BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029410
(194 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255587521|ref|XP_002534300.1| Transcription initiation factor IIF subunit beta, putative [Ricinus
communis]
gi|223525544|gb|EEF28082.1| Transcription initiation factor IIF subunit beta, putative [Ricinus
communis]
Length = 278
Score = 216 bits (551), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 110/158 (69%), Positives = 128/158 (81%), Gaps = 10/158 (6%)
Query: 1 MWLMKCPALVSRSLKI-PSSDNDDDDSARPVAKVILSIDPLQSNEDSSSSSSSSSTRFTM 59
+WLMKCPALVS SLK PSS D+D +RP+AKVILSI+PL SN+D+SS +FTM
Sbjct: 40 VWLMKCPALVSNSLKKNPSSP--DNDPSRPIAKVILSINPLNSNDDNSSR------QFTM 91
Query: 60 ELISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGK 119
EL ESGNAPK YSMDMS+D IPM V +ES+ GK+SVEGKI KFDMRPH EN+ENY K
Sbjct: 92 ELAGNESGNAPKSYSMDMSEDFIPMFVLSESAQGKVSVEGKILYKFDMRPHTENLENYAK 151
Query: 120 LCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMMISTG 157
+CRERT KYMTK RQIQ+IDNDNGSHMRPMP +MI++G
Sbjct: 152 MCRERTKKYMTKGRQIQIIDNDNGSHMRPMP-LMIASG 188
>gi|356511855|ref|XP_003524637.1| PREDICTED: general transcription factor IIF subunit 2-like [Glycine
max]
Length = 252
Score = 212 bits (539), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 103/153 (67%), Positives = 122/153 (79%), Gaps = 11/153 (7%)
Query: 1 MWLMKCPALVSRSLKIPSSDNDDDDSARPVAKVILSIDPLQSNEDSSSSSSSSSTRFTME 60
+WLMKCP LVSRSL+ P SD +RPVAKV++SIDPL SN+D S +FTME
Sbjct: 20 VWLMKCPPLVSRSLRAPPSD-----PSRPVAKVVVSIDPLNSNDDDSPP------QFTME 68
Query: 61 LISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKL 120
L TE+G+ P+ Y MDMSKD IPMSVF+++ GKISVEGKI NKFDMRPH++ +E YGKL
Sbjct: 69 LAGTEAGHIPRCYVMDMSKDFIPMSVFSDTPQGKISVEGKILNKFDMRPHNQTLELYGKL 128
Query: 121 CRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMM 153
CRERTNKYM KSRQIQVIDND+G+HMRPMPGM+
Sbjct: 129 CRERTNKYMVKSRQIQVIDNDSGAHMRPMPGMI 161
>gi|225449108|ref|XP_002274802.1| PREDICTED: general transcription factor IIF subunit 2 [Vitis
vinifera]
Length = 257
Score = 205 bits (522), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 107/159 (67%), Positives = 130/159 (81%), Gaps = 9/159 (5%)
Query: 1 MWLMKCPALVSRSLKIPSSDNDDDDSARPVAKVILSIDPLQSNEDSSSSSSSSSTRFTME 60
+WLMKCP +VSRSL S+ + S RPVAKVI+S+DPL +N+D S +FTME
Sbjct: 20 VWLMKCPPVVSRSLSSSSASD----SLRPVAKVIVSLDPLLANDDDDSPP-----QFTME 70
Query: 61 LISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKL 120
L TESGNAPK YSMDMS+D IPM+VF+ESS G+ +VEGKI NKFDM+PH+EN++NYGKL
Sbjct: 71 LAGTESGNAPKCYSMDMSQDFIPMAVFSESSQGRTAVEGKILNKFDMKPHNENIQNYGKL 130
Query: 121 CRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMMISTGFT 159
CRERT+KYMTKSRQIQVIDNDNGSHMRPMPGM+I++ +
Sbjct: 131 CRERTSKYMTKSRQIQVIDNDNGSHMRPMPGMVIASAVS 169
>gi|296086049|emb|CBI31490.3| unnamed protein product [Vitis vinifera]
Length = 300
Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/159 (67%), Positives = 130/159 (81%), Gaps = 9/159 (5%)
Query: 1 MWLMKCPALVSRSLKIPSSDNDDDDSARPVAKVILSIDPLQSNEDSSSSSSSSSTRFTME 60
+WLMKCP +VSRSL S+ + S RPVAKVI+S+DPL +N+D S +FTME
Sbjct: 63 VWLMKCPPVVSRSLSSSSASD----SLRPVAKVIVSLDPLLANDDDDSPP-----QFTME 113
Query: 61 LISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKL 120
L TESGNAPK YSMDMS+D IPM+VF+ESS G+ +VEGKI NKFDM+PH+EN++NYGKL
Sbjct: 114 LAGTESGNAPKCYSMDMSQDFIPMAVFSESSQGETAVEGKILNKFDMKPHNENIQNYGKL 173
Query: 121 CRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMMISTGFT 159
CRERT+KYMTKSRQIQVIDNDNGSHMRPMPGM+I++ +
Sbjct: 174 CRERTSKYMTKSRQIQVIDNDNGSHMRPMPGMVIASAVS 212
>gi|147863867|emb|CAN81117.1| hypothetical protein VITISV_005903 [Vitis vinifera]
Length = 584
Score = 202 bits (513), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 107/168 (63%), Positives = 128/168 (76%), Gaps = 13/168 (7%)
Query: 1 MWLMKCPALVSRSLKIPSSDNDDDDSARPVAKVILSIDPLQSNEDSSSSSSS-------- 52
+WLMKCP +VSRS S + DS RPVAKVI+S+DPL +N+D S
Sbjct: 20 VWLMKCPPVVSRS----LSSSSASDSLRPVAKVIVSLDPLLANDDDDSPPQGFMIAHEHA 75
Query: 53 -SSTRFTMELISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHH 111
FTMEL TESGNAPK YSMDMS+D IPM+VF+ESS G+ +VEGKI NKFDM+PH+
Sbjct: 76 FDYELFTMELAGTESGNAPKCYSMDMSQDFIPMAVFSESSQGRTAVEGKILNKFDMKPHN 135
Query: 112 ENMENYGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMMISTGFT 159
EN++NYGKLCRERT+KYMTKSRQIQVIDNDNGSHMRPMPGM+I++ +
Sbjct: 136 ENIQNYGKLCRERTSKYMTKSRQIQVIDNDNGSHMRPMPGMVIASAVS 183
>gi|297819938|ref|XP_002877852.1| hypothetical protein ARALYDRAFT_348323 [Arabidopsis lyrata subsp.
lyrata]
gi|297323690|gb|EFH54111.1| hypothetical protein ARALYDRAFT_348323 [Arabidopsis lyrata subsp.
