Query 029409
Match_columns 194
No_of_seqs 53 out of 55
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 20:28:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029409.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029409hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q08a_ a.6.1.3 (A:) Transcrip 34.6 8.6 0.00063 25.7 1.8 26 91-118 3-28 (94)
2 d1z05a1 a.4.5.63 (A:10-80) Tra 24.8 43 0.0031 20.4 3.9 44 81-126 5-51 (71)
3 d1umqa_ a.4.1.12 (A:) Photosyn 16.8 1E+02 0.0076 18.6 4.4 36 77-112 15-52 (60)
4 d2cfxa1 a.4.5.32 (A:1-63) Tran 12.0 1.1E+02 0.0077 18.5 3.4 29 96-126 22-50 (63)
5 d2v5pc1 g.1.1.1 (C:6-63) Insul 11.5 33 0.0024 22.2 0.7 17 3-19 11-27 (58)
6 d1rp3a1 a.4.13.1 (A:87-163) Si 10.9 32 0.0024 21.4 0.5 23 98-122 31-53 (77)
7 d2cg4a1 a.4.5.32 (A:4-66) Regu 10.7 1.3E+02 0.0092 18.0 3.4 27 98-126 24-50 (63)
8 d1b9ma1 a.4.5.8 (A:-1-126) N-t 9.5 91 0.0066 20.5 2.5 40 81-122 19-59 (127)
9 d1q06a_ a.6.1.3 (A:) Transcrip 9.1 70 0.0051 21.3 1.8 21 92-112 45-65 (127)
10 d1z6ra1 a.4.5.63 (A:12-81) Mlc 8.4 1.7E+02 0.012 17.7 3.4 40 85-126 8-50 (70)
No 1
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=34.61 E-value=8.6 Score=25.70 Aligned_cols=26 Identities=35% Similarity=0.538 Sum_probs=19.7
Q ss_pred HHHhchhhHHHHcCCchhhhhhhcchhh
Q 029409 91 AEKAGLLSAAEKFGLSLSSIEKLGLLSK 118 (194)
Q Consensus 91 aEkaGLLS~aE~~GlSLs~iE~LGlLS~ 118 (194)
.++.-++-.+.++|+||+.|-+ ||..
T Consensus 3 l~RL~fI~~ar~lGFsL~EI~~--ll~l 28 (94)
T d1q08a_ 3 LQRLKFIRHARQLGFSLESIRE--LLSI 28 (94)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHH--HHHh
Confidence 4556677788899999999988 4544
No 2
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=24.79 E-value=43 Score=20.43 Aligned_cols=44 Identities=14% Similarity=0.226 Sum_probs=30.3
Q ss_pred HHHHhhhHHHHHHhchhh---HHHHcCCchhhhhhhcchhhhhhccccc
Q 029409 81 RVEQLKLLSKAEKAGLLS---AAEKFGLSLSSIEKLGLLSKAEEFGVLS 126 (194)
Q Consensus 81 ~vEk~~LLskaEkaGLLS---~aE~~GlSLs~iE~LGlLS~aE~lg~Ls 126 (194)
+.-+.++|.-..+.|=+| .|+..|+|.+.+-+ .+...++.|++.
T Consensus 5 ~~N~~~Il~~l~~~g~~sr~eLa~~~glS~~Tv~~--~l~~L~~~Glv~ 51 (71)
T d1z05a1 5 QINAGRVYKLIDQKGPISRIDLSKESELAPASITK--ITRELIDAHLIH 51 (71)
T ss_dssp HHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHH--HHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHH--HHHHHHHCCCEE
Confidence 333444555555555444 46789999999988 688888888775
No 3
>d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=16.77 E-value=1e+02 Score=18.60 Aligned_cols=36 Identities=11% Similarity=0.110 Sum_probs=28.5
Q ss_pred hhhhHHHHhhhHHHHHHhch--hhHHHHcCCchhhhhh
Q 029409 77 KLLTRVEQLKLLSKAEKAGL--LSAAEKFGLSLSSIEK 112 (194)
Q Consensus 77 ~vL~~vEk~~LLskaEkaGL--LS~aE~~GlSLs~iE~ 112 (194)
.-|..+|+.-+....++.|- --+|+.+|+|-+.+-+
T Consensus 15 ~~l~~~Er~~I~~aL~~~~gn~~~aA~~LGIsR~TL~r 52 (60)
T d1umqa_ 15 MSADRVRWEHIQRIYEMCDRNVSETARRLNMHRRTLQR 52 (60)
T ss_dssp SCHHHHHHHHHHHHHHHTTSCHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCcHHHHHHHHCCCHHHHHH
Confidence 34778999999998888886 5678899999877543
No 4
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=12.03 E-value=1.1e+02 Score=18.50 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=22.7
Q ss_pred hhhHHHHcCCchhhhhhhcchhhhhhccccc
Q 029409 96 LLSAAEKFGLSLSSIEKLGLLSKAEEFGVLS 126 (194)
Q Consensus 96 LLS~aE~~GlSLs~iE~LGlLS~aE~lg~Ls 126 (194)
.-..|++.|+|-+.+.+- +.+.|+.|++.
T Consensus 22 ~~~iA~~lgis~~tv~~R--i~~L~~~giI~ 50 (63)
T d2cfxa1 22 MRELGRKIKLSPPSVTER--VRQLESFGIIK 50 (63)
T ss_dssp HHHHHHHHTCCHHHHHHH--HHHHHHTTSEE
T ss_pred HHHHHHHHCcCHHHHHHH--HHHHHHCCCee
Confidence 455788999999988874 78888888764
No 5
>d2v5pc1 g.1.1.1 (C:6-63) Insulin-like growth factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.46 E-value=33 Score=22.23 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=11.5
Q ss_pred ccccccCCCCccccCCC
Q 029409 3 AAAFYGGSRGIPCIHPP 19 (194)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (194)
+=.++||.|++|-+++.
