Query 029411
Match_columns 194
No_of_seqs 219 out of 1092
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 20:32:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029411.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029411hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmn_A Homeobox protein TGIF2L 99.8 3E-21 1E-25 139.0 7.1 68 111-178 6-73 (83)
2 3k2a_A Homeobox protein MEIS2; 99.8 4.7E-20 1.6E-24 127.8 7.0 61 116-176 2-62 (67)
3 1x2n_A Homeobox protein pknox1 99.8 6.7E-20 2.3E-24 128.4 7.4 66 111-176 6-71 (73)
4 2lk2_A Homeobox protein TGIF1; 99.8 2.7E-20 9.3E-25 136.2 5.6 59 116-174 9-67 (89)
5 1du6_A PBX1, homeobox protein 99.8 2.2E-19 7.5E-24 122.7 6.9 62 112-173 3-64 (64)
6 1puf_B PRE-B-cell leukemia tra 99.8 5.1E-19 1.8E-23 123.9 7.4 66 113-178 2-67 (73)
7 1k61_A Mating-type protein alp 99.8 7.4E-19 2.5E-23 118.6 7.6 59 115-173 1-59 (60)
8 1le8_B Mating-type protein alp 99.8 1.4E-18 4.8E-23 124.8 8.3 65 112-176 2-66 (83)
9 1mnm_C Protein (MAT alpha-2 tr 99.7 2.4E-18 8.2E-23 124.5 7.8 62 111-172 26-87 (87)
10 1b72_B Protein (PBX1); homeodo 99.7 1.5E-18 5E-23 125.2 6.5 65 113-177 2-66 (87)
11 2ecc_A Homeobox and leucine zi 99.7 3.9E-17 1.3E-21 116.3 7.8 58 114-174 5-62 (76)
12 1akh_A Protein (mating-type pr 99.7 4.4E-17 1.5E-21 110.0 6.8 58 111-171 4-61 (61)
13 1bw5_A ISL-1HD, insulin gene e 99.7 1.7E-16 5.7E-21 109.0 8.1 62 111-175 2-63 (66)
14 2k40_A Homeobox expressed in E 99.7 1.7E-16 5.8E-21 109.2 7.0 65 113-180 2-66 (67)
15 2hdd_A Protein (engrailed home 99.6 2.7E-16 9.2E-21 106.3 7.0 59 111-172 2-60 (61)
16 2cra_A Homeobox protein HOX-B1 99.6 5.3E-16 1.8E-20 107.7 8.0 60 112-174 7-66 (70)
17 2da2_A Alpha-fetoprotein enhan 99.6 5.9E-16 2E-20 107.3 7.9 61 112-175 7-67 (70)
18 2dmq_A LIM/homeobox protein LH 99.6 2.8E-16 9.6E-21 111.5 6.1 64 112-178 7-70 (80)
19 1ig7_A Homeotic protein MSX-1; 99.6 4.7E-16 1.6E-20 103.9 6.5 57 113-172 1-57 (58)
20 2dmu_A Homeobox protein goosec 99.6 4.9E-16 1.7E-20 107.8 6.9 60 112-174 7-66 (70)
21 2dms_A Homeobox protein OTX2; 99.6 6.3E-16 2.1E-20 109.9 7.5 64 112-178 7-70 (80)
22 1jgg_A Segmentation protein EV 99.6 5.8E-16 2E-20 104.3 6.6 58 113-173 2-59 (60)
23 2djn_A Homeobox protein DLX-5; 99.6 7.2E-16 2.5E-20 107.0 7.2 60 112-174 7-66 (70)
24 2h1k_A IPF-1, pancreatic and d 99.6 5.6E-16 1.9E-20 105.5 6.5 59 112-173 3-61 (63)
25 2da1_A Alpha-fetoprotein enhan 99.6 5.5E-16 1.9E-20 107.4 6.4 61 112-175 7-67 (70)
26 2da4_A Hypothetical protein DK 99.6 2.5E-16 8.6E-21 112.0 4.6 64 111-174 7-71 (80)
27 2vi6_A Homeobox protein nanog; 99.6 9.2E-16 3.1E-20 104.0 7.1 58 112-172 3-60 (62)
28 2e1o_A Homeobox protein PRH; D 99.6 5.9E-16 2E-20 107.4 6.3 60 112-174 7-66 (70)
29 3rkq_A Homeobox protein NKX-2. 99.6 9.6E-16 3.3E-20 101.9 6.6 57 112-171 2-58 (58)
30 2l7z_A Homeobox protein HOX-A1 99.6 1.6E-15 5.4E-20 106.2 7.9 63 112-177 7-69 (73)
31 2dmt_A Homeobox protein BARH-l 99.6 1.6E-15 5.5E-20 107.9 7.9 61 112-175 17-77 (80)
32 2da3_A Alpha-fetoprotein enhan 99.6 7.5E-16 2.6E-20 109.1 6.0 61 111-174 16-76 (80)
33 1ftt_A TTF-1 HD, thyroid trans 99.6 1.3E-15 4.3E-20 105.3 6.8 62 112-176 2-63 (68)
34 1fjl_A Paired protein; DNA-bin 99.6 1E-15 3.5E-20 109.0 6.3 60 111-173 17-76 (81)
35 2dn0_A Zinc fingers and homeob 99.6 4.2E-15 1.4E-19 104.8 8.5 63 113-178 9-71 (76)
36 1ahd_P Antennapedia protein mu 99.6 1.1E-15 3.9E-20 105.6 5.4 60 112-174 2-61 (68)
37 3a02_A Homeobox protein arista 99.6 2.6E-15 8.8E-20 101.1 6.9 56 115-173 2-57 (60)
38 2cue_A Paired box protein PAX6 99.6 8E-16 2.7E-20 109.5 4.0 62 111-175 6-67 (80)
39 1nk2_P Homeobox protein VND; h 99.6 2.4E-15 8.3E-20 106.2 6.4 60 112-174 9-68 (77)
40 1zq3_P PRD-4, homeotic bicoid 99.6 2.1E-15 7.1E-20 104.2 5.7 60 112-174 2-61 (68)
41 1yz8_P Pituitary homeobox 2; D 99.6 6.9E-16 2.4E-20 106.5 3.0 61 112-175 3-63 (68)
42 1wh5_A ZF-HD homeobox family p 99.6 3.9E-15 1.3E-19 106.4 6.9 63 111-173 16-79 (80)
43 2kt0_A Nanog, homeobox protein 99.6 6.8E-15 2.3E-19 105.3 8.0 61 111-174 21-81 (84)
44 2d5v_A Hepatocyte nuclear fact 99.6 3.8E-15 1.3E-19 118.9 7.4 63 110-175 95-157 (164)
45 2ecb_A Zinc fingers and homeob 99.6 1.1E-14 3.9E-19 106.3 8.7 61 115-178 14-74 (89)
46 2m0c_A Homeobox protein arista 99.6 6.7E-15 2.3E-19 102.8 7.2 61 111-174 8-68 (75)
47 1puf_A HOX-1.7, homeobox prote 99.6 5.1E-15 1.7E-19 104.6 6.6 59 112-173 13-71 (77)
48 1b8i_A Ultrabithorax, protein 99.6 7.1E-15 2.4E-19 104.9 7.1 61 111-174 19-79 (81)
49 2cuf_A FLJ21616 protein; homeo 99.6 3.1E-15 1.1E-19 109.7 5.4 63 111-176 6-83 (95)
50 3a03_A T-cell leukemia homeobo 99.5 5.9E-15 2E-19 98.3 5.9 53 117-172 2-54 (56)
51 1uhs_A HOP, homeodomain only p 99.5 6.1E-15 2.1E-19 102.8 6.1 58 114-174 3-61 (72)
52 3a01_A Homeodomain-containing 99.5 4E-15 1.4E-19 109.0 5.1 63 111-176 16-78 (93)
53 2hi3_A Homeodomain-only protei 99.5 8.4E-15 2.9E-19 102.4 6.2 59 113-174 3-62 (73)
54 2ly9_A Zinc fingers and homeob 99.5 3.2E-14 1.1E-18 99.4 8.5 62 112-176 6-67 (74)
55 2da5_A Zinc fingers and homeob 99.5 1.1E-14 3.8E-19 102.5 6.1 59 114-175 9-67 (75)
56 3nau_A Zinc fingers and homeob 99.5 1E-14 3.5E-19 101.0 5.6 51 119-172 11-61 (66)
57 3d1n_I POU domain, class 6, tr 99.5 1.6E-14 5.3E-19 114.2 7.3 59 111-172 92-150 (151)
58 2r5y_A Homeotic protein sex co 99.5 1.4E-14 4.8E-19 104.7 6.2 60 111-173 27-86 (88)
59 2dmp_A Zinc fingers and homeob 99.5 4.5E-14 1.5E-18 102.6 8.7 58 115-175 16-73 (89)
60 3nar_A ZHX1, zinc fingers and 99.5 3.4E-14 1.1E-18 104.4 7.4 60 112-174 25-84 (96)
61 1b72_A Protein (homeobox prote 99.5 2E-14 6.9E-19 105.7 5.7 60 111-173 33-92 (97)
62 1wh7_A ZF-HD homeobox family p 99.5 4.1E-14 1.4E-18 101.3 5.5 62 111-173 16-79 (80)
63 2e19_A Transcription factor 8; 99.5 1E-13 3.4E-18 95.1 7.0 55 115-172 6-60 (64)
64 1au7_A Protein PIT-1, GHF-1; c 99.5 1.1E-13 3.8E-18 109.1 7.7 60 111-173 86-145 (146)
65 1e3o_C Octamer-binding transcr 99.5 1.1E-13 3.6E-18 110.5 7.7 60 111-173 100-159 (160)
66 1wi3_A DNA-binding protein SAT 99.5 1.9E-13 6.3E-18 95.2 7.5 61 111-174 6-67 (71)