lyrata]
Length = 258
Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 98/158 (62%), Positives = 118/158 (74%), Gaps = 13/158 (8%)
Query: 1 MWLMKCPALVSRSLK-IPSSDNDDDDSARPVAKVILSIDPLQSNEDSSSSSSSSSTRFTM 59
M LMK P+LV+ SL+ +P D D RP AKVIL++D L + T+F M
Sbjct: 27 MLLMKAPSLVASSLQSLPFPD----DPYRPDAKVILNVDLL--------APEDEETKFVM 74
Query: 60 ELISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGK 119
EL ESGN P+RY++DMSKD IPM+VF ESS+GK+SVEGKIKNKFDMRPH+EN+E+YG+
Sbjct: 75 ELARAESGNMPRRYTLDMSKDFIPMNVFCESSDGKMSVEGKIKNKFDMRPHNENIESYGR 134
Query: 120 LCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMMISTG 157
LCRERTNKYM K+RQIQVIDN G HMRPMPGM+I T
Sbjct: 135 LCRERTNKYMGKNRQIQVIDNARGMHMRPMPGMIIPTA 172
>gi|449452114|ref|XP_004143805.1| PREDICTED: general transcription factor IIF subunit 2-like [Cucumis
sativus]
Length = 277
Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 99/152 (65%), Positives = 118/152 (77%), Gaps = 9/152 (5%)
Query: 1 MWLMKCPALVSRSLKIPSSDNDDDDSARPVAKVILSIDPLQSNEDSSSSSSSSSTRFTME 60
MWL+KCP LV+R+L N D +RPVAKVI+S+DPLQS + SSST FTME
Sbjct: 39 MWLLKCPQLVTRAL-----SNSPDAPSRPVAKVIVSVDPLQS----NDDDDSSSTEFTME 89
Query: 61 LISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKL 120
L ST+SGNA + YS++MS D IPMSVF+ESS GK ++EGKI NKFDM+PH +N+E YGKL
Sbjct: 90 LASTDSGNALRSYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYGKL 149
Query: 121 CRERTNKYMTKSRQIQVIDNDNGSHMRPMPGM 152
CRERT+K MTKSRQIQVID+ G HMRPMPGM
Sbjct: 150 CRERTHKSMTKSRQIQVIDHVTGGHMRPMPGM 181
>gi|255538806|ref|XP_002510468.1| Transcription initiation factor IIF subunit beta, putative [Ricinus
communis]
gi|223551169|gb|EEF52655.1| Transcription initiation factor IIF subunit beta, putative [Ricinus
communis]
Length = 257
Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 89/153 (58%), Positives = 120/153 (78%), Gaps = 13/153 (8%)
Query: 1 MWLMKCPALVSRSLKIPSSDNDDDDSARPVAKVILSIDPLQSNEDSSSSSSSSSTRFTME 60
+WLMKCP +V+RS K +S +D + PVAKV+LS+DPL+S++ S +FTME
Sbjct: 21 VWLMKCPLVVARSWKSHASSSD----SHPVAKVVLSLDPLRSDD---------SLQFTME 67
Query: 61 LISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKL 120
+ TE+GN PK YS++M KD +PMSVF+E++ G++++EGK+++KFDM+PH ENME YG+L
Sbjct: 68 MAGTENGNVPKSYSLNMFKDFVPMSVFSETTQGRVAIEGKVEHKFDMKPHEENMEEYGRL 127
Query: 121 CRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMM 153
CRERTNK M K+RQIQVIDND G HMRPMPGM+
Sbjct: 128 CRERTNKSMIKNRQIQVIDNDRGVHMRPMPGMV 160
>gi|449469921|ref|XP_004152667.1| PREDICTED: transcription initiation factor IIF subunit beta-like
[Cucumis sativus]
gi|449520699|ref|XP_004167371.1| PREDICTED: transcription initiation factor IIF subunit beta-like
[Cucumis sativus]
Length = 260
Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 93/154 (60%), Positives = 119/154 (77%), Gaps = 14/154 (9%)
Query: 1 MWLMKCPALVSRSLKI-PSSDNDDDDSARPVAKVILSIDPLQSNEDSSSSSSSSSTRFTM 59
+WLMKCP LV++S + P SD + P+AKVILS+DPLQS+E SSS +F M
Sbjct: 23 VWLMKCPLLVAKSWQAHPPSD------SLPLAKVILSLDPLQSDE-------SSSLQFKM 69
Query: 60 ELISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGK 119
E+ TE+GN PK +S++M KD +PM VF+E+S GK+S+EGK+++KFDM+PH EN+E YGK
Sbjct: 70 EMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPHSENLEMYGK 129
Query: 120 LCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMM 153
LCRERTNK M K+RQIQVIDND G HMRPMPGM+
Sbjct: 130 LCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMV 163
>gi|334185929|ref|NP_190795.3| Transcription initiation factor IIF, beta subunit [Arabidopsis
thaliana]
gi|332645403|gb|AEE78924.1| Transcription initiation factor IIF, beta subunit [Arabidopsis
thaliana]
Length = 269
Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/160 (62%), Positives = 120/160 (75%), Gaps = 11/160 (6%)
Query: 1 MWLMKCPALVSRSLKIPS---SDNDDDDSARPVAKVILSIDPLQSNEDSSSSSSSSSTRF 57
M LMK P+LV+ SL+ S DD RP AKVIL +DPL ++ED T+F
Sbjct: 32 MLLMKAPSLVASSLQSHSFPDDPYRPDDPYRPDAKVILGVDPL-AHEDEG-------TQF 83
Query: 58 TMELISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMENY 117
MEL +SGN P+RY++DMSKD IPM+VF ESS+GK+SVEGKIKNKFDMRPH+EN+E+Y
Sbjct: 84 VMELARADSGNMPRRYTLDMSKDFIPMNVFCESSDGKMSVEGKIKNKFDMRPHNENIESY 143
Query: 118 GKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMMISTG 157
G+LCRERTNKYM K+RQIQVIDN G HMRPMPGM+I T
Sbjct: 144 GRLCRERTNKYMGKNRQIQVIDNARGMHMRPMPGMIIPTA 183
>gi|317106673|dbj|BAJ53176.1| JHL18I08.10 [Jatropha curcas]
Length = 262
Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 85/153 (55%), Positives = 118/153 (77%), Gaps = 11/153 (7%)
Query: 1 MWLMKCPALVSRSLKIPSSDNDDDDSARPVAKVILSIDPLQSNEDSSSSSSSSSTRFTME 60
+WLMKCP +V++S + +S +D + PVAKV+LS+DPL+S++ S+ +FTME
Sbjct: 24 VWLMKCPLVVAKSWQSHASSSD----SHPVAKVVLSLDPLRSDD-------PSALQFTME 72
Query: 61 LISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKL 120
+ E GN PK YS++M KD +PM VF+E+S G++++EGK+++KFDM+PH EN+E YG+L
Sbjct: 73 MAGNEIGNIPKSYSLNMFKDFVPMCVFSETSQGRVAMEGKVEHKFDMKPHEENIEEYGRL 132
Query: 121 CRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMM 153
CRERTNK M K+RQIQVIDND G HMRPMPGM+
Sbjct: 133 CRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMI 165
>gi|224062059|ref|XP_002300734.1| predicted protein [Populus trichocarpa]
gi|222842460|gb|EEE80007.1| predicted protein [Populus trichocarpa]
Length = 265
Score = 182 bits (461), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 86/153 (56%), Positives = 116/153 (75%), Gaps = 10/153 (6%)
Query: 1 MWLMKCPALVSRSLKIPSSDNDDDDSARPVAKVILSIDPLQSNEDSSSSSSSSSTRFTME 60
+WLMKCP +V++S K S DSA P+AKV+LS+DPLQS++ S+ +FTME
Sbjct: 26 VWLMKCPVVVAKSWK--SHHTSSSDSA-PLAKVVLSLDPLQSDD-------PSAIQFTME 75
Query: 61 LISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKL 120
+ TE+GN PK YS++M KD +PM VF+E+ G++S+EGK+++KFDM+PH EN+E Y KL
Sbjct: 76 MARTETGNVPKSYSLNMFKDFVPMGVFSETPQGRVSMEGKVEHKFDMKPHEENIEEYSKL 135
Query: 121 CRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMM 153
CR+RT K M K+RQI+VIDND G HMRPMPGM+
Sbjct: 136 CRDRTKKSMIKNRQIRVIDNDRGVHMRPMPGMV 168
>gi|224085774|ref|XP_002307692.1| predicted protein [Populus trichocarpa]