T Consensus 11 aL~~VCg~rGfy~~~~~ 27 (58)
T d2v5pc1 11 TLQFVCGDRGFYFSRPA 27 (58)
T ss_dssp HHHHHSTTSCBCCCC--
T ss_pred HHHHHHcCCCccccCCc
Confidence 34589999998865544
No 6
>d1rp3a1 a.4.13.1 (A:87-163) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=10.90 E-value=32 Score=21.45 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=16.6
Q ss_pred hHHHHcCCchhhhhhhcchhhhhhc
Q 029409 98 SAAEKFGLSLSSIEKLGLLSKAEEF 122 (194)
Q Consensus 98 S~aE~~GlSLs~iE~LGlLS~aE~l 122 (194)
-.|+.+|+|..++++ ++......
T Consensus 31 EiA~~lg~s~~e~~~--~l~~~~~~ 53 (77)
T d1rp3a1 31 EVAKELGISTEELFK--TLDKINFS 53 (77)
T ss_dssp HHHHHHTSCHHHHHH--HHHHHHHH
T ss_pred HHHHHHCcCHHHHHH--HHHHHhcC
Confidence 468899999999998 35444433
No 7
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=10.69 E-value=1.3e+02 Score=18.02 Aligned_cols=27 Identities=26% Similarity=0.503 Sum_probs=20.9
Q ss_pred hHHHHcCCchhhhhhhcchhhhhhccccc
Q 029409 98 SAAEKFGLSLSSIEKLGLLSKAEEFGVLS 126 (194)
Q Consensus 98 S~aE~~GlSLs~iE~LGlLS~aE~lg~Ls 126 (194)
-.|++.|+|.+.+.+- +.+.++.|++.
T Consensus 24 eiA~~l~ls~~~v~~R--i~rL~~~GiI~ 50 (63)
T d2cg4a1 24 ELAKQFGVSPETIHVR--VEKMKQAGIIT 50 (63)
T ss_dssp HHHHHHTSCHHHHHHH--HHHHHHHTSEE
T ss_pred HHHHHHCcCHHHHHHH--HHHHHHCCCeE
Confidence 4688999999888774 77778887664
No 8
>d1b9ma1 a.4.5.8 (A:-1-126) N-terminal domain of molybdate-dependent transcriptional regulator ModE {Escherichia coli [TaxId: 562]}
Probab=9.48 E-value=91 Score=20.47 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=28.8
Q ss_pred HHHHhhhHHHHHHhch-hhHHHHcCCchhhhhhhcchhhhhhc
Q 029409 81 RVEQLKLLSKAEKAGL-LSAAEKFGLSLSSIEKLGLLSKAEEF 122 (194)
Q Consensus 81 ~vEk~~LLskaEkaGL-LS~aE~~GlSLs~iE~LGlLS~aE~l 122 (194)
..+++.++-.+.+.|= -.+|+++|+|-+.+-+ .+...|+.
T Consensus 19 ~~~~l~~~~ai~~~gs~~~AA~~l~~sq~avs~--~i~~lE~~ 59 (127)
T d1b9ma1 19 DPRRISLLKHIALSGSISQGAKDAGISYKSAWD--AINEMNQL 59 (127)
T ss_dssp CHHHHHHHHHHHHHSSHHHHHHHHTCCHHHHHH--HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCChHHHHHHhcCChhHHHH--HHHHHHHH
Confidence 4556667777666665 4457889999999888 47777764
No 9
>d1q06a_ a.6.1.3 (A:) Transcriptional regulator CueR {Escherichia coli [TaxId: 562]}
Probab=9.09 E-value=70 Score=21.28 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=14.4
Q ss_pred HHhchhhHHHHcCCchhhhhh
Q 029409 92 EKAGLLSAAEKFGLSLSSIEK 112 (194)
Q Consensus 92 EkaGLLS~aE~~GlSLs~iE~ 112 (194)
+...++-.+...|+||++|.+
T Consensus 45 ~~l~~I~~lr~~G~sl~eI~~ 65 (127)
T d1q06a_ 45 NELTLLRQARQVGFNLEESGE 65 (127)
T ss_dssp HHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHH
Confidence 344445567778888888876
No 10
>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=8.37 E-value=1.7e+02 Score=17.70 Aligned_cols=40 Identities=18% Similarity=0.161 Sum_probs=26.0
Q ss_pred hhhHHHHHHhchhh---HHHHcCCchhhhhhhcchhhhhhccccc
Q 029409 85 LKLLSKAEKAGLLS---AAEKFGLSLSSIEKLGLLSKAEEFGVLS 126 (194)
Q Consensus 85 ~~LLskaEkaGLLS---~aE~~GlSLs~iE~LGlLS~aE~lg~Ls 126 (194)
..+|...-+.|-+| .++..|||.+.+-+ ++....+.|++-
T Consensus 8 ~~Il~~i~~~g~~sr~eLa~~~gLS~~Tvs~--iv~~L~~~glv~ 50 (70)
T d1z6ra1 8 GAVYRLIDQLGPVSRIDLSRLAQLAPASITK--IVHEMLEAHLVQ 50 (70)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTCCHHHHHH--HHHHHHHHTSEE
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCcCHHHHHH--HHHHHHHCCCEE
Confidence 33444444444443 46788999988877 577777777764
Done!