Query 029409
Match_columns 194
No_of_seqs 53 out of 55
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 20:28:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029409.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029409hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qgp_A Protein (double strande 32.1 56 0.0019 22.2 3.9 43 84-128 16-64 (77)
2 1qbj_A Protein (double-strande 30.6 64 0.0022 22.5 4.1 43 84-128 12-60 (81)
3 1b0n_B Protein (SINI protein); 28.5 29 0.00097 23.8 1.9 22 92-113 14-35 (57)
4 2igr_A Anticancer peptide CB1A 23.5 54 0.0018 20.7 2.3 20 77-96 3-23 (34)
5 2lkp_A Transcriptional regulat 21.1 93 0.0032 21.3 3.5 49 77-127 27-77 (119)
6 1oyi_A Double-stranded RNA-bin 20.3 64 0.0022 23.2 2.5 29 97-127 34-62 (82)
7 2htj_A P fimbrial regulatory p 19.0 94 0.0032 20.3 3.0 29 97-127 18-46 (81)
8 2heo_A Z-DNA binding protein 1 18.0 62 0.0021 21.2 1.9 28 97-126 29-56 (67)
9 2jt1_A PEFI protein; solution 17.8 60 0.002 22.6 1.8 30 98-129 29-58 (77)
10 3qyf_A Crispr-associated prote 16.7 53 0.0018 29.2 1.6 21 97-117 229-249 (324)
No 1
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=32.07 E-value=56 Score=22.24 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=32.7
Q ss_pred HhhhHHHHHHhc----h--hhHHHHcCCchhhhhhhcchhhhhhccccccc
Q 029409 84 QLKLLSKAEKAG----L--LSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAA 128 (194)
Q Consensus 84 k~~LLskaEkaG----L--LS~aE~~GlSLs~iE~LGlLS~aE~lg~Ls~a 128 (194)
+.++|.-..+.| + --.|+++|+|-+.+.+ .|.+.|+.|++.-.
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~--~L~~L~~~G~I~~~ 64 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINR--VLYSLAKKGKLQKE 64 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHH--HHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHH--HHHHHHHCCCEEec
Confidence 355666666665 3 5578899999999999 59999999987544
No 2
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=30.64 E-value=64 Score=22.51 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=32.6
Q ss_pred HhhhHHHHHHhc----h--hhHHHHcCCchhhhhhhcchhhhhhccccccc
Q 029409 84 QLKLLSKAEKAG----L--LSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAA 128 (194)
Q Consensus 84 k~~LLskaEkaG----L--LS~aE~~GlSLs~iE~LGlLS~aE~lg~Ls~a 128 (194)
+.++|.-..+.| + -..|+++|+|-+.+++ .|.+.|+.|++.-.
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~--~L~~Le~~G~I~~~ 60 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINR--VLYSLAKKGKLQKE 60 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHH--HHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHH--HHHHHHHCCCEEec
Confidence 445666655666 3 4578899999999999 59999999988654
No 3
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=28.55 E-value=29 Score=23.75 Aligned_cols=22 Identities=27% Similarity=0.287 Sum_probs=17.5
Q ss_pred HHhchhhHHHHcCCchhhhhhh
Q 029409 92 EKAGLLSAAEKFGLSLSSIEKL 113 (194)
Q Consensus 92 EkaGLLS~aE~~GlSLs~iE~L 113 (194)
|...|+-.|.++|+|+..|++.
T Consensus 14 ewl~LI~~Ak~lGlsleEIref 35 (57)
T 1b0n_B 14 EWVELMVEAKEANISPEEIRKY 35 (57)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHH
Confidence 4455677788889999999994
No 4
>2igr_A Anticancer peptide CB1A; cecropin, antimicrobial peptide, ploycat peptide, cecropin fingerprint sequence, de novo protein; NMR {Hyalophora cecropia}
Probab=23.53 E-value=54 Score=20.67 Aligned_cols=20 Identities=40% Similarity=0.649 Sum_probs=14.0
Q ss_pred hhhhHHHHh-hhHHHHHHhch
Q 029409 77 KLLTRVEQL-KLLSKAEKAGL 96 (194)
Q Consensus 77 ~vL~~vEk~-~LLskaEkaGL 96 (194)
++++++|+. ++..+.|++|-
T Consensus 3 kvfkkiekkwkvfkkiekagp 23 (34)
T 2igr_A 3 KVFKKIEKKWKVFKKIEKAGP 23 (34)
T ss_dssp THHHHHHHHHHHHHHHHHHCC
T ss_pred chHHHHHHHHHHHHHHHHhCc
Confidence 677788764 66677777774
No 5