gi|118481065|gb|ABK92486.1| unknown [Populus trichocarpa]
gi|222857141|gb|EEE94688.1| predicted protein [Populus trichocarpa]
Length = 261
Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 84/153 (54%), Positives = 116/153 (75%), Gaps = 9/153 (5%)
Query: 1 MWLMKCPALVSRSLKIPSSDNDDDDSARPVAKVILSIDPLQSNEDSSSSSSSSSTRFTME 60
+WLMKCP +V++S K +S + D + P+AKV+LS+DPLQS++ S+ +FTME
Sbjct: 21 VWLMKCPVVVAKSWKTHTSPSSSDSA--PLAKVVLSLDPLQSDD-------PSALQFTME 71
Query: 61 LISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKL 120
+ TE+GN PK YS++M KD +PM VF+E+ GK+++EGK+++KFDM+PH +N+E Y KL
Sbjct: 72 MARTEAGNVPKSYSLNMFKDFVPMCVFSETPQGKVAMEGKVEHKFDMKPHEQNIEEYHKL 131
Query: 121 CRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMM 153
CRERT K M K RQIQVI+ND G HMRPMPGM+
Sbjct: 132 CRERTKKSMVKIRQIQVINNDRGVHMRPMPGMV 164
>gi|242091041|ref|XP_002441353.1| hypothetical protein SORBIDRAFT_09g025080 [Sorghum bicolor]
gi|241946638|gb|EES19783.1| hypothetical protein SORBIDRAFT_09g025080 [Sorghum bicolor]
Length = 267
Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/160 (53%), Positives = 117/160 (73%), Gaps = 3/160 (1%)
Query: 1 MWLMKCPALVSRSLKIPSSDNDDDDSARPV-AKVILSIDPLQSNEDSSSSSSSSSTRFTM 59
+WLMKCP +VSR+ + S+ + D ++A PV AKV+LS+D L+ E + +F M
Sbjct: 17 VWLMKCPPVVSRAWQAASASSSDPNNANPVVAKVVLSLDLLRPEEPPEDRPEEPTLQFKM 76
Query: 60 ELISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGK 119
EL T +GN PK YS++M KD +PM VF+ES+ GK+S EGK+++KFDM PH +N+ NYGK
Sbjct: 77 ELAQTNTGNTPKSYSLNMFKDFVPMCVFSESNQGKLSCEGKVEHKFDMEPHSDNLANYGK 136
Query: 120 LCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGM--MISTG 157
LCRERT KYM KSRQ+QV+DND+G MRPMPG+ +I +G
Sbjct: 137 LCRERTQKYMVKSRQVQVLDNDHGMSMRPMPGLVGLIPSG 176
>gi|359807121|ref|NP_001241605.1| uncharacterized protein LOC100788473 [Glycine max]
gi|255646380|gb|ACU23669.1| unknown [Glycine max]
Length = 262
Score = 172 bits (435), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 83/154 (53%), Positives = 113/154 (73%), Gaps = 13/154 (8%)
Query: 1 MWLMKCPALVSRSLKIPSSDNDDDDSARPVAKVILSIDPLQSNEDSSSSSSSSSTRFTME 60
+WLMKCP +V++S + ++P+AKV+LS+DPL ED S+ +FTME
Sbjct: 24 VWLMKCPLVVAKSWQA-------HPPSQPLAKVVLSLDPLHPEEDDPSA-----VQFTME 71
Query: 61 LISTESGNAPKRYSMDMSKDLIPMSVFAESSNG-KISVEGKIKNKFDMRPHHENMENYGK 119
+ +E+ N PK YS++M KD +PM VF+E+S G K+++EGK+++KFDM+PH EN+E YGK
Sbjct: 72 MAGSEAVNMPKTYSLNMFKDFVPMCVFSETSQGGKVAMEGKVEHKFDMKPHGENIEEYGK 131
Query: 120 LCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMM 153
LCRERTNK M K+RQIQVIDND G MRPMPGM+
Sbjct: 132 LCRERTNKSMIKNRQIQVIDNDRGVLMRPMPGMI 165
>gi|359492177|ref|XP_002279990.2| PREDICTED: transcription initiation factor IIF subunit beta [Vitis
vinifera]
Length = 260
Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 87/153 (56%), Positives = 117/153 (76%), Gaps = 11/153 (7%)
Query: 1 MWLMKCPALVSRSLKIPSSDNDDDDSARPVAKVILSIDPLQSNEDSSSSSSSSSTRFTME 60
+WLMKCP VS+S + SS ++PVAKV+LS+DPL+S ED S+ +FTME
Sbjct: 22 VWLMKCPLAVSKSWQSHSSS-----ESQPVAKVVLSLDPLRS-EDPSALE-----QFTME 70
Query: 61 LISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKL 120
+ T + N PK YS++M KD +PM VF+E++ G++++EGK+++KFDM+PH+EN+E YGKL
Sbjct: 71 MTGTGAPNMPKSYSLNMFKDFVPMCVFSETNQGRVAMEGKVEHKFDMKPHNENIEEYGKL 130
Query: 121 CRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMM 153
CRERTNK M K+RQIQVIDND G HMRPMPGM+
Sbjct: 131 CRERTNKSMIKNRQIQVIDNDRGVHMRPMPGMV 163
>gi|302142579|emb|CBI19782.3| unnamed protein product [Vitis vinifera]
Length = 259
Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/153 (55%), Positives = 115/153 (75%), Gaps = 12/153 (7%)
Query: 1 MWLMKCPALVSRSLKIPSSDNDDDDSARPVAKVILSIDPLQSNEDSSSSSSSSSTRFTME 60
+WLMKCP VS+S + SS ++PVAKV+LS+DPL+S + S+ FTME
Sbjct: 22 VWLMKCPLAVSKSWQSHSSS-----ESQPVAKVVLSLDPLRSED-------PSALEFTME 69
Query: 61 LISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKL 120
+ T + N PK YS++M KD +PM VF+E++ G++++EGK+++KFDM+PH+EN+E YGKL
Sbjct: 70 MTGTGAPNMPKSYSLNMFKDFVPMCVFSETNQGRVAMEGKVEHKFDMKPHNENIEEYGKL 129
Query: 121 CRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMM 153
CRERTNK M K+RQIQVIDND G HMRPMPGM+
Sbjct: 130 CRERTNKSMIKNRQIQVIDNDRGVHMRPMPGMV 162
>gi|356518378|ref|XP_003527856.1| PREDICTED: transcription initiation factor IIF subunit beta-like
[Glycine max]
Length = 262
Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 85/155 (54%), Positives = 113/155 (72%), Gaps = 15/155 (9%)
Query: 1 MWLMKCPALVSRSLKI-PSSDNDDDDSARPVAKVILSIDPLQSNEDSSSSSSSSSTRFTM 59
+WLMKCP +V++S + P S +P+AKV+LS+DPL ED S+ +FTM
Sbjct: 24 VWLMKCPLVVAKSWQTHPPS--------QPLAKVVLSLDPLHPEEDDPSA-----VQFTM 70
Query: 60 ELISTESGNAPKRYSMDMSKDLIPMSVFAESSNG-KISVEGKIKNKFDMRPHHENMENYG 118
E+ TE+ N K YS++M KD +PM VF+E+S G K+++EGK+++KFDM+PH EN+E YG
Sbjct: 71 EMAGTEAVNMSKTYSLNMFKDFVPMCVFSETSQGGKVAMEGKVEHKFDMKPHGENIEEYG 130
Query: 119 KLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMM 153
KLCRERTNK M K+RQIQVIDND G MRPMPGM+
Sbjct: 131 KLCRERTNKSMIKNRQIQVIDNDRGVLMRPMPGMI 165
>gi|224109724|ref|XP_002315290.1| predicted protein [Populus trichocarpa]
gi|222864330|gb|EEF01461.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 88/156 (56%), Positives = 106/156 (67%), Gaps = 25/156 (16%)
Query: 1 MWLMKCPALVSRSLKIPSSD-NDDDDSARPVAKVILSIDPLQSNEDSSSSSSSSSTRFTM 59
+WLMKCP++VSR L+ + D D S+ PVAK FTM
Sbjct: 44 VWLMKCPSIVSRFLRSQEHEVGDGDASSPPVAK------------------------FTM 79
Query: 60 ELISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGK 119
E+ T G+ K YSM+MSKDL+ MSVF+ESS GK+SVEG+I NKFD+RPH EN+ENY K
Sbjct: 80 EMAGTGPGDGLKSYSMEMSKDLVDMSVFSESSQGKLSVEGRILNKFDVRPHSENLENYRK 139
Query: 120 LCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMMIS 155
+CRERT KYM KSRQI+VIDND GSHM PMPGM+IS
Sbjct: 140 ICRERTKKYMVKSRQIKVIDNDTGSHMMPMPGMIIS 175
>gi|388521215|gb|AFK48669.1| unknown [Lotus japonicus]
Length = 258
Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/154 (52%), Positives = 113/154 (73%), Gaps = 12/154 (7%)
Query: 1 MWLMKCPALVSRSLKIPSSDNDDDDSARPVAKVILSIDPLQSNEDSSSSSSSSSTRFTME 60