67 2xsd_C POU domain, class 3, tr 99.4 1.7E-13 5.7E-18 110.1 7.2 62 111-175 98-159 (164)
68 2da6_A Hepatocyte nuclear fact 99.4 7.2E-14 2.5E-18 104.4 4.6 62 111-175 5-87 (102)
69 2l9r_A Homeobox protein NKX-3. 99.4 3.8E-13 1.3E-17 93.8 7.9 55 118-175 10-64 (69)
70 2cqx_A LAG1 longevity assuranc 99.4 1.4E-13 4.6E-18 96.5 5.0 58 114-174 10-68 (72)
71 1lfb_A Liver transcription fac 99.4 3.1E-13 1E-17 100.4 6.7 61 111-174 8-89 (99)
72 3l1p_A POU domain, class 5, tr 99.4 2.6E-13 8.7E-18 107.9 4.7 60 111-173 95-154 (155)
73 1x2m_A LAG1 longevity assuranc 99.3 1.6E-12 5.3E-17 89.6 5.5 50 122-174 10-60 (64)
74 2h8r_A Hepatocyte nuclear fact 99.2 7.2E-12 2.4E-16 105.0 6.6 56 112-170 142-218 (221)
75 1ic8_A Hepatocyte nuclear fact 99.2 5.1E-12 1.7E-16 104.2 4.7 59 111-172 114-193 (194)
76 1mh3_A Maltose binding-A1 home 99.2 6.5E-12 2.2E-16 110.1 5.7 56 113-171 366-421 (421)
77 2da7_A Zinc finger homeobox pr 99.1 6.1E-11 2.1E-15 82.8 6.2 47 121-170 14-60 (71)
78 2nzz_A Penetratin conjugated G 97.0 5.1E-05 1.7E-09 46.5 -1.3 22 157-178 1-22 (37)
79 2ys9_A Homeobox and leucine zi 96.9 0.00062 2.1E-08 47.2 3.0 45 119-166 13-57 (70)
80 1hlv_A CENP-B, major centromer 89.2 1.1 3.9E-05 32.5 6.7 49 114-168 3-51 (131)
81 2glo_A Brinker CG9653-PA; prot 86.1 1.5 5.3E-05 27.8 5.1 47 116-166 3-49 (59)
82 3c57_A Two component transcrip 84.4 1.7 5.7E-05 30.4 5.0 63 117-188 26-90 (95)
83 2elh_A CG11849-PA, LD40883P; s 81.9 2.5 8.7E-05 28.9 5.1 46 114-167 18-63 (87)
84 2o8x_A Probable RNA polymerase 80.9 1.5 5E-05 28.1 3.3 51 117-175 14-64 (70)
85 3hug_A RNA polymerase sigma fa 80.0 1.2 4E-05 30.7 2.8 49 118-174 37-85 (92)
86 1tc3_C Protein (TC3 transposas 79.5 2.2 7.5E-05 24.7 3.6 42 117-166 4-45 (51)
87 2p7v_B Sigma-70, RNA polymeras 79.1 2.6 8.7E-05 27.3 4.1 55 118-176 5-59 (68)
88 1tty_A Sigma-A, RNA polymerase 78.8 2.6 8.9E-05 28.8 4.3 56 118-177 18-73 (87)
89 1ku3_A Sigma factor SIGA; heli 77.0 2.6 8.7E-05 27.7 3.7 55 117-175 9-64 (73)
90 1x3u_A Transcriptional regulat 73.1 2.4 8.3E-05 27.8 2.7 47 119-174 17-63 (79)
91 3mzy_A RNA polymerase sigma-H 73.0 2.1 7.3E-05 31.2 2.7 48 118-174 109-156 (164)
92 1je8_A Nitrate/nitrite respons 70.0 5.9 0.0002 26.7 4.2 48 118-174 21-68 (82)
93 1s7o_A Hypothetical UPF0122 pr 69.5 3.6 0.00012 29.9 3.2 49 118-174 22-70 (113)
94 1fse_A GERE; helix-turn-helix 69.2 7.8 0.00027 24.7 4.6 51 115-174 8-58 (74)
95 2rn7_A IS629 ORFA; helix, all 67.6 16 0.00056 25.3 6.3 52 116-168 4-56 (108)
96 2rnj_A Response regulator prot 67.0 12 0.00042 25.3 5.4 48 118-174 29-76 (91)
97 1rp3_A RNA polymerase sigma fa 65.7 3.9 0.00013 31.8 2.9 49 117-173 186-234 (239)
98 1iuf_A Centromere ABP1 protein 65.5 7.7 0.00026 29.0 4.4 50 113-168 6-62 (144)
99 1or7_A Sigma-24, RNA polymeras 64.9 4.1 0.00014 30.8 2.8 49 118-174 140-188 (194)
100 2q1z_A RPOE, ECF SIGE; ECF sig 63.7 2.6 8.9E-05 31.7 1.5 47 118-172 135-181 (184)
101 1jko_C HIN recombinase, DNA-in 61.4 6.8 0.00023 22.9 2.9 40 118-165 5-44 (52)
102 1xsv_A Hypothetical UPF0122 pr 60.2 5.2 0.00018 28.9 2.5 49 118-174 25-73 (113)
103 1p4w_A RCSB; solution structur 58.6 16 0.00056 25.7 4.9 50 116-174 32-81 (99)
104 3bd1_A CRO protein; transcript 58.0 5.9 0.0002 26.0 2.3 23 145-167 14-36 (79)
105 3lsg_A Two-component response 57.9 22 0.00075 24.3 5.4 41 123-166 3-43 (103)
106 2xi8_A Putative transcription 55.2 5.5 0.00019 24.5 1.7 22 145-166 17-38 (66)
107 2r1j_L Repressor protein C2; p 54.8 5.8 0.0002 24.6 1.7 22 145-166 21-42 (68)
108 1zug_A Phage 434 CRO protein; 52.9 6.1 0.00021 24.8 1.6 24 145-168 19-42 (71)
109 3t72_q RNA polymerase sigma fa 52.7 12 0.00041 26.6 3.3 54 118-175 19-72 (99)
110 2jn6_A Protein CGL2762, transp 52.0 15 0.00052 25.0 3.8 43 117-167 4-48 (97)
111 3clo_A Transcriptional regulat 51.3 22 0.00076 28.7 5.2 49 117-174 196-244 (258)
112 2jpc_A SSRB; DNA binding prote 51.1 16 0.00055 22.4 3.5 29 146-174 17-45 (61)
113 1adr_A P22 C2 repressor; trans 49.9 7.6 0.00026 24.6 1.7 22 145-166 21-42 (76)
114 3bs3_A Putative DNA-binding pr 49.8 7.8 0.00027 24.7 1.8 23 145-167 26-48 (76)
115 1r69_A Repressor protein CI; g 49.0 7.9 0.00027 24.1 1.7 23 145-167 17-39 (69)
116 2lfw_A PHYR sigma-like domain; 48.8 17 0.00057 27.0 3.8 54 117-178 92-145 (157)
117 2b5a_A C.BCLI; helix-turn-heli 48.7 8.1 0.00028 24.7 1.7 22 145-166 26-47 (77)
118 2wiu_B HTH-type transcriptiona 48.6 12 0.0004 24.6 2.6 23 145-167 28-50 (88)
119 3omt_A Uncharacterized protein 47.5 8.1 0.00028 24.7 1.6 22 145-166 24-45 (73)
120 3b7h_A Prophage LP1 protein 11 47.3 7.9 0.00027 24.8 1.5 23 145-167 23-45 (78)
121 3kz3_A Repressor protein CI; f 46.9 8.1 0.00028 25.3 1.5 22 146-167 29-50 (80)
122 1l0o_C Sigma factor; bergerat 46.5 4.2 0.00014 31.5 0.0 47 117-171 197-243 (243)
123 2k27_A Paired box protein PAX- 46.0 77 0.0026 23.2 7.2 50 116-168 81-137 (159)
124 1rzs_A Antirepressor, regulato 46.0 10 0.00034 24.2 1.8 19 145-163 13-31 (61)
125 2a6c_A Helix-turn-helix motif; 45.7 9.8 0.00033 25.2 1.8 23 145-167 34-56 (83)
126 1y7y_A C.AHDI; helix-turn-heli 45.5 9.8 0.00033 24.0 1.7 22 145-166 29-50 (74)
127 3ulq_B Transcriptional regulat 45.1 34 0.0012 23.4 4.7 52 114-174 25-76 (90)
128 1u78_A TC3 transposase, transp 42.6 31 0.0011 24.4 4.3 43 117-167 5-47 (141)
129 2ict_A Antitoxin HIGA; helix-t 42.5 13 0.00043 25.0 2.0 22 145-166 24-45 (94)
130 1neq_A DNA-binding protein NER 42.4 12 0.0004 25.0 1.8 20 146-165 26-45 (74)
131 2hin_A GP39, repressor protein 41.4 18 0.00062 24.3 2.6 21 145-165 13-33 (71)
132 2ef8_A C.ECOT38IS, putative tr 41.4 12 0.0004 24.3 1.6 23 145-167 26-48 (84)
133 1pdn_C Protein (PRD paired); p 41.0 39 0.0013 23.1 4.6 43 118-168 17-59 (128)
134 2kpj_A SOS-response transcript 40.7 12 0.00042 25.2 1.7 22 145-166 25-46 (94)
135 3bj4_A Potassium voltage-gated 40.5 15 0.00052 23.3 2.0 18 16-33 30-47 (49)
136 2k9q_A Uncharacterized protein 40.1 12 0.0004 24.2 1.5 22 145-166 18-39 (77)
137 2x48_A CAG38821; archeal virus 38.4 17 0.00059 21.9 2.0 20 145-164 34-53 (55)
138 2v79_A DNA replication protein 38.3 52 0.0018 24.4 5.1 50 117-169 28-78 (135)
