Query 029410
Match_columns 194
No_of_seqs 86 out of 88
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 12:28:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029410.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029410hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2905 Transcription initiati 100.0 8.5E-36 1.8E-40 258.9 9.3 145 1-170 20-172 (254)
2 PF02270 TFIIF_beta: Transcrip 100.0 3.9E-31 8.6E-36 230.7 7.5 133 1-150 13-189 (275)
3 COG5090 TFG2 Transcription ini 99.8 1.3E-19 2.8E-24 158.7 9.1 143 1-171 31-179 (297)
4 PF04004 Leo1: Leo1-like prote 51.8 61 0.0013 26.8 6.5 51 84-134 100-151 (171)
5 PF05132 RNA_pol_Rpc4: RNA pol 47.5 1.2E+02 0.0025 23.9 7.3 29 82-110 101-130 (131)
6 KOG3122 DNA-directed RNA polym 30.0 1.2E+02 0.0026 28.3 5.4 28 83-110 281-309 (310)
7 cd03725 SOCS_ASB6 SOCS (suppre 24.3 52 0.0011 21.9 1.5 31 117-153 6-36 (44)
8 PF03900 Porphobil_deamC: Porp 24.2 1.1E+02 0.0023 21.6 3.2 22 81-102 19-41 (74)
9 cd03729 SOCS_ASB13 SOCS (suppr 16.8 84 0.0018 20.5 1.3 22 117-139 6-27 (42)
10 PF06336 Corona_5a: Coronaviru 15.5 45 0.00097 24.2 -0.3 15 161-175 2-16 (65)
No 1
>KOG2905 consensus Transcription initiation factor IIF, small subunit (RAP30) [Transcription]
Probab=100.00 E-value=8.5e-36 Score=258.87 Aligned_cols=145 Identities=29% Similarity=0.504 Sum_probs=126.5
Q ss_pred CeeeeccHHHHHhhCCCCCCCCCCCCCCceeEEEEeeCCCCCCCCCCCCCCCCccEEEEE-----e--cCCCCCCCCcce
Q 029410 1 MWLMKCPALVSRSLKIPSSDNDDDDSARPVAKVILSIDPLQSNEDSSSSSSSSSTRFTME-----L--ISTESGNAPKRY 73 (194)
Q Consensus 1 VWLVKVPkyvS~~W~ka~~~~~~~d~~~~VgKv~I~~dp~~~~d~~~~~~~~~~v~ftLe-----l--~~~e~~~iPKey 73 (194)
|||||||+||+++|.++++ .+.+|+++|++.++. ++++|.|. . ...+.+++|..|
T Consensus 20 vWLvKvP~fLa~kw~~~~~-------~~e~g~l~i~k~~~d-----------aki~l~L~e~~p~~~~~~a~~g~~p~~~ 81 (254)
T KOG2905|consen 20 VWLVKVPKFLAEKWRKIPN-------SHESGKLRINKTPSD-----------AKIVLLLNEAIPEKQEREADVGKFPQQY 81 (254)
T ss_pred EEEEeccHHHHHHHHhccc-------ccccccccccCCCCc-----------ceEEEEeccccccchhhhhhcccCchhh
Confidence 7999999999999998765 134999999998854 56788776 2 334578999999
Q ss_pred ecccccCCceeEEEeeec-CCceEEEEEeeeeeeeecCCCChHHHHHHHHHHhhhhhccccceEEeccCCCCccccCCCc
Q 029410 74 SMDMSKDLIPMSVFAESS-NGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGM 152 (194)
Q Consensus 74 ~L~m~~~~qpm~VFSe~~-~gklalEGkVv~K~dcRP~~~~~~~YmkLkr~ri~kas~ptRqvQ~Ld~~v~~~~kP~pg~ 152 (194)
.++|+..+.||+|||+++ ++++++||+|+|+|||||+++ ++||||||+||.||+.|.|++|+||+++|++|+|+||+
T Consensus 82 ~~~~~~~~~~~~~~sd~~~~~k~a~eG~V~~e~~~~P~~n--e~Y~Rl~r~r~~k~~~k~r~vQ~iD~~~g~~~~p~~~~ 159 (254)
T KOG2905|consen 82 KLNMKRRFFNMFVESDSSGPKKTAVEGTVVHECDVRPSAN--EEYMRLKRERIVKASKKKRQVQVIDKVVGVHMKPVPGH 159 (254)
T ss_pred hhccCccccceeeeecCCCCccceeeeeeeeeeecccccC--HHHHHHHHHHHHHhcCcccccccchhhcccccccCCCc
Confidence 999999999999999988 689999999999999999988 99999999999999999999999999999999999999
Q ss_pred eecccccccccccceech
