCHHHHH
Confidence 6677888888 8899888887655555555544
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.05 E-value=0.0016 Score=46.70 Aligned_cols=120 Identities=10% Similarity=-0.014 Sum_probs=86.0
Q ss_pred HhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh----cCCC-CCHHhHHHHHHHHhcCC
Q 029406 46 QRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR----EEVL-FDQHTFGDIIRAFSDSG 120 (194)
Q Consensus 46 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~----~g~~-p~~~ty~~li~~~~~~g 120 (194)
...|++++|.+.++.+. . ........++.+-..|...|++++|...|.+... .+.. ....+++.+-..|...|
T Consensus 3 ~~~g~~~~A~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALL-A-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHH-T-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhc-C-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 46789999999776665 2 2223577888888999999999999999988775 2222 24467888889999999
Q ss_pred ChHHHHHHHHHhHh----CCCCC--ChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 121 LPSEAMFIYNEMRS----SPATP--ISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 121 ~~~~a~~l~~~M~~----~g~~p--~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
++++|...+++... .|-.| ....+..+-..+...|+ .+.|...++..
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-----~~~A~~~~~~a 133 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD-----LAGARQEYEKS 133 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHH
Confidence 99999999988644 23122 24567777788888888 77777776654
No 145
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.03 E-value=0.0016 Score=50.90 Aligned_cols=131 Identities=10% Similarity=-0.085 Sum_probs=94.7
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC--HHhHHHHHHHH
Q 029406 39 VSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFD--QHTFGDIIRAF 116 (194)
Q Consensus 39 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~--~~ty~~li~~~ 116 (194)
+.....+...|++++|.++|+.+. . ..|+......+=..|.+.+++++|+..|....... .|. ...+..+=.++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~-~--~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAP-V--AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSC-C--TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-h--cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence 345677888999999999999986 2 23544355555558889999999999998443322 111 24677788889
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCCh--hhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCc
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPIS--LPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~--~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
...|++++|+..|++.......|.. ......-.++.+.|+ .++|..+|+.+....|-
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr-----~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN-----ESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHSCC
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhcCCc
Confidence 9999999999999998754432542 234445556778888 99999999988766654
No 146
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.03 E-value=0.018 Score=44.39 Aligned_cols=94 Identities=7% Similarity=-0.124 Sum_probs=74.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+..+-..+.+.|++++|...|+...+ . .+-+...|..+-..|.+.|++++|...+.+..+.. +-+...|..+-.+|.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAIT-R-NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-H-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34455667788999999999998873 2 22367788888888999999999999999887653 336778888899999
Q ss_pred cCCChHHHHHHHHHhHh
Q 029406 118 DSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 118 ~~g~~~~a~~l~~~M~~ 134 (194)
..|++++|...|....+
T Consensus 84 ~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYS 100 (281)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999998887643
No 147
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.03 E-value=0.11 Score=43.00 Aligned_cols=82 Identities=10% Similarity=0.005 Sum_probs=40.2
Q ss_pred cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhc----C
Q 029406 48 QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLAR----NKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD----S 119 (194)
Q Consensus 48 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~----~ 119 (194)
.+++++|...|+... ..+ +...+..|=..|.. .+++++|...|.+..+.| +...+..+-..|.. .
T Consensus 128 ~~~~~~A~~~~~~a~-~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 200 (490)
T 2xm6_A 128 KVDKAESVKWFRLAA-EQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVE 200 (490)
T ss_dssp CCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CCCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCC
Confidence 445555555555554 222 23334444444443 445555555555555443 44445555555554 4
Q ss_pred CChHHHHHHHHHhHhCC
Q 029406 120 GLPSEAMFIYNEMRSSP 136 (194)
Q Consensus 120 g~~~~a~~l~~~M~~~g 136 (194)
++.++|..+|+...+.|
T Consensus 201 ~~~~~A~~~~~~a~~~~ 217 (490)
T 2xm6_A 201 RNDAISAQWYRKSATSG 217 (490)
T ss_dssp CCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHCC
Confidence 55555555555544443
No 148
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.00 E-value=0.0045 Score=49.21 Aligned_cols=126 Identities=13% Similarity=0.026 Sum_probs=75.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHH------------------HHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMF------------------FYRDMLMMLARNKKVVEAKQVWEDLKR 99 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~------------------~~~~li~~~~~~g~~~~a~~l~~~m~~ 99 (194)
+...-..+.+.|++++|...|+.... +.|+.. .|+.+=.+|.+.|++++|+..|.+..+
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIA---YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHH---HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH---HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33445566678999999999999763 335543 778888889999999999999999887
Q ss_pred cCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCC-hhhHHHHHHhhC-CCCchHHhHHHHHhhhcccccc
Q 029406 100 EEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPI-SLPFRVILKGLI-PYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 100 ~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~-~~ty~~ll~~~~-~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
.. +-+...|..+-.+|...|++++|...|+...+. .|+ ...+..+..... ..+. .+.+..++..|-.
T Consensus 259 ~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~-----~~~a~~~~~~~l~ 327 (338)
T 2if4_A 259 EE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKAL-----YQKQKEMYKGIFK 327 (338)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhC
Confidence 53 337789999999999999999999999997654 343 334444433322 2233 5566667766643
No 149
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.00 E-value=0.008 Score=48.54 Aligned_cols=117 Identities=9% Similarity=-0.024 Sum_probs=88.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhc-------------CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEI-------------WYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVL 103 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~-------------~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 103 (194)
+..+-..+.+.|++++|+..|+...+.. ...| +...|+.+-.+|.+.|++++|+..+.+..+.. +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence 4456667788999999999999886200 0222 45678888888999999999999999998753 2
Q ss_pred CCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCc
Q 029406 104 FDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 104 p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~ 156 (194)
-+...|..+-.+|.+.|++++|...|+...+.. +-+...+..+...+...++
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999986641 2245566666666655444
No 150
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=96.99 E-value=0.0016 Score=52.08 Aligned_cols=58 Identities=10% Similarity=-0.140 Sum_probs=25.3
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhh---cCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 029406 41 VLAEFQRQDQVFLCMKLYDVVRKE---IWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLK 98 (194)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~---~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 98 (194)
+-..+...|++++|...|+..... .+..| ....+..+-..|...|++++|...|.+..
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 153 (411)
T 4a1s_A 92 LGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHL 153 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 333444455555555555544311 01111 23344444445555555555555554443
No 151
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.97 E-value=0.011 Score=41.09 Aligned_cols=97 Identities=13% Similarity=0.016 Sum_probs=76.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhc------C----------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEI------W----------YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE 101 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~------~----------~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g 101 (194)
+...=..+.+.|+++.|+..|....... . .+.+...|..+-.+|.+.|++++|+..+.+..+..
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 3445556778999999999999886310 0 11234678888888999999999999999988764
Q ss_pred CCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 102 VLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 102 ~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
+.+...|..+-.+|...|++++|...|......
T Consensus 94 -p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 94 -ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 346788999999999999999999999987654
No 152
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.95 E-value=0.064 Score=39.24 Aligned_cols=130 Identities=7% Similarity=-0.094 Sum_probs=96.9
Q ss_pred hchhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHHhcCCCCCHHh
Q 029406 33 LLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNK----KVVEAKQVWEDLKREEVLFDQHT 108 (194)
Q Consensus 33 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g----~~~~a~~l~~~m~~~g~~p~~~t 108 (194)
.....+..+=..|...+++++|+..|+... +.| +...++.|=..|.. + ++++|...|.+..+.| +...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~-~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAA-AQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 334455555566667899999999999997 444 45566666666666 6 8999999999998877 6778
Q ss_pred HHHHHHHHhc----CCChHHHHHHHHHhHhCCCC-CChhhHHHHHHhhCC----CCchHHhHHHHHhhhccccccc
Q 029406 109 FGDIIRAFSD----SGLPSEAMFIYNEMRSSPAT-PISLPFRVILKGLIP----YPEFREKVKDDFLELFPDMIVY 175 (194)
Q Consensus 109 y~~li~~~~~----~g~~~~a~~l~~~M~~~g~~-p~~~ty~~ll~~~~~----~g~~~~~~~~~a~~~~~~m~~~ 175 (194)
+..|-..|.. .+++++|..+|+...+.|.. .+...+..|-..|.. .++ .+.|.++|+.....
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d-----~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED-----DVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC-----HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC-----HHHHHHHHHHHHHc
Confidence 8888888887 89999999999998877642 114556666555554 556 88888888876554
No 153
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=96.94 E-value=0.017 Score=45.69 Aligned_cols=95 Identities=3% Similarity=-0.124 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+..+-.++.+.|++++|+..|+...+ . .+.+...|..+=.+|...|++++|...|.+..+.. +-+...+..+-.+
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~-~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALE-L-DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 4556677788899999999999999973 2 23468889999999999999999999999988763 3367789999999
Q ss_pred HhcCCChHHHH-HHHHHhH
Q 029406 116 FSDSGLPSEAM-FIYNEMR 133 (194)
Q Consensus 116 ~~~~g~~~~a~-~l~~~M~ 133 (194)
+.+.|+.+++. .+|..|.
T Consensus 274 ~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 274 QQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 99999998884 4666664
No 154
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=96.94 E-value=0.13 Score=42.48 Aligned_cols=126 Identities=5% Similarity=-0.125 Sum_probs=80.6
Q ss_pred HHHHHHHHHh----cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCCCHHhH
Q 029406 38 LVSVLAEFQR----QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLAR----NKKVVEAKQVWEDLKREEVLFDQHTF 109 (194)
Q Consensus 38 ~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~ty 109 (194)
+..+=..|.. .+++++|...|+... ..+ +...+..|=..|.. .+++++|...|.+..+.| +...+
T Consensus 78 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 150 (490)
T 2xm6_A 78 EYVLGLRYMNGEGVPQDYAQAVIWYKKAA-LKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQ 150 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 3344444555 677788888887776 333 44555555556666 677888888888777766 55666
Q ss_pred HHHHHHHhc----CCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCC----CCchHHhHHHHHhhhcccccccCCc
Q 029406 110 GDIIRAFSD----SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIP----YPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 110 ~~li~~~~~----~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~----~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
..|-..|.. .+++++|..+|+...+.| +...+..|-..|.. .++ .+.|.++|+.....+.+
T Consensus 151 ~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~-----~~~A~~~~~~a~~~~~~ 219 (490)
T 2xm6_A 151 QSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERN-----DAISAQWYRKSATSGDE 219 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC-----HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcC-----HHHHHHHHHHHHHCCCH
Confidence 666667766 677888888888776665 44555555555544 556 66677766655444443
No 155
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.93 E-value=0.013 Score=55.20 Aligned_cols=118 Identities=9% Similarity=0.003 Sum_probs=88.9
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 35 KSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 35 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
+..+..+=.++...|++.+|++.|..- -|...|..++..|.+.|++++|.+.+....+.. ++....+.+..
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~Laf 1175 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 1175 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHH
Confidence 344566777888889999999998554 467788889999999999999999998766654 44444556999
Q ss_pred HHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccc
Q 029406 115 AFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
+|++.++++....+. + .|+...|..+-..|...|+ .+.|..+|....
T Consensus 1176 aYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~-----YeeA~~~Y~kA~ 1222 (1630)
T 1xi4_A 1176 ALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKM-----YDAAKLLYNNVS 1222 (1630)
T ss_pred HHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCC-----HHHHHHHHHhhh
Confidence 999998888644332 1 3456677778888888888 888888888654
No 156
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.92 E-value=0.00026 Score=47.03 Aligned_cols=88 Identities=10% Similarity=-0.102 Sum_probs=67.0
Q ss_pred hCCCHHHHHHHHHHHHhcC--CCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHh
Q 029406 83 RNKKVVEAKQVWEDLKREE--VLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREK 160 (194)
Q Consensus 83 ~~g~~~~a~~l~~~m~~~g--~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~ 160 (194)
..|++++|+..|.+..+.+ -+-+...|..+-.+|.+.|++++|...|+...+.. +-+...|..+-.++...|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~---- 76 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGR---- 76 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC----
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCC----
Confidence 4678899999999988764 23356789999999999999999999999987652 3346788888889999999
Q ss_pred HHHHHhhhcccccccC
Q 029406 161 VKDDFLELFPDMIVYD 176 (194)
Q Consensus 161 ~~~~a~~~~~~m~~~~ 176 (194)
.++|.+.++......
T Consensus 77 -~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 77 -YEQGVELLLKIIAET 91 (117)
T ss_dssp -HHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhC
Confidence 888888887765443
No 157
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.89 E-value=0.0073 Score=46.56 Aligned_cols=100 Identities=7% Similarity=-0.042 Sum_probs=81.7
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHH
Q 029406 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILK 149 (194)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~ 149 (194)
+...+..+-..+.+.|++++|...|.+..... +-+...|..+-.+|.+.|++++|...++...+. .+-+...|..+-.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL-DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 45667777888999999999999999988753 237889999999999999999999999998765 2345678888888
Q ss_pred hhCCCCchHHhHHHHHhhhcccccccC
Q 029406 150 GLIPYPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 150 ~~~~~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
++...|+ .++|...|......+
T Consensus 81 ~~~~~g~-----~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 81 CQLEMES-----YDEAIANLQRAYSLA 102 (281)
T ss_dssp HHHHTTC-----HHHHHHHHHHHHHHH
T ss_pred HHHHcCC-----HHHHHHHHHHHHHhC
Confidence 9999999 888888877654433
No 158
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.84 E-value=0.0081 Score=42.57 Aligned_cols=131 Identities=10% Similarity=0.015 Sum_probs=93.1
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH-
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA- 115 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~- 115 (194)
.+...-..+...|++++|...|+...+ .-+-+...+..+-..|.+.|++++|+..|++.... .|+...+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHH
Confidence 355566678889999999999998752 12235778888999999999999999999987544 3444433322211
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
+...+....+...|+...+. .+-+...+..+-..+...|+ .++|...++......|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~-~P~~~~~~~~la~~~~~~g~-----~~~A~~~~~~~l~~~p 139 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAA-NPDNFELACELAVQYNQVGR-----DEEALELLWNILKVNL 139 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHTTCT
T ss_pred HHhhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccc-----HHHHHHHHHHHHHhCc
Confidence 12223334567888887654 13357888888899999999 8888888888766655
No 159
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.83 E-value=0.031 Score=44.52 Aligned_cols=132 Identities=8% Similarity=-0.002 Sum_probs=91.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----CCCCCHHhH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD----MFFYRDMLMMLARNKKVVEAKQVWEDLKRE----EVLFDQHTF 109 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p~~~ty 109 (194)
+..+-..|...|++++|.+.|+...+...-.++ ..+++.+=..|...|++++|...|.+.... +.+....++
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 264 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL 264 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHH
Confidence 345566677899999999999887631111122 346777778888999999999999988761 323347789
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhHhC----CCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccc
Q 029406 110 GDIIRAFSDSGLPSEAMFIYNEMRSS----PATPISLPFRVILKGLIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 110 ~~li~~~~~~g~~~~a~~l~~~M~~~----g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~ 171 (194)
..+-..|.+.|++++|...++...+. +-+.....+..+-..+...|+. ...+.|..+++.
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~--~~~~~al~~~~~ 328 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDE--RKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHh
Confidence 99999999999999999999987553 1222234555565666666662 445666666664
No 160
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.004 Score=39.97 Aligned_cols=65 Identities=11% Similarity=0.035 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
+...|..+=..+.+.|++++|...|.+..+.. +.+...|..+-.+|.+.|++++|...|+...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34455666667777778888887777776543 235667777777788888888888888776654
No 161
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=96.80 E-value=0.017 Score=44.63 Aligned_cols=117 Identities=8% Similarity=-0.082 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHH-HHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLM-MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~-~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
..+..+-..+.+.|++++|...|+.... ..|+......... .+.+.+..++|...+.+..... +-+...+..+-.
T Consensus 152 ~a~~~la~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~ 227 (287)
T 3qou_A 152 EIGLLLAETLIALNRSEDAEAVLXTIPL---QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLAL 227 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTSCG---GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHhCch---hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHH
Confidence 3455677788899999999999998862 3455543333333 3566777888888888877653 447889999999
Q ss_pred HHhcCCChHHHHHHHHHhHhCC-CCCChhhHHHHHHhhCCCCc
Q 029406 115 AFSDSGLPSEAMFIYNEMRSSP-ATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~g-~~p~~~ty~~ll~~~~~~g~ 156 (194)
.|...|++++|...|....... -..+...+..+...+...|+
T Consensus 228 ~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 228 QLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 9999999999999999987652 12336788888888888777
No 162
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.77 E-value=0.0071 Score=47.10 Aligned_cols=130 Identities=12% Similarity=-0.019 Sum_probs=93.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhh---cCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----CCCC-CHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKE---IWYRP-DMFFYRDMLMMLARNKKVVEAKQVWEDLKRE----EVLF-DQHT 108 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p-~~~t 108 (194)
+......|...|++++|...|.+...- .+-.+ -..+|+.+-..|.+.|++++|+..|.+.... |-.. -..+
T Consensus 39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 118 (307)
T 2ifu_A 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMA 118 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 445566777889999999999887521 11111 1457888889999999999999999876543 2111 2467
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHhC----CCCC-ChhhHHHHHHhhCCCCchHHhHHHHHhhhccccc
Q 029406 109 FGDIIRAFSDSGLPSEAMFIYNEMRSS----PATP-ISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 109 y~~li~~~~~~g~~~~a~~l~~~M~~~----g~~p-~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
|+.+-..|.. |++++|...|++..+. |-.+ ...+|..+-..|.+.|+ .+.|.+.++...
T Consensus 119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~-----~~~A~~~~~~al 182 (307)
T 2ifu_A 119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQK-----FDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHH
Confidence 8888889988 9999999999986432 2111 14678888889999999 777777776653
No 163
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.72 E-value=0.021 Score=37.17 Aligned_cols=79 Identities=6% Similarity=-0.075 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHh
Q 029406 53 LCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEM 132 (194)
Q Consensus 53 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M 132 (194)
.|+..|+...+ ..+.+...+..+-..|.+.|++++|...|.+..... +.+...|..+-.+|...|++++|...|+..
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45666776652 223357778888888888899999999888887653 235677888888888899999999888876
Q ss_pred Hh
Q 029406 133 RS 134 (194)
Q Consensus 133 ~~ 134 (194)
.+
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 164
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.65 E-value=0.016 Score=41.67 Aligned_cols=101 Identities=7% Similarity=-0.067 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCC---C-----------HHhHHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 71 MFFYRDMLMMLARNKKVVEAKQVWEDLKREE-VLF---D-----------QHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p---~-----------~~ty~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
...+..+=..+.+.|++++|...|.+..... -.| . ...|..+-.+|.+.|++++|...++.....
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3455666677889999999999999988642 122 1 278899999999999999999999998765
Q ss_pred CCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 136 PATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 136 g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
.+.+...|..+-.+|...|+ .+.|.+.|+......|
T Consensus 118 -~p~~~~~~~~lg~~~~~~~~-----~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 118 -DKNNVKALYKLGVANMYFGF-----LEEAKENLYKAASLNP 153 (198)
T ss_dssp -STTCHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHST
T ss_pred -CcccHHHHHHHHHHHHHccc-----HHHHHHHHHHHHHHCC
Confidence 23457788888888999999 8888888887655443
No 165
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.59 E-value=0.052 Score=38.62 Aligned_cols=93 Identities=14% Similarity=-0.020 Sum_probs=72.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC--------H-----HHHHHHHHHHHhCCCHHHHHHHHHHHHhc----
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD--------M-----FFYRDMLMMLARNKKVVEAKQVWEDLKRE---- 100 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~--------~-----~~~~~li~~~~~~g~~~~a~~l~~~m~~~---- 100 (194)
+...=..+.+.|++++|+..|+.-.. +.|+ . ..|+.+=.++.+.|++++|+..+++..+.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~---l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAME---ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH---HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 34455566788999999999998863 2233 2 38888888899999999999999888764
Q ss_pred -CCCCC-HHhH----HHHHHHHhcCCChHHHHHHHHHhH
Q 029406 101 -EVLFD-QHTF----GDIIRAFSDSGLPSEAMFIYNEMR 133 (194)
Q Consensus 101 -g~~p~-~~ty----~~li~~~~~~g~~~~a~~l~~~M~ 133 (194)
.+.|+ ...| ...=.++...|++++|...|+...
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 13564 3567 788889999999999999999864
No 166
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.59 E-value=0.0032 Score=49.93 Aligned_cols=130 Identities=8% Similarity=-0.071 Sum_probs=89.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhCCC--------------------HHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD----MFFYRDMLMMLARNKK--------------------VVEAKQV 93 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~--------------------~~~a~~l 93 (194)
+..+-..+...|++++|...|+...+...-.++ ..++..+-..|...|+ +++|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 334556677789999999988887532111122 4477788888888898 8999888
Q ss_pred HHHHHhc----CCCC-CHHhHHHHHHHHhcCCChHHHHHHHHHhHhC----CCCC-ChhhHHHHHHhhCCCCchHHhHHH
Q 029406 94 WEDLKRE----EVLF-DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS----PATP-ISLPFRVILKGLIPYPEFREKVKD 163 (194)
Q Consensus 94 ~~~m~~~----g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~----g~~p-~~~ty~~ll~~~~~~g~~~~~~~~ 163 (194)
+.+.... +..| ...+|..+-..|...|++++|...|+...+. +..+ ...+|..+...|...|+ .+
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~ 244 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE-----FE 244 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC-----hH
Confidence 8876542 2111 2457888888999999999999999887532 1111 13477888888888888 77
Q ss_pred HHhhhcccc
Q 029406 164 DFLELFPDM 172 (194)
Q Consensus 164 ~a~~~~~~m 172 (194)
.|...++..