139 1pdn_C Protein (PRD paired); p 38.3 32 0.0011 23.6 3.7 47 116-165 73-126 (128)
140 1lmb_3 Protein (lambda repress 38.1 13 0.00046 24.6 1.6 22 145-166 33-54 (92)
141 3f6w_A XRE-family like protein 38.0 14 0.00047 24.1 1.6 21 146-166 31-51 (83)
142 1u78_A TC3 transposase, transp 37.1 69 0.0024 22.5 5.5 46 116-168 58-105 (141)
143 2q0o_A Probable transcriptiona 35.3 43 0.0015 26.4 4.5 50 116-174 173-222 (236)
144 3mn2_A Probable ARAC family tr 35.2 87 0.003 21.3 5.6 40 123-166 3-42 (108)
145 2l49_A C protein; P2 bacteriop 35.1 17 0.00059 24.4 1.8 23 145-167 20-42 (99)
146 1x57_A Endothelial differentia 35.0 17 0.00059 24.2 1.7 21 146-166 30-50 (91)
147 2ewt_A BLDD, putative DNA-bind 34.8 18 0.00061 22.6 1.7 21 146-166 25-47 (71)
148 1k78_A Paired box protein PAX5 34.3 59 0.002 23.5 4.8 44 117-168 31-74 (149)
149 3oio_A Transcriptional regulat 34.3 77 0.0026 21.8 5.2 40 123-166 8-47 (113)
150 3t76_A VANU, transcriptional r 33.8 18 0.00061 24.9 1.7 22 145-166 40-61 (88)
151 3s8q_A R-M controller protein; 33.7 17 0.00059 23.6 1.5 22 145-166 27-48 (82)
152 2pij_A Prophage PFL 6 CRO; tra 33.4 21 0.00071 22.3 1.8 22 145-166 16-37 (67)
153 3fmy_A HTH-type transcriptiona 33.2 22 0.00076 22.9 2.0 23 145-167 27-49 (73)
154 3iyd_F RNA polymerase sigma fa 32.8 27 0.00091 32.4 3.1 56 117-176 549-604 (613)
155 2ofy_A Putative XRE-family tra 32.3 19 0.00064 23.6 1.5 22 146-167 31-52 (86)
156 2k27_A Paired box protein PAX- 32.2 50 0.0017 24.3 4.1 42 117-166 24-65 (159)
157 2kvv_A Putative excisionase; D 31.0 57 0.002 22.6 3.8 38 146-187 14-51 (78)
158 1l3l_A Transcriptional activat 30.7 55 0.0019 25.7 4.3 52 114-174 169-220 (234)
159 3qq6_A HTH-type transcriptiona 30.6 31 0.0011 22.4 2.4 20 146-165 27-46 (78)
160 2w9j_A Signal recognition part 29.2 32 0.0011 24.3 2.3 19 17-35 65-83 (91)
161 3kz3_A Repressor protein CI; f 28.9 79 0.0027 20.2 4.3 38 125-165 40-77 (80)
162 3eus_A DNA-binding protein; st 28.8 24 0.00082 23.4 1.6 22 146-167 31-52 (86)
163 3cec_A Putative antidote prote 28.5 24 0.00081 24.1 1.6 22 145-166 34-55 (104)
164 2vn2_A DNAD, chromosome replic 28.4 1.6E+02 0.0056 21.0 7.3 52 112-166 23-75 (128)
165 1l9z_H Sigma factor SIGA; heli 28.2 45 0.0016 29.9 3.7 53 118-174 375-428 (438)
166 1b0n_A Protein (SINR protein); 28.1 24 0.00082 24.1 1.6 21 145-165 17-37 (111)
167 3op9_A PLI0006 protein; struct 28.1 26 0.0009 24.3 1.8 22 145-166 25-46 (114)
168 1e8o_B SRP14, signal recogniti 27.9 31 0.0011 25.0 2.2 17 17-33 73-89 (106)
169 3swk_A Vimentin; cytoskeleton, 27.9 1.5E+02 0.0051 20.4 5.8 43 17-59 21-76 (86)
170 2iw5_B Protein corest, REST co 27.8 1.1E+02 0.0038 25.3 5.7 74 91-171 108-182 (235)
171 3ivp_A Putative transposon-rel 27.6 25 0.00084 25.0 1.6 22 145-166 28-49 (126)
172 2eby_A Putative HTH-type trans 27.4 25 0.00086 24.3 1.6 22 145-166 27-48 (113)
173 1k78_A Paired box protein PAX5 26.7 1.7E+02 0.006 20.8 6.7 49 116-167 88-143 (149)
174 1c05_A Ribosomal protein S4 de 26.1 43 0.0015 25.6 2.8 28 143-170 11-38 (159)
175 1hlv_A CENP-B, major centromer 25.7 1.1E+02 0.0037 21.5 4.8 58 112-170 66-130 (131)
176 1uxc_A FRUR (1-57), fructose r 25.3 35 0.0012 22.1 1.9 22 146-167 4-25 (65)
177 2jvl_A TRMBF1; coactivator, he 25.1 28 0.00097 24.3 1.5 22 146-167 53-74 (107)
178 2ppx_A AGR_C_3184P, uncharacte 25.0 31 0.001 23.5 1.6 21 146-166 47-67 (99)
179 1jhf_A LEXA repressor; LEXA SO 24.5 1.2E+02 0.0039 23.2 5.1 43 119-167 4-51 (202)
180 3mlf_A Transcriptional regulat 24.5 32 0.0011 24.2 1.7 21 146-166 40-60 (111)
181 1y66_A Engrailed homeodomain; 24.4 26 0.00088 21.8 0.9 46 120-168 5-50 (52)
182 1zs4_A Regulatory protein CII; 24.2 43 0.0015 23.3 2.3 20 145-164 27-46 (83)
183 2a6h_F RNA polymerase sigma fa 24.1 56 0.0019 28.8 3.6 53 118-174 360-413 (423)
184 3vk0_A NHTF, transcriptional r 24.0 30 0.001 24.2 1.4 22 146-167 38-59 (114)
185 2jml_A DNA binding domain/tran 23.9 35 0.0012 22.6 1.7 19 146-164 9-27 (81)
186 3mkl_A HTH-type transcriptiona 23.5 81 0.0028 22.0 3.8 40 121-164 6-45 (120)
187 2k9s_A Arabinose operon regula 23.3 1.8E+02 0.006 19.6 5.8 39 124-165 5-43 (107)
188 3trb_A Virulence-associated pr 23.2 34 0.0012 24.1 1.6 23 145-167 30-52 (104)
189 1j9i_A GPNU1 DBD;, terminase s 22.9 54 0.0018 20.9 2.5 21 145-165 5-25 (68)
190 3lfp_A CSP231I C protein; tran 22.8 39 0.0013 22.8 1.8 22 145-166 17-42 (98)
191 3f52_A CLP gene regulator (CLG 22.4 35 0.0012 23.7 1.5 22 146-167 45-66 (117)
192 3g5g_A Regulatory protein; tra 22.4 36 0.0012 23.5 1.6 22 145-166 44-65 (99)
193 2lv7_A Calcium-binding protein 22.0 1.9E+02 0.0065 19.5 5.9 53 113-165 24-80 (100)
194 3oou_A LIN2118 protein; protei 21.2 1.1E+02 0.0038 20.8 4.0 39 124-166 7-45 (108)
195 2jrt_A Uncharacterized protein 21.0 54 0.0019 23.1 2.3 44 115-166 29-73 (95)
196 1bl0_A Protein (multiple antib 20.8 1.4E+02 0.0047 21.1 4.6 42 120-165 9-50 (129)
197 3qp6_A CVIR transcriptional re 20.3 1.2E+02 0.0041 24.5 4.6 49 117-174 196-244 (265)
No 1
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.84 E-value=3e-21 Score=139.01 Aligned_cols=68 Identities=43% Similarity=0.669 Sum_probs=62.9
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCCCCcc
Q 029411 111 LKKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQ 178 (194)
Q Consensus 111 ~kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~~~~~ 178 (194)
.++++++.|++.++.+|+.||.+|..+|||+..+|..||..|||+..||.|||+|+|.|.|+++.+..
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~~ 73 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQR 73 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHhc
Confidence 46788899999999999999999999999999999999999999999999999999999998775443
No 2
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=4.7e-20 Score=127.84 Aligned_cols=61 Identities=48% Similarity=0.796 Sum_probs=54.2
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCCCC
Q 029411 116 KGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPSED 176 (194)
Q Consensus 116 r~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~~~ 176 (194)
.++||++++.+|+.||.+|..+|||+..+|..||..|||+..||.|||+|+|.|.|+++..