Q 029410 153 MISTGFTVLWLTSFLCSV 170 (194)
Q Consensus 153 ~~~s~~~~~~~~~~~~~~ 170 (194)
+-+ .|+ ++|.+.+
T Consensus 160 ~~~-~~~----~~~~rkK 172 (254)
T KOG2905|consen 160 LRS-SSN----IAYERKK 172 (254)
T ss_pred ccc-cch----hHHHHHh
Confidence 832 333 5666665
No 2
>PF02270 TFIIF_beta: Transcription initiation factor IIF, beta subunit; InterPro: IPR003196 Accurate transcription in vivo requires at least six general transcription initiation factors, in addition to RNA polymerase II. Transcription initiation factor IIF (TFIIF) is a tetramer of two beta subunits associate with two alpha subunits which interacts directly with RNA polymerase II. The beta subunit of TFIIF is required for recruitment of RNA polymerase II onto the promoter. ; GO: 0005524 ATP binding, 0006367 transcription initiation from RNA polymerase II promoter, 0005674 transcription factor TFIIF complex; PDB: 1F3U_C 2BBY_A 1BBY_A.
Probab=99.97 E-value=3.9e-31 Score=230.73 Aligned_cols=133 Identities=35% Similarity=0.574 Sum_probs=67.5
Q ss_pred CeeeeccHHHHHhhCCCCCCCCCCCCCCceeEEEEeeCCCCCCCCCCCCCCCCccEEEEEecCCCCCCCCcceecccccC
Q 029410 1 MWLMKCPALVSRSLKIPSSDNDDDDSARPVAKVILSIDPLQSNEDSSSSSSSSSTRFTMELISTESGNAPKRYSMDMSKD 80 (194)
Q Consensus 1 VWLVKVPkyvS~~W~ka~~~~~~~d~~~~VgKv~I~~dp~~~~d~~~~~~~~~~v~ftLel~~~e~~~iPKey~L~m~~~ 80 (194)
|||||||+||+++|+++++ ++ +..||+|+|..+++ +...++|+|+....+.+++|++|.|.|+++
T Consensus 13 vWLvKVPk~l~e~W~~~~~----~~-~~~iG~lri~~~~~----------~~~~v~l~L~~~~~~~~~iPkey~L~~~~~ 77 (275)
T PF02270_consen 13 VWLVKVPKFLSEKWSKAPD----DD-EIEIGKLRISKDPN----------GKPKVSLTLNDSLANHGNIPKEYDLDMSKD 77 (275)
T ss_dssp EEEEEEEHHHHHHHTTSBT----T---TEEEEEEEEEE-T----------TEEEEEEEE-HHHHT-T-S--EEEEEEE--
T ss_pred ccccccccccccccccccc----cc-cccccccccccccc----------cccccccccccccccccccccccccccccc
Confidence 7999999999999997654 12 23499999999832 235688888744444578999999999999
Q ss_pred -CceeEEEeeecC-------------------------------------------CceEEEEEeeeeeeeecCCCChHH
Q 029410 81 -LIPMSVFAESSN-------------------------------------------GKISVEGKIKNKFDMRPHHENMEN 116 (194)
Q Consensus 81 -~qpm~VFSe~~~-------------------------------------------gklalEGkVv~K~dcRP~~~~~~~ 116 (194)
.+||+||||.++ ++++|||+|.|+|+|+|..+ +.
T Consensus 78 ~~~n~~VFse~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~G~I~~~~~~~P~~~--~~ 155 (275)
T PF02270_consen 78 NVQNMYVFSESDQPGFKAKNKERAGAPNAGIPASLLREKKKKDRKRKYQPYVKTIPKKTALEGRIVHECDCRPVLN--DE 155 (275)
T ss_dssp TTEEEEEEEEETT----------------------------------------ETT--EEEEEEEEEEEEE---------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCceEEEEEEEEEEEeEECCC--HH
Confidence 599999999765 57899999999999999977 79
Q ss_pred HHHHHHHHhhhhhccccceEEeccCCCCccccCC
Q 029410 117 YGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMP 150 (194)
Q Consensus 117 YmkLkr~ri~kas~ptRqvQ~Ld~~v~~~~kP~p 150 (194)
|++++|+|+.++++|+|++|+||+++.+.|+|+.