T Consensus 245 ~A~~~~~~a 253 (406)
T 3sf4_A 245 TASEYYKKT 253 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766654
No 167
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.57 E-value=0.032 Score=46.87 Aligned_cols=126 Identities=6% Similarity=-0.104 Sum_probs=86.1
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhh--cCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----cC-CCCC-HHh
Q 029406 42 LAEFQRQDQVFLCMKLYDVVRKE--IWYRPD----MFFYRDMLMMLARNKKVVEAKQVWEDLKR-----EE-VLFD-QHT 108 (194)
Q Consensus 42 l~~~~~~~~~~~a~~~~~~m~~~--~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~-----~g-~~p~-~~t 108 (194)
+..+-.+|++++|..+++...+. .-+.|+ ..+++.|-.+|...|++++|..++.+... .| -.|+ ..+
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 34566789999999999887531 222232 56889999999999999999999987763 23 2233 467
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHh---CCCCCChh----hHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 109 FGDIIRAFSDSGLPSEAMFIYNEMRS---SPATPISL----PFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 109 y~~li~~~~~~g~~~~a~~l~~~M~~---~g~~p~~~----ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
|+.|-..|...|++++|..++++..+ .-+-||.. +.+.+-.++...|. .+.|..++..+
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~-----~~~ae~~~~~~ 461 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM-----FRQNEFMYHKM 461 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 99999999999999999999997632 22334433 33333333433333 66666666555
No 168
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.57 E-value=0.016 Score=39.75 Aligned_cols=114 Identities=5% Similarity=-0.072 Sum_probs=77.2
Q ss_pred CCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhc----CCChHH
Q 029406 49 DQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD----SGLPSE 124 (194)
Q Consensus 49 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~ 124 (194)
+++++|++.|+.-- +.| .|+.. |=..|...+.+++|...|.+..+.| +...+..|=..|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa-~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKAC-ELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHH-HTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHH-cCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 46677888888776 455 33333 4444555567788888888887776 66677777777777 688888
Q ss_pred HHHHHHHhHhCCCCCChhhHHHHHHhhCC----CCchHHhHHHHHhhhcccccccCCch
Q 029406 125 AMFIYNEMRSSPATPISLPFRVILKGLIP----YPEFREKVKDDFLELFPDMIVYDPPE 179 (194)
Q Consensus 125 a~~l~~~M~~~g~~p~~~ty~~ll~~~~~----~g~~~~~~~~~a~~~~~~m~~~~~~~ 179 (194)
|..+|+.-.+.|. ...+..|-..|.. .++ .++|.++|+.-...|.++
T Consensus 80 A~~~~~~Aa~~g~---~~a~~~Lg~~y~~G~g~~~d-----~~~A~~~~~~Aa~~g~~~ 130 (138)
T 1klx_A 80 AAQYYSKACGLND---QDGCLILGYKQYAGKGVVKN-----EKQAVKTFEKACRLGSED 130 (138)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCC-----HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHCCCCCCcC-----HHHHHHHHHHHHHCCCHH
Confidence 8888888877763 3455555555544 556 788888887766666554
No 169
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.55 E-value=0.015 Score=50.90 Aligned_cols=133 Identities=10% Similarity=0.043 Sum_probs=91.2
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKE-IWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
.++..+....+.|.++.|..+|+..++. ....+......+.|...+ .++++.|..+|+...+. ++-+...|...+..
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~f 513 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEYINKYLDF 513 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHH
Confidence 3556666666788899999999999843 233444555445554332 35589999999988775 44466677788888
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCC--ChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccC
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATP--ISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p--~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
....|+.+.|..+|+......-.+ ....|...++--.+.|+ .+.+..+.+.+...-
T Consensus 514 e~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~-----~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 514 LIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGS-----LNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCC-----SHHHHHHHHHHHHHS
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhC
Confidence 888899999999999887653212 23577777777777787 555666655554433
No 170
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.54 E-value=0.024 Score=34.69 Aligned_cols=61 Identities=11% Similarity=0.097 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHh
Q 029406 73 FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~ 134 (194)
.+..+-..+.+.|++++|...|.+..... +.+...+..+-.+|.+.|++++|...|+...+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444444555555555555555554432 12344555555555555555555555555443
No 171
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.50 E-value=0.068 Score=35.83 Aligned_cols=98 Identities=7% Similarity=-0.113 Sum_probs=72.9
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----CCC-CCHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD----MFFYRDMLMMLARNKKVVEAKQVWEDLKRE----EVL-FDQH 107 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~-p~~~ 107 (194)
.+..+-..+...|++++|...|+.......-.++ ...+..+-..+...|++++|...+.+.... +.. ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4455667778899999999999987532111122 456777888888999999999999887643 211 1245
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHh
Q 029406 108 TFGDIIRAFSDSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 108 ty~~li~~~~~~g~~~~a~~l~~~M~~ 134 (194)
++..+-..|...|++++|...+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 788888999999999999999987643
No 172
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.50 E-value=0.11 Score=40.83 Aligned_cols=128 Identities=6% Similarity=-0.091 Sum_probs=89.1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHhc----CCC--C-CHHh
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDM----FFYRDMLMMLARNKKVVEAKQVWEDLKRE----EVL--F-DQHT 108 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~--p-~~~t 108 (194)
.+-..+...|+++.|...++.......-.++. .+++.+-..+...|++++|...+.+.... +.. | ...+
T Consensus 58 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 137 (373)
T 1hz4_A 58 VLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFL 137 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHH
Confidence 34455667899999999999876311112222 33566677788899999999999887643 222 3 2456
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHhC--CCCC--ChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 109 FGDIIRAFSDSGLPSEAMFIYNEMRSS--PATP--ISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 109 y~~li~~~~~~g~~~~a~~l~~~M~~~--g~~p--~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
+..+-..|...|++++|...+++.... ...+ ...+|..+...+...|+ .+.|...++..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~l~~a 200 (373)
T 1hz4_A 138 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD-----LDNARSQLNRL 200 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTC-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHH
Confidence 777888899999999999999987542 1111 23567777788888888 77777776654
No 173
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.50 E-value=0.0058 Score=53.29 Aligned_cols=121 Identities=11% Similarity=-0.023 Sum_probs=93.2
Q ss_pred HhcCCHhHHHHHHHHHHh-----h-cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC
Q 029406 46 QRQDQVFLCMKLYDVVRK-----E-IWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS 119 (194)
Q Consensus 46 ~~~~~~~~a~~~~~~m~~-----~-~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 119 (194)
...|++++|++.|+.... . ...+.+...|..+-..|.+.|++++|+..|++..+.. +-+...|..+-.+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 568999999999999860 0 1223456778888889999999999999999988753 23678899999999999
Q ss_pred CChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 120 GLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 120 g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
|++++|...|++..+.. +-+...|..+-..+.+.|+ .++ .+.|+....
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~-----~~~-~~~~~~al~ 528 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGN-----TDE-HKFYQTVWS 528 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTC-----CCT-TCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC-----hHH-HHHHHHHHH
Confidence 99999999999987652 3356778888888888888 545 555554433
No 174
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=96.46 E-value=0.034 Score=42.29 Aligned_cols=99 Identities=7% Similarity=-0.122 Sum_probs=75.5
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC----CC-CCHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD----MFFYRDMLMMLARNKKVVEAKQVWEDLKREE----VL-FDQH 107 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g----~~-p~~~ 107 (194)
.+..+-..+...|++++|...|+.......-.++ ..++..+-..|...|++++|...+.+..... -. ....
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 4556677788899999999999987532111122 5677888889999999999999998876532 11 1245
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 108 TFGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 108 ty~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
++..+-..|.+.|++++|...|+...+.
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 7888999999999999999999987653
No 175
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.43 E-value=0.049 Score=44.96 Aligned_cols=97 Identities=6% Similarity=-0.154 Sum_probs=74.3
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhh--cCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----cC-CCC
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKE--IWYRPD----MFFYRDMLMMLARNKKVVEAKQVWEDLKR-----EE-VLF 104 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~-----~g-~~p 104 (194)
.+...+..+.+.|++++|..+++...+. .-+.|+ ..+++.|..+|...|++++|+.++.+... .| ..|
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 4455677788899999999999988631 112232 45888899999999999999999987763 23 333
Q ss_pred C-HHhHHHHHHHHhcCCChHHHHHHHHHhH
Q 029406 105 D-QHTFGDIIRAFSDSGLPSEAMFIYNEMR 133 (194)
Q Consensus 105 ~-~~ty~~li~~~~~~g~~~~a~~l~~~M~ 133 (194)
+ ..+|+.|-..|...|++++|..++++..
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3 3579999999999999999999988753
No 176
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.42 E-value=0.014 Score=40.57 Aligned_cols=101 Identities=16% Similarity=0.035 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhc-------C----------CCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 73 FYRDMLMMLARNKKVVEAKQVWEDLKRE-------E----------VLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~l~~~m~~~-------g----------~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
.+...=..+.+.|++++|+..|.+.... . -+.+...|..+-.+|.+.|++++|...++.....
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4445556778899999999999887764 0 1223468999999999999999999999998765
Q ss_pred CCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCch
Q 029406 136 PATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPE 179 (194)
Q Consensus 136 g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~ 179 (194)
. +-+...|..+-.+|...|+ .+.|...|+......|..
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~-----~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWK-----LDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHCGGG
T ss_pred C-CcchHHHHHHHHHHHHHhc-----HHHHHHHHHHHHhcCCCC
Confidence 2 4457788888999999999 888888888776666543
No 177
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.017 Score=46.46 Aligned_cols=131 Identities=5% Similarity=-0.054 Sum_probs=93.4
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHH---HHHHHHHHH-HhCCCHHHHHHHHHHHHh----cCCCCC-HH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMF---FYRDMLMML-ARNKKVVEAKQVWEDLKR----EEVLFD-QH 107 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~---~~~~li~~~-~~~g~~~~a~~l~~~m~~----~g~~p~-~~ 107 (194)
.+..+...|.+.|++++|.+.+....+-.+..++.. ....++..+ ...|.+++|..++..... .+..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 356788889999999999999998864333333332 233334333 346889999999887663 333333 56
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHhC--CCC--C-ChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 108 TFGDIIRAFSDSGLPSEAMFIYNEMRSS--PAT--P-ISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 108 ty~~li~~~~~~g~~~~a~~l~~~M~~~--g~~--p-~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
++..+...|...|++++|..+++..... +.. | ...+|..+...|...|+ .+.|..+++..
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~A~~~~~~a 201 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRN-----LAKSKASLTAA 201 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCc-----HHHHHHHHHHH
Confidence 7889999999999999999999987542 221 2 24578888899999999 77777776654
No 178
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.13 E-value=0.2 Score=39.35 Aligned_cols=128 Identities=6% Similarity=-0.116 Sum_probs=86.1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhc---CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC--HHhHH----
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEI---WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFD--QHTFG---- 110 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~--~~ty~---- 110 (194)
.+-..+...|++++|...++...... +......+|..+-..+...|++++|...+.+.....-.++ .....
T Consensus 140 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 219 (373)
T 1hz4_A 140 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 219 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHH
Confidence 34556778899999999999886311 1111245777888889999999999999998875421111 11111
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHhCCCCCC---hhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 111 DIIRAFSDSGLPSEAMFIYNEMRSSPATPI---SLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 111 ~li~~~~~~g~~~~a~~l~~~M~~~g~~p~---~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
.....+...|+++.|..+++......-.+. ...+..+...+...|+ .+.|.+.++..
T Consensus 220 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~l~~a 279 (373)
T 1hz4_A 220 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGE-----FEPAEIVLEEL 279 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTC-----HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCC-----HHHHHHHHHHH
Confidence 233457799999999999998765432111 2246677778888898 66666666544
No 179
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.12 E-value=0.1 Score=31.69 Aligned_cols=79 Identities=6% Similarity=-0.000 Sum_probs=58.7
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
.+..+-..+...|++++|...|+.... . .+.+...+..+-..|.+.|++++|...|.+..+.. +-+...+..+-.++
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALE-L-DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 344555667889999999999999973 2 23367788889999999999999999999987753 22455565555554
Q ss_pred hc
Q 029406 117 SD 118 (194)
Q Consensus 117 ~~ 118 (194)
.+
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 180
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.10 E-value=0.062 Score=34.23 Aligned_cols=61 Identities=11% Similarity=0.093 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHh
Q 029406 71 MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEM 132 (194)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M 132 (194)
...+..+=..|.+.|++++|+..|++..+.. +-+...|..+-.+|.+.|++++|...|+..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4445555555555666666666665555442 113345555555666666666666655554
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.05 E-value=0.043 Score=45.39 Aligned_cols=101 Identities=7% Similarity=0.003 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-CC-------------HHhHHHHHHHHhcCCChHHHHHHHHHhHhCC
Q 029406 71 MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVL-FD-------------QHTFGDIIRAFSDSGLPSEAMFIYNEMRSSP 136 (194)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-p~-------------~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g 136 (194)
...|..+=..|.+.|++++|...|.+..+..-. ++ ...|..+-.+|.+.|++++|...|+...+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 446677778888999999999999988864311 11 5889999999999999999999999987652
Q ss_pred CCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 137 ATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 137 ~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
+-+...|..+-.+|...|+ .+.|...|+......|
T Consensus 348 -p~~~~a~~~~g~a~~~~g~-----~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNE-----FESAKGDFEKVLEVNP 382 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHTTC-
T ss_pred -CccHHHHHHHHHHHHHccC-----HHHHHHHHHHHHHhCC
Confidence 3457888888899999999 8888888887655544
No 182
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.047 Score=34.69 Aligned_cols=84 Identities=13% Similarity=-0.030 Sum_probs=59.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC-------HHhHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFD-------QHTFG 110 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-------~~ty~ 110 (194)
+..+-..+...|++++|...|+...+ . .+.+...|..+=.+|.+.|++++|+..|.+..+. .|+ ...+.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~-~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLIT-A-QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHHHH
Confidence 44555677789999999999999973 2 2336788888889999999999999999998765 344 33444
Q ss_pred HHHHHHhcCCChHHH
Q 029406 111 DIIRAFSDSGLPSEA 125 (194)
Q Consensus 111 ~li~~~~~~g~~~~a 125 (194)
.+-.++...|.++.+
T Consensus 83 ~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 83 RLELAQGAVGSVQIP 97 (111)
T ss_dssp HHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHhHhhh
Confidence 444444444444433
No 183
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=95.93 E-value=0.044 Score=47.95 Aligned_cols=132 Identities=14% Similarity=0.032 Sum_probs=94.1
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhhc--------CCCCC------------HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 029406 39 VSVLAEFQRQDQVFLCMKLYDVVRKEI--------WYRPD------------MFFYRDMLMMLARNKKVVEAKQVWEDLK 98 (194)
Q Consensus 39 ~~ll~~~~~~~~~~~a~~~~~~m~~~~--------~~~p~------------~~~~~~li~~~~~~g~~~~a~~l~~~m~ 98 (194)
...+...-+.|+++.|.++|+...+.. .-.|+ ...|...++...+.|..+.|..+|....
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455666677899999999999997321 00142 3478899999999999999999999998
Q ss_pred hc-C-CCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccC
Q 029406 99 RE-E-VLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 99 ~~-g-~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
+. + ..+......+.+.-.+ .++.+.|..+|+...+. ++-+...|...++-....|+ .+.|..+|+......
T Consensus 462 ~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~-----~~~AR~lferal~~~ 534 (679)
T 4e6h_A 462 RLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNE-----ESQVKSLFESSIDKI 534 (679)
T ss_dssp HTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTC-----HHHHHHHHHHHTTTS
T ss_pred HhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHhc
Confidence 76 3 3344444444444322 35699999999998765 33345556677776777788 899999999876666
Q ss_pred C
Q 029406 177 P 177 (194)
Q Consensus 177 ~ 177 (194)
+
T Consensus 535 ~ 535 (679)
T 4e6h_A 535 S 535 (679)
T ss_dssp S
T ss_pred C
Confidence 5
No 184
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=95.77 E-value=0.038 Score=43.76 Aligned_cols=98 Identities=16% Similarity=-0.025 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHH------------------hHHHHHHHHhcCCChHHHHHHHHHhH
Q 029406 72 FFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQH------------------TFGDIIRAFSDSGLPSEAMFIYNEMR 133 (194)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~------------------ty~~li~~~~~~g~~~~a~~l~~~M~ 133 (194)
..+..+=..+.+.|++++|...|.+.... .|+.. .|..+-.+|.+.|++++|...++...
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555666777899999999999987654 34432 78899999999999999999999987
Q ss_pred hCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 134 SSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 134 ~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
+.. +-+...|..+-.+|...|+ .+.|...|+......|
T Consensus 258 ~~~-p~~~~a~~~lg~a~~~~g~-----~~~A~~~l~~al~l~p 295 (338)
T 2if4_A 258 TEE-EKNPKALFRRGKAKAELGQ-----MDSARDDFRKAQKYAP 295 (338)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTC-----HHHHHHHHHHTTC---
T ss_pred HhC-CCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHCC
Confidence 642 3457888899999999999 8888888887655443
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=95.76 E-value=0.042 Score=44.26 Aligned_cols=99 Identities=10% Similarity=-0.096 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhc---------------CCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCC
Q 029406 73 FYRDMLMMLARNKKVVEAKQVWEDLKRE---------------EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPA 137 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~l~~~m~~~---------------g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~ 137 (194)
.|..+=..|.+.|++++|+..|.+..+. --+-+..+|..+-.+|.+.|++++|...++...+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 3556667888999999999999988761 112255789999999999999999999999987652
Q ss_pred CCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCC
Q 029406 138 TPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDP 177 (194)
Q Consensus 138 ~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~ 177 (194)
+-+...|..+-.+|...|+ .++|.+.|+......|
T Consensus 304 p~~~~a~~~lg~~~~~~g~-----~~eA~~~l~~Al~l~P 338 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKE-----YDQALADLKKAQEIAP 338 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHCT
T ss_pred chhHHHHHHHHHHHHHccC-----HHHHHHHHHHHHHhCC
Confidence 3357788888899999999 8888888887665554
No 186
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.74 E-value=0.1 Score=43.11 Aligned_cols=86 Identities=2% Similarity=-0.043 Sum_probs=66.7
Q ss_pred cCCHhHHHHHHHHHHh--hcCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----cC-CCCCH-HhHHHHHH
Q 029406 48 QDQVFLCMKLYDVVRK--EIWYRPD----MFFYRDMLMMLARNKKVVEAKQVWEDLKR-----EE-VLFDQ-HTFGDIIR 114 (194)
Q Consensus 48 ~~~~~~a~~~~~~m~~--~~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~-----~g-~~p~~-~ty~~li~ 114 (194)
.|++++|..+++...+ ..-+.|+ ..+++.|-.+|...|++++|..++.+... .| -.|++ .+|+.|-.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 5789999999988752 1223333 46889999999999999999999987763 23 33433 57999999
Q ss_pred HHhcCCChHHHHHHHHHhH
Q 029406 115 AFSDSGLPSEAMFIYNEMR 133 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~ 133 (194)
.|...|++++|..+|++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 9999999999999998753
No 187
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=95.64 E-value=0.21 Score=40.45 Aligned_cols=51 Identities=10% Similarity=-0.094 Sum_probs=29.2
Q ss_pred cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 029406 48 QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100 (194)
Q Consensus 48 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 100 (194)
.++++.|.+.++.... ..+.+...+..+-..|.+.|++++|...|.+..+.
T Consensus 226 ~~~~~~a~~~~~~al~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 226 GEEEGEGEKLVEEALE--KAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp ----CHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH--hCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 3566667777766642 12234556666667777777777777776666543
No 188
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=95.51 E-value=0.037 Score=46.15 Aligned_cols=90 Identities=7% Similarity=-0.068 Sum_probs=74.0
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHH
Q 029406 80 MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFRE 159 (194)
Q Consensus 80 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~ 159 (194)
.+.+.|++++|...|.+..+.. +-+..+|..+-.+|.+.|++++|...+++..+.. +-+..+|..+-..|...|+
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~--- 89 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK--- 89 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC---
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC---
Confidence 4557899999999999988763 3368899999999999999999999999987762 3457788888899999999
Q ss_pred hHHHHHhhhcccccccC
Q 029406 160 KVKDDFLELFPDMIVYD 176 (194)
Q Consensus 160 ~~~~~a~~~~~~m~~~~ 176 (194)
.++|.+.++......
T Consensus 90 --~~eA~~~~~~al~~~ 104 (477)
T 1wao_1 90 --FRAALRDYETVVKVK 104 (477)
T ss_dssp --HHHHHHHHHHHHHHS
T ss_pred --HHHHHHHHHHHHHhC
Confidence 888888887765443
No 189
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.43 E-value=0.1 Score=33.22 Aligned_cols=78 Identities=10% Similarity=0.046 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCCCHHhHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE-VLFDQHTFGDIIR 114 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~ty~~li~ 114 (194)
..+..+-..+.+.|++++|+..|+...+ .. +-+...|..+=.+|.+.|++++|...|.+..+.. -.++......+-.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~ 85 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVE-TD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQD 85 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHH
Confidence 3455666778889999999999999973 22 2246688889999999999999999999876542 2234444433333
Q ss_pred H
Q 029406 115 A 115 (194)
Q Consensus 115 ~ 115 (194)
.
T Consensus 86 ~ 86 (100)
T 3ma5_A 86 A 86 (100)
T ss_dssp H
T ss_pred H
Confidence 3
No 190
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=95.31 E-value=0.1 Score=42.37 Aligned_cols=119 Identities=8% Similarity=-0.152 Sum_probs=66.2
Q ss_pred CHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHH--hHHHHHH-HHhcCCChHHHH
Q 029406 50 QVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQH--TFGDIIR-AFSDSGLPSEAM 126 (194)
Q Consensus 50 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~--ty~~li~-~~~~~g~~~~a~ 126 (194)
.++.|...|+...+. -+.+...+..+=..|.+.|++++|...|.+.......|... .+..+-. .+...|+.++|.