T Consensus 2 ~g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 2 SGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp ----CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC--
T ss_pred CCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999998744
No 3
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=6.7e-20 Score=128.38 Aligned_cols=66 Identities=39% Similarity=0.703 Sum_probs=61.8
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCCCC
Q 029411 111 LKKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPSED 176 (194)
Q Consensus 111 ~kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~~~ 176 (194)
..+++++.|++.+..+|+.||..|..+|||+..++..||..|||+..||.+||+|+|.|.|+++.+
T Consensus 6 ~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 6 SGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 356788899999999999999999899999999999999999999999999999999999988754
No 4
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.80 E-value=2.7e-20 Score=136.21 Aligned_cols=59 Identities=42% Similarity=0.665 Sum_probs=56.4
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCC
Q 029411 116 KGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPS 174 (194)
Q Consensus 116 r~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~ 174 (194)
..-||++++.+|++||.+|..+||||+++|..||..||||.+||+|||+|+|+|.|+++
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~ 67 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDM 67 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHH
Confidence 35699999999999999999999999999999999999999999999999999999876
No 5
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.78 E-value=2.2e-19 Score=122.66 Aligned_cols=62 Identities=34% Similarity=0.540 Sum_probs=58.6
Q ss_pred hccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCC
Q 029411 112 KKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKP 173 (194)
Q Consensus 112 kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~ 173 (194)
.+++++.|++.+..+|+.||..|..+|||+..++..||..+||+..||.+||+|+|.|.|++
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 46788899999999999999988889999999999999999999999999999999999875
No 6
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.77 E-value=5.1e-19 Score=123.86 Aligned_cols=66 Identities=35% Similarity=0.585 Sum_probs=61.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCCCCcc
Q 029411 113 KKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQ 178 (194)
Q Consensus 113 krkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~~~~~ 178 (194)
+|+++.|++.+..+|+.||..|..+|||+..++..||..+||+..||.+||+|+|.|.|+......
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~~ 67 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQ 67 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccccc
Confidence 578899999999999999998888999999999999999999999999999999999998875543
No 7
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.77 E-value=7.4e-19 Score=118.57 Aligned_cols=59 Identities=25% Similarity=0.483 Sum_probs=55.8
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCC
Q 029411 115 KKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKP 173 (194)
Q Consensus 115 kr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~ 173 (194)
++++|++.+..+|+.||..|..+|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 46789999999999999998888999999999999999999999999999999998874
No 8
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.76 E-value=1.4e-18 Score=124.82 Aligned_cols=65 Identities=23% Similarity=0.402 Sum_probs=58.0
Q ss_pred hccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCCCC
Q 029411 112 KKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPSED 176 (194)
Q Consensus 112 kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~~~ 176 (194)
|++++.+|+..+..+|+.||..|..+|||+..++..||..|||+..||.+||+|+|.|.|+....
T Consensus 2 K~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~ 66 (83)
T 1le8_B 2 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIA 66 (83)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccC
Confidence 34556669999999999999998889999999999999999999999999999999999997643
No 9
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.75 E-value=2.4e-18 Score=124.45 Aligned_cols=62 Identities=26% Similarity=0.470 Sum_probs=57.7
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCC
Q 029411 111 LKKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWK 172 (194)
Q Consensus 111 ~kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk 172 (194)
.++++++.|++.++.+|+.||..|..+|||+..++..||..+||+..||.+||+|+|.|.|.
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 35677889999999999999999888899999999999999999999999999999999763
No 10
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.75 E-value=1.5e-18 Score=125.23 Aligned_cols=65 Identities=34% Similarity=0.580 Sum_probs=60.2
Q ss_pred ccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCCCCc
Q 029411 113 KKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPSEDM 177 (194)
Q Consensus 113 krkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~~~~ 177 (194)
+|+++.|++.++.+|+.||..|..+|||+..++..||..+||+..||.+||+|+|.|.|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 57889999999999999999888899999999999999999999999999999999999887443
No 11
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=3.9e-17 Score=116.26 Aligned_cols=58 Identities=19% Similarity=0.287 Sum_probs=55.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCC
Q 029411 114 KKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPS 174 (194)
Q Consensus 114 rkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~ 174 (194)
.++++|+++++.+|+.||..| |||+..++..||..|||+..||.+||+|+|.|.|+..
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~---~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQC---QWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHH
Confidence 567889999999999999999 9999999999999999999999999999999988765
No 12
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.69 E-value=4.4e-17 Score=110.04 Aligned_cols=58 Identities=28% Similarity=0.434 Sum_probs=48.2
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcC
Q 029411 111 LKKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHW 171 (194)
Q Consensus 111 ~kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~k 171 (194)
.++++++.|+..+..+|+.||..| |||+..++..||..+||+..||.+||+|+|.|.|
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~~---~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRRK---QSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhC---CCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 356788899999999999999999 9999999999999999999999999999999864
No 13
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.67 E-value=1.7e-16 Score=108.96 Aligned_cols=62 Identities=27% Similarity=0.379 Sum_probs=58.0
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCCC
Q 029411 111 LKKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPSE 175 (194)
Q Consensus 111 ~kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~~ 175 (194)
+++|++..|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.+.|+...
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAAN---PRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHC---SCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcC---CCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHhh
Confidence 357888999999999999999998 99999999999999999999999999999999988653
No 14
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.66 E-value=1.7e-16 Score=109.22 Aligned_cols=65 Identities=20% Similarity=0.364 Sum_probs=60.5
Q ss_pred ccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCCCCcccc
Q 029411 113 KKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFN 180 (194)
Q Consensus 113 krkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~~~~~~~ 180 (194)
+|++..|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.+.|+.....++.
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~~q~~ 66 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVN---CYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRESQFL 66 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCTTCCC
T ss_pred cCCCCCCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchhcccc
Confidence 5788999999999999999888 9999999999999999999999999999999999988776654
No 15
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.65 E-value=2.7e-16 Score=106.33 Aligned_cols=59 Identities=25% Similarity=0.421 Sum_probs=52.6
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCC
Q 029411 111 LKKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWK 172 (194)
Q Consensus 111 ~kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk 172 (194)
.++|++..|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.+.|+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 2 AEKRPRTAFSSEQLARLKREFNEN---RYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp -----CCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcc---CCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 357888999999999999999999 99999999999999999999999999999999876
No 16
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=5.3e-16 Score=107.69 Aligned_cols=60 Identities=22% Similarity=0.363 Sum_probs=57.0
Q ss_pred hccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCC
Q 029411 112 KKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPS 174 (194)
Q Consensus 112 kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~ 174 (194)
.++++..|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.+.|+..
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 7 GRKKRIPYSKGQLRELEREYAAN---KFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCSCCCSCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 56888899999999999999999 9999999999999999999999999999999998865
No 17
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.64 E-value=5.9e-16 Score=107.26 Aligned_cols=61 Identities=20% Similarity=0.414 Sum_probs=57.6
Q ss_pred hccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCCC
Q 029411 112 KKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPSE 175 (194)
Q Consensus 112 kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~~ 175 (194)
+++++..|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.+.|+...
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~~---~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 7 GRSSRTRFTDYQLRVLQDFFDAN---AYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHcC---CCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhccc
Confidence 56788899999999999999998 99999999999999999999999999999999988654
No 18
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2.8e-16 Score=111.54 Aligned_cols=64 Identities=17% Similarity=0.347 Sum_probs=58.9
Q ss_pred hccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCCCCcc
Q 029411 112 KKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQ 178 (194)
Q Consensus 112 kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~~~~~ 178 (194)
++|++..|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+....+.
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~ 70 (80)
T 2dmq_A 7 GKRMRTSFKHHQLRTMKSYFAIN---HNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQE 70 (80)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHHh
Confidence 57888999999999999999999 99999999999999999999999999999999988654433
No 19
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.63 E-value=4.7e-16 Score=103.94 Aligned_cols=57 Identities=19% Similarity=0.345 Sum_probs=54.0
Q ss_pred ccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCC
Q 029411 113 KKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWK 172 (194)
Q Consensus 113 krkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk 172 (194)
+|++..|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.+.|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQK---QYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHC---SCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcC---CCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 4678899999999999999999 99999999999999999999999999999998764
No 20
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=4.9e-16 Score=107.76 Aligned_cols=60 Identities=18% Similarity=0.416 Sum_probs=56.6
Q ss_pred hccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCC
Q 029411 112 KKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPS 174 (194)
Q Consensus 112 kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~ 174 (194)
.+|++..|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~~---~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 7 GRRHRTIFTDEQLEALENLFQET---KYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCHHHHHHHHHHHHcc---CCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 56888899999999999999998 9999999999999999999999999999999988754
No 21
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=6.3e-16 Score=109.92 Aligned_cols=64 Identities=16% Similarity=0.370 Sum_probs=59.7
Q ss_pred hccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCCCCcc
Q 029411 112 KKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQ 178 (194)
Q Consensus 112 kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~~~~~ 178 (194)
.+|+|..|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+....++
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~~ 70 (80)
T 2dms_A 7 GRRERTTFTRAQLDVLEALFAKT---RYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQ 70 (80)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHcc---CCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHccC
Confidence 56788899999999999999999 99999999999999999999999999999999998776554
No 22
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.62 E-value=5.8e-16 Score=104.34 Aligned_cols=58 Identities=21% Similarity=0.404 Sum_probs=54.2
Q ss_pred ccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCC
Q 029411 113 KKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKP 173 (194)
Q Consensus 113 krkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~ 173 (194)
+|++..|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.+.|+.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKE---NYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHC---SCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 4778899999999999999999 999999999999999999999999999999998763
No 23
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=7.2e-16 Score=107.00 Aligned_cols=60 Identities=27% Similarity=0.404 Sum_probs=56.8
Q ss_pred hccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCC
Q 029411 112 KKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPS 174 (194)
Q Consensus 112 kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~ 174 (194)
.++++..|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 7 GRKPRTIYSSFQLAALQRRFQKT---QYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCSSCSSCHHHHHHHHHHHTTC---SSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCHHHHHHHHHHHcCC---CCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 56888899999999999999988 9999999999999999999999999999999998865
No 24
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.62 E-value=5.6e-16 Score=105.50 Aligned_cols=59 Identities=24% Similarity=0.366 Sum_probs=54.5
Q ss_pred hccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCC
Q 029411 112 KKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKP 173 (194)
Q Consensus 112 kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~ 173 (194)
++|++..|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.+.|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFN---KYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcC---CCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 56888999999999999999999 999999999999999999999999999999998763
No 25
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.62 E-value=5.5e-16 Score=107.40 Aligned_cols=61 Identities=25% Similarity=0.460 Sum_probs=57.3
Q ss_pred hccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCCC
Q 029411 112 KKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPSE 175 (194)
Q Consensus 112 kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~~ 175 (194)
.++++..|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.+.++...