+WLMKCP +V++S + N ++P++KV+LS+DPL +D S +FTME
Sbjct: 19 VWLMKCPVVVAKSWQ-----NHHPSPSQPLSKVVLSLDPLLPEDDPSH------LQFTME 67
Query: 61 LISTESGNAPKRYSMDMSKDLIPMSVFAESSNG-KISVEGKIKNKFDMRPHHENMENYGK 119
+ +E+ N PK Y+++M KD +PM VF+E+S G K+++EGK+++KFDM+PH EN+E YGK
Sbjct: 68 MTGSEAVNMPKTYALNMFKDFVPMCVFSETSQGGKVAMEGKVEHKFDMKPHGENIEEYGK 127
Query: 120 LCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMM 153
LCRERTNK M K+RQIQVIDND G MRPMPGM+
Sbjct: 128 LCRERTNKSMIKNRQIQVIDNDRGVLMRPMPGMI 161
>gi|219362667|ref|NP_001136767.1| hypothetical protein [Zea mays]
gi|194696976|gb|ACF82572.1| unknown [Zea mays]
gi|413949783|gb|AFW82432.1| hypothetical protein ZEAMMB73_178832 [Zea mays]
gi|413949784|gb|AFW82433.1| hypothetical protein ZEAMMB73_178832 [Zea mays]
Length = 272
Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 84/154 (54%), Positives = 113/154 (73%), Gaps = 5/154 (3%)
Query: 1 MWLMKCPALVSRSLKIPSSDNDDDDSARPV-AKVILSIDPLQSNEDSSSSSSSSSTRFTM 59
+WLMKCP +VSR+ + S+ + D +A PV AKV+LS+D L+ E + +F M
Sbjct: 26 VWLMKCPPVVSRAWQAASASSSDAANANPVVAKVVLSLDLLRQEE----RPEEPTLQFKM 81
Query: 60 ELISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGK 119
EL T +GN PK YS++M KD +PM VF+ES+ GK+S EGK+++KFDM PH +N+ NYGK
Sbjct: 82 ELAQTNTGNTPKSYSLNMFKDFVPMCVFSESNQGKLSCEGKVEHKFDMEPHSDNLANYGK 141
Query: 120 LCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMM 153
LCRERT KYM KSRQ+QV+DND+G MRPMPG++
Sbjct: 142 LCRERTQKYMVKSRQVQVLDNDHGMSMRPMPGIV 175
>gi|217075038|gb|ACJ85879.1| unknown [Medicago truncatula]
gi|388492442|gb|AFK34287.1| unknown [Medicago truncatula]
Length = 262
Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 116/161 (72%), Gaps = 16/161 (9%)
Query: 1 MWLMKCPALVSRSLKIPSSDNDDDDSARPVAKVILSIDPLQSNEDSSSSSSSSSTRFTME 60
+WLMKCP V++S + + ++P++KV+ SIDPL +D + +FTME
Sbjct: 25 VWLMKCPVAVAKSWQ-------NHPPSQPLSKVVFSIDPLLPEDDPAH------LQFTME 71
Query: 61 LISTESGNAPKRYSMDMSKDLIPMSVFAESSNG-KISVEGKIKNKFDMRPHHENMENYGK 119
+ TE+ N PK YS++M KD +PM +F+E+S G K+++EGK+++KFDM+P HENM++YGK
Sbjct: 72 MSGTEAVNMPKTYSLNMFKDFVPMCIFSETSEGDKVAMEGKVEHKFDMKPRHENMDDYGK 131
Query: 120 LCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGM--MISTGF 158
LCRERT K M K+RQ+Q+I +D G+HMRPMPGM ++S+ F
Sbjct: 132 LCRERTKKSMIKNRQVQIIADDRGTHMRPMPGMVGLVSSNF 172
>gi|226506332|ref|NP_001149812.1| LOC100283439 [Zea mays]
gi|195634813|gb|ACG36875.1| ATP binding protein [Zea mays]
gi|219888615|gb|ACL54682.1| unknown [Zea mays]
gi|413945986|gb|AFW78635.1| ATP binding protein [Zea mays]
Length = 269
Score = 162 bits (410), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 85/162 (52%), Positives = 114/162 (70%), Gaps = 5/162 (3%)
Query: 1 MWLMKCPALVSRSLKIPSSDNDDDDSARP---VAKVILSIDPLQSNEDSSSSSSSSSTRF 57
+WLMKCP +VSR+ + S+ D+A VAKV+LS+D L+ E + +F
Sbjct: 17 VWLMKCPPVVSRAWQAASASASSSDAANANPVVAKVVLSLDLLRPEERPEERPEEPTLQF 76
Query: 58 TMELISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMENY 117
MEL T +GN PK YS++M KD +PM VF+ES+ GK+S EGK+++KFDM PH +N+ NY
Sbjct: 77 KMELAQTNTGNTPKSYSLNMFKDFVPMCVFSESNQGKLSCEGKVEHKFDMEPHSDNLANY 136
Query: 118 GKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGM--MISTG 157
GKLCRERT KYM KSRQ+QV+DND+G MRPMPG+ +I +G
Sbjct: 137 GKLCRERTQKYMVKSRQVQVLDNDHGMSMRPMPGLVGLIPSG 178
>gi|357133056|ref|XP_003568144.1| PREDICTED: transcription initiation factor IIF subunit beta-like
isoform 1 [Brachypodium distachyon]
Length = 261
Score = 159 bits (402), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 79/161 (49%), Positives = 113/161 (70%), Gaps = 12/161 (7%)
Query: 1 MWLMKCPALVSRSLKIPSSDNDDDDSARPVAKVILSIDPLQSNEDSSSSSSSSSTRFTME 60
+WLMKCP +VS++ + S+ + D + VAKV+LS+DPL SS+ S +F ME
Sbjct: 17 VWLMKCPPVVSQAWQGASASSGDGNPNPVVAKVVLSLDPL--------SSAEPSIKFKME 68
Query: 61 LISTE--SGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYG 118
+ T + N PK YS++M KD +PM VF+E++ GK+S EGK+++KFDM PH +N+ NY
Sbjct: 69 MAQTRDITCNLPKSYSLNMFKDFVPMCVFSEANQGKLSCEGKVEHKFDMEPHKDNLINYA 128
Query: 119 KLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGM--MISTG 157
KLCRERT K M K+R++QV+DND+G MRP+PGM +I +G
Sbjct: 129 KLCRERTQKSMVKTRKVQVLDNDHGMSMRPLPGMVGLIPSG 169
>gi|326493564|dbj|BAJ85243.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 262
Score = 159 bits (401), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 109/156 (69%), Gaps = 11/156 (7%)
Query: 1 MWLMKCPALVSRSLKIPSSDNDDDDSARPVAKVILSIDPLQSNEDSSSSSSSSSTRFTME 60
+WLMKCP +VS++ + S+ + D + VAKV+LS+DPL SS+ S +F ME
Sbjct: 17 VWLMKCPPVVSQAWQGASASSGDANPNPVVAKVVLSLDPL--------SSAEPSLQFKME 68
Query: 61 LISTESG---NAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMENY 117
+ T N PK YS++M KD +PM VF+E++ GK+S EGK+++KFDM PH +N+ NY
Sbjct: 69 MSQTSVASTCNLPKSYSLNMFKDFVPMCVFSETNQGKLSCEGKVEHKFDMEPHKDNLLNY 128
Query: 118 GKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMM 153
KLCRERT K M K+R++QV+DND+G MRPMPGM+
Sbjct: 129 AKLCRERTQKSMVKTRKVQVLDNDHGMSMRPMPGMV 164
>gi|10045560|emb|CAC07918.1| putative protein [Arabidopsis thaliana]
Length = 376
Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/126 (60%), Positives = 92/126 (73%), Gaps = 18/126 (14%)
Query: 50 SSSSSTRFTMELISTESGNAPKRYSMDMSKDLIPMSVFAESSN----------------- 92
+S + +F MEL +SGN P+RY++DMSKD IPM+VF ESS+
Sbjct: 153 GNSFALQFVMELARADSGNMPRRYTLDMSKDFIPMNVFCESSDDFGSLGEEFSIGMFIYS 212
Query: 93 -GKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPG 151
GK+SVEGKIKNKFDMRPH+EN+E+YG+LCRERTNKYM K+RQIQVIDN G HMRPMPG
Sbjct: 213 PGKMSVEGKIKNKFDMRPHNENIESYGRLCRERTNKYMGKNRQIQVIDNARGMHMRPMPG 272
Query: 152 MMISTG 157
M+I T
Sbjct: 273 MIIPTA 278
>gi|357133058|ref|XP_003568145.1| PREDICTED: transcription initiation factor IIF subunit beta-like
isoform 2 [Brachypodium distachyon]
Length = 279
Score = 155 bits (392), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 114/172 (66%), Gaps = 15/172 (8%)
Query: 1 MWLMKCPALVSRSLKIPSSDNDDDDSARPVAKVILSIDPLQSNEDSSSSSSSSST----- 55
+WLMKCP +VS++ + S+ + D + VAKV+LS+DPL S E S + +
Sbjct: 17 VWLMKCPPVVSQAWQGASASSGDGNPNPVVAKVVLSLDPLSSAEPSIKARTPPRRPRCSP 76