T Consensus 315 ~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai 392 (472)
T 4g1t_A 315 LIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAI 392 (472)
T ss_dssp HHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred hHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 356677777766521 12234556677778888888888888888877654333221 1222221 234668888888
Q ss_pred HHHHHhHhCC-----------------------CCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccccc
Q 029406 127 FIYNEMRSSP-----------------------ATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVY 175 (194)
Q Consensus 127 ~l~~~M~~~g-----------------------~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~ 175 (194)
..|.+..+-. -+.+..+|..+-..|...|+ .++|.+.|+.....
T Consensus 393 ~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~-----~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 393 HHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEK-----MQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHH-----CC------------
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhc
Confidence 8777654321 13456788888888887788 78888888766543
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=94.75 E-value=0.15 Score=36.19 Aligned_cols=97 Identities=8% Similarity=-0.103 Sum_probs=71.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCC-C-----CH-----HhHHHHHHHHhcCCChHHHHHHHHHhHhC-----CCC
Q 029406 75 RDMLMMLARNKKVVEAKQVWEDLKREEVL-F-----DQ-----HTFGDIIRAFSDSGLPSEAMFIYNEMRSS-----PAT 138 (194)
Q Consensus 75 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~-p-----~~-----~ty~~li~~~~~~g~~~~a~~l~~~M~~~-----g~~ 138 (194)
...=..+.+.|++++|+..|++..+..=. | +. ..|+.+-.++.+.|++++|...++...+- .+.
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 33445567889999999999988865311 1 23 38999999999999999999999987653 225
Q ss_pred CC-hhhH----HHHHHhhCCCCchHHhHHHHHhhhcccccccC
Q 029406 139 PI-SLPF----RVILKGLIPYPEFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 139 p~-~~ty----~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~ 176 (194)
|+ ...| ...-.++...|+ .++|...|+......
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr-----~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGR-----GAEAMPEFKKVVEMI 132 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCC-----HHHHHHHHHHHHhcC
Confidence 65 4566 666777888899 888888887665443
No 192
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=94.69 E-value=1.5 Score=35.91 Aligned_cols=127 Identities=9% Similarity=0.014 Sum_probs=71.1
Q ss_pred hHHHHHHHHHhcC---CHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHhcCCCCCHHhH
Q 029406 37 DLVSVLAEFQRQD---QVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARN----KKVVEAKQVWEDLKREEVLFDQHTF 109 (194)
Q Consensus 37 ~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~----g~~~~a~~l~~~m~~~g~~p~~~ty 109 (194)
.+..+-..|.+.| ++.+|+..|+.-. ..| .++...+..|=..|... +++++|...|.+.. .| +...+
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa-~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~ 251 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGV-SRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASW 251 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHH-HCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHH
Confidence 3444555555667 7777777777775 333 33444444444455443 57788888887776 44 33344
Q ss_pred HHHHHH-H--hcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhccccc
Q 029406 110 GDIIRA-F--SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 110 ~~li~~-~--~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
..+-.. | ...+++++|..+|+...+.| +...+..|-..|. .|...++..++|.++|+...
T Consensus 252 ~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 252 VSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 444444 2 34678888888888777666 3344444444443 23000111666777666554
No 193
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=94.64 E-value=0.23 Score=38.59 Aligned_cols=104 Identities=8% Similarity=-0.114 Sum_probs=75.1
Q ss_pred HHHHhcCCHhHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC--HHhHHHHHHHHhc
Q 029406 43 AEFQRQDQVFLCMKLYDVVRKEIWYRPD--MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFD--QHTFGDIIRAFSD 118 (194)
Q Consensus 43 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~--~~ty~~li~~~~~ 118 (194)
..+.+.++|++|+..|+... ... .|. ...+..+=.++.+.|++++|+..|++.......|. .......-.++.+
T Consensus 143 ~l~~~~~r~~dA~~~l~~a~-~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~ 220 (282)
T 4f3v_A 143 VVYGAAERWTDVIDQVKSAG-KWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS 220 (282)
T ss_dssp HHHHHTTCHHHHHHHHTTGG-GCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHhh-ccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH
Confidence 36778999999999998553 111 121 22455666678889999999999999875444354 3356677778889
Q ss_pred CCChHHHHHHHHHhHhCCCCCChhhHHHHHHh
Q 029406 119 SGLPSEAMFIYNEMRSSPATPISLPFRVILKG 150 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~ 150 (194)
.|+.++|..+|+++... .|+...+.+|.+-
T Consensus 221 lGr~deA~~~l~~a~a~--~P~~~~~~aL~~~ 250 (282)
T 4f3v_A 221 QGNESAAVALLEWLQTT--HPEPKVAAALKDP 250 (282)
T ss_dssp HTCHHHHHHHHHHHHHH--SCCHHHHHHHHCT
T ss_pred cCCHHHHHHHHHHHHhc--CCcHHHHHHHhCC
Confidence 99999999999999876 4555555555433
No 194
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=94.57 E-value=0.92 Score=37.16 Aligned_cols=130 Identities=8% Similarity=0.074 Sum_probs=82.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHhcCCCCCHHhHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRK-EIWYRPDMFFYRDMLMMLARNK---KVVEAKQVWEDLKREEVLFDQHTFGDII 113 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~~p~~~~~~~li~~~~~~g---~~~~a~~l~~~m~~~g~~p~~~ty~~li 113 (194)
+..+-..|...+.++.+..-...+.+ .....|+ .+..|=..|...| +.++|+..|.+..+.| .++...+..|-
T Consensus 144 ~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg 220 (452)
T 3e4b_A 144 GLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVA 220 (452)
T ss_dssp HHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHH
Confidence 33444445555544444433333321 1122334 6777777888899 8999999999998887 34666656677
Q ss_pred HHHhcC----CChHHHHHHHHHhHhCCCCCChhhHHHHHHh-h--CCCCchHHhHHHHHhhhcccccccCCch
Q 029406 114 RAFSDS----GLPSEAMFIYNEMRSSPATPISLPFRVILKG-L--IPYPEFREKVKDDFLELFPDMIVYDPPE 179 (194)
Q Consensus 114 ~~~~~~----g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~-~--~~~g~~~~~~~~~a~~~~~~m~~~~~~~ 179 (194)
..|... +++++|..+|+... .| +...+..|-.. + ...|+ .++|.++|+.....|.++
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d-----~~~A~~~~~~Aa~~g~~~ 284 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGD-----VEQMMKYLDNGRAADQPR 284 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCC-----HHHHHHHHHHHHHTTCHH
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHCCCHH
Confidence 777665 79999999999987 44 33444444443 2 34667 888888888766555444
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=94.48 E-value=0.15 Score=32.93 Aligned_cols=79 Identities=6% Similarity=-0.023 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhh
Q 029406 89 EAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLEL 168 (194)
Q Consensus 89 ~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~ 168 (194)
+|+..|.+..+.. +-+...|..+-..|...|++++|...|+...... +.+...|..+-..|...|+ .+.|...
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~-----~~~A~~~ 75 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGD-----RAGARQA 75 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-----HHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCC-----HHHHHHH
Confidence 4566777666543 3367889999999999999999999999987652 3456788888889999999 8888888
Q ss_pred cccccc
Q 029406 169 FPDMIV 174 (194)
Q Consensus 169 ~~~m~~ 174 (194)
|+....
T Consensus 76 ~~~al~ 81 (115)
T 2kat_A 76 WESGLA 81 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876544
No 196
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.34 E-value=0.47 Score=29.36 Aligned_cols=55 Identities=9% Similarity=-0.072 Sum_probs=29.4
Q ss_pred HHHhcCCHhHHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 029406 44 EFQRQDQVFLCMKLYDVVRKEIWYRPDMF-FYRDMLMMLARNKKVVEAKQVWEDLKRE 100 (194)
Q Consensus 44 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~l~~~m~~~ 100 (194)
.+.+.|++++|...|+...+ . .+.+.. .|..+=.+|...|++++|...|.+..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~-~-~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQ-T-EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHH-H-CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH-H-CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34455666666666666542 1 112334 4555555555566666666666655544
No 197
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.31 E-value=0.16 Score=31.67 Aligned_cols=57 Identities=16% Similarity=0.132 Sum_probs=47.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCCCHH-hHHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 78 LMMLARNKKVVEAKQVWEDLKREEVLFDQH-TFGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 78 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~-ty~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
-..+.+.|++++|...|.+..+.. +-+.. .|..+-.+|...|++++|...|+...+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345678899999999999988763 23566 8889999999999999999999998765
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=94.29 E-value=0.31 Score=40.88 Aligned_cols=98 Identities=5% Similarity=-0.120 Sum_probs=73.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHh----hcC-CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----cC-CCCC
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRK----EIW-YRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKR-----EE-VLFD 105 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~-~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~-----~g-~~p~ 105 (194)
+..+...|...|++++|..+++.... ..| ..|+ ..+++.|=..|...|++++|..++.+... .| -.|+
T Consensus 354 ~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~ 433 (490)
T 3n71_A 354 LSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPI 433 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 45677788889999999999988742 122 1233 55788899999999999999999987663 23 2233
Q ss_pred -HHhHHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 106 -QHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 106 -~~ty~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
..+.+.+-.++...+.+..|..+|..+++.
T Consensus 434 ~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 434 TKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777888889999999999998753
No 199
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.03 E-value=0.55 Score=30.09 Aligned_cols=67 Identities=6% Similarity=-0.036 Sum_probs=40.4
Q ss_pred hchhhHHHHHHHHHhcCCHhHHHHHHHHHHhhc-----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 029406 33 LLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEI-----WYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99 (194)
Q Consensus 33 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 99 (194)
++..++..+=..+...+++..|..-|+.-.+.. .-.+....+..+-.+|.+.|++++|..++++..+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 345666777777777777777777776654221 1123345556666666666666666666665554
No 200
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.66 E-value=0.91 Score=29.64 Aligned_cols=64 Identities=13% Similarity=0.132 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHh
Q 029406 86 KVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKG 150 (194)
Q Consensus 86 ~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~ 150 (194)
+.=++.+-++.+-...+.|+.....+.+.+|-|.+++..|.++|+..+.+ +.+....|..++.-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHH
Confidence 44445555555555666666666666667766666676666666666544 22333446555543
No 201
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=93.64 E-value=0.25 Score=40.77 Aligned_cols=84 Identities=8% Similarity=-0.108 Sum_probs=62.9
Q ss_pred hCCCHHHHHHHHHHHHhc---CCCCC----HHhHHHHHHHHhcCCChHHHHHHHHHhHh---C--CCC-CC-hhhHHHHH
Q 029406 83 RNKKVVEAKQVWEDLKRE---EVLFD----QHTFGDIIRAFSDSGLPSEAMFIYNEMRS---S--PAT-PI-SLPFRVIL 148 (194)
Q Consensus 83 ~~g~~~~a~~l~~~m~~~---g~~p~----~~ty~~li~~~~~~g~~~~a~~l~~~M~~---~--g~~-p~-~~ty~~ll 148 (194)
..|++++|+.++.+..+. -+-|+ ..+++.|..+|...|++++|..++++..+ + |-. |+ ..+|+.|-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357899999999877642 23333 36899999999999999999999998743 2 321 33 47899999
Q ss_pred HhhCCCCchHHhHHHHHhhhccc
Q 029406 149 KGLIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 149 ~~~~~~g~~~~~~~~~a~~~~~~ 171 (194)
..|...|+ .++|..+++.
T Consensus 390 ~~~~~qg~-----~~eA~~~~~~ 407 (433)
T 3qww_A 390 RLYMGLEN-----KAAGEKALKK 407 (433)
T ss_dssp HHHHHTTC-----HHHHHHHHHH
T ss_pred HHHHhccC-----HHHHHHHHHH
Confidence 99999998 6666665554
No 202
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=93.59 E-value=0.28 Score=40.33 Aligned_cols=90 Identities=11% Similarity=-0.015 Sum_probs=66.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhcC---CCCC----HHhHHHHHHHHhcCCChHHHHHHHHHhHh---CCCC---CC-hh
Q 029406 77 MLMMLARNKKVVEAKQVWEDLKREE---VLFD----QHTFGDIIRAFSDSGLPSEAMFIYNEMRS---SPAT---PI-SL 142 (194)
Q Consensus 77 li~~~~~~g~~~~a~~l~~~m~~~g---~~p~----~~ty~~li~~~~~~g~~~~a~~l~~~M~~---~g~~---p~-~~ 142 (194)
.+.-+.+.|++++|+.++.+..... +.|+ ..+++.|...|...|++++|..++++... .-+. |+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3555667899999999999887532 3332 46899999999999999999999997643 2122 33 47
Q ss_pred hHHHHHHhhCCCCchHHhHHHHHhhhccc
Q 029406 143 PFRVILKGLIPYPEFREKVKDDFLELFPD 171 (194)
Q Consensus 143 ty~~ll~~~~~~g~~~~~~~~~a~~~~~~ 171 (194)
+|+.|-..|...|+ .++|..++++
T Consensus 373 ~l~nLa~~~~~~g~-----~~eA~~~~~~ 396 (429)
T 3qwp_A 373 QVMKVGKLQLHQGM-----FPQAMKNLRL 396 (429)
T ss_dssp HHHHHHHHHHHTTC-----HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-----HHHHHHHHHH
Confidence 88999999999998 5555555443
No 203
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.07 E-value=0.85 Score=36.89 Aligned_cols=67 Identities=3% Similarity=-0.095 Sum_probs=39.9
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----cCCCCCHHh
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR-----EEVLFDQHT 108 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-----~g~~p~~~t 108 (194)
.++..+...|++.++......... --+.+...|..+|.++.+.|+..+|++.|+...+ .|+.|+..+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345555566666666666666542 2334566666667777677776666666665542 366666553
No 204
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=93.03 E-value=0.63 Score=36.49 Aligned_cols=104 Identities=2% Similarity=-0.059 Sum_probs=58.2
Q ss_pred CCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHH--HHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCC-----
Q 029406 49 DQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVV--EAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGL----- 121 (194)
Q Consensus 49 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~--~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~----- 121 (194)
+++.+++.+++.+.+ .-+-|-..|+.---.+.+.|.++ +++++++++.+.... |...|+---..+.+.+.
T Consensus 124 ~~~~~EL~~~~~~l~--~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLS--SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhh
Confidence 566677777777652 22335666666666666666665 666666666665544 56666655555555554
Q ss_pred -hHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCc
Q 029406 122 -PSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 122 -~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~ 156 (194)
++++++.++.+.... +-|...|+.+-..+.+.|.
T Consensus 201 ~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 201 TIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCC
Confidence 566666666555431 2244444444444433333
No 205
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=92.70 E-value=0.96 Score=37.74 Aligned_cols=120 Identities=9% Similarity=0.016 Sum_probs=81.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHH--HHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYR--DMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~--~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
+...+....+.+.++.|..+|+..+ ..+. +...|. +.|...+. ++.+.|..+|+...+.- +-+...+...+.-
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A~-~~~~--~~~v~i~~A~lE~~~~-~d~~~ar~ife~al~~~-~~~~~~~~~yid~ 363 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIELG-NEGV--GPHVFIYCAFIEYYAT-GSRATPYNIFSSGLLKH-PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHT-TSCC--CHHHHHHHHHHHHHHH-CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhh-CCCC--ChHHHHHHHHHHHHHC-CChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 4455666666788999999999883 3332 334443 44554442 36999999999887642 2234456777777
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
..+.|+.+.|..+|+.... ....|...+.--...|+ .+.+..+++.+
T Consensus 364 e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~-----~~~~r~v~~~~ 410 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGS-----MELFRELVDQK 410 (493)
T ss_dssp HHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSC-----HHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCC-----HHHHHHHHHHH
Confidence 7888999999999999732 35667777766566677 66665555443
No 206
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.97 E-value=1.2 Score=36.08 Aligned_cols=73 Identities=16% Similarity=0.108 Sum_probs=58.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHh-----CCCCCChhh---HHHH
Q 029406 76 DMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS-----SPATPISLP---FRVI 147 (194)
Q Consensus 76 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~-----~g~~p~~~t---y~~l 147 (194)
.++..+...|++.+|......+... -+.+...|-.+|.+|.+.|+..+|...|+.... -|+.|...+ |..+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~i 254 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERI 254 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 4667777899999999988888654 356889999999999999999999999998643 499998754 4444
Q ss_pred HH
Q 029406 148 LK 149 (194)
Q Consensus 148 l~ 149 (194)
+.
T Consensus 255 l~ 256 (388)
T 2ff4_A 255 LR 256 (388)
T ss_dssp HT
T ss_pred Hc
Confidence 43
No 207
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.82 E-value=2.2 Score=29.40 Aligned_cols=65 Identities=14% Similarity=0.151 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhh
Q 029406 86 KVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151 (194)
Q Consensus 86 ~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~ 151 (194)
+.=+..+-++.+....+.|+.....+.+.+|-+.+++..|.++|+..+.+ +.+....|..+++-+
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 132 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHH
Confidence 44455556666667778888888888888888888888888888887665 344455677666543
No 208
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=91.62 E-value=5.7 Score=33.72 Aligned_cols=120 Identities=10% Similarity=0.021 Sum_probs=86.6
Q ss_pred HhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCC-ChHHHHH
Q 029406 51 VFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNK--KVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG-LPSEAMF 127 (194)
Q Consensus 51 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g-~~~~a~~ 127 (194)
+++++++++.+.+ ..+-+...|+.--.++.+.+ ++++++.+++++.+.... |...|+---..+.+.| .++++.+
T Consensus 89 ~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~ 165 (567)
T 1dce_A 89 VKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELA 165 (567)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHH
Confidence 8999999999973 22336778888888888888 779999999999988655 8889999888888999 8999999
Q ss_pred HHHHhHhCCCCCChhhHHHHHHhhCCC---------CchHHhHHHHHhhhcccccc
Q 029406 128 IYNEMRSSPATPISLPFRVILKGLIPY---------PEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 128 l~~~M~~~g~~p~~~ty~~ll~~~~~~---------g~~~~~~~~~a~~~~~~m~~ 174 (194)
.+..+.+.. +-|...|+..-..+.+. |...+...+++.+.+.....
T Consensus 166 ~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 166 FTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp HHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh
Confidence 999987763 33556666554443321 10112335666666655443
No 209
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=91.55 E-value=0.62 Score=32.93 Aligned_cols=102 Identities=13% Similarity=-0.044 Sum_probs=71.0
Q ss_pred HhcCCHhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 46 QRQDQVFLCMKLYDVVRKEIWYRP-DMFFYRDMLMMLARNKK----------VVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 46 ~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~----------~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
.+.+.+++|.+.++.-.. ..| +...|+.+=.++...++ +++|+..|++..+.. +-+...|..+=.
T Consensus 13 ~r~~~feeA~~~~~~Ai~---l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYK---SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 355667888888888763 223 45566655556665554 468888888887663 225678888888
Q ss_pred HHhcCC-----------ChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCC
Q 029406 115 AFSDSG-----------LPSEAMFIYNEMRSSPATPISLPFRVILKGLIP 153 (194)
Q Consensus 115 ~~~~~g-----------~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~ 153 (194)
+|...| ++++|...|++..+- .|+...|..-+...-+
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~~k 136 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMTAK 136 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHT
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHh
Confidence 888764 899999999987654 6777777766665543
No 210
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=91.36 E-value=1.1 Score=39.00 Aligned_cols=29 Identities=7% Similarity=-0.023 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 029406 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDL 97 (194)
Q Consensus 69 p~~~~~~~li~~~~~~g~~~~a~~l~~~m 97 (194)
.+...|..+=..+.+.++++.|...|.++
T Consensus 679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 35667777777777777777777777765
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=91.14 E-value=2.8 Score=29.30 Aligned_cols=18 Identities=22% Similarity=0.078 Sum_probs=8.7
Q ss_pred HhCCCHHHHHHHHHHHHh
Q 029406 82 ARNKKVVEAKQVWEDLKR 99 (194)
Q Consensus 82 ~~~g~~~~a~~l~~~m~~ 99 (194)
.+.|++++|.+.++.+.+
T Consensus 82 ~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 82 YRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHTSCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHh
Confidence 444555555555444443
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=90.70 E-value=3.1 Score=36.05 Aligned_cols=81 Identities=7% Similarity=0.015 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+..+-..+.+.++++.|.+.|..+.. |..+...|...|+.+....+-+.....| -|+....+
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~ 745 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNA 745 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHH
Confidence 4456777888889999999999998862 4567777777888777766666555554 35666667
Q ss_pred HhcCCChHHHHHHHHHh
Q 029406 116 FSDSGLPSEAMFIYNEM 132 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M 132 (194)
|.+.|++++|.+++.++
T Consensus 746 ~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 746 YWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHTCHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHc
Confidence 77778888888877765
No 213
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=90.27 E-value=2.4 Score=26.95 Aligned_cols=71 Identities=8% Similarity=-0.016 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC------CCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCCh
Q 029406 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE------VLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPIS 141 (194)
Q Consensus 69 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g------~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~ 141 (194)
.+...+..|=..+.+.|++..|..-|....+.- -.+....|..+-.+|.+.|+++.|...++..... .|+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~ 79 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEH 79 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCC
Confidence 455666777788889999999998888766531 1346778999999999999999999999988653 4543
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=90.07 E-value=3.4 Score=33.34 Aligned_cols=85 Identities=14% Similarity=0.041 Sum_probs=61.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHH
Q 029406 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRV 146 (194)
Q Consensus 67 ~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ 146 (194)
.+.+..+|..+-..+.-.|++++|...+++....+ |+...|..+=..+.-.|+.++|.+.|.....- .|...||..
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~ 348 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYW 348 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHH
Confidence 35567777776666666688999988888888775 78777777777888888998888888765443 566677776
Q ss_pred HHHhhCCCC
Q 029406 147 ILKGLIPYP 155 (194)
Q Consensus 147 ll~~~~~~g 155 (194)
.=+..+...
