BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029410
(194 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54KT7|T2FB_DICDI General transcription factor IIF subunit 2 OS=Dictyostelium
discoideum GN=gtf2f2 PE=3 SV=2
Length = 241
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 83 PMSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVID 139
P+ +F+E +G +++EG I + D++ E+ + Y L + R KY TK+R QVID
Sbjct: 79 PLKIFSEDKDGALALEGNIGLRCDIKIDVESPQ-YRDLMKSRHTKYNTKTRMTQVID 134
>sp|Q6AD57|SUCC_LEIXX Succinyl-CoA ligase [ADP-forming] subunit beta OS=Leifsonia xyli
subsp. xyli (strain CTCB07) GN=sucC PE=3 SV=1
Length = 387
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 12/131 (9%)
Query: 28 RPVAKVILSIDPLQSNEDSSSSSSSSSTRFTMELISTESGNAPKRYSMDMSKD--LIPMS 85
+P A + +DP+ + + ++ + + F EL+S + K Y + +D L+ ++
Sbjct: 132 KPEALARIGVDPIAGVDTTKATEIARAAGFPEELVSKVADVFVKLYDVYKGEDATLVEVN 191
Query: 86 VFAESSNGK-ISVEGKI---KNKFDMRPHHENMENYGKL------CRERTNKYMTKSRQI 135
+ G+ I+++GK+ +N P HE +E+ +E Y+ Q+
Sbjct: 192 PLVLTEEGEVIALDGKVTLDENAGFRHPEHEELEDKAAADPLEAKAKEADLNYVKLDGQV 251
Query: 136 QVIDNDNGSHM 146
+I N G M
Sbjct: 252 GIIGNGAGLVM 262
>sp|Q96N64|PWP2A_HUMAN PWWP domain-containing protein 2A OS=Homo sapiens GN=PWWP2A PE=1
SV=2
Length = 755
Score = 31.2 bits (69), Expect = 5.1, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 15 KIPSSDNDDDDSARPVAKVILSIDPLQSNEDSSSSSSSSSTRFTMELISTESGNAPKR 72
K+ S N D AR V K+ + NE S+S ++ S FT + SG+ P R
Sbjct: 416 KVLQSKNMDHAKAREVLKIAKEKAQKKQNETSTSKNAHSKVHFTRRYQNPSSGSLPPR 473
>sp|Q5SXI5|ZN496_MOUSE Zinc finger protein 496 OS=Mus musculus GN=Znf496 PE=1 SV=1
Length = 585
Score = 30.4 bits (67), Expect = 7.2, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 11/104 (10%)
Query: 28 RPVAKVILSIDPLQSNEDSSSSSSSSSTRFTMELISTESGNAPKRYSMDMSKDLIP---- 83
+P +V+LS P + D + SS T+E++ + SG+ ++S +++L
Sbjct: 322 QPCPQVVLSQSPCPAGGDPPALKSSLDQEVTIEIVLSSSGDEDSQHSPYCTEELRSPPED 381
Query: 84 -MSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCRERTN 126
SV A SN E + K + P N GK+ R R N
Sbjct: 382 LHSVPAHQSNASAEGEVQTSQKSYVCP------NCGKIFRWRVN 419
>sp|Q5ZKR7|ACBG2_CHICK Long-chain-fatty-acid--CoA ligase ACSBG2 OS=Gallus gallus GN=ACSBG2
PE=2 SV=2
Length = 763
Score = 30.4 bits (67), Expect = 7.5, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 38/80 (47%)
Query: 27 ARPVAKVILSIDPLQSNEDSSSSSSSSSTRFTMELISTESGNAPKRYSMDMSKDLIPMSV 86
A PV LS+D S+E S + +S+ T+E+ S + + PK M+K + S
Sbjct: 12 ADPVPMAYLSVDAQGSSEVSLDDITINSSAGTVEVCSMKPADDPKTERSQMNKTGLASSS 71
Query: 87 FAESSNGKISVEGKIKNKFD 106
S+ +G++K + D
Sbjct: 72 RPASNVWTTQQDGEVKLRMD 91
>sp|Q3AXS1|Y1151_SYNS9 UPF0182 protein Syncc9902_1151 OS=Synechococcus sp. (strain CC9902)
GN=Syncc9902_1151 PE=3 SV=1
Length = 932
Score = 30.4 bits (67), Expect = 8.5, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 22/54 (40%)
Query: 133 RQIQVIDNDNGSHMRPMPGMMISTGFTVLWLTSFLCSVELCFALCYFWENPFSV 186
R ID+ RP+ GM S V L CSV L W+ PFS+
Sbjct: 61 RAFDRIDDPPRQQKRPIDGMRFSLVLMVSGLAFLACSVVLSDLAILAWKQPFSL 114
>sp|Q8R0A0|T2FB_MOUSE General transcription factor IIF subunit 2 OS=Mus musculus
GN=Gtf2f2 PE=1 SV=1
Length = 249
Score = 30.0 bits (66), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 84 MSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCR 122
++VF ESS+ K+S+EG + + + RP ENY KL R
Sbjct: 93 LTVFTESSSDKLSLEGIVVQRAECRP--AASENYMKLKR 129
>sp|Q01750|T2FB_RAT General transcription factor IIF subunit 2 OS=Rattus norvegicus
GN=Gtf2f2 PE=2 SV=1
Length = 249
Score = 30.0 bits (66), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 84 MSVFAESSNGKISVEGKIKNKFDMRPHHENMENYGKLCR 122
++VF ESS+ K+S+EG + + + RP ENY KL R
Sbjct: 93 LTVFTESSSDKLSLEGIVVQRAECRP--AASENYMKLKR 129
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.130 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,131,916
Number of Sequences: 539616
Number of extensions: 2482956
Number of successful extensions: 13645
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 12899
Number of HSP's gapped (non-prelim): 416
length of query: 194
length of database: 191,569,459
effective HSP length: 111
effective length of query: 83
effective length of database: 131,672,083
effective search space: 10928782889
effective search space used: 10928782889
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)