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~~---~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 7 GKRPRTRITDDQLRVLRQYFDIN---NSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp CCSCSCCCCHHHHHHHHHHHHHC---SSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 56888899999999999999999 99999999999999999999999999999999888653
No 26
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.5e-16 Score=111.99 Aligned_cols=64 Identities=13% Similarity=0.205 Sum_probs=58.8
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHc-cCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCC
Q 029411 111 LKKKKKGKLPKEARQLLLDWWSRH-HRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPS 174 (194)
Q Consensus 111 ~kkrkr~~l~k~~~~~L~~wf~~h-~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~ 174 (194)
.++|+|..|+.++..+|+.||..+ ..+|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 7 ~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 7 GALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 356788899999999999999888 6779999999999999999999999999999999998854
No 27
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.62 E-value=9.2e-16 Score=104.01 Aligned_cols=58 Identities=28% Similarity=0.382 Sum_probs=51.7
Q ss_pred hccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCC
Q 029411 112 KKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWK 172 (194)
Q Consensus 112 kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk 172 (194)
+++++..|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.+.|+
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~---~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 60 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQKQ---KYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHHC---SCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHhC---CCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhh
Confidence 56788899999999999999999 99999999999999999999999999999999876
No 28
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=5.9e-16 Score=107.43 Aligned_cols=60 Identities=22% Similarity=0.407 Sum_probs=56.0
Q ss_pred hccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCC
Q 029411 112 KKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPS 174 (194)
Q Consensus 112 kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~ 174 (194)
.++++..|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 7 ~~r~R~~ft~~q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 7 GKGGQVRFSNDQTIELEKKFETQ---KYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHcC---CCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 56788899999999999999998 9999999999999999999999999999999987653
No 29
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.61 E-value=9.6e-16 Score=101.93 Aligned_cols=57 Identities=23% Similarity=0.354 Sum_probs=53.7
Q ss_pred hccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcC
Q 029411 112 KKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHW 171 (194)
Q Consensus 112 kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~k 171 (194)
+++++..|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.+.|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQ---RYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 46788999999999999999988 9999999999999999999999999999999864
No 30
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.61 E-value=1.6e-15 Score=106.25 Aligned_cols=63 Identities=19% Similarity=0.342 Sum_probs=58.9
Q ss_pred hccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCCCCc
Q 029411 112 KKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPSEDM 177 (194)
Q Consensus 112 kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~~~~ 177 (194)
.++++..|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.+.|+....+
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (73)
T 2l7z_A 7 GRKKRVPYTKVQLKELEREYATN---KFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKL 69 (73)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHT---SCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSSS
T ss_pred CCCCCCCCCHHHHHHHHHHHhhC---CCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhccc
Confidence 56888899999999999999999 9999999999999999999999999999999999877544
No 31
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.6e-15 Score=107.90 Aligned_cols=61 Identities=26% Similarity=0.455 Sum_probs=57.2
Q ss_pred hccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCCC
Q 029411 112 KKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPSE 175 (194)
Q Consensus 112 kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~~ 175 (194)
.+|++..|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 17 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 17 GRRSRTVFTELQLMGLEKRFEKQ---KYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCSCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 46788899999999999999999 99999999999999999999999999999999988653
No 32
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.60 E-value=7.5e-16 Score=109.08 Aligned_cols=61 Identities=21% Similarity=0.381 Sum_probs=57.1
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCC
Q 029411 111 LKKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPS 174 (194)
Q Consensus 111 ~kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~ 174 (194)
.++|+|..|+.++..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~f~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 16 RDKRLRTTITPEQLEILYQKYLLD---SNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCTTCCSSCCTTTHHHHHHHHHHC---SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 356788899999999999999999 9999999999999999999999999999999988754
No 33
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.60 E-value=1.3e-15 Score=105.30 Aligned_cols=62 Identities=23% Similarity=0.389 Sum_probs=58.0
Q ss_pred hccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCCCC
Q 029411 112 KKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPSED 176 (194)
Q Consensus 112 kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~~~ 176 (194)
+++++..|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.+.++....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~ 63 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQ---KYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 63 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHS---SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCccCHHHHHHHHHHHHhC---CCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhH
Confidence 56788899999999999999999 999999999999999999999999999999999887644
No 34
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.60 E-value=1e-15 Score=109.04 Aligned_cols=60 Identities=25% Similarity=0.407 Sum_probs=56.0
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCC
Q 029411 111 LKKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKP 173 (194)
Q Consensus 111 ~kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~ 173 (194)
.+++++..|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 17 ~~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~ 76 (81)
T 1fjl_A 17 KQRRSRTTFSASQLDELERAFERT---QYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQ 76 (81)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhh
Confidence 356788899999999999999998 999999999999999999999999999999998763
No 35
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=4.2e-15 Score=104.76 Aligned_cols=63 Identities=21% Similarity=0.365 Sum_probs=57.6
Q ss_pred ccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCCCCcc
Q 029411 113 KKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQ 178 (194)
Q Consensus 113 krkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~~~~~ 178 (194)
.+.+..|++.+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+.....+
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~---~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~~~ 71 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRN---QFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGSRS 71 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHS---SSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSSSC
T ss_pred CCCCccCCHHHHHHHHHHHhcC---CCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcccCC
Confidence 3557899999999999999999 99999999999999999999999999999999998765443
No 36
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.59 E-value=1.1e-15 Score=105.63 Aligned_cols=60 Identities=20% Similarity=0.361 Sum_probs=56.9
Q ss_pred hccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCC
Q 029411 112 KKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPS 174 (194)
Q Consensus 112 kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~ 174 (194)
++|++..|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.+.++..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFN---RYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHC---SSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHHccC---CCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 56888999999999999999999 9999999999999999999999999999999988765
No 37
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.59 E-value=2.6e-15 Score=101.14 Aligned_cols=56 Identities=27% Similarity=0.367 Sum_probs=50.0
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCC
Q 029411 115 KKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKP 173 (194)
Q Consensus 115 kr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~ 173 (194)
.|..|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.+.|+.
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 57 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRT---HYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC--
T ss_pred CCcccCHHHHHHHHHHHHcC---CCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhh
Confidence 35789999999999999998 999999999999999999999999999999998874
No 38
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=8e-16 Score=109.48 Aligned_cols=62 Identities=21% Similarity=0.377 Sum_probs=57.6
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCCC
Q 029411 111 LKKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPSE 175 (194)
Q Consensus 111 ~kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~~ 175 (194)
..+|+|..|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.+.|+...
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFERT---HYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 67 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHTTC---SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCHHHHHHHHHHHhcc---CCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhh
Confidence 356888999999999999999988 99999999999999999999999999999999888653
No 39
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.58 E-value=2.4e-15 Score=106.24 Aligned_cols=60 Identities=25% Similarity=0.389 Sum_probs=56.0
Q ss_pred hccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCC
Q 029411 112 KKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPS 174 (194)
Q Consensus 112 kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~ 174 (194)
+++++..|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.+.|+..
T Consensus 9 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~ 68 (77)
T 1nk2_P 9 KRKRRVLFTKAQTYELERRFRQQ---RYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQ 68 (77)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHC---SCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhh
Confidence 56778899999999999999999 9999999999999999999999999999999987643
No 40
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.57 E-value=2.1e-15 Score=104.21 Aligned_cols=60 Identities=22% Similarity=0.383 Sum_probs=56.4
Q ss_pred hccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCC
Q 029411 112 KKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPS 174 (194)
Q Consensus 112 kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~ 174 (194)
.++++..|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~ 61 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQG---RYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQS 61 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTC---SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcC---CCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHh
Confidence 46788999999999999999988 9999999999999999999999999999999988754
No 41
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.57 E-value=6.9e-16 Score=106.54 Aligned_cols=61 Identities=23% Similarity=0.436 Sum_probs=57.0
Q ss_pred hccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCCC
Q 029411 112 KKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPSE 175 (194)
Q Consensus 112 kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~~ 175 (194)
+++++..|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.+.++...
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQRN---RYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTTC---SSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHcc---CCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 57888999999999999999998 99999999999999999999999999999999887654
No 42
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.57 E-value=3.9e-15 Score=106.44 Aligned_cols=63 Identities=16% Similarity=0.318 Sum_probs=56.7
Q ss_pred hhccCCCCCCHHHHHHHHHHHHH-ccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCC
Q 029411 111 LKKKKKGKLPKEARQLLLDWWSR-HHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKP 173 (194)
Q Consensus 111 ~kkrkr~~l~k~~~~~L~~wf~~-h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~ 173 (194)
.++|+|+.|+.+++..|+.+|.. ++++|||+..++..||..+||++.||.+||+|+|.+.++.