T Consensus 349 ~~~l~F~sn 357 (372)
T 3ly7_A 349 IENGIFQTS 357 (372)
T ss_dssp HHHSSSCCC
T ss_pred HhCceeecc
Confidence 555555443
No 215
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.37 E-value=6.7 Score=30.92 Aligned_cols=118 Identities=7% Similarity=-0.172 Sum_probs=84.3
Q ss_pred cCCHhHHHHHHHHHHh---hcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC----CCC-CHHhHHHHHHHHhc
Q 029406 48 QDQVFLCMKLYDVVRK---EIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREE----VLF-DQHTFGDIIRAFSD 118 (194)
Q Consensus 48 ~~~~~~a~~~~~~m~~---~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g----~~p-~~~ty~~li~~~~~ 118 (194)
.|+++.|.+++..... ..+..+. ..++..+-..|...|++++|..++.+....- -.| ...+|..+...|..
T Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (434)
T 4b4t_Q 108 PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK 187 (434)
T ss_dssp CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 5889999999887742 2333333 5678889999999999999999999876432 112 24579999999999
Q ss_pred CCChHHHHHHHHHhHhC----CCCCC--hhhHHHHHHhhCCCCchHHhHHHHHhhhcc
Q 029406 119 SGLPSEAMFIYNEMRSS----PATPI--SLPFRVILKGLIPYPEFREKVKDDFLELFP 170 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~----g~~p~--~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~ 170 (194)
.|++++|..+++..... +.+|. ...|..+...+...|+ .+.|...|.
T Consensus 188 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----y~~A~~~~~ 240 (434)
T 4b4t_Q 188 LRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKD-----YKTAFSYFF 240 (434)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSC-----HHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHh-----HHHHHHHHH
Confidence 99999999999886432 22222 3566666677788888 555544443
No 216
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.34 E-value=3.2 Score=27.10 Aligned_cols=63 Identities=13% Similarity=0.061 Sum_probs=48.6
Q ss_pred CHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 50 QVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 50 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
+.-+..+-++.+. ...+.|+.....+.+++|-|.+++.-|.++|+..+... .+...+|..++.
T Consensus 25 D~~e~rrglN~l~-~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLV-GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHT-TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHh-ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 3445566666666 78899999999999999999999999999999887653 223445766654
No 217
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=87.36 E-value=4.1 Score=28.67 Aligned_cols=110 Identities=11% Similarity=0.055 Sum_probs=75.1
Q ss_pred hhhchhhHHHHHHHHHhcCCH------hHHHHHHHHHHhhcCCCCCH-HHHHHHHHHHHh------CCCHHHHHHHHHHH
Q 029406 31 SRLLKSDLVSVLAEFQRQDQV------FLCMKLYDVVRKEIWYRPDM-FFYRDMLMMLAR------NKKVVEAKQVWEDL 97 (194)
Q Consensus 31 ~~~~~~~~~~ll~~~~~~~~~------~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~------~g~~~~a~~l~~~m 97 (194)
++-.+..+...|...-+.|++ +...++|+.-. ..++|+. ..|..-|..+.+ .++.++|.++|+.+
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAi--a~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAI--EALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMA 86 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHH--HHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHH--HcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 334456677777777777888 77888888775 4566642 222333332222 36888899999988
Q ss_pred HhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhh
Q 029406 98 KREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLP 143 (194)
Q Consensus 98 ~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~t 143 (194)
...+-.. ...|...-.-=.+.|++..|..++..-...+..|....
T Consensus 87 ~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 87 RANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 7655445 77888888888889999999999999887665554433
No 218
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=86.88 E-value=9.4 Score=29.68 Aligned_cols=127 Identities=9% Similarity=0.017 Sum_probs=96.9
Q ss_pred HHhcCCHh--HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCC------HHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 45 FQRQDQVF--LCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKK------VVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 45 ~~~~~~~~--~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~------~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
+.+.+.++ +++++++.+.+ . -+-|-..|+.--.++.+.+. ++++++.+.++...... |...|+-+-..+
T Consensus 154 l~~l~~~~~~~EL~~~~~~i~-~-d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll 230 (306)
T 3dra_A 154 VDTFDLHNDAKELSFVDKVID-T-DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIH 230 (306)
T ss_dssp HHHTTCTTCHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred HHHhcccChHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHH
Confidence 34567777 99999999973 2 33578888877777777776 89999999999887654 899999999999
Q ss_pred hcCCChHH-HHHHHHHhHhCC--CCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc-cCCch
Q 029406 117 SDSGLPSE-AMFIYNEMRSSP--ATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV-YDPPE 179 (194)
Q Consensus 117 ~~~g~~~~-a~~l~~~M~~~g--~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~-~~~~~ 179 (194)
.+.|+... +..+.....+.+ -+.+...+..+...|.+.|+ .++|.++++.+.. ++|..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~-----~~~A~~~~~~l~~~~Dpir 292 (306)
T 3dra_A 231 ERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK-----YNESRTVYDLLKSKYNPIR 292 (306)
T ss_dssp HHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHTTCGGG
T ss_pred HhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC-----HHHHHHHHHHHHhccChHH
Confidence 99988544 555666665432 23467888899999999999 8889999888764 66543
No 219
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=86.24 E-value=6.4 Score=28.23 Aligned_cols=78 Identities=14% Similarity=0.186 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFS 117 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~ 117 (194)
+..+=+...++|+++.|...|...++ |..+.-.|.-.|+.+....+-..-...| -||....++.
T Consensus 37 Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~L~kla~iA~~~g------~~n~af~~~l 100 (177)
T 3mkq_B 37 WERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNKLSKMQNIAQTRE------DFGSMLLNTF 100 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHHHHHHHHHHHHCc------cHHHHHHHHH
Confidence 44455555555555555555555541 3444444445555554444433333333 2666677777
Q ss_pred cCCChHHHHHHHHH
Q 029406 118 DSGLPSEAMFIYNE 131 (194)
Q Consensus 118 ~~g~~~~a~~l~~~ 131 (194)
-.|+++++.++|.+
T Consensus 101 ~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 101 YNNSTKERSSIFAE 114 (177)
T ss_dssp HHTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHH
Confidence 77777777777754
No 220
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=85.78 E-value=14 Score=30.61 Aligned_cols=25 Identities=8% Similarity=-0.241 Sum_probs=19.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHH
Q 029406 38 LVSVLAEFQRQDQVFLCMKLYDVVR 62 (194)
Q Consensus 38 ~~~ll~~~~~~~~~~~a~~~~~~m~ 62 (194)
+...+.-+.+.|+++.|..+|+...
T Consensus 216 W~~ya~~~~~~~~~~~ar~i~erAi 240 (493)
T 2uy1_A 216 YFFYSEYLIGIGQKEKAKKVVERGI 240 (493)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445556667899999999998876
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=85.49 E-value=4.9 Score=25.13 Aligned_cols=48 Identities=17% Similarity=0.018 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 87 VVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 87 ~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
.++|..++.+..... +-+......+-..+.+.|++++|...|+.+.+.
T Consensus 25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566666666665543 224455555566666667777777777766554
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=85.30 E-value=13 Score=29.89 Aligned_cols=123 Identities=7% Similarity=-0.017 Sum_probs=79.4
Q ss_pred CCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHH----hCC-CHHHHHHHHHHHHh----cCCCCCHHhHHHHHHHHhc
Q 029406 49 DQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLA----RNK-KVVEAKQVWEDLKR----EEVLFDQHTFGDIIRAFSD 118 (194)
Q Consensus 49 ~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~----~~g-~~~~a~~l~~~m~~----~g~~p~~~ty~~li~~~~~ 118 (194)
.....|..+|++..+ ..|+ ...|..+--+|. ..+ .......+-..+.. ...+.+..+|.++-..+..
T Consensus 213 ~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~ 289 (372)
T 3ly7_A 213 KSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALV 289 (372)
T ss_dssp HHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHh
Confidence 345789999999874 4465 333333222222 111 11222222112211 2346688888888777777
Q ss_pred CCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCchhh
Q 029406 119 SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPEDL 181 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~~ 181 (194)
.|+++.|...++.....+ |+...|..+-..+.-.|+ .++|.+.+......+|.+..
T Consensus 290 ~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~-----~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 290 KGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGM-----NREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHSCSHHH
T ss_pred CCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHhcCCCcCh
Confidence 899999999999998775 787777777777888899 88888888876666665543
No 223
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=84.50 E-value=7 Score=26.02 Aligned_cols=89 Identities=10% Similarity=-0.116 Sum_probs=71.1
Q ss_pred HHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhc
Q 029406 43 AEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLAR----NKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118 (194)
Q Consensus 43 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 118 (194)
..|...+.++.|.+.|+.-- +.| +...++.|=..|.. .+++++|...|.+..+.| +...+..|-..|..
T Consensus 33 ~~y~~g~~~~~A~~~~~~Aa-~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 33 LVSNSQINKQKLFQYLSKAC-ELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYA 105 (138)
T ss_dssp HHTCTTSCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHH-cCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHC
Confidence 33445677888999999887 343 56666666667777 789999999999999887 67788888888888
Q ss_pred ----CCChHHHHHHHHHhHhCCCC
Q 029406 119 ----SGLPSEAMFIYNEMRSSPAT 138 (194)
Q Consensus 119 ----~g~~~~a~~l~~~M~~~g~~ 138 (194)
.++.++|..+|+.-.+.|..
T Consensus 106 G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 106 GKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCH
Confidence 89999999999998887743
No 224
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=83.63 E-value=8.9 Score=26.68 Aligned_cols=92 Identities=11% Similarity=0.017 Sum_probs=73.2
Q ss_pred HHHHHHHh------cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHH
Q 029406 40 SVLAEFQR------QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113 (194)
Q Consensus 40 ~ll~~~~~------~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li 113 (194)
..|+.-++ +|.+.....-|-.+- .+...++..++.....|.-++..++...+.. +.+|+....-.+-
T Consensus 60 ~vLd~IGkiFDis~C~NlKrVi~C~~~~n------~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia 132 (172)
T 1wy6_A 60 QVLDKIGSYFDLDKCQNLKSVVECGVINN------TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIA 132 (172)
T ss_dssp HHHHHHGGGSCGGGCSCTHHHHHHHHHTT------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHH
T ss_pred HHHHHHhhhcCcHhhhcHHHHHHHHHHhc------chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHH
Confidence 45555543 566666666665554 5777889999999999999999999998643 4578888899999
Q ss_pred HHHhcCCChHHHHHHHHHhHhCCCC
Q 029406 114 RAFSDSGLPSEAMFIYNEMRSSPAT 138 (194)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~M~~~g~~ 138 (194)
++|.+.|+..++.+++.+.=++|++
T Consensus 133 ~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 133 NALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcchhhHHHHHHHHHHhhhH
Confidence 9999999999999999999888875
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=83.39 E-value=14 Score=28.77 Aligned_cols=93 Identities=10% Similarity=0.018 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHh-----CCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC-CCh
Q 029406 52 FLCMKLYDVVRKEIWYRPD---MFFYRDMLMMLAR-----NKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS-GLP 122 (194)
Q Consensus 52 ~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~-----~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~-g~~ 122 (194)
..|...++... .+.|+ ...|+.+-..|.+ .|+.++|.+.|++..+-+=.-+..++...-..++.. |+.
T Consensus 180 ~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 44455555554 36676 6689999999999 499999999999988763211367777888888885 999
Q ss_pred HHHHHHHHHhHhCCCC--CChhhHHHH
Q 029406 123 SEAMFIYNEMRSSPAT--PISLPFRVI 147 (194)
Q Consensus 123 ~~a~~l~~~M~~~g~~--p~~~ty~~l 147 (194)
+.+...++......-. |+....+.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 9999999998887554 665544443
No 226
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.05 E-value=9.2 Score=26.34 Aligned_cols=63 Identities=13% Similarity=0.061 Sum_probs=48.1
Q ss_pred CHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 50 QVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 50 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
|.-+..+-++.+. ...+.|+.....+.+++|-|.+++.-|.++|+..+... .+...+|.-++.
T Consensus 68 D~wElrrglN~l~-~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLV-GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHT-TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHh-ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 3334555555666 67899999999999999999999999999999887653 333556766654
No 227
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=82.52 E-value=6.6 Score=29.15 Aligned_cols=52 Identities=8% Similarity=-0.041 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHhhhhchhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 029406 4 ESLMVAKELKRLQSHPVRFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVR 62 (194)
Q Consensus 4 ~a~~vi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 62 (194)
+|+.+|..+++....++.+...++.... ...+-.|.++|.+++|.++++..-
T Consensus 90 SAl~v~~~I~~e~~l~~~l~e~i~~llk-------~qAV~VCiek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 90 SAINVLEMIKTEFTLTEAVVESSRKLVK-------EAAVIICIKNKEFEKASKILKKHM 141 (235)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH-------HHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHH-------HHHHHHHHHhcchHHHHHHHHHHh
Confidence 4566666666665555554444443322 244556778888888888888885
No 228
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=82.38 E-value=22 Score=30.12 Aligned_cols=120 Identities=9% Similarity=-0.048 Sum_probs=82.6
Q ss_pred hcCC-HhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCC----------HHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 029406 47 RQDQ-VFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKK----------VVEAKQVWEDLKREEVLFDQHTFGDIIR 114 (194)
Q Consensus 47 ~~~~-~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~----------~~~a~~l~~~m~~~g~~p~~~ty~~li~ 114 (194)
+.|. -++|++.++.+.. +.|+ ...|+.-=..+.+.|. +++++.+++.+.+..-+ +..+|+.--.
T Consensus 40 ~~~~~~eeal~~~~~~l~---~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w 115 (567)
T 1dce_A 40 QAGELDESVLELTSQILG---ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCW 115 (567)
T ss_dssp HTTCCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHH---HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 4444 4678999999973 4454 4556554444444455 89999999999876533 7888998888
Q ss_pred HHhcCC--ChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCC-chHHhHHHHHhhhcccccccC
Q 029406 115 AFSDSG--LPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYP-EFREKVKDDFLELFPDMIVYD 176 (194)
Q Consensus 115 ~~~~~g--~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g-~~~~~~~~~a~~~~~~m~~~~ 176 (194)
.+.+.+ +++++..+++.+.+.. +-+...|+.--..+.+.| . .+++.+.+..+....
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~-----~~~el~~~~~~I~~~ 174 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVA-----PAEELAFTDSLITRN 174 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCC-----HHHHHHHHHTTTTTT
T ss_pred HHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCC-----hHHHHHHHHHHHHHC
Confidence 888999 6799999999998763 335566665555555556 4 566666666554433
No 229
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.16 E-value=8.3 Score=25.14 Aligned_cols=85 Identities=14% Similarity=-0.013 Sum_probs=59.0
Q ss_pred cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHH--HHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHH
Q 029406 48 QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLM--MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEA 125 (194)
Q Consensus 48 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~--~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a 125 (194)
...-++|..+-+++. ..+ + .-...||+ .+...|++++|+.+.+.+ .-||...|-+|-.+ |.|..+++
T Consensus 20 ~H~HqEA~tIAdwL~-~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~--rlGl~s~l 88 (116)
T 2p58_C 20 NHYHEEANCIAEWLH-LKG---E-EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCEY--RLGLGSAL 88 (116)
T ss_dssp TTCHHHHHHHHHHHH-HTT---C-HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHHH--HHTCHHHH
T ss_pred chHHHHHHHHHHHHH-hCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHHH--hcccHHHH
Confidence 456688888888887 333 3 33334444 455679999998877643 47898888888766 78888888
Q ss_pred HHHHHHhHhCCCCCChhhH
Q 029406 126 MFIYNEMRSSPATPISLPF 144 (194)
Q Consensus 126 ~~l~~~M~~~g~~p~~~ty 144 (194)
...+..+..+| .|....|
T Consensus 89 e~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 89 ESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHHHTTCC-CHHHHHH
T ss_pred HHHHHHHHhCC-CHHHHHH
Confidence 88888887776 3433333
No 230
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=82.15 E-value=17 Score=28.67 Aligned_cols=94 Identities=4% Similarity=-0.093 Sum_probs=66.8
Q ss_pred CHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC---------
Q 029406 50 QVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKK-VVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS--------- 119 (194)
Q Consensus 50 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~--------- 119 (194)
.++.++.+++.+.+ --+-|-..|+.---++...|. ++++++.+.++.+.... |...|+-.-..+.+.
T Consensus 125 ~~~~EL~~~~k~l~--~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~ 201 (331)
T 3dss_A 125 NWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ 201 (331)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC-----
T ss_pred cHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccc
Confidence 48889999999973 234577888877777777887 68999999988887644 777787776666554
Q ss_pred -----CChHHHHHHHHHhHhCCCCCChhhHHHH
Q 029406 120 -----GLPSEAMFIYNEMRSSPATPISLPFRVI 147 (194)
Q Consensus 120 -----g~~~~a~~l~~~M~~~g~~p~~~ty~~l 147 (194)
+.++++++++....... +-|...|+-+
T Consensus 202 ~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~ 233 (331)
T 3dss_A 202 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYH 233 (331)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 45678888888776542 3355666533
No 231
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=81.51 E-value=7.4 Score=36.00 Aligned_cols=109 Identities=7% Similarity=0.044 Sum_probs=79.9
Q ss_pred HHHhcCCHhHHHHHHHHHHhhcCCCC-----------------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 029406 44 EFQRQDQVFLCMKLYDVVRKEIWYRP-----------------------DMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100 (194)
Q Consensus 44 ~~~~~~~~~~a~~~~~~m~~~~~~~p-----------------------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 100 (194)
++...|++++|.+.|..- ..|+.. -..-|..++..+-+.+.++.+.++-....+.
T Consensus 851 ~~L~~ge~~~A~~~F~ka--a~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~ 928 (1139)
T 4fhn_B 851 IYLKSKEAVKAVRCFKTT--SLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 928 (1139)
T ss_dssp HHHHTTCHHHHHHHHHTC--CCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHH--hhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345689999999999765 222211 1245788999999999999999887765543
Q ss_pred CC-C-CC--HHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCc
Q 029406 101 EV-L-FD--QHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 101 g~-~-p~--~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~ 156 (194)
.- . ++ ...|..++.++...|++++|+..+-.+...... .....-|+..+|..|.
T Consensus 929 ~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 929 KETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCC
T ss_pred ccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCC
Confidence 21 1 22 236899999999999999999999888766433 4667778888887776
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=81.21 E-value=10 Score=25.54 Aligned_cols=66 Identities=8% Similarity=-0.113 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHhCCCHHH---HHHHHHHHHhcCCCC--CHHhHHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 69 PDMFFYRDMLMMLARNKKVVE---AKQVWEDLKREEVLF--DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 69 p~~~~~~~li~~~~~~g~~~~---a~~l~~~m~~~g~~p--~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
|+..+-..+=.+++++....+ ++.++....+.+ .| .....=.|--++.+.|++++|...++.+.+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 444444444445555554444 566666655543 12 1222223334556666666666666665443
No 233
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.08 E-value=7.7 Score=25.25 Aligned_cols=85 Identities=12% Similarity=-0.030 Sum_probs=59.0
Q ss_pred cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHH--HHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHH
Q 029406 48 QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLM--MLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEA 125 (194)
Q Consensus 48 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~--~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a 125 (194)
...-++|..+-+++. ..+ + .-...||+ .+...|++++|+.+.+.+ .-||...|-+|-.+ |.|..+++
T Consensus 19 ~H~HqEA~tIAdwL~-~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~--rlGl~s~l 87 (115)
T 2uwj_G 19 QHCHEEALCIAEWLE-RLG---Q-DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCEW--HLGLGAAL 87 (115)
T ss_dssp TTCHHHHHHHHHHHH-HTT---C-HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHHH--HTTCHHHH
T ss_pred chHHHHHHHHHHHHH-hCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHHH--hcccHHHH
Confidence 456688888888887 333 3 33334444 455679999998776533 47898888888665 88999998
Q ss_pred HHHHHHhHhCCCCCChhhH
Q 029406 126 MFIYNEMRSSPATPISLPF 144 (194)
Q Consensus 126 ~~l~~~M~~~g~~p~~~ty 144 (194)
...+..+..+| .|....|
T Consensus 88 e~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 88 DRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHHHHTCS-SHHHHHH
T ss_pred HHHHHHHHhCC-CHHHHHH
Confidence 88888887776 3333333
No 234
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=80.69 E-value=0.88 Score=32.13 Aligned_cols=98 Identities=12% Similarity=0.077 Sum_probs=68.1
Q ss_pred HhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCCh----------HHHHHHHHHhHhCCCCC-ChhhHHHHHHh
Q 029406 82 ARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP----------SEAMFIYNEMRSSPATP-ISLPFRVILKG 150 (194)
Q Consensus 82 ~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~----------~~a~~l~~~M~~~g~~p-~~~ty~~ll~~ 150 (194)
.+.+.+++|...++...+.. +-+...|+.+=.++...+++ ++|...|++..+- .| +..+|..+-.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHH
Confidence 35567899999999887664 33777788777788877664 5999999987654 34 45678888888
Q ss_pred hCCCCch------HHhHHHHHhhhcccccccCCchhhh
Q 029406 151 LIPYPEF------REKVKDDFLELFPDMIVYDPPEDLF 182 (194)
Q Consensus 151 ~~~~g~~------~~~~~~~a~~~~~~m~~~~~~~~~~ 182 (194)
|.+.|.+ .....++|.+.|+......|....+
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 8765410 0012888888888877766655444
No 235
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=80.44 E-value=4.8 Score=28.09 Aligned_cols=88 Identities=9% Similarity=-0.019 Sum_probs=61.9
Q ss_pred CCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHhcCCCC--CHHhHHHHHHHHhcCCChH
Q 029406 49 DQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNK---KVVEAKQVWEDLKREEVLF--DQHTFGDIIRAFSDSGLPS 123 (194)
Q Consensus 49 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~l~~~m~~~g~~p--~~~ty~~li~~~~~~g~~~ 123 (194)
..+..+.+-|..-. ..+. ++..+...+=.++++++ ++++++.+|....+.+ .| +...+=.+--+|.+.|+++
T Consensus 12 ~~l~~~~~~y~~e~-~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 12 EDLLKFEKKFQSEK-AAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHH-HTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHH-ccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHH
Confidence 34556666676665 3333 67777777777888888 6779999999998875 34 2334444455669999999
Q ss_pred HHHHHHHHhHhCCCCCCh
Q 029406 124 EAMFIYNEMRSSPATPIS 141 (194)
Q Consensus 124 ~a~~l~~~M~~~g~~p~~ 141 (194)
+|.+.++...+. .|+-
T Consensus 89 ~A~~y~~~lL~i--eP~n 104 (152)
T 1pc2_A 89 KALKYVRGLLQT--EPQN 104 (152)
T ss_dssp HHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHHHhc--CCCC
Confidence 999999998765 4543
No 236
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=78.67 E-value=23 Score=28.14 Aligned_cols=122 Identities=12% Similarity=0.021 Sum_probs=83.2
Q ss_pred cC-CHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhC-C-CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChH-
Q 029406 48 QD-QVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARN-K-KVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS- 123 (194)
Q Consensus 48 ~~-~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g-~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~- 123 (194)
.+ .+++++.+++.+.. ..+-+...|+.--..+.+. + .+++++.+++++.+..-+ |...|+---..+.+.|.++
T Consensus 101 l~~~l~eEL~~~~~~L~--~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~ 177 (349)
T 3q7a_A 101 LNKSLEDELRLMNEFAV--QNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGR 177 (349)
T ss_dssp TTCCHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccc
Confidence 45 69999999999973 2334677888777777666 6 889999999999876533 7788887776666666666
Q ss_pred -------HHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCc--hHHhHHHHHhhhccccc
Q 029406 124 -------EAMFIYNEMRSSPATPISLPFRVILKGLIPYPE--FREKVKDDFLELFPDMI 173 (194)
Q Consensus 124 -------~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~--~~~~~~~~a~~~~~~m~ 173 (194)
++++.++.+.+.. +-|...|+.--..+.+.|. ......+.+.+...+..