T Consensus 156 Y~~~~~~r~~~a~~~kr~~~~i~~~~~~~~~~~~ 189 (275)
T PF02270_consen 156 YRRLKRERIEKANKPKRTVQQIDEDVSQSYKPVS 189 (275)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHhcCCCCeeEEeccccccCCCCcc
Confidence 9999999999999999999999997766898854
No 3
>COG5090 TFG2 Transcription initiation factor IIF, small subunit (RAP30) [Transcription]
Probab=99.80 E-value=1.3e-19 Score=158.70 Aligned_cols=143 Identities=20% Similarity=0.324 Sum_probs=116.0
Q ss_pred CeeeeccHHHHHhhCCCCCCCCCCCCCCceeEEEEeeCCCCCCCCCCCCCCCCccEEEEEecCCCCCCCCcceecccccC
Q 029410 1 MWLMKCPALVSRSLKIPSSDNDDDDSARPVAKVILSIDPLQSNEDSSSSSSSSSTRFTMELISTESGNAPKRYSMDMSKD 80 (194)
Q Consensus 1 VWLVKVPkyvS~~W~ka~~~~~~~d~~~~VgKv~I~~dp~~~~d~~~~~~~~~~v~ftLel~~~e~~~iPKey~L~m~~~ 80 (194)
|||||||.||+++|..-+ .+.+..+|+++++.|| +.+++.|. +..+++.+|++|.|.+.+-
T Consensus 31 VWLvkvP~FLaekw~sr~-----~~~g~~lg~~r~~~d~-------------a~isLlL~-ne~~n~~~P~~ydl~i~~k 91 (297)
T COG5090 31 VWLVKVPLFLAEKWLSRE-----AEIGELLGTKRTSTDP-------------AVISLLLS-NEFCNGGFPSSYDLKIKPK 91 (297)
T ss_pred EEEEeccHHHHHHHhcch-----hhhhhhhceeeecCCc-------------ceEEEEec-cCCccCCCCcceeeeeccc
Confidence 799999999999998322 2224459999999877 44677775 4456889999999999988
Q ss_pred Cc-eeEEEeeecC----CceEEEEEeeeeeeeecCCCChHHHHHHHHHHhhhhhccccceEEeccCCCCccccCCCce-e
Q 029410 81 LI-PMSVFAESSN----GKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMM-I 154 (194)
Q Consensus 81 ~q-pm~VFSe~~~----gklalEGkVv~K~dcRP~~~~~~~YmkLkr~ri~kas~ptRqvQ~Ld~~v~~~~kP~pg~~-~ 154 (194)
++ .-.||.|+.+ .+.+++|+|-|.|-+.|..+ ++|+|.++.|--++..|.|.+|+||...+..+- +|.+ .
T Consensus 92 ~v~n~yVfre~et~t~~k~tavvGtV~hEC~V~P~vN--d~Y~r~~q~r~~~~~~~K~~vq~iD~~~g~~~~--~~~~s~ 167 (297)
T COG5090 92 DVNNYYVFRESETSTHEKNTAVVGTVNHECYVTPEVN--DEYLRYKQDRGFKSDSKKSDVQVIDYLKGGKRG--EKFGSL 167 (297)
T ss_pred cccceEEEecccccccccccceeeeeccceeeccccc--HHHHHHHHHhhhhhcCccccceeeecccCceec--cCcccc
Confidence 66 6699977544 47999999999999999987 899999999999999999999999999997776 4444 4
Q ss_pred cccccccccccceechh
Q 029410 155 STGFTVLWLTSFLCSVE 171 (194)
Q Consensus 155 ~s~~~~~~~~~~~~~~~ 171 (194)
+| |+ ++||..+.
T Consensus 168 Rs-~~----~~fl~~~r 179 (297)
T COG5090 168 RS-ST----LEFLARKR 179 (297)
T ss_pred cc-ch----HHHHHhcc
Confidence 44 55 78988753
No 4
>PF04004 Leo1: Leo1-like protein; InterPro: IPR007149 Members of this family are part of the Paf1/RNA polymerase II complex [, ]. The Paf1 complex probably functions during the elongation phase of transcription [].