Query: 56 ------RFTMELISTE--SGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDM 107
+F ME+ T + N PK YS++M KD +PM VF+E++ GK+S EGK+++KFDM
Sbjct: 77 PPTCLLQFGMEMAQTRDITCNLPKSYSLNMFKDFVPMCVFSEANQGKLSCEGKVEHKFDM 136
Query: 108 RPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGM--MISTG 157
PH +N+ NY KLCRERT K M K+R++QV+DND+G MRP+PGM +I +G
Sbjct: 137 EPHKDNLINYAKLCRERTQKSMVKTRKVQVLDNDHGMSMRPLPGMVGLIPSG 188
>gi|255585869|ref|XP_002533609.1| ATP binding protein, putative [Ricinus communis]
gi|223526510|gb|EEF28778.1| ATP binding protein, putative [Ricinus communis]
Length = 139
Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 76/142 (53%), Positives = 103/142 (72%), Gaps = 15/142 (10%)
Query: 4 MKCPALVSRSLKIPSSDNDDDDSARPVAKVILSIDPLQSNEDSSSSSSSSSTRFTMELIS 63
MKCP +V+RS K +S +D + PV KV+LS+DPL+S++ S +FTME+
Sbjct: 1 MKCPLVVARSWKSHASSSD----SHPVDKVVLSLDPLRSDD---------SLQFTMEMAG 47
Query: 64 TESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRE 123
TE+GN PK YS++M KD +PMSVF+E++ G++++EGK+++KFDM PH EN E YG LCRE
Sbjct: 48 TENGNVPKSYSLNMFKDFVPMSVFSETTQGRVAMEGKVEHKFDMNPHEENTEEYGSLCRE 107
Query: 124 RTNKYMTKSRQIQVIDNDNGSH 145
RTNK M K+RQI IDND G H
Sbjct: 108 RTNKSMIKNRQI--IDNDRGVH 127
>gi|297842295|ref|XP_002889029.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297334870|gb|EFH65288.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 260
Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 75/156 (48%), Positives = 108/156 (69%), Gaps = 12/156 (7%)
Query: 1 MWLMKCPALVSRSLK--IPSSDNDDDDSARP-VAKVILSIDPLQSNEDSSSSSSSSSTRF 57
+WLMKCP +V+++ + PSS + + P +AKV+L +DPL+ + S F
Sbjct: 16 IWLMKCPVVVAKTWEKLAPSSSSYSSSDSLPNLAKVVLDVDPLRPD---------YSPEF 66
Query: 58 TMELISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMENY 117
TM++++ E GN PK Y+++M KD +PM F+E++ +VEG + +KFDM+PH EN+E Y
Sbjct: 67 TMQMVAAEYGNMPKCYALNMFKDFVPMEAFSETNLVNTAVEGNVDHKFDMKPHGENIEEY 126
Query: 118 GKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMM 153
+LCRERT+K M K+RQIQVIDND G HMRPMPGM+
Sbjct: 127 ARLCRERTSKAMVKNRQIQVIDNDRGVHMRPMPGML 162
>gi|115464811|ref|NP_001056005.1| Os05g0509900 [Oryza sativa Japonica Group]
gi|48475207|gb|AAT44276.1| putative transcription initiation factor [Oryza sativa Japonica
Group]
gi|113579556|dbj|BAF17919.1| Os05g0509900 [Oryza sativa Japonica Group]
gi|215706385|dbj|BAG93241.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222632183|gb|EEE64315.1| hypothetical protein OsJ_19152 [Oryza sativa Japonica Group]
Length = 259
Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/155 (49%), Positives = 109/155 (70%), Gaps = 11/155 (7%)
Query: 1 MWLMKCPALVSRSLK--IPSSDNDDDDSARPVAKVILSIDPLQSNEDSSSSSSSSSTRFT 58
+WLMKCP +VS + + + SSD + VAKV+LS+D L+S E S +F
Sbjct: 17 VWLMKCPPVVSHAWQGAVSSSDAAGSNPNPVVAKVVLSLDLLRSEE--------PSLQFK 68
Query: 59 MELISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYG 118
ME+ T +GN PK YS++MSKD +PM VF+ES+ GK+S EGK+++KFDM+PH +N+ NYG
Sbjct: 69 MEMAQTNTGNTPKSYSLNMSKDFVPMCVFSESNQGKLSCEGKVEHKFDMKPHSDNLVNYG 128
Query: 119 KLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMM 153
KLCRERT K M K+R++QVI+ D+ + P+PGM+
Sbjct: 129 KLCRERTQKSMIKTRKVQVIE-DHRMSLIPLPGMV 162
>gi|357136669|ref|XP_003569926.1| PREDICTED: transcription initiation factor IIF subunit beta-like
[Brachypodium distachyon]
Length = 261
Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 106/154 (68%), Gaps = 14/154 (9%)
Query: 1 MWLMKCPALVSRSLKIPSSDNDDDDSARP-----VAKVILSIDPLQSNEDSSSSSSSSST 55
+WLMKCP +VSR+ + +S +P VAKVILS+DPL S++D +
Sbjct: 17 VWLMKCPTIVSRAWQ-EASAASAAGGPKPNPNPVVAKVILSLDPLSSDDDPA-------- 67
Query: 56 RFTMELISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENME 115
+F ME+ T++GN PK YS++M KD +PMSVF+ES+ GK++ EGK++ KFDM PH EN+
Sbjct: 68 QFKMEMAQTDNGNKPKSYSLNMFKDFVPMSVFSESNQGKLACEGKVEYKFDMEPHRENLS 127
Query: 116 NYGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPM 149
+Y KLCRERT K M K+R++ V++ DNG MRP+
Sbjct: 128 DYAKLCRERTEKSMIKTRKVHVLEKDNGMGMRPL 161
>gi|449521623|ref|XP_004167829.1| PREDICTED: general transcription factor IIF subunit 2-like [Cucumis
sativus]
Length = 190
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 80/94 (85%)
Query: 59 MELISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYG 118
MEL ST+SGNA + YS++MS D IPMSVF+ESS GK ++EGKI NKFDM+PH +N+E YG
Sbjct: 1 MELASTDSGNALRSYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYG 60
Query: 119 KLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGM 152
KLCRERT+K MTKSRQIQVID+ G HMRPMPGM
Sbjct: 61 KLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGM 94
>gi|56785216|dbj|BAD82068.1| putative transcription initiation factor IIF beta subunit [Oryza
sativa Japonica Group]
Length = 277
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 112/175 (64%), Gaps = 26/175 (14%)
Query: 1 MWLMKCPALVSRSLK----------------IPSSDNDDDDSARPVAKVILSIDPLQSNE 44
+WLMKCP +VSR+ + ++ N + + VAKVI+S+DPL+S +
Sbjct: 17 VWLMKCPTVVSRAWQEAATAAASSSSSSDAAAGANSNSNANPNPVVAKVIVSLDPLRSED 76
Query: 45 DSSSSSSSSSTRFTMELISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNK 104
+F ME+ T +GN PK YS++M KD +PM VF+ES+ GK+S EGK+ +K
Sbjct: 77 --------QQLQFKMEMAQTGNGNTPKSYSLNMFKDFVPMCVFSESNQGKLSCEGKVGHK 128
Query: 105 FDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGM--MISTG 157
FDM PH +N+ NYGKLCRERT K M K+R++ V+ NDNG MRP+PG+ ++S+G
Sbjct: 129 FDMEPHSDNLVNYGKLCRERTQKSMIKNRKLMVLANDNGMSMRPLPGLVGLMSSG 183
>gi|413945985|gb|AFW78634.1| hypothetical protein ZEAMMB73_145723 [Zea mays]
Length = 200
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 64/104 (61%), Positives = 83/104 (79%), Gaps = 2/104 (1%)
Query: 56 RFTMELISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENME 115
+F MEL T +GN PK YS++M KD +PM VF+ES+ GK+S EGK+++KFDM PH +N+
Sbjct: 6 QFKMELAQTNTGNTPKSYSLNMFKDFVPMCVFSESNQGKLSCEGKVEHKFDMEPHSDNLA 65
Query: 116 NYGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGM--MISTG 157
NYGKLCRERT KYM KSRQ+QV+DND+G MRPMPG+ +I +G
Sbjct: 66 NYGKLCRERTQKYMVKSRQVQVLDNDHGMSMRPMPGLVGLIPSG 109