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~~ 79 (80)
T 1wh5_A 16 IRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPSS 79 (80)
T ss_dssp CSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSCC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCCC
Confidence 35788889999999999999997 3444999999999999999999999999999999998764
No 43
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.57 E-value=6.8e-15 Score=105.26 Aligned_cols=61 Identities=28% Similarity=0.358 Sum_probs=57.2
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCC
Q 029411 111 LKKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPS 174 (194)
Q Consensus 111 ~kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~ 174 (194)
.++|+|+.|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.+.|+..
T Consensus 21 ~~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 21 KKQKTRTVFSSTQLCVLNDRFQRQ---KYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CSCCCSSCCCHHHHHHHHHHHHHS---SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhC---CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 356888899999999999999999 9999999999999999999999999999999988764
No 44
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.57 E-value=3.8e-15 Score=118.92 Aligned_cols=63 Identities=21% Similarity=0.347 Sum_probs=54.8
Q ss_pred hhhccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCCC
Q 029411 110 FLKKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPSE 175 (194)
Q Consensus 110 ~~kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~~ 175 (194)
..++|+|+.|+..+..+|+.||..| |||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~~~---~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFKEN---KRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence 3457888999999999999999999 99999999999999999999999999999999988653
No 45
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=1.1e-14 Score=106.31 Aligned_cols=61 Identities=20% Similarity=0.293 Sum_probs=54.6
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCCCCcc
Q 029411 115 KKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQ 178 (194)
Q Consensus 115 kr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~~~~~ 178 (194)
+...|+.++..+|+.+|..+ +||+..++..||..|||+..||.+||+|+|.|.++....+.
T Consensus 14 k~k~~t~~Ql~~Le~~F~~~---~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~~~ 74 (89)
T 2ecb_A 14 KFKEKTAEQLRVLQASFLNS---SVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKME 74 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCCC
T ss_pred hhccCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHHhh
Confidence 33489999999999999999 99999999999999999999999999999988777654444
No 46
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.56 E-value=6.7e-15 Score=102.83 Aligned_cols=61 Identities=21% Similarity=0.365 Sum_probs=57.1
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCC
Q 029411 111 LKKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPS 174 (194)
Q Consensus 111 ~kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~ 174 (194)
.+++.+..|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.+.++..
T Consensus 8 ~~rr~Rt~ft~~q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 8 KKRRNRTTFTSYQLEELEKVFQKT---HYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp CCCSCSCSSCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 356778899999999999999999 9999999999999999999999999999999988865
No 47
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.56 E-value=5.1e-15 Score=104.56 Aligned_cols=59 Identities=22% Similarity=0.305 Sum_probs=55.6
Q ss_pred hccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCC
Q 029411 112 KKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKP 173 (194)
Q Consensus 112 kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~ 173 (194)
.++++..|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.+.++.
T Consensus 13 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 71 (77)
T 1puf_A 13 TRKKRCPYTKHQTLELEKEFLFN---MYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 71 (77)
T ss_dssp TSCCCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHhcc---CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 56788899999999999999999 999999999999999999999999999999998764
No 48
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.55 E-value=7.1e-15 Score=104.94 Aligned_cols=61 Identities=20% Similarity=0.369 Sum_probs=53.9
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCC
Q 029411 111 LKKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPS 174 (194)
Q Consensus 111 ~kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~ 174 (194)
.++|+++.|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~~---~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHTN---HYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCcccCHHHHHHHHHHHhcC---CCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 357888999999999999999999 9999999999999999999999999999999988754
No 49
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=3.1e-15 Score=109.70 Aligned_cols=63 Identities=19% Similarity=0.399 Sum_probs=58.2
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhC---------------CChHHHhhhhHHHHhhcCCCCC
Q 029411 111 LKKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTG---------------LDQKQINNWFINQRKRHWKPSE 175 (194)
Q Consensus 111 ~kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tg---------------Lt~~QV~nWF~N~R~R~kk~~~ 175 (194)
+++|.|..|++.+..+|+.||..+ |||+..++..||..+| |+..||.+||+|+|.+.|+...
T Consensus 6 ~~rr~R~~ft~~ql~~Le~~F~~~---~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 6 SGRGSRFTWRKECLAVMESYFNEN---QYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp CCCCCSCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 356788899999999999999998 9999999999999999 9999999999999999988664
Q ss_pred C
Q 029411 176 D 176 (194)
Q Consensus 176 ~ 176 (194)
.
T Consensus 83 ~ 83 (95)
T 2cuf_A 83 I 83 (95)
T ss_dssp C
T ss_pred c
Confidence 3
No 50
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.55 E-value=5.9e-15 Score=98.25 Aligned_cols=53 Identities=21% Similarity=0.414 Sum_probs=49.3
Q ss_pred CCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCC
Q 029411 117 GKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWK 172 (194)
Q Consensus 117 ~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk 172 (194)
+.|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 2 T~ft~~Ql~~Le~~F~~~---~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr 54 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQ---KYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 54 (56)
T ss_dssp --CCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhc---CCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhcc
Confidence 368999999999999999 99999999999999999999999999999999876
No 51
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.55 E-value=6.1e-15 Score=102.80 Aligned_cols=58 Identities=14% Similarity=0.322 Sum_probs=54.5
Q ss_pred cCCCCCCHHHHHHHHHHHHH-ccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCC
Q 029411 114 KKKGKLPKEARQLLLDWWSR-HHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPS 174 (194)
Q Consensus 114 rkr~~l~k~~~~~L~~wf~~-h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~ 174 (194)
+++..|+..+..+|+.+|.. + |||+..++..||..+||+..||.+||+|+|.+.|+..
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~~~---~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNKVN---KHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHSSC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHccC---CCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 57789999999999999996 8 9999999999999999999999999999999988755
No 52
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.54 E-value=4e-15 Score=108.96 Aligned_cols=63 Identities=19% Similarity=0.404 Sum_probs=58.4
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCCCC
Q 029411 111 LKKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPSED 176 (194)
Q Consensus 111 ~kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~~~ 176 (194)
.++++++.|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+....
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~F~~~---~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 78 (93)
T 3a01_A 16 KRKKPRTSFTRIQVAELEKRFHKQ---KYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAE 78 (93)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHC---SCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHcC---CCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHH
Confidence 457788899999999999999999 999999999999999999999999999999998887643
No 53
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.54 E-value=8.4e-15 Score=102.45 Aligned_cols=59 Identities=14% Similarity=0.280 Sum_probs=54.9
Q ss_pred ccCCCCCCHHHHHHHHHHHHH-ccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCC
Q 029411 113 KKKKGKLPKEARQLLLDWWSR-HHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPS 174 (194)
Q Consensus 113 krkr~~l~k~~~~~L~~wf~~-h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~ 174 (194)
.+++..|+..+..+|+.+|.. + |||+..++..||..+||+..||.+||+|+|.+.|+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~---~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVN---KHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTT---SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 467789999999999999995 8 9999999999999999999999999999999988755
No 54
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.53 E-value=3.2e-14 Score=99.41 Aligned_cols=62 Identities=21% Similarity=0.375 Sum_probs=57.3
Q ss_pred hccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCCCC
Q 029411 112 KKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPSED 176 (194)
Q Consensus 112 kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~~~ 176 (194)
.++.|..|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.+.|+....
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 67 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKN---QFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSN 67 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCS
T ss_pred CCCCCcCCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcC
Confidence 35778899999999999999998 999999999999999999999999999999998886543
No 55
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.1e-14 Score=102.48 Aligned_cols=59 Identities=20% Similarity=0.360 Sum_probs=55.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCCC
Q 029411 114 KKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPSE 175 (194)
Q Consensus 114 rkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~~ 175 (194)
+++.+|+.++..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.+.++...
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~---~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQN---PLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCccCCHHHHHHHHHHHhcc---CCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 566779999999999999999 99999999999999999999999999999999887653
No 56
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.52 E-value=1e-14 Score=100.97 Aligned_cols=51 Identities=27% Similarity=0.477 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCC
Q 029411 119 LPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWK 172 (194)
Q Consensus 119 l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk 172 (194)
-++++...|+..|..+ |||+..++..||..|||+..||.+||+|+|.+.|+
T Consensus 11 ~~~~Ql~~LE~~F~~~---~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kk 61 (66)
T 3nau_A 11 KTKEQIAHLKASFLQS---QFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQR 61 (66)
T ss_dssp CCHHHHHHHHHHHHGG---GSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcC---CCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhc
Confidence 4789999999999999 99999999999999999999999999999998764
No 57
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.52 E-value=1.6e-14 Score=114.20 Aligned_cols=59 Identities=20% Similarity=0.456 Sum_probs=55.5
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCC
Q 029411 111 LKKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWK 172 (194)
Q Consensus 111 ~kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk 172 (194)
.++|+|..|+..+..+|+.||..+ |||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 92 ~~rr~Rt~ft~~q~~~Le~~F~~~---~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 92 KKRKRRTSFTPQAIEALNAYFEKN---PLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcccCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 356778899999999999999998 99999999999999999999999999999999876
No 58
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.52 E-value=1.4e-14 Score=104.72 Aligned_cols=60 Identities=20% Similarity=0.340 Sum_probs=53.9
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCC
Q 029411 111 LKKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKP 173 (194)
Q Consensus 111 ~kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~ 173 (194)
..+|+|..|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.+.|+.