Probab=51.76 E-value=61 Score=26.85 Aligned_cols=51 Identities=18% Similarity=0.354 Sum_probs=37.5
Q ss_pred eEEEeeec-CCceEEEEEeeeeeeeecCCCChHHHHHHHHHHhhhhhccccc
Q 029410 84 MSVFAESS-NGKISVEGKIKNKFDMRPHHENMENYGKLCRERTNKYMTKSRQ 134 (194)
Q Consensus 84 m~VFSe~~-~gklalEGkVv~K~dcRP~~~~~~~YmkLkr~ri~kas~ptRq 134 (194)
.++|-... .+-+...|.+..++-.||++.++...++|-+..-.+..++++.
T Consensus 100 ~~L~~~~~~~~~l~~~~~i~~~l~~rP~s~~s~thr~l~~~~~~r~~k~~~~ 151 (171)
T PF04004_consen 100 NYLFVRHGSSGVLQGQGHITKKLTFRPASTDSATHRRLTQAVASRSSKKQQK 151 (171)
T ss_pred ceEEEEcCCcceEEEEEEecccEEEecCCccCHHHHHHHHHHHhhhcccccc
Confidence 45555443 3678899999999999999877777887776666655566654
No 5
>PF05132 RNA_pol_Rpc4: RNA polymerase III RPC4; InterPro: IPR007811 This family comprises a specific subunit for Pol III, the tRNA specific polymerase.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006383 transcription from RNA polymerase III promoter, 0005666 DNA-directed RNA polymerase III complex
Probab=47.53 E-value=1.2e+02 Score=23.92 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=21.4
Q ss_pred ceeEEEee-ecCCceEEEEEeeeeeeeecC
Q 029410 82 IPMSVFAE-SSNGKISVEGKIKNKFDMRPH 110 (194)
Q Consensus 82 qpm~VFSe-~~~gklalEGkVv~K~dcRP~ 110 (194)
|.+....+ ...+++..=|.|.+||-|.|.
T Consensus 101 Qevv~i~~~~~~~~~~~LG~v~~k~v~tPd 130 (131)
T PF05132_consen 101 QEVVAIDEEEEEGECYFLGQVSGKFVVTPD 130 (131)
T ss_pred heEEEeeccCCCCeEEEeccccceEEEccC
Confidence 44433333 355789999999999999995
No 6
>KOG3122 consensus DNA-directed RNA polymerase III subunit [Transcription]
Probab=30.00 E-value=1.2e+02 Score=28.25 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=22.7
Q ss_pred eeEEEeee-cCCceEEEEEeeeeeeeecC
Q 029410 83 PMSVFAES-SNGKISVEGKIKNKFDMRPH 110 (194)
Q Consensus 83 pm~VFSe~-~~gklalEGkVv~K~dcRP~ 110 (194)
.|.|=-.+ +++...+-|.|.||+-|.|.
T Consensus 281 l~sV~l~d~rs~nm~~LG~v~~klvvTPD 309 (310)
T KOG3122|consen 281 LMSVGLGDSRSGNMTLLGSVKKKLVVTPD 309 (310)
T ss_pred hheeecccccCCceEEeccccceeeeCCC
Confidence 55555554 67999999999999999994
No 7
>cd03725 SOCS_ASB6 SOCS (suppressors of cytokine signaling) box of ASB6-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. ASB6 interacts with the adaptor protein APS and recruits elongin B/C to the insulin receptor signaling complex. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=24.31 E-value=52 Score=21.93 Aligned_cols=31 Identities=16% Similarity=0.231 Sum_probs=21.2
Q ss_pred HHHHHHHHhhhhhccccceEEeccCCCCccccCCCce
Q 029410 117 YGKLCRERTNKYMTKSRQIQVIDNDNGSHMRPMPGMM 153 (194)
Q Consensus 117 YmkLkr~ri~kas~ptRqvQ~Ld~~v~~~~kP~pg~~ 153 (194)
-+.|||..|++.+.+.|..+.++. -|+|..+
T Consensus 6 LqhLCR~~Ir~~lg~~~~~~~i~~------LpLP~~L 36 (44)
T cd03725 6 LKHLCRVFIRLCLRPWPVDVKVKA------LPLPDRL 36 (44)
T ss_pred HHHHHHHHHHHhcCcccccccccc------CCCCHHH
Confidence 578999999999877655443331 2677554
No 8