T Consensus 178 ~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI 235 (349)
T 3q7a_A 178 ISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSI 235 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHH
Confidence 8999999988763 3366666666555555543 02233455555554443
No 237
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=78.32 E-value=15 Score=25.95 Aligned_cols=62 Identities=8% Similarity=-0.018 Sum_probs=41.8
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCH-------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDM-------FFYRDMLMMLARNKKVVEAKQVWEDLK 98 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~l~~~m~ 98 (194)
.+..-+..+...+.++.|.-+.+.+..-.+..|+. .++..+=+++...|++.+|...|.+..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 45566777778888888888877765333334442 244555567777888888888888754
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=78.21 E-value=15 Score=25.61 Aligned_cols=87 Identities=9% Similarity=-0.062 Sum_probs=67.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHH
Q 029406 84 NKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKD 163 (194)
Q Consensus 84 ~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~ 163 (194)
.|+...+...+-.+ ..+...++..++.+...|.-++-.+++.....+ -+|++...-.+.++|.+.|+ ..
T Consensus 74 C~NlKrVi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~-----~r 142 (172)
T 1wy6_A 74 CQNLKSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGD-----ER 142 (172)
T ss_dssp CSCTHHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTC-----HH
T ss_pred hhcHHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcc-----hh
Confidence 45555555555443 124456888999999999999999999986443 47888888999999999999 99
Q ss_pred HHhhhcccccccCCchhh
Q 029406 164 DFLELFPDMIVYDPPEDL 181 (194)
Q Consensus 164 ~a~~~~~~m~~~~~~~~~ 181 (194)
++.+++.+.-..|.++-.
T Consensus 143 ~a~eLl~~AC~kG~kEAC 160 (172)
T 1wy6_A 143 DATTLLIEACKKGEKEAC 160 (172)
T ss_dssp HHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHhhhHHHH
Confidence 999999998888887753
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=77.46 E-value=10 Score=33.49 Aligned_cols=126 Identities=12% Similarity=0.028 Sum_probs=76.6
Q ss_pred HHHHHHHhcCC-HhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhc------CCCC-CH----
Q 029406 40 SVLAEFQRQDQ-VFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNK-KVVEAKQVWEDLKRE------EVLF-DQ---- 106 (194)
Q Consensus 40 ~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~l~~~m~~~------g~~p-~~---- 106 (194)
.++..+...++ ++.|..+|+.+.+ ..-.-+.....++|..+.+.+ .--+|.++..+..+. ...+ +.
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~-~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTK-KDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHH-HCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHh-hCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 35555555666 5889999999973 221112333344555444433 233455555443321 1121 11
Q ss_pred ------HhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCC-hhhHHHHHHhhCCCCchHHhHHHHHhhhccccc
Q 029406 107 ------HTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPI-SLPFRVILKGLIPYPEFREKVKDDFLELFPDMI 173 (194)
Q Consensus 107 ------~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~-~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~ 173 (194)
.....=..-|...|+++-|..+-++-... .|+ ..||-.|..+|...|+ ++.|.-.++.+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d-----~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEE-----YEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTC-----HHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhcc-----HHHHHHHHhcCC
Confidence 11222244466679999999998886544 555 7899999999999999 898888887775
No 240
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=76.90 E-value=7.5 Score=24.24 Aligned_cols=70 Identities=4% Similarity=-0.013 Sum_probs=52.1
Q ss_pred CCCHHhHHHHHHHHhcCCC---hHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCc
Q 029406 103 LFDQHTFGDIIRAFSDSGL---PSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPP 178 (194)
Q Consensus 103 ~p~~~ty~~li~~~~~~g~---~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~ 178 (194)
+.|...+..+-.++...++ .++|..+|++..+.. +-+......+-..+.+.|+ .+.|...++.+....|+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~-----y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFR-----FQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhhCCC
Confidence 3466677777777765544 699999999987651 2345666667788889999 99999999988777766
No 241
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=76.15 E-value=27 Score=27.69 Aligned_cols=93 Identities=4% Similarity=0.088 Sum_probs=68.5
Q ss_pred cCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCC-CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcC-C-ChH
Q 029406 48 QDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNK-KVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDS-G-LPS 123 (194)
Q Consensus 48 ~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g-~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~-g-~~~ 123 (194)
....++|+++++.+.. +.|+ ...|+.-=..+...| .+++++.+++.+....-+ +..+|+.--..+.+. + +.+
T Consensus 67 ~e~se~AL~lt~~~L~---~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 67 EEKSERALELTEIIVR---MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp TCCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCH
T ss_pred CCCCHHHHHHHHHHHH---hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChH
Confidence 4555789999999973 4454 556777666666777 599999999999876533 778888887777776 6 889
Q ss_pred HHHHHHHHhHhCCCCCChhhHH
Q 029406 124 EAMFIYNEMRSSPATPISLPFR 145 (194)
Q Consensus 124 ~a~~l~~~M~~~g~~p~~~ty~ 145 (194)
+++.+++.+.+.. +-|...|+
T Consensus 143 ~EL~~~~k~L~~d-pkNy~AW~ 163 (349)
T 3q7a_A 143 SEIEYIHGSLLPD-PKNYHTWA 163 (349)
T ss_dssp HHHHHHHHHTSSC-TTCHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHH
Confidence 9999999997652 22444444
No 242
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=75.27 E-value=13 Score=28.60 Aligned_cols=71 Identities=10% Similarity=0.018 Sum_probs=47.7
Q ss_pred HHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCCCHHhHHHHHHH
Q 029406 43 AEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE--VLFDQHTFGDIIRA 115 (194)
Q Consensus 43 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p~~~ty~~li~~ 115 (194)
..+.+.|++++|++....-. +..+-|...=..++..+|-.|++++|..-++...+.. ..|-..+|-.+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~V--R~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAI--KASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHH--HTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHH--HhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH
Confidence 44567788888877666554 2345577777788888888888888877666665432 44555566666655
No 243
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=73.99 E-value=21 Score=25.44 Aligned_cols=75 Identities=7% Similarity=0.054 Sum_probs=54.1
Q ss_pred HhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHH
Q 029406 46 QRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEA 125 (194)
Q Consensus 46 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a 125 (194)
.+.|+++.|.++-+.+ -+...|..|=....+.|+++-|...|.+... |..+.-.|.-.|+.+..
T Consensus 16 L~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 4678899998887776 3678899999999999999999988886632 55666666667777665
Q ss_pred HHHHHHhHhCC
Q 029406 126 MFIYNEMRSSP 136 (194)
Q Consensus 126 ~~l~~~M~~~g 136 (194)
..+-+.-..+|
T Consensus 80 ~kla~iA~~~g 90 (177)
T 3mkq_B 80 SKMQNIAQTRE 90 (177)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHCc
Confidence 54444433343
No 244
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=73.77 E-value=25 Score=28.86 Aligned_cols=112 Identities=13% Similarity=0.138 Sum_probs=69.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-------CCCH------------------HhHHHHHHHH---hc
Q 029406 67 YRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEV-------LFDQ------------------HTFGDIIRAF---SD 118 (194)
Q Consensus 67 ~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-------~p~~------------------~ty~~li~~~---~~ 118 (194)
+..+......+... -.|+..+++.+++.+..... ..+. ..+-.+|+++ .+
T Consensus 190 ~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~~~~~dk~gd~~yd~isal~ksir 267 (447)
T 3pvs_A 190 IVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVR 267 (447)
T ss_dssp EECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCCCCC---CCHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHh
Confidence 34455555555555 35667777666666553221 0111 1122344444 34
Q ss_pred CCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCchh
Q 029406 119 SGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPED 180 (194)
Q Consensus 119 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~ 180 (194)
..+.+.|..++..|.+.|..|....=..++.+...-|.-.......|...++-...-|.|+.
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~pe~ 329 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEG 329 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCCcHH
Confidence 58999999999999999999988877777777776665444445556666666666777765
No 245
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.44 E-value=35 Score=27.66 Aligned_cols=98 Identities=8% Similarity=-0.065 Sum_probs=71.3
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh---cCCCCCHH---
Q 029406 35 KSDLVSVLAEFQRQDQVFLCMKLYDVVRK-EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKR---EEVLFDQH--- 107 (194)
Q Consensus 35 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~g~~p~~~--- 107 (194)
......+-+.|.+.|+++.|.+.|..++. ..+..--...+-.+|+.+...+++..+.....+... .+-.|+..
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 34566888999999999999999999983 223333467888899999999999999999988764 23233332
Q ss_pred -hHHHHHHHHhcCCChHHHHHHHHHhHh
Q 029406 108 -TFGDIIRAFSDSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 108 -ty~~li~~~~~~g~~~~a~~l~~~M~~ 134 (194)
.|..++ +...+++..|-..|-+...
T Consensus 211 k~~~gl~--~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 211 KTYYGIH--CLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHG--GGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHhChHHHHHHHHHHHhc
Confidence 233333 3456899999888877644
No 246
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=68.95 E-value=40 Score=26.47 Aligned_cols=96 Identities=6% Similarity=-0.010 Sum_probs=72.9
Q ss_pred HhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCC-hHHHHH
Q 029406 51 VFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNK--KVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGL-PSEAMF 127 (194)
Q Consensus 51 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~-~~~a~~ 127 (194)
+.+++.+++.+.. ..+-+...|+.--.++.+.+ .+++++.+++++.+..-. |...|+---..+...|. +++++.
T Consensus 90 l~~EL~~~~~~L~--~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 90 VKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHH
Confidence 6788999999873 23346778888777777777 489999999999987644 88889888888888888 589999
Q ss_pred HHHHhHhCCCCCChhhHHHHHHh
Q 029406 128 IYNEMRSSPATPISLPFRVILKG 150 (194)
Q Consensus 128 l~~~M~~~g~~p~~~ty~~ll~~ 150 (194)
.+..+.+.. +-|...|+..-..
T Consensus 167 ~~~~~I~~~-p~N~SAW~~R~~l 188 (331)
T 3dss_A 167 FTDSLITRN-FSNYSSWHYRSCL 188 (331)
T ss_dssp HHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHC-CCCHHHHHHHHHH
Confidence 999998764 3355555544333
No 247
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=67.59 E-value=27 Score=24.11 Aligned_cols=70 Identities=9% Similarity=0.099 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHhcCCCCCHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKK--VVEAKQVWEDLKREEVLFDQH 107 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~l~~~m~~~g~~p~~~ 107 (194)
.-+..+|..|...++.++|...++++. .. .-....++..+..++-+.+. -+.+..++..+...|+-+...
T Consensus 10 kki~~lL~EY~~~~D~~EA~~cl~EL~-~p-~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 10 KEIDMLLKEYLLSGDISEAEHCLKELE-VP-HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHT-CG-GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhC-CC-cchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 445678999999999999999999996 21 11234455556666665433 456778888888777654443
No 248
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=63.55 E-value=30 Score=23.07 Aligned_cols=70 Identities=9% Similarity=0.145 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHhcCCCCCHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKK--VVEAKQVWEDLKREEVLFDQH 107 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~l~~~m~~~g~~p~~~ 107 (194)
.-+..+|..|...|+.++|...++++. ...+ ........+..++-+.+. .+.+..++..+...|+-+...
T Consensus 8 kki~~ll~EY~~~~D~~Ea~~cl~eL~-~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 8 KEIDMLLKEYLLSGDISEAEHCLKELE-VPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHT-CGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhC-CCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 345678999999999999999999985 2211 234445556666666542 456778888888777554443
No 249
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=62.72 E-value=21 Score=30.41 Aligned_cols=54 Identities=17% Similarity=0.093 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHH
Q 029406 70 DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEA 125 (194)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a 125 (194)
+...---+|..|.+.|..+.|..|+..+-..-+. +...| ..+..|+|+|+++.+
T Consensus 515 Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 515 TNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp SHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 3556777899999999999999999888665444 44455 777888999888764
No 250
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=61.36 E-value=23 Score=23.06 Aligned_cols=84 Identities=14% Similarity=0.022 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHH
Q 029406 84 NKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKD 163 (194)
Q Consensus 84 ~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~ 163 (194)
....++|.-|-+.+...+. ...+--.-+..+...|++.+|..+.+.+ +.||...|-+|-.. +.|. ..
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~--rlGl-----~s 86 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCEY--RLGL-----GS 86 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHHH--HHTC-----HH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHHH--hccc-----HH
Confidence 4567889888888877765 2222223345677889999999887765 58999999988543 4555 55
Q ss_pred HHhhhcccccccCCchh
Q 029406 164 DFLELFPDMIVYDPPED 180 (194)
Q Consensus 164 ~a~~~~~~m~~~~~~~~ 180 (194)
.+...+..+...|-|..
T Consensus 87 ~le~rL~~la~sg~p~~ 103 (116)
T 2p58_C 87 ALESRLNRLARSQDPRI 103 (116)
T ss_dssp HHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHhCCCHHH
Confidence 66666655555555543
No 251
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=61.29 E-value=5.8 Score=27.69 Aligned_cols=50 Identities=8% Similarity=0.197 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHhcCCC-CCHHhHHHHHHHHhc---CCChHHHHHHHHHhHhCCCC
Q 029406 86 KVVEAKQVWEDLKREEVL-FDQHTFGDIIRAFSD---SGLPSEAMFIYNEMRSSPAT 138 (194)
Q Consensus 86 ~~~~a~~l~~~m~~~g~~-p~~~ty~~li~~~~~---~g~~~~a~~l~~~M~~~g~~ 138 (194)
.+++|.+.+..|++.-+. -....||..|..+-. .++. ..+|..++.+++.
T Consensus 73 ~y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~LK~~l~~~~l---~~FW~~Iv~~~lg 126 (152)
T 1rw2_A 73 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGIT 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHSCC---HHHHHHHHHHTCS
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCcc
Confidence 456666666666654432 144456666665532 2232 3344455555544
No 252
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=59.72 E-value=99 Score=27.80 Aligned_cols=86 Identities=7% Similarity=-0.010 Sum_probs=56.1
Q ss_pred HHHHHHhcCC---HhHHHHHHHHHHhhc---CCCCCHHH--HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHH
Q 029406 41 VLAEFQRQDQ---VFLCMKLYDVVRKEI---WYRPDMFF--YRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDI 112 (194)
Q Consensus 41 ll~~~~~~~~---~~~a~~~~~~m~~~~---~~~p~~~~--~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~l 112 (194)
++...|+.|. +..|.+.|+...... .++||... |+.-+ |.-++=..+++..... .+..--+.+
T Consensus 686 ~~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~~lr~~vy~~~~------g~~~~~~~l~~~y~~~---~~~~ek~~l 756 (897)
T 2xdt_A 686 LLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGA------QSTEGWDFLYSKYQFS---LSSTEKSQI 756 (897)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHHHT------TSHHHHHHHHHHHTTC---CCHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCCCcCCCCcchhhhEEEEec------CCHHHHHHHHHHHHcc---CCHHHHHHH
Confidence 4555566554 567888888876332 35666542 33322 6655555566666543 255556789
Q ss_pred HHHHhcCCChHHHHHHHHHhHhC
Q 029406 113 IRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 113 i~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
+.+++...+.....++++.....
T Consensus 757 l~aL~c~~~~~~l~~~L~~~~~~ 779 (897)
T 2xdt_A 757 EFALCRTQNKEKLQWLLDESFKG 779 (897)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHC
T ss_pred HHHhccCCCHHHHHHHHHHHhCC
Confidence 99999999999988888887754
No 253
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=58.92 E-value=29 Score=21.86 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChH
Q 029406 86 KVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123 (194)
Q Consensus 86 ~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 123 (194)
..++|.++++.+...| ...|..++.++...|...
T Consensus 52 ~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 52 RRDQARQLIIDLETRG----SQALPLFISCLEDTGQDM 85 (97)
T ss_dssp HHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHH
T ss_pred hHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHH
Confidence 3455555555554443 124555555554444433
No 254
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=58.22 E-value=31 Score=25.69 Aligned_cols=126 Identities=6% Similarity=0.037 Sum_probs=74.9
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhc-CCCC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHH
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEI-WYRP----DMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGD 111 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~p----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~ 111 (194)
+...-|+.+....++++|.++.+..++.. ++++ ....-...|..=.....-.-+..+.+.+.. .++...-..
T Consensus 20 ~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~ 96 (235)
T 2d2s_A 20 EGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKS 96 (235)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHH
T ss_pred cccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHH
Confidence 45577999999999999999999886322 2222 111222233333333333444445555522 556777888
Q ss_pred HHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 112 IIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 112 li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
.+..+.+.|..++|.++|=+.+.. .....++.+.-.|+...=+.+.+.-+|..+
T Consensus 97 ~v~~L~rLg~~~~A~~lfL~~rs~-------~i~~~~r~l~~~gd~~~Yi~~Ls~i~Fs~I 150 (235)
T 2d2s_A 97 GTENMIKLGLPEQALDLFLQNRSN-------FIQDLILQIGSVDNPTNYLTQLAVIRFQTI 150 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-------HHHHHHHCC--CCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCChhHHHHHHHHHHHH-------HHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 889999999999999988877644 333344555555653222334444445544
No 255
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=57.14 E-value=45 Score=22.99 Aligned_cols=68 Identities=12% Similarity=0.145 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCC--hHHHHHHHHHhHhCCCCCCh
Q 029406 73 FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGL--PSEAMFIYNEMRSSPATPIS 141 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~--~~~a~~l~~~M~~~g~~p~~ 141 (194)
..+.+|.=|...|+.++|.+.++++....+. ...++..+..++=+.+. .+.+..++..+...|+-+..
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 4578899999999999999999998643333 45566677777766432 45677788888877755443
No 256
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=56.94 E-value=32 Score=23.92 Aligned_cols=71 Identities=6% Similarity=0.083 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCCCHHhHHHHHHHHhcCCChH
Q 029406 52 FLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE--EVLFDQHTFGDIIRAFSDSGLPS 123 (194)
Q Consensus 52 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g~~p~~~ty~~li~~~~~~g~~~ 123 (194)
+.+.+-+....++.|++++.. =-.++..+...+..-.|.+|++.+.+. +-..+..|.--.++.+...|-+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 334444444433566666432 344555555555566666777766665 54455555555555666666543
No 257
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=56.45 E-value=22 Score=23.10 Aligned_cols=84 Identities=15% Similarity=0.002 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHH
Q 029406 84 NKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKD 163 (194)
Q Consensus 84 ~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~ 163 (194)
....++|.-|-+.+...+. ...+--.-+..+...|++.+|..+.+.+ +.||...|-+|-.. +.|. ..
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~--rlGl-----~s 85 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCEW--HLGL-----GA 85 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHHH--HTTC-----HH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHHH--hccc-----HH
Confidence 4457888888888877764 2222223345667889999998876654 58999999988543 5566 66
Q ss_pred HHhhhcccccccCCchh
Q 029406 164 DFLELFPDMIVYDPPED 180 (194)
Q Consensus 164 ~a~~~~~~m~~~~~~~~ 180 (194)
.+...+..+...|-|..
T Consensus 86 ~le~rL~~la~sg~p~~ 102 (115)
T 2uwj_G 86 ALDRRLAGLGGSSDPAL 102 (115)
T ss_dssp HHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHHhCCCHHH
Confidence 66666655555555543
No 258
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=55.78 E-value=70 Score=24.86 Aligned_cols=72 Identities=4% Similarity=-0.089 Sum_probs=56.2
Q ss_pred HHHHHHHHHh-----cCCHhHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHhC-CCHHHHHHHHHHHHhcCCC--CCHH
Q 029406 38 LVSVLAEFQR-----QDQVFLCMKLYDVVRKEIWYRP--DMFFYRDMLMMLARN-KKVVEAKQVWEDLKREEVL--FDQH 107 (194)
Q Consensus 38 ~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~-g~~~~a~~l~~~m~~~g~~--p~~~ 107 (194)
+..+-..|.+ .|+.+.|.+.|+.-.. +.| +..++...-..+++. |+.+++.+.+++....... |+..