>gi|218197080|gb|EEC79507.1| hypothetical protein OsI_20575 [Oryza sativa Indica Group]
Length = 259
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 111/161 (68%), Gaps = 13/161 (8%)
Query: 1 MWLMKCPALVSRSLKIPSSDNDDDD-SARPV-AKVILSIDPLQSNEDSSSSSSSSSTRFT 58
+WLMKCP +VS + + S + + PV AKV+LS+D L+S E S +F
Sbjct: 17 VWLMKCPPVVSHAWQGAVSSSSAAGSNPNPVVAKVVLSLDLLRSEE--------PSLQFK 68
Query: 59 MELISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYG 118
ME+ T +GN PK YS++MSKD +PM VF+ES+ GK+S EGK+++KFDM+PH +N+ NYG
Sbjct: 69 MEMAQTNTGNTPKSYSLNMSKDFVPMCVFSESNQGKLSCEGKVEHKFDMKPHSDNLVNYG 128
Query: 119 KLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGM--MISTG 157
KLCRERT K M K+R++QVI+ D+ + P+PGM +I +G
Sbjct: 129 KLCRERTQKSMIKTRKVQVIE-DHRMSLIPLPGMVGLIPSG 168
>gi|294464268|gb|ADE77647.1| unknown [Picea sitchensis]
Length = 293
Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 114/182 (62%), Gaps = 36/182 (19%)
Query: 1 MWLMKCPALVSRSLKIPSSDNDDDDSARPVAKVILSIDPLQSN--------EDSSSSSSS 52
+WLMKCP ++ ++ K S DS +P+AK+ +S+DP +++ ED ++ S++
Sbjct: 21 VWLMKCPLVIGQAWKEIS------DSGQPLAKITVSVDPCKADDQPIEAKVEDPTAPSAT 74
Query: 53 S---------------------STRFTMELISTESGNAPKRYSMDMSKDLIPMSVFAESS 91
+ F ME+ + S APK YS++MS ++IPM +F+E+S
Sbjct: 75 RRKVERQQMSSSRSQTQSTHRIKSEFMMEVAANGSVTAPKSYSLNMSTEIIPMYIFSETS 134
Query: 92 NGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPG 151
GK++V+GK+++KFDM+PH +N+++Y +LCRERTNK K+RQ+QVIDND G + PM G
Sbjct: 135 EGKVAVDGKVEHKFDMKPHTKNIDDYRRLCRERTNKSNFKARQVQVIDNDRGGY-NPMQG 193
Query: 152 MM 153
MM
Sbjct: 194 MM 195
>gi|15222264|ref|NP_177683.1| transcription initiation factor TFIIF beta subunit [Arabidopsis
thaliana]
gi|9369371|gb|AAF87120.1|AC006434_16 F10A5.27 [Arabidopsis thaliana]
gi|11692842|gb|AAG40024.1|AF324673_1 At1g75700 [Arabidopsis thaliana]
gi|11935195|gb|AAG42013.1|AF327423_1 putative transcription initiation factor [Arabidopsis thaliana]
gi|12642908|gb|AAK00396.1|AF339714_1 putative transcription initiation factor [Arabidopsis thaliana]
gi|39545896|gb|AAR28011.1| TFIIF-beta 2 [Arabidopsis thaliana]
gi|110741044|dbj|BAE98616.1| putative transcription initiation factor [Arabidopsis thaliana]
gi|332197607|gb|AEE35728.1| transcription initiation factor TFIIF beta subunit [Arabidopsis
thaliana]
Length = 261
Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 100/157 (63%), Gaps = 13/157 (8%)
Query: 1 MWLMKCPALVSRS---LKIPSSDNDDDDSARP-VAKVILSIDPLQSNEDSSSSSSSSSTR 56
+WLMKCP +V ++ + SS + + P +AK++ +DPL+ + S
Sbjct: 16 IWLMKCPVVVDKAWHKIAASSSSSFASSDSPPDMAKIVREVDPLRDD---------SPPE 66
Query: 57 FTMELISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMEN 116
F M ++ E GN PK Y+++M D +PM F++ + G + EGK+ +KFDM+P+ E +E
Sbjct: 67 FKMYMVGAEYGNMPKCYALNMFTDFVPMGGFSDVNQGCAAAEGKVDHKFDMKPYGETIEE 126
Query: 117 YGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMM 153
Y +LCRERT+K M K+RQIQVIDND G HMRPMPGM+
Sbjct: 127 YARLCRERTSKAMVKNRQIQVIDNDRGVHMRPMPGML 163
>gi|125527873|gb|EAY75987.1| hypothetical protein OsI_03910 [Oryza sativa Indica Group]
gi|222619327|gb|EEE55459.1| hypothetical protein OsJ_03621 [Oryza sativa Japonica Group]
Length = 261
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 105/159 (66%), Gaps = 10/159 (6%)
Query: 1 MWLMKCPALVSRSLKIPSSDNDDDDSARPVAKVILSIDPLQSNEDSSSSSSSSSTRFTME 60
+WLMKCP +VSR+ + + + + S +N +S+++ + +F ME
Sbjct: 17 VWLMKCPTVVSRAWQ--------EAATAAASSSSSSDAAAGANSNSNANPNPVVAKFKME 68
Query: 61 LISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKL 120
+ T +GN PK YS++M KD +PM VF+ES+ GK+S EGK+ +KFDM PH +N+ NYGKL
Sbjct: 69 MAQTGNGNTPKSYSLNMFKDFVPMCVFSESNQGKLSCEGKVGHKFDMEPHSDNLVNYGKL 128
Query: 121 CRERTNKYMTKSRQIQVIDNDNGSHMRPMPGM--MISTG 157
CRERT K M K+R++ V+ NDNG MRP+PG+ ++S+G
Sbjct: 129 CRERTQKSMIKNRKLMVLANDNGMSMRPLPGLVGLMSSG 167
>gi|168039739|ref|XP_001772354.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676341|gb|EDQ62825.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 90/152 (59%), Gaps = 17/152 (11%)
Query: 1 MWLMKCPALVSRS-LKIPSSDNDDDDSARPVAKVILSIDPLQSNEDSSSSSSSSSTRFTM 59
+WL+K P LV LK D A +AKV +S+DPL N DS F M
Sbjct: 32 VWLLKVPPLVGHQWLK-------QQDGAPVLAKVTMSMDPLNPNSDS--------VEFMM 76
Query: 60 ELISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHH-ENMENYG 118
L + K Y+++++KDL+PM +F+E++ GK+ VEGK+++KFDM+P + N + Y
Sbjct: 77 TLPEKDLVAPHKSYNLNVTKDLVPMHIFSETTQGKLKVEGKVEHKFDMKPSNIGNNDEYR 136
Query: 119 KLCRERTNKYMTKSRQIQVIDNDNGSHMRPMP 150
KLCR+R NK M K+R QV+ ND G MRP P
Sbjct: 137 KLCRDRLNKSMVKTRTTQVLSNDRGGFMRPPP 168
>gi|302795362|ref|XP_002979444.1| hypothetical protein SELMODRAFT_111128 [Selaginella moellendorffii]
gi|300152692|gb|EFJ19333.1| hypothetical protein SELMODRAFT_111128 [Selaginella moellendorffii]
Length = 270
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 96/169 (56%), Gaps = 30/169 (17%)
Query: 1 MWLMKCPALVSRSLKIPSSDNDDDDSARPVA-----------KVILSIDPLQSNEDSSSS 49
+WL+K PA+V+ + N D S + VA KV + DPL + +++
Sbjct: 20 VWLLKLPAIVATAW------NAQDSSGKSVAAGAGPADPTLAKVTCTFDPLNPDPEAA-- 71
Query: 50 SSSSSTRFTMELISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRP 109
FTMEL + A YS+++ KD++P +F+++ G+++VEGK++ KFD++P
Sbjct: 72 -----LEFTMELSGPDDIKA---YSLNLQKDVVPTHIFSDTQ-GRLAVEGKVERKFDIKP 122
Query: 110 HHENMENYGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPM--PGMMIST 156
+ + E Y +LCRER K+ K+R IQV+ +D G+ MRP P +M+ +
Sbjct: 123 NSKAREEYRQLCRERDRKFNMKTRTIQVLKDDRGNLMRPALPPTIMLQS 171
>gi|302792232|ref|XP_002977882.1| transcription factor [Selaginella moellendorffii]
gi|300154585|gb|EFJ21220.1| transcription factor [Selaginella moellendorffii]
Length = 262
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 96/169 (56%), Gaps = 30/169 (17%)
Query: 1 MWLMKCPALVSRSLKIPSSDNDDDDSARPVA-----------KVILSIDPLQSNEDSSSS 49
+WL+K PA+V+ + N D S + VA KV + DPL + +++
Sbjct: 20 VWLLKLPAIVATAW------NAQDSSGKSVAAGAGPADPTLAKVTCTFDPLNPDPEAA-- 71
Query: 50 SSSSSTRFTMELISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRP 109
FTMEL + A YS+++ KD++P +F+++ G+++VEGK++ KFD++P