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFHFN---RYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTC---SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcc---CCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 457888999999999999999988 999999999999999999999999999999998874
No 59
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=4.5e-14 Score=102.64 Aligned_cols=58 Identities=21% Similarity=0.358 Sum_probs=53.0
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCCC
Q 029411 115 KKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPSE 175 (194)
Q Consensus 115 kr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~~ 175 (194)
+..+++.++..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.++...
T Consensus 16 k~k~~t~~Ql~~Le~~F~~~---~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLKS---SFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQ 73 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCS
T ss_pred ccccCCHHHHHHHHHHHccC---CCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhH
Confidence 44459999999999999999 99999999999999999999999999999999876553
No 60
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.50 E-value=3.4e-14 Score=104.45 Aligned_cols=60 Identities=25% Similarity=0.330 Sum_probs=55.4
Q ss_pred hccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCC
Q 029411 112 KKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPS 174 (194)
Q Consensus 112 kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~ 174 (194)
.+++|..|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.+.|+..
T Consensus 25 ~~r~Rt~ft~~Ql~~Le~~F~~~---~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 25 STGKICKKTPEQLHMLKSAFVRT---QWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp --CCSSSSCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCccCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 45788899999999999999998 9999999999999999999999999999999998864
No 61
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.50 E-value=2e-14 Score=105.75 Aligned_cols=60 Identities=18% Similarity=0.299 Sum_probs=53.6
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCC
Q 029411 111 LKKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKP 173 (194)
Q Consensus 111 ~kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~ 173 (194)
..+++|+.|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.+.|+.
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~~---~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 92 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHFN---KYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKR 92 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCcCHHHHHHHHHHHhcc---CCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHH
Confidence 456788999999999999999988 999999999999999999999999999999998764
No 62
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.47 E-value=4.1e-14 Score=101.26 Aligned_cols=62 Identities=13% Similarity=0.228 Sum_probs=54.8
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHccC--CCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCC
Q 029411 111 LKKKKKGKLPKEARQLLLDWWSRHHR--WPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKP 173 (194)
Q Consensus 111 ~kkrkr~~l~k~~~~~L~~wf~~h~~--~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~ 173 (194)
.++|+|+.|+.+++..|+ -|..+.. +|||+..++..||..+||++.||.+||+|+|.+.++.
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~s 79 (80)
T 1wh7_A 16 TTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPSS 79 (80)
T ss_dssp CSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCCC
T ss_pred CCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCCC
Confidence 357888899999999999 5888322 4999999999999999999999999999999998764
No 63
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1e-13 Score=95.15 Aligned_cols=55 Identities=18% Similarity=0.283 Sum_probs=51.0
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCC
Q 029411 115 KKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWK 172 (194)
Q Consensus 115 kr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk 172 (194)
...++.+++..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.++
T Consensus 6 ~~~~p~~~Ql~~Le~~F~~~---~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 6 SGQPPLKNLLSLLKAYYALN---AQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp SCCCCCHHHHHHHHHHHTTC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCCCccHHHHHHHHHHHhcC---CCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 34567899999999999888 99999999999999999999999999999999876
No 64
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.46 E-value=1.1e-13 Score=109.05 Aligned_cols=60 Identities=25% Similarity=0.495 Sum_probs=54.7
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCC
Q 029411 111 LKKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKP 173 (194)
Q Consensus 111 ~kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~ 173 (194)
.++|+|+.|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 86 ~~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 86 RKRKRRTTISIAAKDALERHFGEH---SKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCcCccHHHHHHHHHHHHHc---CCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 456778899999999999999999 999999999999999999999999999999998874
No 65
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.46 E-value=1.1e-13 Score=110.53 Aligned_cols=60 Identities=20% Similarity=0.381 Sum_probs=54.3
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCC
Q 029411 111 LKKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKP 173 (194)
Q Consensus 111 ~kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~ 173 (194)
.++|+|+.|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFMEN---QKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCcCccccCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 467888999999999999999999 999999999999999999999999999999998875
No 66
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.45 E-value=1.9e-13 Score=95.23 Aligned_cols=61 Identities=21% Similarity=0.276 Sum_probs=57.3
Q ss_pred hhccCCCCCCHHHHHHHHHHHHH-ccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCC
Q 029411 111 LKKKKKGKLPKEARQLLLDWWSR-HHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPS 174 (194)
Q Consensus 111 ~kkrkr~~l~k~~~~~L~~wf~~-h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~ 174 (194)
.+||.|+.|+.++..+|+..|.. + |||+.+.++.||.+|||++.+|..||+|+|.-.+.+.
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~~---~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~~~ 67 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDVG---LYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHSG 67 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHHC---SCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecCCC
Confidence 46788999999999999999999 8 9999999999999999999999999999999887665
No 67
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.43 E-value=1.7e-13 Score=110.07 Aligned_cols=62 Identities=24% Similarity=0.429 Sum_probs=51.9
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCCC
Q 029411 111 LKKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPSE 175 (194)
Q Consensus 111 ~kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~~ 175 (194)
.++|+|+.|+..+..+|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 98 ~~rr~Rt~ft~~Ql~~LE~~F~~~---~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 98 RKRKKRTSIEVGVKGALESHFLKC---PKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp --------CCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred cCCCCceeccHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 457788899999999999999999 99999999999999999999999999999999988654
No 68
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=7.2e-14 Score=104.43 Aligned_cols=62 Identities=24% Similarity=0.380 Sum_probs=57.1
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHh---------------------CCChHHHhhhhHHHHhh
Q 029411 111 LKKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAEST---------------------GLDQKQINNWFINQRKR 169 (194)
Q Consensus 111 ~kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~t---------------------gLt~~QV~nWF~N~R~R 169 (194)
.++|.|..|++.+..+|+.+|..+ |||+..+++.||..+ +|+..+|.|||+|+|.+
T Consensus 5 ~~Rr~Rt~ft~~ql~~Le~~F~~~---~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 5 SSGRNRFKWGPASQQILYQAYDRQ---KNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHTTC---SSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHcCC---CCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 357788899999999999999999 999999999999999 79999999999999999
Q ss_pred cCCCCC
Q 029411 170 HWKPSE 175 (194)
Q Consensus 170 ~kk~~~ 175 (194)
.++...
T Consensus 82 ~kr~~~ 87 (102)
T 2da6_A 82 EAFRQK 87 (102)
T ss_dssp HHHHHH
T ss_pred HHHhhH
Confidence 887653
No 69
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.43 E-value=3.8e-13 Score=93.77 Aligned_cols=55 Identities=24% Similarity=0.370 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCCC
Q 029411 118 KLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPSE 175 (194)
Q Consensus 118 ~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~~ 175 (194)
.++..+...|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 10 ~~t~~ql~~LE~~F~~~---~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQ---KYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCHHHHHHHHHHHHHC---SCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred cCCHHHHHHHHHHHhcC---CCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 56788999999999999 99999999999999999999999999999999887653
No 70
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.42 E-value=1.4e-13 Score=96.52 Aligned_cols=58 Identities=21% Similarity=0.312 Sum_probs=52.7
Q ss_pred cCCCCCCHHHHHHHHHHH-HHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCC
Q 029411 114 KKKGKLPKEARQLLLDWW-SRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPS 174 (194)
Q Consensus 114 rkr~~l~k~~~~~L~~wf-~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~ 174 (194)
+++..++.++..+|+..| ..+ +||+..++..||..+||+..||.+||+|+|.+.|+..
T Consensus 10 k~r~r~~~~ql~~LE~~F~~~~---~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 10 KDSPVNKVEPNDTLEKVFVSVT---KYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCSCSCSTTHHHHHHHHTC---SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCHHHHHHHHHHHHhcC---CCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 556677888999999999 788 9999999999999999999999999999999987654
No 71
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.41 E-value=3.1e-13 Score=100.41 Aligned_cols=61 Identities=25% Similarity=0.446 Sum_probs=53.0
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHH------------------hC---CChHHHhhhhHHHHhh
Q 029411 111 LKKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAES------------------TG---LDQKQINNWFINQRKR 169 (194)
Q Consensus 111 ~kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~------------------tg---Lt~~QV~nWF~N~R~R 169 (194)
+++|+|..|++.+..+|+.+|..+ |||+..+++.||.. +| |+..||.+||+|+|.+
T Consensus 8 k~rr~Rt~ft~~Ql~~LE~~F~~~---~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 8 KGRRNRFKWGPASQQILFQAYERQ---KNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp -----CCCCCHHHHHHHHHHHTTC---SSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCcCcCHHHHHHHHHHHhcC---CCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 457788899999999999999998 99999999999999 88 9999999999999998
Q ss_pred cCCCC
Q 029411 170 HWKPS 174 (194)
Q Consensus 170 ~kk~~ 174 (194)
.+...
T Consensus 85 ~k~k~ 89 (99)
T 1lfb_A 85 EAFRH 89 (99)
T ss_dssp TSCCC
T ss_pred HHHhc
Confidence 87655
No 72
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.38 E-value=2.6e-13 Score=107.86 Aligned_cols=60 Identities=25% Similarity=0.460 Sum_probs=55.7
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCC
Q 029411 111 LKKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKP 173 (194)
Q Consensus 111 ~kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~ 173 (194)
.++|+|..|+..+...|+.+|..+ |||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~~---~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLKS---PKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTTC---SCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHHccC---CCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 457788899999999999999888 999999999999999999999999999999998874
No 73
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.33 E-value=1.6e-12 Score=89.55 Aligned_cols=50 Identities=18% Similarity=0.352 Sum_probs=44.9
Q ss_pred HHHHHHHHHHH-HccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCC
Q 029411 122 EARQLLLDWWS-RHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPS 174 (194)
Q Consensus 122 ~~~~~L~~wf~-~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~ 174 (194)
.+..+|+..|. .+ +||+..++..||.++||+..||.+||+|+|.+.|+..