T Consensus 202 ~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 202 WNVLTKFYAAAPESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp HHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCH
T ss_pred HHHHHHHHHhCCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChh
Confidence 4455566667 5999999999999984 556 377778888888885 9999999999999988755 7765
Q ss_pred hHHHH
Q 029406 108 TFGDI 112 (194)
Q Consensus 108 ty~~l 112 (194)
..|.+
T Consensus 279 lan~~ 283 (301)
T 3u64_A 279 LLVIL 283 (301)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 259
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=55.56 E-value=13 Score=26.68 Aligned_cols=13 Identities=0% Similarity=0.066 Sum_probs=5.4
Q ss_pred HhCCCHHHHHHHH
Q 029406 82 ARNKKVVEAKQVW 94 (194)
Q Consensus 82 ~~~g~~~~a~~l~ 94 (194)
+..|+.+-+..++
T Consensus 87 ~~~~~~~~~~~Ll 99 (241)
T 1k1a_A 87 CEHRSPTCLRALL 99 (241)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 3444444433333
No 260
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=55.32 E-value=22 Score=23.59 Aligned_cols=47 Identities=15% Similarity=0.041 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCH
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKV 87 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 87 (194)
.+|..+...+..-.|.++++.++ ..+...+..|..-.|+.+...|.+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~-~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELR-RRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHH-HTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHH-HhCCCCCHhhHHHHHHHHHHCCCE
Confidence 45666666666778888888887 566667788888888888887764
No 261
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=55.05 E-value=19 Score=24.35 Aligned_cols=48 Identities=19% Similarity=0.090 Sum_probs=35.8
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHH
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVV 88 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 88 (194)
.+|..+...+..-.|.++++.++ ..+...+..|..--|+.+...|.+.
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~-~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLK-HKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 56666666666777888888887 5666778888888888888877643
No 262
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=54.91 E-value=50 Score=22.88 Aligned_cols=51 Identities=14% Similarity=0.048 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCCCC-CHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCC
Q 029406 90 AKQVWEDLKREEVLF-DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPI 140 (194)
Q Consensus 90 a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~ 140 (194)
+..+|..|...|+-- -+.-|...-..+-..|++.+|..+|+.-.+++-.|-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 667777777666432 445566666666677777777777777666665553
No 263
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=54.23 E-value=1.2e+02 Score=27.21 Aligned_cols=91 Identities=9% Similarity=-0.026 Sum_probs=60.5
Q ss_pred HHHHHHHhcCC---HhHHHHHHHHHHhh---cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHH
Q 029406 40 SVLAEFQRQDQ---VFLCMKLYDVVRKE---IWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDII 113 (194)
Q Consensus 40 ~ll~~~~~~~~---~~~a~~~~~~m~~~---~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li 113 (194)
.++...|+.|. ++.|.+.|+..... ..+.||.... +...-.+.|..++-..+++...... +..--..++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~--vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll 765 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRST--IYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKLR 765 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHH--HHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHH--HHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHHH
Confidence 35666666664 46788888887632 2367775432 2233345677777677777776654 444557789
Q ss_pred HHHhcCCChHHHHHHHHHhHhC
Q 029406 114 RAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
.+++...+.....++++.....
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l~~ 787 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTLNP 787 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTTCT
T ss_pred HHhCCCCCHHHHHHHHHHHhCC
Confidence 9999899998888888877654
No 264
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=53.87 E-value=40 Score=22.55 Aligned_cols=84 Identities=8% Similarity=0.102 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHH---HHHHHHHhHhCCCCC-Ch-hhHHHHHHhhCCCCchHHhH
Q 029406 87 VVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSE---AMFIYNEMRSSPATP-IS-LPFRVILKGLIPYPEFREKV 161 (194)
Q Consensus 87 ~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~---a~~l~~~M~~~g~~p-~~-~ty~~ll~~~~~~g~~~~~~ 161 (194)
...+.+-|......|. |+..+--.+-.++++.+.... ++.++++....+ .| +. ...-.|.-++.+.|+
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~----- 89 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKE----- 89 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhh-----
Confidence 4444555554444454 677777778888999987766 889999887664 23 22 222334456779999
Q ss_pred HHHHhhhcccccccCC
Q 029406 162 KDDFLELFPDMIVYDP 177 (194)
Q Consensus 162 ~~~a~~~~~~m~~~~~ 177 (194)
.+.|.+.++.+....|
T Consensus 90 Y~~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 90 YEKALKYVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCC
Confidence 8888888776655444
No 265
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=52.96 E-value=8.5 Score=25.63 Aligned_cols=30 Identities=10% Similarity=0.378 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhcCCC-CCHHhHHHHHHHH
Q 029406 87 VVEAKQVWEDLKREEVL-FDQHTFGDIIRAF 116 (194)
Q Consensus 87 ~~~a~~l~~~m~~~g~~-p~~~ty~~li~~~ 116 (194)
+++|.+.+..|++.-+. -....||..|..+
T Consensus 43 y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~L 73 (120)
T 1q2z_A 43 FMKSIDCIRAFREEAIKFSEEQRFNNFLKAL 73 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 44555555555443322 1344555555444
No 266
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=52.22 E-value=14 Score=27.30 Aligned_cols=32 Identities=6% Similarity=-0.215 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 84 NKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 84 ~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
..+.+.|+..+-+|.+.|-.|....=-.++.+
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi~A 79 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLISA 79 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 35566666666666666655554444444433
No 267
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=52.18 E-value=12 Score=27.25 Aligned_cols=32 Identities=16% Similarity=0.390 Sum_probs=14.1
Q ss_pred CChHHHHHHHHHhHhCCCCCChhhHHHHHHhh
Q 029406 120 GLPSEAMFIYNEMRSSPATPISLPFRVILKGL 151 (194)
Q Consensus 120 g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~ 151 (194)
.+.+.|+-++..|.+.|..|....=..++-+.
T Consensus 21 SDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44444444444444444444444444443333
No 268
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=51.81 E-value=49 Score=21.85 Aligned_cols=42 Identities=7% Similarity=-0.170 Sum_probs=22.4
Q ss_pred HHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHh
Q 029406 93 VWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 93 l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~ 134 (194)
+|+.+....+.|++..--.-|..+...++++.|..++-.+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444444555544444444455555666666666665544
No 269
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=50.58 E-value=27 Score=23.84 Aligned_cols=45 Identities=11% Similarity=0.074 Sum_probs=20.1
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCC
Q 029406 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKK 86 (194)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 86 (194)
+|..+...+..-.|.++++.++ ..+...+..|..-.|+.+...|.
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~-~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIR-QKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHH-HHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHH-HhCCCCCHhhHHHHHHHHHHCCc
Confidence 3333434444444555555554 33334444444444444444443
No 270
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=50.45 E-value=45 Score=23.08 Aligned_cols=66 Identities=15% Similarity=0.185 Sum_probs=48.2
Q ss_pred hHHHHHHHHhhhhchhhHHHHHHHHHhcCCHhHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHhCCCHH
Q 029406 21 RFDRFIKSHVSRLLKSDLVSVLAEFQRQDQVFLCMKLYDVVRKEI--WYRPDMFFYRDMLMMLARNKKVV 88 (194)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~p~~~~~~~li~~~~~~g~~~ 88 (194)
.+...+++...+..+ .=..+|..+...+..-.|.++++.++ .. +...+..|..--|+.+...|...
T Consensus 19 ~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~-~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 19 RFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIK-QAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHH-HHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHH-hhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 344445555444332 22467788888888889999999998 55 77788999999999999988653
No 271
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=50.10 E-value=1.1e+02 Score=26.98 Aligned_cols=51 Identities=6% Similarity=0.053 Sum_probs=35.9
Q ss_pred HHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 029406 45 FQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLK 98 (194)
Q Consensus 45 ~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~ 98 (194)
|...|+++.|+++-+.-.+ +.|+ =.+|..|-..|.+.|+++.|+-.++.+.
T Consensus 347 Ll~K~~~elAL~~Ak~AV~---~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE---LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHh---cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4456778888777777652 4454 5678888888888888888877776663
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=49.06 E-value=74 Score=23.16 Aligned_cols=67 Identities=6% Similarity=0.080 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC-CHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCC
Q 029406 73 FYRDMLMMLARNKKVVEAKQVWEDLKREEVLF-DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPI 140 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~ 140 (194)
.|-..++.| ..+...++..+|..|...|+-- -+.-|...-..+-..|++.+|..+|+.-.+++-.|-
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 333344433 2444667788888887776442 445677777777777888888888887777766664
No 273
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=48.69 E-value=80 Score=23.39 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhcCCCC-CHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCC
Q 029406 88 VEAKQVWEDLKREEVLF-DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPI 140 (194)
Q Consensus 88 ~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~ 140 (194)
+++..+|..|...|+-- -+.-|...-..|-..|++.+|..+|+.-.+++-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 35667777777776442 445577777777777888888888877766665653
No 274
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=48.48 E-value=13 Score=27.12 Aligned_cols=36 Identities=14% Similarity=0.079 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCC
Q 029406 84 NKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120 (194)
Q Consensus 84 ~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g 120 (194)
..+.+.|+..+-+|.+.| .|....=-.++.+.=.-|
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 456666666666666666 544444344444433333
No 275
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=48.44 E-value=30 Score=23.43 Aligned_cols=59 Identities=20% Similarity=0.175 Sum_probs=30.4
Q ss_pred hcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChH
Q 029406 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123 (194)
Q Consensus 64 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 123 (194)
..|++++..= -.++..+...+..-.|.+|++.+.+.+-..+..|.--.+..+...|-+.
T Consensus 15 ~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 15 ETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 4555544332 2233333344444556666666655554455555555566666666554
No 276
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=47.92 E-value=70 Score=22.53 Aligned_cols=105 Identities=8% Similarity=-0.036 Sum_probs=63.8
Q ss_pred hcCCCCCHHHHH--HHHHHHHhCCCHHHHHHHHHHHHhc-CCCCCH-------HhHHHHHHHHhcCCChHHHHHHHHHhH
Q 029406 64 EIWYRPDMFFYR--DMLMMLARNKKVVEAKQVWEDLKRE-EVLFDQ-------HTFGDIIRAFSDSGLPSEAMFIYNEMR 133 (194)
Q Consensus 64 ~~~~~p~~~~~~--~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~~-------~ty~~li~~~~~~g~~~~a~~l~~~M~ 133 (194)
..|+.|....|+ .=+..+...|.++.|.-+-+.+... +..|+. .++..+-.++...|.+.+|...|++..
T Consensus 11 ~~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 11 SSGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp ----------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 356666554443 3467778899999999888876543 234442 467777889999999999999999842
Q ss_pred h-CCCC---CC---------------------hhhHHHHHHhhCCCCchHHhHHHHHhhhcccccc
Q 029406 134 S-SPAT---PI---------------------SLPFRVILKGLIPYPEFREKVKDDFLELFPDMIV 174 (194)
Q Consensus 134 ~-~g~~---p~---------------------~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~ 174 (194)
. ...- ++ ..=|. +-.+|.+.|+ .++|..+++.+..
T Consensus 91 q~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkyk-ia~C~~~l~~-----~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 91 QQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYK-LAECYTVLKQ-----DKDAIAILDGIPS 150 (167)
T ss_dssp HHHHCC--------------------CCCCHHHHHHH-HHHHHHHTTC-----HHHHHHHHHTSCG
T ss_pred HHHHHHhcCCCccccccccCCCcccccccchHHHHHH-HHHHHHHHCC-----HHHHHHHHhcCCc
Confidence 1 1111 10 11133 5677778888 8888888776643
No 277
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=47.69 E-value=28 Score=23.25 Aligned_cols=45 Identities=9% Similarity=0.073 Sum_probs=22.2
Q ss_pred HHHHHHhcC-CHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCC
Q 029406 41 VLAEFQRQD-QVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKK 86 (194)
Q Consensus 41 ll~~~~~~~-~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 86 (194)
+|..+...+ ..-.|.++++.++ ..+...+..|..--|+.+...|.
T Consensus 23 Il~~L~~~~~~~~sa~ei~~~l~-~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 23 ILQMLDSAEQRHMSAEDVYKALM-EAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHHHCC-CCSBCHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhCCCCCCCHHHHHHHHH-hhCCCCCHHHHHHHHHHHHHCCc
Confidence 444444443 4455555555555 34444455555555555555443
No 278
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=46.65 E-value=58 Score=30.08 Aligned_cols=110 Identities=11% Similarity=0.024 Sum_probs=71.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC---------------
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLF--------------- 104 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p--------------- 104 (194)
.++..+...+.++.+.++..+.. -+...-..+=.+|...|++++|.++|.+.. .|+..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhhhhhccccccc
Confidence 46666777788888877665543 344443333355667899999999997642 11111
Q ss_pred --------CHHhHHHHHHHHhcCCChHHHHHHHHHhHhC-CC-CCCh--hhHHHHHHhhCCCCc
Q 029406 105 --------DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS-PA-TPIS--LPFRVILKGLIPYPE 156 (194)
Q Consensus 105 --------~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~-g~-~p~~--~ty~~ll~~~~~~g~ 156 (194)
-..-|..++..+-+.+.++.+.++-....+. +- .++. ..|..+++++...|+
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ 953 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGK 953 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCC
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCC
Confidence 1234788999999999999988876655443 21 1221 257778888877777
No 279
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=46.63 E-value=1.1e+02 Score=24.36 Aligned_cols=76 Identities=8% Similarity=0.106 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHhcCCCCCHHhHHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKK--VVEAKQVWEDLKREEVLFDQHTFGDII 113 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~l~~~m~~~g~~p~~~ty~~li 113 (194)
.-+..+|..|...++.++|...++++. ...+. .......+..++-+.+. .+.+.+++..+...|+-+.......+.
T Consensus 218 kki~~lL~EY~~s~D~~EA~~ci~EL~-~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~ 295 (358)
T 3eiq_C 218 KEIDMLLKEYLLSGDISEAEHCLKELE-VPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 295 (358)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHC-CTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHcc-CCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 345689999999999999999999996 22111 24445556666655443 456788888888887665544443333
No 280
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=46.09 E-value=32 Score=26.98 Aligned_cols=96 Identities=10% Similarity=0.057 Sum_probs=53.7
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCCCHHh---HH
Q 029406 35 KSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKK-VVEAKQVWEDLKREEVLFDQHT---FG 110 (194)
Q Consensus 35 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~l~~~m~~~g~~p~~~t---y~ 110 (194)
..-+..+|..|...|++++|...++++. ..... ....+..+..++-+... -+.+..++..+.+.|+-+.... |.
T Consensus 11 ~k~~~~ll~Ey~~~~d~~Ea~~ci~el~-~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~ 88 (339)
T 1ug3_A 11 EKKSKAIIEEYLHLNDMKEAVQCVQELA-SPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLY 88 (339)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHTTC-CGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHcC-CcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 3446689999999999999999888885 22221 22333344444433322 3445667777777765533333 33
Q ss_pred HHHHHHhcCC-ChHHHHHHHHHh
Q 029406 111 DIIRAFSDSG-LPSEAMFIYNEM 132 (194)
Q Consensus 111 ~li~~~~~~g-~~~~a~~l~~~M 132 (194)
.++..+-... ++-.|...+..+
T Consensus 89 ~~~~~l~Dl~lDiP~a~~~La~~ 111 (339)
T 1ug3_A 89 EILELAEDMEIDIPHVWLYLAEL 111 (339)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHH
T ss_pred HHHhhChHhhcCccchHHHHHHH
Confidence 3333332222 445556655555
No 281
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=45.46 E-value=1.5e+02 Score=25.50 Aligned_cols=121 Identities=9% Similarity=-0.031 Sum_probs=60.9
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH----hCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLA----RNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
.+.-+.+. +.+.|...|....+.. ..+......+-...+ ..+...++...+....... ++.....-.+...
T Consensus 221 ~~~rlar~-d~~~A~~~~~~~~~~~--~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~A 295 (618)
T 1qsa_A 221 AFASVARQ-DAENARLMIPSLAQAQ--QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMA 295 (618)
T ss_dssp HHHHHHHH-CHHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHH
T ss_pred HHHHHHhc-CHHHHHHHHHhhhhcc--CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHH
Confidence 34444444 7788888888886322 234333333333333 3342334445555443332 2332333334445
Q ss_pred hcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 117 SDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 117 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
.+.|+...|...|..|...... ...-.--+-+++...|+ .+.|..+|...
T Consensus 296 lr~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~-----~~~a~~~~~~~ 345 (618)
T 1qsa_A 296 LGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGR-----EAEAKEILHQL 345 (618)
T ss_dssp HHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTC-----HHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCC-----HHHHHHHHHHH
Confidence 5678888888888888653211 11112222334555677 55555554443
No 282
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=45.00 E-value=31 Score=23.41 Aligned_cols=44 Identities=14% Similarity=-0.016 Sum_probs=22.4
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCC
Q 029406 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKK 86 (194)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 86 (194)
++..+...+ .-.|.++++.++ ..+...+..|..--|+.+...|.
T Consensus 24 Il~~l~~~~-h~ta~ei~~~l~-~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 24 VLEAVDTLE-HATPDDILGEVR-KTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHHHHHHS-SBCHHHHHHHHH-TTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhcC-CCCHHHHHHHHH-hhCCCCCHhHHHHHHHHHHHCCc
Confidence 333333434 445566666665 34444555555555555555554
No 283
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=44.96 E-value=65 Score=21.34 Aligned_cols=68 Identities=12% Similarity=0.145 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCC--hHHHHHHHHHhHhCCCCCCh
Q 029406 73 FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGL--PSEAMFIYNEMRSSPATPIS 141 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~--~~~a~~l~~~M~~~g~~p~~ 141 (194)
..+.+|.=|...|+.++|.+.++++....+. ...++..+..++=+.+. .+.+..++..+...|+-+..
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 4577899999999999999999998643333 45566677777766542 46677789888877755433
No 284
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=42.90 E-value=35 Score=23.26 Aligned_cols=47 Identities=15% Similarity=0.135 Sum_probs=27.7
Q ss_pred HHHHHHHhcC-CHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCH
Q 029406 40 SVLAEFQRQD-QVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKV 87 (194)
Q Consensus 40 ~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 87 (194)
.+|..+...+ ..-.|.++++.++ ..+...+..|..--|+.+...|.+
T Consensus 21 ~Il~~L~~~~~~h~sa~ei~~~l~-~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 21 KILEVLQQPECQHISAEELYKKLI-DLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHHTSGGGSSEEHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3444554444 4556677777776 455555666666666666666654
No 285
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.32 E-value=1.4e+02 Score=24.29 Aligned_cols=131 Identities=12% Similarity=0.050 Sum_probs=80.9
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH----hCCCHHHHH--HHHHHHH--hcC-CCC-
Q 029406 35 KSDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLA----RNKKVVEAK--QVWEDLK--REE-VLF- 104 (194)
Q Consensus 35 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~g~~~~a~--~l~~~m~--~~g-~~p- 104 (194)
.+.+..++..|...++|+...+.+.-+.+.+|..+... ..++..+. .....+... .+..... ..| +-.
T Consensus 56 ~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai--~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE 133 (445)
T 4b4t_P 56 KEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSI--QYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVE 133 (445)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHH--HHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHH
Confidence 45577899999999999999888887765666654433 34444333 233322221 2222111 112 111
Q ss_pred --CHHhHHHHHHHHhcCCChHHHHHHHHHhHhC--CCCCC---hhhHHHHHHhhCCCCchHHhHHHHHhhhcccc
Q 029406 105 --DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS--PATPI---SLPFRVILKGLIPYPEFREKVKDDFLELFPDM 172 (194)
Q Consensus 105 --~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~--g~~p~---~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m 172 (194)
.......|...|-..|++.+|..++..+... |.... ...|...++.|...++ +..|..++...
T Consensus 134 ~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d-----~~~a~~~~~ki 203 (445)
T 4b4t_P 134 VERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGD-----YSQATVLSRKI 203 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHH
Confidence 2234467788899999999999999998542 32222 3467777788887888 77777666654
No 286
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=41.73 E-value=1e+02 Score=22.77 Aligned_cols=58 Identities=7% Similarity=0.050 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 029406 39 VSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100 (194)
Q Consensus 39 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 100 (194)
...|..-.....-..+..+.+.+. . .++...-...+..+.+.|..++|.++|-+....
T Consensus 63 ~~~l~~ki~eR~~~L~~~L~~~l~-~---~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~rs~ 120 (235)
T 2d2s_A 63 LNLISLKIEQRREAISSKLSQSIL-S---SNEIVHLKSGTENMIKLGLPEQALDLFLQNRSN 120 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-T---CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-h---cCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHH
Confidence 445555555555566677777664 3 566777888889999999999999999877544
No 287
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=41.67 E-value=17 Score=24.43 Aligned_cols=19 Identities=26% Similarity=0.167 Sum_probs=9.5
Q ss_pred HHHHHHhcCCHhHHHHHHH
Q 029406 41 VLAEFQRQDQVFLCMKLYD 59 (194)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~ 59 (194)
.|...++.|+++....+++
T Consensus 11 ~l~~A~~~g~~~~v~~ll~ 29 (165)
T 3twr_A 11 QLLEAAKAGDVETVKKLCT 29 (165)
T ss_dssp HHHHHHHHTCHHHHHHHCC
T ss_pred HHHHHHHhCCHHHHHHHHH
Confidence 3444455566555554443
No 288
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=40.44 E-value=92 Score=21.79 Aligned_cols=65 Identities=9% Similarity=0.052 Sum_probs=48.5
Q ss_pred cCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 029406 48 QDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRA 115 (194)
Q Consensus 48 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~ 115 (194)
.+++++|.++|+.+++. .+--...|...=..=.+.|++..|.+++..-...+-+| ..+..+.|..