>PF03900 Porphobil_deamC: Porphobilinogen deaminase, C-terminal domain; InterPro: IPR022418 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. Porphobilinogen deaminase (also known as hydroxymethylbilane synthase, 2.5.1.61 from EC) functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the polymerisation of four PBG molecules into the tetrapyrrole structure, preuroporphyrinogen, with the concomitant release of four molecules of ammonia. This enzyme uses a unique dipyrro-methane cofactor made from two molecules of PBG, which is covalently attached to a cysteine side chain. The tetrapyrrole product is synthesized in an ordered, sequential fashion, by initial attachment of the first pyrrole unit (ring A) to the cofactor, followed by subsequent additions of the remaining pyrrole units (rings B, C, D) to the growing pyrrole chain []. The link between the pyrrole ring and the cofactor is broken once all the pyrroles have been added. This enzyme is folded into three distinct domains that enclose a single, large active site that makes use of an aspartic acid as its one essential catalytic residue, acting as a general acid/base during catalysis [, ]. A deficiency of hydroxymethylbilane synthase is implicated in the neuropathic disease, Acute Intermittent Porphyria (AIP) []. This entry represents the C-terminal domain of porphobilinogen deaminase, an enzyme involved in tetrapyrrole biosynthesis. The structure of this alpha/beta domain consists of alpha-beta(3)-alpha in two layers []. Porphobilinogen deaminase has a three-domain structure. Domains 1 (N-terminal) and 2 are duplications with the same structure, resembling the transferrins and periplasmic binding proteins. The dipyrromethane cofactor is covalently linked to domain 3 (C-terminal), but is bound by extensive salt-bridges and hydrogen-bonds within the cleft between domains 1 and 2, at a position corresponding to the binding sites for small-molecule ligands in the analogous proteins []. The enzyme has a single catalytic site, and the flexibility between domains is thought to aid elongation of the polypyrrole product in the active-site cleft of the enzyme.; GO: 0033014 tetrapyrrole biosynthetic process; PDB: 3EQ1_B 3ECR_A 1GTK_A 1AH5_A 2YPN_A 1PDA_A 1YPN_A.
Probab=24.18 E-value=1.1e+02 Score=21.65 Aligned_cols=22 Identities=9% Similarity=0.329 Sum_probs=19.6
Q ss_pred CceeEEEeeecCCc-eEEEEEee
Q 029410 81 LIPMSVFAESSNGK-ISVEGKIK 102 (194)
Q Consensus 81 ~qpm~VFSe~~~gk-lalEGkVv 102 (194)
..|+++|+....++ +.|.|.|.
T Consensus 19 ~~Piga~a~~~~~~~l~l~~~v~ 41 (74)
T PF03900_consen 19 HSPIGAYAKIEGDERLRLRAMVG 41 (74)
T ss_dssp TSSEEEEEEEETTE-EEEEEEEE
T ss_pred CCceeeEEEEcCCCEEEEEEEEE
Confidence 67999999999888 99999885
No 9
>cd03729 SOCS_ASB13 SOCS (suppressors of cytokine signaling) box of ASB13-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=16.77 E-value=84 Score=20.54 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=15.6
Q ss_pred HHHHHHHHhhhhhccccceEEec
Q 029410 117 YGKLCRERTNKYMTKSRQIQVID 139 (194)
Q Consensus 117 YmkLkr~ri~kas~ptRqvQ~Ld 139 (194)
=+.|||..|++.... +..+.|+
T Consensus 6 LqhLCR~~Ir~~lg~-~~~~~i~ 27 (42)
T cd03729 6 LQQLCRINLRKALGT-RALEKIA 27 (42)
T ss_pred HHHHHHHHHHHHhch-hhhccCc
Confidence 578999999988765 4444444
No 10
>PF06336 Corona_5a: Coronavirus 5a protein; InterPro: IPR009404 This family consists of several Coronavirus 5a proteins. The function of this family is unknown [].
Probab=15.49 E-value=45 Score=24.15 Aligned_cols=15 Identities=40% Similarity=0.751 Sum_probs=12.6
Q ss_pred cccccceechhhhhh
Q 029410 161 LWLTSFLCSVELCFA 175 (194)
Q Consensus 161 ~~~~~~~~~~~~~~~ 175 (194)
-|+|||-+.+-.|+-
T Consensus 2 kwltsfgra~iscyk 16 (65)
T PF06336_consen 2 KWLTSFGRAFISCYK 16 (65)
T ss_pred chHHHHhHHHHHHHH
Confidence 499999998888874
Done!