BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>029410
MWLMKCPALVSRSLKIPSSDNDDDDSARPVAKVILSIDPLQSNEDSSSSSSSSSTRFTME
LISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKL
CRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMMISTGFTVLWLTSFLCSVELCFALCYFW
ENPFSVYIQVRLIL

High Scoring Gene Products

Symbol, full name Information P value
AT1G75510 protein from Arabidopsis thaliana 6.0e-32

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029410
        (194 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2005674 - symbol:AT1G75510 species:3702 "Arabi...   350  6.0e-32   1


>TAIR|locus:2005674 [details] [associations]
            symbol:AT1G75510 species:3702 "Arabidopsis thaliana"
            [GO:0003824 "catalytic activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA]
            [GO:0005674 "transcription factor TFIIF complex" evidence=IEA;ISS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=IEA;RCA] [GO:0006367 "transcription initiation from RNA
            polymerase II promoter" evidence=IEA;ISS] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0005739
            "mitochondrion" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
            [GO:0000394 "RNA splicing, via endonucleolytic cleavage and
            ligation" evidence=RCA] InterPro:IPR003196 InterPro:IPR011039
            InterPro:IPR016640 Pfam:PF02270 PIRSF:PIRSF015849 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003743 KO:K03139
            GO:GO:0006367 GO:GO:0008026 EMBL:AC006434 SUPFAM:SSF50916
            GO:GO:0005674 eggNOG:COG5090 PANTHER:PTHR10445 HSSP:P13984
            OMA:IDNDRGV EMBL:AF324673 EMBL:AF327423 EMBL:AF339714 EMBL:AY463609
            EMBL:AK226474 IPI:IPI00532425 RefSeq:NP_177683.1 UniGene:At.15696
            ProteinModelPortal:Q9LQZ4 SMR:Q9LQZ4 STRING:Q9LQZ4 PaxDb:Q9LQZ4
            PRIDE:Q9LQZ4 EnsemblPlants:AT1G75510.1 GeneID:843887
            KEGG:ath:AT1G75510 TAIR:At1g75510 HOGENOM:HOG000238322
            InParanoid:Q9LQZ4 PhylomeDB:Q9LQZ4 ProtClustDB:CLSN2914241
            ArrayExpress:Q9LQZ4 Genevestigator:Q9LQZ4 Uniprot:Q9LQZ4
        Length = 261

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 69/157 (43%), Positives = 100/157 (63%)

Query:     1 MWLMKCPALVSRSL-KIPSSDNDD---DDSARPVAKVILSIDPLQSNEDXXXXXXXXXTR 56
             +WLMKCP +V ++  KI +S +      DS   +AK++  +DPL+ +             
Sbjct:    16 IWLMKCPVVVDKAWHKIAASSSSSFASSDSPPDMAKIVREVDPLRDDSP---------PE 66

Query:    57 FTMELISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMEN 116
             F M ++  E GN PK Y+++M  D +PM  F++ + G  + EGK+ +KFDM+P+ E +E 
Sbjct:    67 FKMYMVGAEYGNMPKCYALNMFTDFVPMGGFSDVNQGCAAAEGKVDHKFDMKPYGETIEE 126

Query:   117 YGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMM 153
             Y +LCRERT+K M K+RQIQVIDND G HMRPMPGM+
Sbjct:   127 YARLCRERTSKAMVKNRQIQVIDNDRGVHMRPMPGML 163


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.133   0.403    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      194       185   0.00080  110 3  11 22  0.42    32
                                                     31  0.41    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  597 (63 KB)
  Total size of DFA:  171 KB (2100 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.55u 0.13s 17.68t   Elapsed:  00:00:01
  Total cpu time:  17.55u 0.13s 17.68t   Elapsed:  00:00:01
  Start:  Fri May 10 19:05:09 2013   End:  Fri May 10 19:05:10 2013

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