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=21.08 E-value=93 Score=21.35 Aligned_cols=49 Identities=18% Similarity=0.329 Sum_probs=32.5
Q ss_pred hhhhHHHHhhhHHHHHH--hchhhHHHHcCCchhhhhhhcchhhhhhcccccc
Q 029409 77 KLLTRVEQLKLLSKAEK--AGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSA 127 (194)
Q Consensus 77 ~vL~~vEk~~LLskaEk--aGLLS~aE~~GlSLs~iE~LGlLS~aE~lg~Ls~ 127 (194)
+.|....+.++|....+ ..+=..++++|+|-+.+-+ .|...|+.|++.-
T Consensus 27 ~~l~~~~~~~il~~L~~~~~s~~ela~~l~is~stvsr--~l~~Le~~Glv~~ 77 (119)
T 2lkp_A 27 QALATPSRLMILTQLRNGPLPVTDLAEAIGMEQSAVSH--QLRVLRNLGLVVG 77 (119)
T ss_dssp HHHCCHHHHHHHHHHHHCCCCHHHHHHHHSSCHHHHHH--HHHHHHHHCSEEE
T ss_pred HHhCCHHHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHH--HHHHHHHCCCEEE
Confidence 34444456666666555 2234568889999888877 5888888887654
No 6
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=20.32 E-value=64 Score=23.21 Aligned_cols=29 Identities=7% Similarity=0.156 Sum_probs=24.0
Q ss_pred hhHHHHcCCchhhhhhhcchhhhhhcccccc
Q 029409 97 LSAAEKFGLSLSSIEKLGLLSKAEEFGVLSA 127 (194)
Q Consensus 97 LS~aE~~GlSLs~iE~LGlLS~aE~lg~Ls~ 127 (194)
-..|+++|+|-+.+-+ .|.+.|+-|++--
T Consensus 34 ~eLAk~LgiSk~aVr~--~L~~Le~eG~I~~ 62 (82)
T 1oyi_A 34 AQLTRQLNMEKREVNK--ALYDLQRSAMVYS 62 (82)
T ss_dssp HHHHHHSSSCHHHHHH--HHHHHHHHTSSEE
T ss_pred HHHHHHHCcCHHHHHH--HHHHHHHCCCEEe
Confidence 5578899999999988 5888998888754
No 7
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=19.02 E-value=94 Score=20.34 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=23.2
Q ss_pred hhHHHHcCCchhhhhhhcchhhhhhcccccc
Q 029409 97 LSAAEKFGLSLSSIEKLGLLSKAEEFGVLSA 127 (194)
Q Consensus 97 LS~aE~~GlSLs~iE~LGlLS~aE~lg~Ls~ 127 (194)
=..++.+|+|-+.+-+ .|...++.|++.-
T Consensus 18 ~eLa~~lgvs~~tv~r--~L~~L~~~GlI~~ 46 (81)
T 2htj_A 18 AEIAEALAVTDYQARY--YLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHTSCHHHHHH--HHHHHHHHTSEEE
T ss_pred HHHHHHHCcCHHHHHH--HHHHHHHCCCEEE
Confidence 3458889999999888 5888888888763
No 8
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=18.00 E-value=62 Score=21.18 Aligned_cols=28 Identities=11% Similarity=0.199 Sum_probs=23.7
Q ss_pred hhHHHHcCCchhhhhhhcchhhhhhccccc
Q 029409 97 LSAAEKFGLSLSSIEKLGLLSKAEEFGVLS 126 (194)
Q Consensus 97 LS~aE~~GlSLs~iE~LGlLS~aE~lg~Ls 126 (194)
=-.|+++|+|-+.+.+ .+...++.|++.
T Consensus 29 ~eLA~~lglsr~tv~~--~l~~L~~~G~I~ 56 (67)
T 2heo_A 29 FQLVKKCQVPKKTLNQ--VLYRLKKEDRVS 56 (67)
T ss_dssp HHHHHHHCSCHHHHHH--HHHHHHHTTSEE
T ss_pred HHHHHHHCcCHHHHHH--HHHHHHHCCcEe
Confidence 4578999999999999 589999988853
No 9
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=17.80 E-value=60 Score=22.59 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=24.6
Q ss_pred hHHHHcCCchhhhhhhcchhhhhhcccccccC
Q 029409 98 SAAEKFGLSLSSIEKLGLLSKAEEFGVLSAAT 129 (194)
Q Consensus 98 S~aE~~GlSLs~iE~LGlLS~aE~lg~Ls~a~ 129 (194)
..++.+|+|.+.+.+ -|.+.|+.|+|.-..
T Consensus 29 EIa~~lgvS~~TVrr--~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 29 DIADAAGLSIYQVRL--YLEQLHDVGVLEKVN 58 (77)
T ss_dssp HHHHHHTCCHHHHHH--HHHHHHHTTSEEEES
T ss_pred HHHHHHCCCHHHHHH--HHHHHHHCCcEEecC
Confidence 468899999999988 599999999886553
No 10
>3qyf_A Crispr-associated protein; helix-turn-helix, antiviral protein, viral resistance, nucle binding domain; 1.90A {Sulfolobus solfataricus}
Probab=16.72 E-value=53 Score=29.18 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=18.0
Q ss_pred hhHHHHcCCchhhhhhhcchh
Q 029409 97 LSAAEKFGLSLSSIEKLGLLS 117 (194)
Q Consensus 97 LS~aE~~GlSLs~iE~LGlLS 117 (194)
-+.||++|++++.+|++||+.
T Consensus 229 ~~la~~lgi~v~~L~~~gli~ 249 (324)
T 3qyf_A 229 EKRAEELGIPVRLLEAKMLVE 249 (324)
T ss_dssp HHHHHHTTCCHHHHHHTTSEE
T ss_pred HHHHHHhCCCHHHHHHCCCeE
Confidence 456899999999999999974
Done!