Sbjct: 72 -----LEFTMELSGPDDIKA---YSLNLQKDVVPTHIFSDTQ-GRLAVEGKVERKFDIKP 122
Query: 110 HHENMENYGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPM--PGMMIST 156
+ + E Y +LCRER K+ K+R IQV+ +D G+ MRP P +M+ +
Sbjct: 123 NSKAREEYRQLCRERDRKFNMKTRTIQVLKDDRGNLMRPALPPTIMLQS 171
>gi|168039837|ref|XP_001772403.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676390|gb|EDQ62874.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 262
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 89/177 (50%), Gaps = 42/177 (23%)
Query: 1 MWLMKCPALVSRS-LKIPSSDNDDDDSARPVAKVILSIDPLQSNEDSSSSSSSSSTRFTM 59
+WL+K P LV LK D A +AKV +S+DPL N DS F M
Sbjct: 32 VWLLKVPPLVGHQWLK-------QQDGAPVLAKVTMSMDPLNPNSDS--------VEFMM 76
Query: 60 ELISTESGNAPKRYSMDMSKDLIPMSVFAESS-------------------------NGK 94
L + K Y+++++KDL+PM +F+E++ K
Sbjct: 77 TLPEKDLVAPHKSYNLNVTKDLVPMHIFSETTQEDEEAACGGVRIGKADVWKQTQACGWK 136
Query: 95 ISVEGKIKNKFDMRPHH-ENMENYGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMP 150
+ VEGK+++KFDM+P + N + Y KLCR+R NK M K+R QV+ ND G MRP P
Sbjct: 137 LKVEGKVEHKFDMKPSNIGNNDEYRKLCRDRLNKSMVKTRTTQVLSNDRGGFMRPPP 193
>gi|297720443|ref|NP_001172583.1| Os01g0772200 [Oryza sativa Japonica Group]
gi|255673728|dbj|BAH91313.1| Os01g0772200 [Oryza sativa Japonica Group]
Length = 138
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 74/126 (58%), Gaps = 24/126 (19%)
Query: 1 MWLMKCPALVSRSLK----------------IPSSDNDDDDSARPVAKVILSIDPLQSNE 44
+WLMKCP +VSR+ + ++ N + + VAKVI+S+DPL+S +
Sbjct: 17 VWLMKCPTVVSRAWQEAATAAASSSSSSDAAAGANSNSNANPNPVVAKVIVSLDPLRSED 76
Query: 45 DSSSSSSSSSTRFTMELISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNK 104
+F ME+ T +GN PK YS++M KD +PM VF+ES+ GK+S EGK+ +K
Sbjct: 77 --------QQLQFKMEMAQTGNGNTPKSYSLNMFKDFVPMCVFSESNQGKLSCEGKVGHK 128
Query: 105 FDMRPH 110
FDM PH
Sbjct: 129 FDMEPH 134
>gi|297819942|ref|XP_002877854.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297323692|gb|EFH54113.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 130
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 38/63 (60%), Gaps = 19/63 (30%)
Query: 95 ISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMMI 154
+SVEGKIKNK+DMRPH+EN+E+Y VID+ G HMRPMP M+I
Sbjct: 1 MSVEGKIKNKYDMRPHNENIESY-------------------VIDDARGMHMRPMPEMII 41
Query: 155 STG 157
T
Sbjct: 42 PTA 44
>gi|308811420|ref|XP_003083018.1| putative transcription initiation factor (ISS) [Ostreococcus tauri]
gi|116054896|emb|CAL56973.1| putative transcription initiation factor (ISS) [Ostreococcus tauri]
Length = 347
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 40/176 (22%)
Query: 2 WLMKCPALVSRSL--------KIPSSDNDDDDSARPVAKVILSIDPLQSNEDSSSSSSSS 53
W++K P VSR L ++PS ++D D +D Q+++ + +
Sbjct: 111 WIIKVPKFVSRVLHDAAAANIQMPSMEDDMD------------VDMTQTDK------TKA 152
Query: 54 STRFTMELISTESGNAPKRYSMDMSKDLIPMSVFAESSNG-------KISVEGKIKNKFD 106
T+ MEL E+ + PK+Y + +PM VF++ G I++E +I K D
Sbjct: 153 MTQGVMELTGKEAASVPKKYILANQATDMPMHVFSDVREGLKLGGHQDITLEARIDLKLD 212
Query: 107 MRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNGSHMR--PMPGMMISTGFTV 160
MRP + +Y ++ +ER + TK+R Q + S MR P+P FT
Sbjct: 213 MRPSSIDDVDYNRVSKERMEQAQTKTRVTQ-----SSSEMRFAPLPKRANLVRFTA 263
>gi|412985430|emb|CCO18876.1| predicted protein [Bathycoccus prasinos]
Length = 376
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 31/175 (17%)
Query: 2 WLMKCPALVSRSLKIPS-----SDNDDDDSARPV----------AKVILSIDPLQSNEDS 46
WL+K P V R+ K S +DN++D+ + KV + IDP D
Sbjct: 116 WLVKVPNFVDRAWKSFSDRRSKADNENDEDGMDIDAELNDNDELGKVRVVIDPF----DK 171
Query: 47 SSSSSSSSTRFTMELISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKIS---------- 96
+ + + T + E P +Y M + + + VF+E+ G +
Sbjct: 172 ENKEAFAVT-LNAAVNEDEEHEIPVKYIMTENIEAPEIHVFSETREGTAAATSAMDVNEF 230
Query: 97 -VEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMP 150
VE K+ K DMRP + Y ++ + R K +KSR +Q + + + + P+P
Sbjct: 231 IVEAKVHKKLDMRPKDASDAAYARVSKNRLEKAQSKSRFVQSVVGADAARIAPLP 285
>gi|145357023|ref|XP_001422722.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582965|gb|ABP01039.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 241
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 20/158 (12%)
Query: 2 WLMKCPALVSRSLKIPSSDNDDDDSARPVAKVILSIDPLQSNEDSSS-SSSSSSTRFTME 60
WL+K P VSR ++ +++ +D ED + + T ME
Sbjct: 11 WLVKVPKFVSRVF------HEAAAASKQAMADDDDMDTDTKEEDEPAIGTVRHMTHAIME 64
Query: 61 LISTESGNAPKRYSMDMSKDLIPMSVFAE------SSNGKISVEGKIKNKFDMRPHHENM 114
L E+ PK+Y + +PM VF++ S I++E K+ K DMRP +
Sbjct: 65 LTGKEANGVPKQYILANQPSDMPMRVFSDVREGTTSGQADITLEAKVDLKLDMRPTSIDD 124
Query: 115 ENYGKLCRERTNKYMTKSRQIQVIDNDNGSHMR--PMP 150
+Y ++ ++R + TK+R Q + S MR P+P
Sbjct: 125 VDYHRVSKDRMIQAQTKTRVTQ-----SSSEMRFAPLP 157
>gi|348681790|gb|EGZ21606.1| hypothetical protein PHYSODRAFT_354403 [Phytophthora sojae]
Length = 249
Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 63 STESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCR 122
ST + P Y +++S+ + + VF+ +G++++EG +KN + + Y K+C+
Sbjct: 66 STLEDDIPTEYRIEISETPLKLKVFSLDGSGRMAIEGTVKNSCTVMAQRND--QYSKMCK 123
Query: 123 ERTNKYMTKSRQIQVIDN 140
+R K M K+R +Q +++
Sbjct: 124 QRLIKSMVKTRIVQPLED 141
>gi|301107059|ref|XP_002902612.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262098486|gb|EEY56538.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 243
Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 63 STESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCR 122
ST + P Y +++S+ + + VF+ +G++++EG +KN + + Y K+C+
Sbjct: 60 STLEDDIPTEYRVEISETPLKLKVFSLDGSGRMAIEGTVKNSCTIMAQRND--QYSKMCK 117
Query: 123 ERTNKYMTKSRQIQVIDN 140
+R K M K+R +Q +++
Sbjct: 118 QRLIKSMVKTRIVQPLED 135
>gi|260800648|ref|XP_002595210.1| hypothetical protein BRAFLDRAFT_100378 [Branchiostoma floridae]
gi|229280454|gb|EEN51222.1| hypothetical protein BRAFLDRAFT_100378 [Branchiostoma floridae]
Length = 249
Score = 42.4 bits (98), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 34/160 (21%)
Query: 1 MWLMKCPALVSR-----------SLKIPSSDNDDDDSARPVAKVILSIDPLQSNEDSSSS 49
+WL+K P +S +LKI N + +P L D Q ++ +S
