BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029409
         (194 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8KE30|SAT_CHLTE Sulfate adenylyltransferase OS=Chlorobium tepidum (strain ATCC
           49652 / DSM 12025 / TLS) GN=sat PE=3 SV=1
          Length = 404

 Score = 32.3 bits (72), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%)

Query: 75  PVKLLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDPATP 134
           P+ L T  EQ   ++  E+  L+       +    +E+   + KA E   +    DPA P
Sbjct: 84  PITLSTSKEQADTIAIGEEVALVDDESGELMGSMKVEEKYCIDKAHECREVFKTDDPAHP 143

Query: 135 GALLTLSLGLL-LLGPSCVY 153
           G L+ ++ G + L GP  V+
Sbjct: 144 GVLMVMNQGDVNLAGPVKVF 163


>sp|Q4L5D0|COXX_STAHJ Protoheme IX farnesyltransferase OS=Staphylococcus haemolyticus
           (strain JCSC1435) GN=ctaB PE=3 SV=1
          Length = 303

 Score = 30.4 bits (67), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 7/56 (12%)

Query: 127 AATDPATPGALLTLSLGLLLLGPSCVYLVPEDYPWEVALQGVVALVSVVGGSAAFA 182
              D  +   LL LS G++LLG +C++L+  + P      GV+ L+ +VG  + ++
Sbjct: 94  TVNDRISDKNLLILSFGMMLLGEACLFLL--NVP-----SGVLGLIGIVGYVSYYS 142


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.129    0.358 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,512,225
Number of Sequences: 539616
Number of extensions: 2376133
Number of successful extensions: 6835
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 6823
Number of HSP's gapped (non-prelim): 28
length of query: 194
length of database: 191,569,459
effective HSP length: 111
effective length of query: 83
effective length of database: 131,672,083
effective search space: 10928782889
effective search space used: 10928782889
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)