T Consensus 73 i~D~d~aR~vy~~a~~~--hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~n 137 (161)
T 4h7y_A 73 IQEPDDARDYFQMARAN--CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALRN 137 (161)
T ss_dssp HHCGGGCHHHHHHHHHH--CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHHh
Confidence 48999999999999743 22337777777677778999999999999998877664 4445555544
No 289
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=40.02 E-value=83 Score=21.11 Aligned_cols=61 Identities=16% Similarity=0.029 Sum_probs=40.1
Q ss_pred HHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCc
Q 029406 95 EDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 95 ~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~ 156 (194)
..+++.|++++.. =-.++..+...+..-.|.++++.+.+.+-..+..|---.|+.+...|-
T Consensus 11 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 11 ETLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 4566788886654 445666666666777888999999877655555554445555655554
No 290
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=39.87 E-value=64 Score=19.81 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=13.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCC
Q 029406 85 KKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120 (194)
Q Consensus 85 g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g 120 (194)
...++|..+++.+... ....|..++.++.+.+
T Consensus 50 t~~~kar~Lld~l~~k----G~~af~~F~~aL~~~~ 81 (94)
T 2p1h_A 50 TQQQRAAMLIKMILKK----DNDSYVSFYNALLHEG 81 (94)
T ss_dssp SHHHHHHHHHHHHTTS----CHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHc----CHHHHHHHHHHHHHcC
Confidence 3344444444444333 2334444444444443
No 291
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=39.47 E-value=74 Score=20.36 Aligned_cols=31 Identities=3% Similarity=0.017 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCC
Q 029406 54 CMKLYDVVRKEIWYRPDMFFYRDMLMMLARNK 85 (194)
Q Consensus 54 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 85 (194)
|..+-+++. ..|+.|+.....-++..|...+
T Consensus 28 ae~L~eEfd-efGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQ-IFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHH-HHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcC
Confidence 444555554 4555555555555555555544
No 292
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=39.45 E-value=87 Score=21.19 Aligned_cols=67 Identities=9% Similarity=-0.112 Sum_probs=40.5
Q ss_pred hchhhHHHHHHHHHhcC---CHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 029406 33 LLKSDLVSVLAEFQRQD---QVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100 (194)
Q Consensus 33 ~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 100 (194)
++...-+..-.++++.. ++..++.+++.+.+ .+..-...+..-|=-++.+.|++++|.+..+.+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~-~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH-HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-cCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 44455555666666654 44567888887763 331112334444445666888888888888877654
No 293
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=39.11 E-value=51 Score=21.77 Aligned_cols=44 Identities=9% Similarity=-0.101 Sum_probs=32.0
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 029406 56 KLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100 (194)
Q Consensus 56 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 100 (194)
.+|+.+. ...+.|++..--.-|-.+...+++..|.++...+...
T Consensus 47 ~LfdkLn-~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 47 LLREQWA-GGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHH-HTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHh-cCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 3577777 5667666655555566666789999999999888764
No 294
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=38.82 E-value=99 Score=21.64 Aligned_cols=55 Identities=7% Similarity=0.042 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHH
Q 029406 52 FLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQH 107 (194)
Q Consensus 52 ~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 107 (194)
+.+.++|..|. ..||-.. ...|-.-=..+-..|++.+|..||..-.+.+-+|-..
T Consensus 77 ~~p~~if~~L~-~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLH-NQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHH-HTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHH-HCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 45888999999 7888876 4456666666777899999999999999998888643
No 295
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=38.61 E-value=18 Score=20.72 Aligned_cols=24 Identities=0% Similarity=-0.212 Sum_probs=18.5
Q ss_pred cCCHhHHHHHHHHHHhhcCCCCCH
Q 029406 48 QDQVFLCMKLYDVVRKEIWYRPDM 71 (194)
Q Consensus 48 ~~~~~~a~~~~~~m~~~~~~~p~~ 71 (194)
.=+++.|...|..++....++|+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 458899999999998555666653
No 296
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=38.58 E-value=62 Score=21.48 Aligned_cols=60 Identities=17% Similarity=0.203 Sum_probs=33.8
Q ss_pred hcCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHH
Q 029406 64 EIWYRPDMFFYRDMLMMLARNK-KVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSE 124 (194)
Q Consensus 64 ~~~~~p~~~~~~~li~~~~~~g-~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 124 (194)
+.|++++..=. .++..+...+ ..-.|.+|++.+.+.+-..+..|.--.++.+...|-+.+
T Consensus 11 ~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 11 KAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp HTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 56666554432 3444554444 555677777777766655566665555566666555543
No 297
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=38.31 E-value=85 Score=24.01 Aligned_cols=72 Identities=11% Similarity=-0.024 Sum_probs=53.1
Q ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC--CCCCChhhHHHHHHhh
Q 029406 79 MMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS--PATPISLPFRVILKGL 151 (194)
Q Consensus 79 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~--g~~p~~~ty~~ll~~~ 151 (194)
....+.|.+++++.-...-.+.. +-|...=..++..+|-.|++++|..=++...+- ...|-..+|..+|.+-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH
Confidence 34567899999988877666653 558888899999999999999998877765432 2334556677666654
No 298
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=38.03 E-value=62 Score=22.58 Aligned_cols=69 Identities=9% Similarity=0.023 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCH--HHHHHHHHHHHhcCCCCCHHh
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKV--VEAKQVWEDLKREEVLFDQHT 108 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~--~~a~~l~~~m~~~g~~p~~~t 108 (194)
....++|..|...+++++|...++++. ...+.| ... ..+|..-...++. +-+-.++..+.. ++-+....
T Consensus 11 kk~~~ii~EYf~~~D~~Ea~~~l~eL~-~p~~~~-~~V-~~~I~~aldrk~~ere~~s~LL~~L~~-~~ls~~~i 81 (165)
T 2rg8_A 11 KTLTPIIQEYFEHGDTNEVAEMLRDLN-LGEMKS-GVP-VLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDV 81 (165)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHT-CSGGGG-HHH-HHHHHHHHTSCHHHHHHHHHHHHHHBT-TTBCHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhC-CcccHH-HHH-HHHHHHHHcCCHHHHHHHHHHHHHHHH-CCCCHHHH
Confidence 345689999999999999999999986 322222 222 2333333333322 344567777743 54444443
No 299
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=37.71 E-value=13 Score=25.60 Aligned_cols=48 Identities=13% Similarity=0.164 Sum_probs=29.4
Q ss_pred HhHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 029406 51 VFLCMKLYDVVRKEIWYRP---DMFFYRDMLMMLARNKKVVEAKQVWEDLKR 99 (194)
Q Consensus 51 ~~~a~~~~~~m~~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 99 (194)
++.|+++.....+..|+.| +..++..+++...+.|-.++. +.|..|..
T Consensus 54 ~Elawk~~k~~L~~~g~~~~~~~~~s~rd~~r~a~~~GlI~d~-~~w~~m~~ 104 (146)
T 1jog_A 54 YELSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDM-SKWVAYRD 104 (146)
T ss_dssp HHHHHHHHHHHHHHHTCSCCCTTSCCHHHHHHHHHHTTSCSCH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHcCCCCcH-HHHHHHHH
Confidence 4566666666654555554 366667777777777766555 45555553
No 300
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=37.69 E-value=70 Score=21.69 Aligned_cols=63 Identities=13% Similarity=0.246 Sum_probs=34.8
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHH
Q 029406 60 VVRKEIWYRPDMFFYRDMLMMLARNK-KVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSE 124 (194)
Q Consensus 60 ~m~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 124 (194)
.++ ..|++++..=. .++..+...+ ..-.|.+|++.+.+.+-..+..|.--.|..+...|-+.+
T Consensus 7 ~l~-~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 7 ALK-DAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp HHH-HTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHH-HcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 344 56666554432 3344444444 455667777777666555555555555566666665543
No 301
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=37.39 E-value=89 Score=21.14 Aligned_cols=59 Identities=7% Similarity=0.099 Sum_probs=30.2
Q ss_pred hcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChH
Q 029406 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123 (194)
Q Consensus 64 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 123 (194)
..|++++.. =-.++..+...+..-.|.+|++.+.+.+-..+..|.--.+..+...|-+.
T Consensus 20 ~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 20 KNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 555554332 23444555555555566666666666554455555545555555555444
No 302
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=37.38 E-value=65 Score=23.52 Aligned_cols=13 Identities=15% Similarity=0.457 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhcC
Q 029406 5 SLMVAKELKRLQS 17 (194)
Q Consensus 5 a~~vi~~l~~~~~ 17 (194)
.+-+.|-|.|...
T Consensus 65 ~i~icQfL~RI~e 77 (211)
T 3bqo_A 65 TIYICQFLTRIAA 77 (211)
T ss_dssp HHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHc
Confidence 3456666766643
No 303
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=37.08 E-value=60 Score=25.13 Aligned_cols=45 Identities=7% Similarity=-0.003 Sum_probs=24.6
Q ss_pred HHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCC
Q 029406 93 VWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPA 137 (194)
Q Consensus 93 l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~ 137 (194)
++..+.+.|+.|...++.=++..+++.=.++.+..+|+-....|.
T Consensus 210 L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~ 254 (331)
T 3qye_A 210 LYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGT 254 (331)
T ss_dssp HHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCc
Confidence 444455555555555555555555555555555555555554443
No 304
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=36.12 E-value=1.5e+02 Score=22.93 Aligned_cols=70 Identities=9% Similarity=0.159 Sum_probs=47.3
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHhcCCCCCHHh
Q 029406 37 DLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKK--VVEAKQVWEDLKREEVLFDQHT 108 (194)
Q Consensus 37 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~l~~~m~~~g~~p~~~t 108 (194)
.+..+|..|...|+.++|...++++. ...+. ....+..+..+.-+.+. -+.+.+++..+...|+-+....
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~-~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELE-VPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHC-CGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcC-CCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 35578999999999999999999996 22111 23445555566655433 4556788888888876644443
No 305
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=34.69 E-value=34 Score=24.31 Aligned_cols=120 Identities=7% Similarity=-0.087 Sum_probs=69.4
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHH--HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHh--HHHHHHH
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFF--YRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHT--FGDIIRA 115 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t--y~~li~~ 115 (194)
..|...++.|+++....+++.+. +.+..++... -.+.+...+..|+.+-+ +.+.+.|..|+... -.+.+..
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~l~~ 85 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQ-QGGRELDIYNNLRQTPLHLAVITTLPSVV----RLLVTAGASPMALDRHGQTAAHL 85 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHH-HTTCCSCCCCTTSCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHHHH-hcCCCCCcccccCCCHHHHHHHcCCHHHH----HHHHHcCCCccccCCCCCCHHHH
Confidence 35666778899988888888776 5666655332 22445555677776544 44455676654432 1244555
Q ss_pred HhcCCChHHHHHHHHHhHhCCCCC---ChhhHHHHHHhhCCCCchHHhHHHHHhhhcc
Q 029406 116 FSDSGLPSEAMFIYNEMRSSPATP---ISLPFRVILKGLIPYPEFREKVKDDFLELFP 170 (194)
Q Consensus 116 ~~~~g~~~~a~~l~~~M~~~g~~p---~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~ 170 (194)
.+..|..+-+..+++.....++.+ +..-++.|..+ +..|. .+.+..+++
T Consensus 86 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A-~~~~~-----~~~~~~Ll~ 137 (241)
T 1k1a_A 86 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA-VNTEC-----QETVQLLLE 137 (241)
T ss_dssp HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHH-HHHTC-----HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHH-HHcCC-----HHHHHHHHH
Confidence 567888877666666654433343 33444454444 45566 555544444
No 306
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=34.68 E-value=70 Score=24.91 Aligned_cols=80 Identities=14% Similarity=0.138 Sum_probs=56.5
Q ss_pred HHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCC-hhhH--HHHHHhh----CCCCchHHhHHHH
Q 029406 92 QVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPI-SLPF--RVILKGL----IPYPEFREKVKDD 164 (194)
Q Consensus 92 ~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~-~~ty--~~ll~~~----~~~g~~~~~~~~~ 164 (194)
+++..+.+.|+.|...++.=++..+++.=.++.+..+|+.+...|.... ...| -+++..+ ....+ .+.
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d-----~~~ 304 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKD-----FQE 304 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCC-----HHH
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCC-----HHH
Confidence 4667777889998888888888888888888999999999888775533 2222 2333222 22456 788
Q ss_pred HhhhcccccccC
Q 029406 165 FLELFPDMIVYD 176 (194)
Q Consensus 165 a~~~~~~m~~~~ 176 (194)
+..+++++....
T Consensus 305 il~~L~~~p~~~ 316 (345)
T 2qfz_A 305 LLLFLQNLPTAH 316 (345)
T ss_dssp HHHHHTSCSCTT
T ss_pred HHHHHHcCCCcC
Confidence 888888886543
No 307
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=33.78 E-value=24 Score=20.30 Aligned_cols=9 Identities=33% Similarity=0.682 Sum_probs=3.7
Q ss_pred hHHHHHHHH
Q 029406 108 TFGDIIRAF 116 (194)
Q Consensus 108 ty~~li~~~ 116 (194)
||..+|..+
T Consensus 23 sweqamr~i 31 (59)
T 2b7e_A 23 SFSRIISEL 31 (59)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHHHHh
Confidence 344444444
No 308
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=33.31 E-value=1.5e+02 Score=21.96 Aligned_cols=68 Identities=10% Similarity=0.139 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ 106 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 106 (194)
..|+.+---|+.. .+.+..+|..|. ..||... ...|-.-=..+-..|++.+|..||..=.+.+-+|-.
T Consensus 117 ~RyLklWl~Ya~~--~~~p~~if~~L~-~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 117 VRYLRIWMQYVNY--IDEPVELFSFLA-HHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp HHHHHHHHHHHTT--CSCHHHHHHHHH-HTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred HHHHHHHHHHHHc--cCCHHHHHHHHH-HCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 3455555555553 368889999999 7888876 556666777777889999999999999988878743
No 309
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=32.86 E-value=76 Score=18.57 Aligned_cols=42 Identities=10% Similarity=0.183 Sum_probs=18.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 029406 74 YRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAF 116 (194)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~ 116 (194)
++.+++.++.-.-.++++..+++..+.|.. +..+|---++.+
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g~I-~l~~ylK~vR~L 46 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRGTI-PLDTFVKQGREL 46 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence 344444444444455555555555554422 333444333333
No 310
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=32.48 E-value=56 Score=22.07 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=33.6
Q ss_pred hcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHH
Q 029406 64 EIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSE 124 (194)
Q Consensus 64 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 124 (194)
+.|++++..= ..++..+...+ .-.|.+|++.+.+.+-..+..|.--.|+.+...|-+.+
T Consensus 12 ~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 70 (145)
T 3eyy_A 12 QRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSH 70 (145)
T ss_dssp TTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEE
Confidence 5677765442 23344444444 45677777777766655566555555555565555443
No 311
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=32.47 E-value=30 Score=27.09 Aligned_cols=44 Identities=16% Similarity=0.112 Sum_probs=21.3
Q ss_pred HHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCC
Q 029406 93 VWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSP 136 (194)
Q Consensus 93 l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g 136 (194)
++..+.+.|+.|...++.=++..+++.=.++.+..+|+-+...|
T Consensus 215 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 215 LFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 33444444555555555444544544444555555555444433
No 312
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=31.37 E-value=0.9 Score=38.47 Aligned_cols=75 Identities=11% Similarity=0.059 Sum_probs=43.9
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCC
Q 029406 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSG 120 (194)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g 120 (194)
+=.+....+++.+|++-|-.- -|...|..+|..+.+.|.+++-...+...++..- +...=+.|+-+|++.+
T Consensus 60 LgkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 60 LAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTN 130 (624)
T ss_dssp HHHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTSC
T ss_pred HHHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhhC
Confidence 344444555555555443222 2455667777777777777777776665544422 3334467777777777
Q ss_pred ChHH
Q 029406 121 LPSE 124 (194)
Q Consensus 121 ~~~~ 124 (194)
+..+
T Consensus 131 rL~e 134 (624)
T 3lvg_A 131 RLAE 134 (624)
T ss_dssp SSST
T ss_pred cHHH
Confidence 6654
No 313
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=31.23 E-value=1e+02 Score=19.65 Aligned_cols=58 Identities=10% Similarity=0.048 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHH-Hh----HhCCCCCChhhHHHH
Q 029406 88 VEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYN-EM----RSSPATPISLPFRVI 147 (194)
Q Consensus 88 ~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~-~M----~~~g~~p~~~ty~~l 147 (194)
-.|.+|-+++...|+.|+..+..-++..|...+- + +.++.+ .| ...|..|+..+.+.+
T Consensus 26 Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 26 ASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 3456677777777999999999999999988885 2 222211 12 344666776665543
No 314
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=30.66 E-value=1.5e+02 Score=21.45 Aligned_cols=55 Identities=13% Similarity=0.079 Sum_probs=45.3
Q ss_pred CHhHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Q 029406 50 QVFLCMKLYDVVRKEIWYRPD-MFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFD 105 (194)
Q Consensus 50 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 105 (194)
....+.++|..|. ..||... ...|-.-=..+...|++.+|..+|..=.+.+-+|-
T Consensus 94 ~~~~p~~if~~L~-~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 94 NFHESENTFKYMF-NKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp CHHHHHHHHHHHH-HHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccCCHHHHHHHHH-HCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3669999999999 6788776 55666677777788999999999999988887774
No 315
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=30.27 E-value=62 Score=24.79 Aligned_cols=43 Identities=5% Similarity=-0.092 Sum_probs=19.4
Q ss_pred HHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCC
Q 029406 94 WEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSP 136 (194)
Q Consensus 94 ~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g 136 (194)
+..+.+.|+.|...++.=++..+++.=.++.+..+|+-....|
T Consensus 177 ~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g 219 (310)
T 3hzj_A 177 HSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEG 219 (310)
T ss_dssp HHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Confidence 3334444444444444444444444444444444444444333
No 316
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.16 E-value=63 Score=26.13 Aligned_cols=62 Identities=8% Similarity=-0.149 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC--CCHHhHHHHHHHHhcCCChHHHHHHHHHhHh
Q 029406 73 FYRDMLMMLARNKKVVEAKQVWEDLKREEVL--FDQHTFGDIIRAFSDSGLPSEAMFIYNEMRS 134 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~--p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~ 134 (194)
+...+-..|.+.|++++|.+.+.++...... --...|-.+|..+...+++..+...+.....
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5667888899999999999999999875433 3456788999999999999999999888643
No 317
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=29.75 E-value=69 Score=21.07 Aligned_cols=48 Identities=17% Similarity=0.262 Sum_probs=30.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChH
Q 029406 76 DMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPS 123 (194)
Q Consensus 76 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 123 (194)
.++..+...+..-.|.+|++.+.+.+-..+..|.--.++.+...|-+.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 455555555556677777777777665556666555666666666544
No 318
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=29.73 E-value=1.4e+02 Score=20.79 Aligned_cols=54 Identities=13% Similarity=0.110 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhcCCCC-CHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCCh
Q 029406 88 VEAKQVWEDLKREEVLF-DQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPIS 141 (194)
Q Consensus 88 ~~a~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~ 141 (194)
+++..+|..|...|+-- -+.-|...-..+-..|++.+|..+|..-.+++-.|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 34778999999988553 5567888888888999999999999999998878764
No 319
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=29.33 E-value=2.2e+02 Score=22.84 Aligned_cols=90 Identities=9% Similarity=-0.023 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCCCHHhHHHH
Q 029406 39 VSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD----MFFYRDMLMMLARNKKVVEAKQVWEDLKREE--VLFDQHTFGDI 112 (194)
Q Consensus 39 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p~~~ty~~l 112 (194)
..+...|...|++.+|.+++..+++...-..| ...|-.-+..|...+++.++...+....... +.|+..+- +.
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~-a~ 181 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ-GA 181 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH-HH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH-HH
Q ss_pred HHHHh------cCCChHHHHHHH
Q 029406 113 IRAFS------DSGLPSEAMFIY 129 (194)
Q Consensus 113 i~~~~------~~g~~~~a~~l~ 129 (194)
|..|+ ..+++..|...|
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F 204 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYF 204 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHH
No 320
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=28.83 E-value=54 Score=18.71 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=8.9
Q ss_pred CChHHHHHHHHHhHhCCCCC
Q 029406 120 GLPSEAMFIYNEMRSSPATP 139 (194)
Q Consensus 120 g~~~~a~~l~~~M~~~g~~p 139 (194)
|+++.|+..+-.|...+..|
T Consensus 37 gdvd~aI~~LL~m~~~~~~~ 56 (59)
T 1wgl_A 37 GNKDAAINSLLQMGEEPSGP 56 (59)
T ss_dssp TCHHHHHHHHHHSSCCCCSC
T ss_pred CCHHHHHHHHHcCcCCCCCC
Confidence 44444444444444433333
No 321
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=28.79 E-value=2.2e+02 Score=22.59 Aligned_cols=76 Identities=12% Similarity=0.075 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCC--hHHHHHHHHHhHhCCCCCChhhHHHHH
Q 029406 72 FFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGL--PSEAMFIYNEMRSSPATPISLPFRVIL 148 (194)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~--~~~a~~l~~~M~~~g~~p~~~ty~~ll 148 (194)
...+.+|.=|...|+.++|.+.++++....+. ...++..+..++=+.+. .+....++..+...|+-+.......+.
T Consensus 218 kki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~ 295 (358)
T 3eiq_C 218 KEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 295 (358)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 35688899999999999999999999644333 34456666666655433 456777888888877655444333333
No 322
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=28.72 E-value=81 Score=25.10 Aligned_cols=74 Identities=14% Similarity=0.192 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCCCHHhHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPD----MFFYRDMLMMLARNKK-VVEAKQVWEDLKREEVLFDQHTFG 110 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~-~~~a~~l~~~m~~~g~~p~~~ty~ 110 (194)
.-+.++|..|...|++++|...++++. . |+ ...+..+..++-+... -+.+-.++..+...|+-+......