Sbjct: 17 LWLVKVPKYMSNKWMTVEDGEVGTLKI----NRRPGAPKPEVIFSLKEDLAQRDDGKGNS 72
Query: 50 SSSSSTRFTMELISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRP 109
+ +F + SG A + PM VF+++S G +++EGK+ ++ D RP
Sbjct: 73 EAPREHKFVL------SGTAGQ-----------PMGVFSQTSTGALALEGKVAHRVDCRP 115
Query: 110 HHENMENYGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPM 149
E+Y KL R + MT R +D ++ +P+
Sbjct: 116 --VGGEHYMKLKRLQVLDAMTPMRTTMALDRAVTNNYKPV 153
>gi|353526286|sp|Q54KT7.2|T2FB_DICDI RecName: Full=General transcription factor IIF subunit 2; AltName:
Full=ATP-dependent helicase gtf2f2; AltName:
Full=Transcription initiation factor IIF subunit beta;
Short=TFIIF-beta
Length = 241
Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 83 PMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVID 139
P+ +F+E +G +++EG I + D++ E+ + Y L + R KY TK+R QVID
Sbjct: 79 PLKIFSEDKDGALALEGNIGLRCDIKIDVESPQ-YRDLMKSRHTKYNTKTRMTQVID 134
>gi|66807241|ref|XP_637343.1| TFIIF subunit [Dictyostelium discoideum AX4]
gi|60465764|gb|EAL63840.1| TFIIF subunit [Dictyostelium discoideum AX4]
Length = 248
Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 83 PMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVID 139
P+ +F+E +G +++EG I + D++ E+ + Y L + R KY TK+R QVID
Sbjct: 86 PLKIFSEDKDGALALEGNIGLRCDIKIDVESPQ-YRDLMKSRHTKYNTKTRMTQVID 141
>gi|384254108|gb|EIE27582.1| winged helix DNA-binding domain-containing protein [Coccomyxa
subellipsoidea C-169]
Length = 189
Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 76 DMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMEN-----YGKLCRERTNKYMT 130
+ + + P VFA+ G++S EG++K KFD+ + Y ++ R+R+ K
Sbjct: 9 EQTDNFAPTLVFADLQ-GRLSAEGRVKRKFDLVMKSSGDLDALDPAYRQINRDRSAKAAA 67
Query: 131 KSRQIQVIDNDNGSHMRPMPGMMISTG 157
K+R +QV+ + MRP +S G
Sbjct: 68 KTRTMQVLSEAPDTQMRPGAVQRVSFG 94
>gi|325179553|emb|CCA13951.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 330
Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 68 NAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNK 127
P Y +++ + + VF++ +G++++EG + N + + Y K+C++R +
Sbjct: 116 EVPTEYRIEIGPTPLKLKVFSQDGSGRMAIEGTVSNSCTIIAQRND--QYSKMCKQRLLR 173
Query: 128 YMTKSRQIQVIDN 140
M K+R +Q +++
Sbjct: 174 SMVKTRIVQPLED 186
>gi|325179554|emb|CCA13952.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 329
Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 68 NAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNK 127
P Y +++ + + VF++ +G++++EG + N + + Y K+C++R +
Sbjct: 115 EVPTEYRIEIGPTPLKLKVFSQDGSGRMAIEGTVSNSCTIIAQRND--QYSKMCKQRLLR 172
Query: 128 YMTKSRQIQVIDN 140
M K+R +Q +++
Sbjct: 173 SMVKTRIVQPLED 185
>gi|330806103|ref|XP_003291013.1| hypothetical protein DICPUDRAFT_38380 [Dictyostelium purpureum]
gi|325078810|gb|EGC32441.1| hypothetical protein DICPUDRAFT_38380 [Dictyostelium purpureum]
Length = 256
Score = 39.3 bits (90), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 68/149 (45%), Gaps = 34/149 (22%)
Query: 1 MWLMKCPALVSRSL---------KIPSSDNDDDDSARPVAKVILSIDPLQSNEDSSSSSS 51
+WL+K P +S KI D+ + + K+ LSI L N + +S
Sbjct: 21 VWLIKVPKFLSEHWNGIGKGEIGKIHIKGGDNVNFYFYIIKITLSISGLSENNEFQLMTS 80
Query: 52 SSSTRFTMELISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEGKIKNKFDMRPHH 111
+++ + T+ P+ +F+E S+G +++EG I + D++
Sbjct: 81 ANN-------LETQ-----------------PLKIFSEDSDGSLALEGNIGLRCDIKIDV 116
Query: 112 ENMENYGKLCRERTNKYMTKSRQIQVIDN 140
++ +Y +L + R KY TK+R +VID+
Sbjct: 117 QS-SSYRELMKTRHTKYNTKTRMTKVIDD 144
>gi|328874575|gb|EGG22940.1| TFIIF subunit [Dictyostelium fasciculatum]
Length = 243
Score = 39.3 bits (90), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 83 PMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDN 142
P+ +F+E +++EG + K D+R + ++ + Y +LCR R+ Y TK+RQ + ++
Sbjct: 80 PLKIFSEDKENALALEGSVGLKCDIRMNVDS-KGYRELCRGRSESYNTKTRQSKTLEGHQ 138
Query: 143 GS 144
S
Sbjct: 139 TS 140
>gi|452846907|gb|EME48839.1| hypothetical protein DOTSEDRAFT_67783 [Dothistroma septosporum
NZE10]
Length = 1120
Score = 37.4 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 11/75 (14%)
Query: 13 SLKIPSSDNDDDDSAR--PVAKVILSIDPLQSNE---------DSSSSSSSSSTRFTMEL 61
SL +PS ++D+DDSA P ++S++ S E DS + S ++
Sbjct: 119 SLPVPSGNDDEDDSANVSPAPSTVMSVEKTTSTEEAKDEDMKDDSDKDADGESDTGSLSD 178
Query: 62 ISTESGNAPKRYSMD 76
TE+ NAP + SM+
Sbjct: 179 PDTEASNAPSQRSMN 193
>gi|328767698|gb|EGF77747.1| hypothetical protein BATDEDRAFT_20656 [Batrachochytrium
dendrobatidis JAM81]
Length = 299
Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Query: 66 SGNAPKRYSMDMSKDLIPMS--VFAESSNGK-ISVEGKIKNKFDMRP---HHENMENYGK 119
S + PK Y++ + +L P + VF E+S G+ + + G ++++ + P + +Y +
Sbjct: 96 SADLPKNYNLKFT-NLAPKNEYVFTETSQGRAVGIAGIVQHEATVSPMVTDATHSAHYQR 154
Query: 120 LCRERTNKYMTKSRQIQVIDNDNGSHMRPM 149
+ ++RT T SR +++ID + H R M
Sbjct: 155 IMKKRTTTAATPSRVVKMIDENKTEHRRLM 184
>gi|395219170|ref|ZP_10402428.1| TonB-dependent receptor [Pontibacter sp. BAB1700]
gi|394453987|gb|EJF08760.1| TonB-dependent receptor [Pontibacter sp. BAB1700]
Length = 668
Score = 36.6 bits (83), Expect = 5.9, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 39/84 (46%)
Query: 40 LQSNEDSSSSSSSSSTRFTMELISTESGNAPKRYSMDMSKDLIPMSVFAESSNGKISVEG 99
L N ++++ S + TR+ + + G +P +YS D S L P + N ++SV G
Sbjct: 368 LPGNWIATAALSLNDTRYEITRLHQAPGGSPYQYSRDFSAVLSPRVALLKRLNEQVSVHG 427
Query: 100 KIKNKFDMRPHHENMENYGKLCRE 123
+ F E + + G L +E
Sbjct: 428 SVSAGFSPPSEEELLTSDGALNQE 451
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.130 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,892,560,047
Number of Sequences: 23463169
Number of extensions: 103824064
Number of successful extensions: 550922
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 550125
Number of HSP's gapped (non-prelim): 541
length of query: 194
length of database: 8,064,228,071
effective HSP length: 135
effective length of query: 59
effective length of database: 9,191,667,552
effective search space: 542308385568
effective search space used: 542308385568
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 72 (32.3 bits)