T Consensus 13 k~~~~ii~EY~~~~D~~Ea~~~l~eL~-~----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~ 87 (364)
T 3l6a_A 13 KLTETVVTEYLNSGNANEAVNGVREMR-A----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQ 87 (364)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHT-C----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhC-C----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 446689999999999999999999996 2 43 3344444444444322 244556777777777654444333
Q ss_pred HHHH
Q 029406 111 DIIR 114 (194)
Q Consensus 111 ~li~ 114 (194)
.+..
T Consensus 88 Gf~~ 91 (364)
T 3l6a_A 88 AFLN 91 (364)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 323
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=28.56 E-value=58 Score=21.78 Aligned_cols=50 Identities=14% Similarity=0.143 Sum_probs=34.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHH
Q 029406 75 RDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSE 124 (194)
Q Consensus 75 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 124 (194)
..++..+...+..-.|.+|++.+.+.+-..+..|.--.|+.+...|-+.+
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 66 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDV 66 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 45666666666667788888888777666677666666666677665543
No 324
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=26.28 E-value=2e+02 Score=22.26 Aligned_cols=67 Identities=12% Similarity=0.145 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCC--hHHHHHHHHHhHhCCCCCC
Q 029406 73 FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGL--PSEAMFIYNEMRSSPATPI 140 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~--~~~a~~l~~~M~~~g~~p~ 140 (194)
..+.+|.=|...|+.++|.+.++++....+. ...++..+..++=+.+. .+.+..++..+.+.|+-+.
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 4567888888899999999999988644333 34556666666666433 3556678888876665543
No 325
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=26.08 E-value=78 Score=22.47 Aligned_cols=49 Identities=8% Similarity=0.085 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhc
Q 029406 69 PDMFFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSD 118 (194)
Q Consensus 69 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~ 118 (194)
|....++-|+..++.-.-.++++..+.+....|. .+..+|---++.+++
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaR 157 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELAR 157 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4445567777777777777777777777777664 355556555555554
No 326
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.06 E-value=2.6e+02 Score=22.58 Aligned_cols=94 Identities=5% Similarity=-0.029 Sum_probs=68.5
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhh-cCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHh----cCCCCC--HHhH
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKE-IWYRPD---MFFYRDMLMMLARNKKVVEAKQVWEDLKR----EEVLFD--QHTF 109 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~p~---~~~~~~li~~~~~~g~~~~a~~l~~~m~~----~g~~p~--~~ty 109 (194)
.+...+...|++.+|..++..+..+ .+.-.. +..|...++.|...+++.+|..+..+... ....|+ ...|
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 4567777899999999999998632 232222 45888899999999999999999988753 112222 2456
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhH
Q 029406 110 GDIIRAFSDSGLPSEAMFIYNEMR 133 (194)
Q Consensus 110 ~~li~~~~~~g~~~~a~~l~~~M~ 133 (194)
...+..+...+++.+|...|.+.-
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 777777778888888877776653
No 327
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=25.93 E-value=66 Score=27.43 Aligned_cols=52 Identities=10% Similarity=0.017 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHH
Q 029406 36 SDLVSVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEA 90 (194)
Q Consensus 36 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a 90 (194)
.++..+|..|.+.|-.+.|.+++..+- ....-+...| ..|..|+|+|+++.+
T Consensus 517 dd~e~vL~iCa~l~L~~~ar~I~k~~g--~k~l~~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 517 DDIEWMLSICVEWRLPEIAKEIYTTLG--NQMLSAHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH--C-------------------------
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHH--HHHHHCccHH-HHHHHHHHcCChhhc
Confidence 567789999999999999999999995 3344455556 778889999988765
No 328
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=25.71 E-value=55 Score=23.01 Aligned_cols=111 Identities=6% Similarity=-0.098 Sum_probs=51.4
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHh--HHHHHH
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDM---FFYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHT--FGDIIR 114 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t--y~~li~ 114 (194)
..|...+..|+++-. +.+. +.|..++. .-++.| ...+..|+.+- ++.+.+.|..++... -.+.+.
T Consensus 42 t~L~~A~~~g~~~~v----~~Ll-~~g~~~~~~~~~g~t~L-~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~ 111 (231)
T 3aji_A 42 TALHWACSAGHTEIV----EFLL-QLGVPVNDKDDAGWSPL-HIAASAGXDEI----VKALLVKGAHVNAVNQNGCTPLH 111 (231)
T ss_dssp CHHHHHHHHTCHHHH----HHHH-HTTCCSCCCCTTSCCHH-HHHHHHTCHHH----HHHHHHTTCCTTCCCTTSCCHHH
T ss_pred CHHHHHHHcCcHHHH----HHHH-HhCCCCCCcCCCCCCHH-HHHHHcCHHHH----HHHHHHcCCCCCCCCCCCCCHHH
Confidence 345555566665444 3444 34444432 223333 34445566653 344445665544321 123344
Q ss_pred HHhcCCChHHHHHHHHHhHhCCCCCChh---hHHHHHHhhCCCCchHHhHHHHHhhhcc
Q 029406 115 AFSDSGLPSEAMFIYNEMRSSPATPISL---PFRVILKGLIPYPEFREKVKDDFLELFP 170 (194)
Q Consensus 115 ~~~~~g~~~~a~~l~~~M~~~g~~p~~~---ty~~ll~~~~~~g~~~~~~~~~a~~~~~ 170 (194)
..+..|+.+-+.. +.+.|..|+.. -.+.| ...+..|+ .+.+..+++
T Consensus 112 ~A~~~~~~~~~~~----Ll~~g~~~~~~~~~g~t~L-~~A~~~~~-----~~~v~~Ll~ 160 (231)
T 3aji_A 112 YAASKNRHEIAVM----LLEGGANPDAKDHYDATAM-HRAAAKGN-----LKMVHILLF 160 (231)
T ss_dssp HHHHTTCHHHHHH----HHHTTCCTTCCCTTSCCHH-HHHHHHTC-----HHHHHHHHH
T ss_pred HHHHcCCHHHHHH----HHHcCCCCCCcCCCCCcHH-HHHHHcCC-----HHHHHHHHh
Confidence 4456677665443 44456555432 22333 33334555 555444443
No 329
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=23.94 E-value=1.8e+02 Score=23.25 Aligned_cols=72 Identities=10% Similarity=-0.043 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCCh
Q 029406 69 PDMFFYRDMLMMLARNKK--VVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPIS 141 (194)
Q Consensus 69 p~~~~~~~li~~~~~~g~--~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~ 141 (194)
++..+|-.+|.-.....+ .+++.++++.+ -.|-.++.+.=.-|+..+.|....++...+.+-|++.+.+.+.
T Consensus 21 ~~~~t~~~il~~l~~g~~Ls~eEa~~~~~~i-~~G~~~~~QiaAfL~Alr~kGet~eEi~g~~~am~~~~~~v~~ 94 (377)
T 3r88_A 21 ASVPSWPQILGRLTDNRDLARGQAAWAMDQI-MTGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHAHPLPA 94 (377)
T ss_dssp ---CCHHHHHHHHHTTCCCCTTHHHHHHHHH-HTTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSCCCCT
T ss_pred CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhCCcCCC
No 330
>1xqo_A 8-oxoguanine DNA glycosylase; helix-hairpin-helix, archaea, P.aerophilum, PA-AGOG native, DNA repair, lyase; 1.03A {Pyrobaculum aerophilum} SCOP: a.96.1.6 PDB: 1xqp_A*
Probab=23.92 E-value=53 Score=24.85 Aligned_cols=48 Identities=19% Similarity=0.382 Sum_probs=34.0
Q ss_pred HHHHHHHHHh-HhCCCCC---ChhhHHHHHHhhCCCCchHHhHHHHHhhhcccccccCCchhhhhhhhhh
Q 029406 123 SEAMFIYNEM-RSSPATP---ISLPFRVILKGLIPYPEFREKVKDDFLELFPDMIVYDPPEDLFEDQEWR 188 (194)
Q Consensus 123 ~~a~~l~~~M-~~~g~~p---~~~ty~~ll~~~~~~g~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 188 (194)
+++...|... +..|++| |+.+| ++-++...|+ ..+++|.++++-..|+
T Consensus 197 ~~~~~~W~~Var~sgIPplHLDSilW--lig~~~~~~~----------------~~~~~~~~~~~~~~~~ 248 (256)
T 1xqo_A 197 EAVQKIWDAVARETGIPPLHLDTLLW--LAGRAVLYGE----------------NLHGVPKEVIALFQWR 248 (256)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHH--HHHHHHTTCC----------------CCSSSCHHHHHHTTCS
T ss_pred HHHHHHHHHHHHccCCCchhhhHHHH--Hhcccccccc----------------ccccCcHHHHHHHHHh
Confidence 4777888887 4468885 77777 6777777777 3667777777665554
No 331
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=23.88 E-value=63 Score=23.28 Aligned_cols=96 Identities=5% Similarity=-0.159 Sum_probs=52.0
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHHH-------HHHHHHHHH--hCCCHHHHHHHHHHHHhcC---------C
Q 029406 41 VLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMFF-------YRDMLMMLA--RNKKVVEAKQVWEDLKREE---------V 102 (194)
Q Consensus 41 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~-------~~~li~~~~--~~g~~~~a~~l~~~m~~~g---------~ 102 (194)
.|...++.|+++....+++.+. ..+..++... ++.|..+.. +.|+.+-+..+++.-...+ +
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 86 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLL-THKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPF 86 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHH-HHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCB
T ss_pred HHHHHHHhCCHHHHHHHHHHHH-hcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccc
Confidence 3445567788888878888776 5566555333 345555442 5677776666666543311 1
Q ss_pred C-CCHHhHHHHHHHHhcCCChHHHHHHHHHhHhCCCCCChh
Q 029406 103 L-FDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSSPATPISL 142 (194)
Q Consensus 103 ~-p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ 142 (194)
. .|..-++ .+...+..|+.+-+..++ +.|..++..
T Consensus 87 ~~~d~~g~t-~L~~A~~~g~~~~v~~Ll----~~ga~~~~~ 122 (260)
T 3jxi_A 87 RDVYYRGQT-ALHIAIERRCKHYVELLV----EKGADVHAQ 122 (260)
T ss_dssp CCSSEESBC-HHHHHHHTTCHHHHHHHH----HTTCCTTCC
T ss_pred cccccCCCC-HHHHHHHcCCHHHHHHHH----hCCCCcCcc
Confidence 1 0112223 344445677776544444 456555543
No 332
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=22.86 E-value=83 Score=22.66 Aligned_cols=87 Identities=13% Similarity=-0.125 Sum_probs=38.8
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhhcCCCCCHH---HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCH---HhHHHHH
Q 029406 40 SVLAEFQRQDQVFLCMKLYDVVRKEIWYRPDMF---FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQ---HTFGDII 113 (194)
Q Consensus 40 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~---~ty~~li 113 (194)
..|...++.|+++....+++. |..++.. .-.+.|...+..|+.+-+ +.+.+.|..|+. .-++ .+
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~-----g~~~~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t-~L 76 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEG-----GANVNFQEEEGGWTPLHNAVQMSREDIV----ELLLRHGADPVLRKKNGAT-PF 76 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT-----TCCTTCCCTTTCCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTCCC-HH
T ss_pred hHHHHHHHcCCHHHHHHHHHc-----CCCcccccCCCCCcHHHHHHHcCCHHHH----HHHHHcCCCCcccCCCCCC-HH
Confidence 344555666766554444432 3333211 112344455566666544 333445554432 2222 33
Q ss_pred HHHhcCCChHHHHHHHHHhHhCCCCCC
Q 029406 114 RAFSDSGLPSEAMFIYNEMRSSPATPI 140 (194)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~M~~~g~~p~ 140 (194)
...+..|..+- ++.+.+.|..++
T Consensus 77 ~~A~~~~~~~~----v~~Ll~~g~~~~ 99 (285)
T 1wdy_A 77 LLAAIAGSVKL----LKLFLSKGADVN 99 (285)
T ss_dssp HHHHHHTCHHH----HHHHHHTTCCTT
T ss_pred HHHHHcCCHHH----HHHHHHcCCCCC
Confidence 33345565544 344444555443
No 333
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=22.77 E-value=71 Score=21.50 Aligned_cols=6 Identities=17% Similarity=0.258 Sum_probs=2.3
Q ss_pred HhcCCH
Q 029406 46 QRQDQV 51 (194)
Q Consensus 46 ~~~~~~ 51 (194)
+..|+.
T Consensus 47 ~~~~~~ 52 (179)
T 3f6q_A 47 CREGRS 52 (179)
T ss_dssp HHTTCH
T ss_pred HHcCcH
Confidence 333433
No 334
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=22.68 E-value=1.9e+02 Score=19.76 Aligned_cols=67 Identities=9% Similarity=-0.112 Sum_probs=39.1
Q ss_pred hchhhHHHHHHHHHhcC---CHhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 029406 33 LLKSDLVSVLAEFQRQD---QVFLCMKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKRE 100 (194)
Q Consensus 33 ~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 100 (194)
++....+..-.++++.. ++..++.+++.+.+ .+..-.......|=-++.+.|++++|.+..+.+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~-~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH-HCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-cCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 44455556666666654 44567778877763 221112223333344566888888888888777665
No 335
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=22.63 E-value=68 Score=24.98 Aligned_cols=44 Identities=14% Similarity=0.370 Sum_probs=29.5
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 029406 57 LYDVVRKEIWYRPDMFFYRDMLMMLARNKKVVEAKQVWEDLKREE 101 (194)
Q Consensus 57 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g 101 (194)
+++++. ..|+.|..+++.=++..|++.=.++.+..+|+.+...|
T Consensus 215 L~~hL~-~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 215 LFAHFK-KNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHH-HTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHH-HcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 444555 46677777777667777776666777777777776665
No 336
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=22.27 E-value=67 Score=24.43 Aligned_cols=82 Identities=11% Similarity=0.075 Sum_probs=41.5
Q ss_pred HHHHHHHhcCCCCCHHhHHHHHHH-HhcCCCh-----HHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCchHHhHHHHH
Q 029406 92 QVWEDLKREEVLFDQHTFGDIIRA-FSDSGLP-----SEAMFIYNEMRSSPATPISLPFRVILKGLIPYPEFREKVKDDF 165 (194)
Q Consensus 92 ~l~~~m~~~g~~p~~~ty~~li~~-~~~~g~~-----~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~~~~~~~~~a 165 (194)
.++..|.+.+.......-++++=. .-|.|+. +.+..++..+.. +.|-...+..+++++ ++.+ .+...++
T Consensus 113 ~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~--v~~~~~v~~~l~~g~-ksKN--~R~R~e~ 187 (266)
T 2of3_A 113 VIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSD--VVGPLKMTPMLLDAL-KSKN--ARQRSEC 187 (266)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH--HHCHHHHHHHHHHGG-GCSC--HHHHHHH
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHH-ccCC--HHHHHHH
Confidence 345555566666665444444433 2344544 234445555543 346666777777766 3332 3444455
Q ss_pred hhhcccc-cccCCc
Q 029406 166 LELFPDM-IVYDPP 178 (194)
Q Consensus 166 ~~~~~~m-~~~~~~ 178 (194)
...+..+ ..+|.+
T Consensus 188 l~~l~~li~~~G~~ 201 (266)
T 2of3_A 188 LLVIEYYITNAGIS 201 (266)
T ss_dssp HHHHHHHHHHHCSG
T ss_pred HHHHHHHHHhcCCC
Confidence 5554444 356665
No 337
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=22.11 E-value=85 Score=19.15 Aligned_cols=32 Identities=13% Similarity=0.105 Sum_probs=20.4
Q ss_pred CCCCCHHhHHHHHHHHhcCCChHHHHHHHHHh
Q 029406 101 EVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEM 132 (194)
Q Consensus 101 g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M 132 (194)
+++|++.||+-+..++-+..-...++.+..++
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 46677777777777766665555555555543
No 338
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=21.76 E-value=3e+02 Score=21.66 Aligned_cols=21 Identities=19% Similarity=-0.118 Sum_probs=9.9
Q ss_pred hcCCCCCHHHHHHHHHHHHhC
Q 029406 64 EIWYRPDMFFYRDMLMMLARN 84 (194)
Q Consensus 64 ~~~~~p~~~~~~~li~~~~~~ 84 (194)
..++++|.....-|+..+...
T Consensus 87 ~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 87 QAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHTCCCCHHHHHHHHHHHTTS
T ss_pred HcCCCCCHHHHHHHHHHHHhC
Confidence 344445554444444444443
No 339
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=21.51 E-value=1e+02 Score=21.39 Aligned_cols=59 Identities=7% Similarity=-0.025 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCCh--HHHHHHHHHhH
Q 029406 73 FYRDMLMMLARNKKVVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLP--SEAMFIYNEMR 133 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~--~~a~~l~~~M~ 133 (194)
....+|.=|...++.++|...++++....+.| .....+|..-...++. +.+-.++..+.
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~--~~V~~~I~~aldrk~~ere~~s~LL~~L~ 72 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKS--GVPVLAVSLALEGKASHREMTSKLLSDLC 72 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCSGGGG--HHHHHHHHHHHTSCHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCcccHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 45677888888888888888888876443332 2223333333333322 23445666663
No 340
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=21.07 E-value=2e+02 Score=19.39 Aligned_cols=70 Identities=9% Similarity=-0.092 Sum_probs=48.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhcCCChHHHHHHHHHhHhC
Q 029406 66 WYRPDMFFYRDMLMMLARNKK---VVEAKQVWEDLKREEVLFDQHTFGDIIRAFSDSGLPSEAMFIYNEMRSS 135 (194)
Q Consensus 66 ~~~p~~~~~~~li~~~~~~g~---~~~a~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l~~~M~~~ 135 (194)
+-.|+..+--..-.+++++.. ..+++.++..+.+.+-.-.....=-|--|+.+.|++++|....+.+.+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 445565554445555666654 5678889988887662223455566667889999999999999988765
No 341
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=20.88 E-value=2.7e+02 Score=22.01 Aligned_cols=63 Identities=10% Similarity=0.059 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCCCHHhHHHHHHHHhcCCCh--HHHHHHHHHhHhCCC
Q 029406 73 FYRDMLMMLARNKKVVEAKQVWEDLKREE-VLFDQHTFGDIIRAFSDSGLP--SEAMFIYNEMRSSPA 137 (194)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~ty~~li~~~~~~g~~--~~a~~l~~~M~~~g~ 137 (194)
...++|.=|...|+.++|.+.+.++...+ +. ....+..+..++=+ +.. +.+-.++..+...|+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~-~~~v~~~i~~aLer-~~~~re~~~~LL~~L~~~~~ 79 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPKHFL-PEMLSKVIILSLDR-SDEDKEKASSLISLLKQEGI 79 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGH-HHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCchhhH-HHHHHHHHHHHHCC-ChHHHHHHHHHHHHHHHCCC
Confidence 44688999999999999999999985321 11 13344444444433 332 344457777766655
No 342
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=20.78 E-value=1.2e+02 Score=16.59 Aligned_cols=14 Identities=7% Similarity=-0.123 Sum_probs=5.9
Q ss_pred CCCHHHHHHHHHHH
Q 029406 84 NKKVVEAKQVWEDL 97 (194)
Q Consensus 84 ~g~~~~a~~l~~~m 97 (194)
.|+.+.|.+++-.|
T Consensus 31 ~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 31 NNDLDLTIGLLLKE 44 (49)
T ss_dssp TTCSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhc
Confidence 34444444444333
No 343
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=20.42 E-value=93 Score=18.40 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhc-CCCCCHHhHHHHHHHHhcCCC
Q 029406 87 VVEAKQVWEDLKRE-EVLFDQHTFGDIIRAFSDSGL 121 (194)
Q Consensus 87 ~~~a~~l~~~m~~~-g~~p~~~ty~~li~~~~~~g~ 121 (194)
.++|...|.+|.+. +|.| ..+|..++..++...+
T Consensus 14 ~eea~~~F~~LL~e~~V~~-~~tWe~~~~~i~~DpR 48 (71)
T 1uzc_A 14 KEEAKQAFKELLKEKRVPS-NASWEQAMKMIINDPR 48 (71)
T ss_dssp HHHHHHHHHHHHHHTTCCT-TCCHHHHHHHHHTSGG
T ss_pred HHHHHHHHHHHHHHcCcCC-CCCHHHHHHHHccCcc
Confidence 45555555555432 3332 2345555555544433
No 344
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=20.25 E-value=1.3e+02 Score=20.09 Aligned_cols=43 Identities=14% Similarity=-0.079 Sum_probs=22.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHhCCCCCChhhHHHHHHhhCCCCc
Q 029406 111 DIIRAFSDSGLPSEAMFIYNEMRSSPATPISLPFRVILKGLIPYPE 156 (194)
Q Consensus 111 ~li~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ll~~~~~~g~ 156 (194)
-.|...+..++.+-|.++++...+.| +...|.+.+..|-..=+
T Consensus 37 DAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlr 79 (125)
T 3qil_A 37 DAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLR 79 (125)
T ss_dssp HHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccC
Confidence 34444455555556666666555554 33455555555544433
No 345
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=20.08 E-value=1.1e+02 Score=18.74 Aligned_cols=35 Identities=9% Similarity=-0.045 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHh-cCCCCCHHhHHHHHHHHhcCCCh
Q 029406 87 VVEAKQVWEDLKR-EEVLFDQHTFGDIIRAFSDSGLP 122 (194)
Q Consensus 87 ~~~a~~l~~~m~~-~g~~p~~~ty~~li~~~~~~g~~ 122 (194)
.++|...|..|.. .+|.|+ .||...+...+...++
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~-~tWe~~~~~i~~DpRY 51 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAF-STWEKELHKIVFDPRY 51 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSS-SCHHHHHHHHHTCSGG
T ss_pred HHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHccCCcc
Confidence 3445555554443 233332 3455555444444433
Done!