T Consensus 10 ~~~~~LE~~F~~~~---~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~ 60 (64)
T 1x2m_A 10 QPNAILEKVFTAIT---KHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSG 60 (64)
T ss_dssp CHHHHHHHHHHTTC---SSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSS
T ss_pred hHHHHHHHHHHHcC---CCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCC
Confidence 36899999995 46 9999999999999999999999999999999987543
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.25 E-value=7.2e-12 Score=105.02 Aligned_cols=56 Identities=27% Similarity=0.513 Sum_probs=52.3
Q ss_pred hccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhC---------------------CChHHHhhhhHHHHhhc
Q 029411 112 KKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTG---------------------LDQKQINNWFINQRKRH 170 (194)
Q Consensus 112 kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tg---------------------Lt~~QV~nWF~N~R~R~ 170 (194)
++|.|..|++.+..+|+.||..+ |||+..+|+.||..|| ||..||.|||+|+|++.
T Consensus 142 ~RR~R~~ft~~ql~~Le~~F~~~---~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 142 MRRNRFKWGPASQQILYQAYDRQ---KNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 46777899999999999999998 9999999999999988 89999999999999875
No 75
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.23 E-value=5.1e-12 Score=104.16 Aligned_cols=59 Identities=24% Similarity=0.437 Sum_probs=53.1
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhC---------------------CChHHHhhhhHHHHhh
Q 029411 111 LKKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTG---------------------LDQKQINNWFINQRKR 169 (194)
Q Consensus 111 ~kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tg---------------------Lt~~QV~nWF~N~R~R 169 (194)
+++|.|..|++.+..+|+.+|..+ |||+..+|+.||..+| ||..||.|||+|+|++
T Consensus 114 k~rr~R~~ft~~ql~~Le~~F~~~---~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 114 KGRRNRFKWGPASQQILFQAYERQ---KNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHH---CCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred cCCCCCcccCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 346778899999999999999999 9999999999999999 9999999999999998
Q ss_pred cCC
Q 029411 170 HWK 172 (194)
Q Consensus 170 ~kk 172 (194)
.+.
T Consensus 191 ~k~ 193 (194)
T 1ic8_A 191 EAF 193 (194)
T ss_dssp CC-
T ss_pred hhc
Confidence 764
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.23 E-value=6.5e-12 Score=110.15 Aligned_cols=56 Identities=25% Similarity=0.414 Sum_probs=52.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcC
Q 029411 113 KKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHW 171 (194)
Q Consensus 113 krkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~k 171 (194)
++.+..|...++..|+..|..| |||+..+|..||.+|||+.+||++||+|+|+|.|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~---~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRK---QSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHC---SCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcC---CCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 4556789999999999999999 9999999999999999999999999999999875
No 77
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=6.1e-11 Score=82.84 Aligned_cols=47 Identities=19% Similarity=0.436 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhc
Q 029411 121 KEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRH 170 (194)
Q Consensus 121 k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~ 170 (194)
++++.+|+.+|..| |+|+.+++..||..+||+.+.|..||+|+|.+.
T Consensus 14 k~ql~~Lk~yF~~n---~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~ 60 (71)
T 2da7_A 14 KDHMSVLKAYYAMN---MEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQ 60 (71)
T ss_dssp THHHHHHHHHHHHC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC---CCCCHHHHHHHHHHhCCCHHHHHHHHhhccccc
Confidence 67899999999999 999999999999999999999999999999753
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=97.02 E-value=5.1e-05 Score=46.47 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=18.2
Q ss_pred HHHhhhhHHHHhhcCCCCCCcc
Q 029411 157 KQINNWFINQRKRHWKPSEDMQ 178 (194)
Q Consensus 157 ~QV~nWF~N~R~R~kk~~~~~~ 178 (194)
.||.+||+|+|.+.|+....+.
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~ 22 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDA 22 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHT
T ss_pred CCceeccHHHHHHHHHHhHHHH
Confidence 4899999999999988775444
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.88 E-value=0.00062 Score=47.16 Aligned_cols=45 Identities=24% Similarity=0.463 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHH
Q 029411 119 LPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQ 166 (194)
Q Consensus 119 l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~ 166 (194)
.++..+++|.++|..| -...+++-..|+.+++|+..||..||.-+
T Consensus 13 ~~p~~~e~L~~Yy~~h---k~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 13 PPPPDIQPLERYWAAH---QQLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp CCCCCCHHHHHHHHHT---CCCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHh---cccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 3455689999999999 99999999999999999999999999753
No 80
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=89.23 E-value=1.1 Score=32.46 Aligned_cols=49 Identities=12% Similarity=0.177 Sum_probs=39.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHh
Q 029411 114 KKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRK 168 (194)
Q Consensus 114 rkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~ 168 (194)
+++..|+.+.+..+..++..+ +.++. ..+|+..|++...|.+|..++..
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~---g~~~~---~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEEN---PDLRK---GEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHC---TTSCH---HHHHHHHTCCHHHHHHHHHTHHH
T ss_pred CcceeCCHHHHHHHHHHHHHC---CCCcH---HHHHHHhCCCHHHHHHHHhchhh
Confidence 356789999988777777777 76653 35889999999999999988765
No 81
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=86.07 E-value=1.5 Score=27.81 Aligned_cols=47 Identities=13% Similarity=0.274 Sum_probs=32.2
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHH
Q 029411 116 KGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQ 166 (194)
Q Consensus 116 r~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~ 166 (194)
+.+++.+.+......+... ++.......+|..+|++..+|.+|....
T Consensus 3 r~~ys~efK~~~~~~~~~g----~s~~~~~~~vA~~~gIs~~tl~~W~~~~ 49 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND----NDCKGNQRATARKYNIHRRQIQKWLQCE 49 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC----TTTTTCHHHHHHHTTSCHHHHHHHHTTH
T ss_pred CCcCCHHHHHHHHHHHHcC----CCcchHHHHHHHHHCcCHHHHHHHHHHH
Confidence 4578888876555554443 2211225689999999999999996543
No 82
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=84.44 E-value=1.7 Score=30.39 Aligned_cols=63 Identities=17% Similarity=0.135 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCC--CCcccccccccCCC
Q 029411 117 GKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPS--EDMQFNDISIMNGP 188 (194)
Q Consensus 117 ~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~--~~~~~~~~~~~~~~ 188 (194)
..||+..+++|.-. .+. + .-.++|..+|++...|.++..+.+++.+... +-..++.-.|...+
T Consensus 26 ~~Lt~~e~~vl~l~-~~g----~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l~~~a~~~gl~~~ 90 (95)
T 3c57_A 26 SGLTDQERTLLGLL-SEG----L----TNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFATELKRSRP 90 (95)
T ss_dssp -CCCHHHHHHHHHH-HTT----C----CHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCCC-------------
T ss_pred hcCCHHHHHHHHHH-HcC----C----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCC
Confidence 35888999999875 333 2 2368999999999999999999999998876 44444444444333
No 83
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=81.89 E-value=2.5 Score=28.93 Aligned_cols=46 Identities=13% Similarity=0.244 Sum_probs=32.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHH
Q 029411 114 KKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQR 167 (194)
Q Consensus 114 rkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R 167 (194)
+++.+++.+.+......+... . ....+|+.+|++...|.+|....+
T Consensus 18 ~~~~~ys~e~k~~~v~~~~~g----~----s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 18 RPLRSLTPRDKIHAIQRIHDG----E----SKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp SCCSSCCHHHHHHHHHHHHHT----C----CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCC----C----CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456688988865554555432 2 255889999999999999986544
No 84
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=80.88 E-value=1.5 Score=28.05 Aligned_cols=51 Identities=18% Similarity=0.079 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCCC
Q 029411 117 GKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPSE 175 (194)
Q Consensus 117 ~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~~ 175 (194)
..||+..+.+|.-.|... + .-.++|..+|++...|.++....+++.++...
T Consensus 14 ~~L~~~~r~il~l~~~~g----~----s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~ 64 (70)
T 2o8x_A 14 ADLTTDQREALLLTQLLG----L----SYADAAAVCGCPVGTIRSRVARARDALLADAE 64 (70)
T ss_dssp TSSCHHHHHHHHHHHTSC----C----CHHHHHHHHTSCHHHHHHHHHHHHHHHHC---
T ss_pred HhCCHHHHHHHHHHHHcC----C----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhh
Confidence 358888999988766544 2 23578999999999999999999999887653
No 85
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=80.03 E-value=1.2 Score=30.75 Aligned_cols=49 Identities=12% Similarity=0.163 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCC
Q 029411 118 KLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPS 174 (194)
Q Consensus 118 ~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~ 174 (194)
.||...+.+|.-.|...+ .-.++|..+|++...|.++....|++.++..
T Consensus 37 ~L~~~~r~vl~l~~~~g~--------s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW--------STAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC--------CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 588889999987665552 2457899999999999999999999987643
No 86
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=79.54 E-value=2.2 Score=24.72 Aligned_cols=42 Identities=10% Similarity=0.023 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHH
Q 029411 117 GKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQ 166 (194)
Q Consensus 117 ~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~ 166 (194)
..++.+.+..+...+... + ....+|+.+|++...|.+|....
T Consensus 4 ~~l~~~~~~~i~~~~~~g----~----s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLLN----V----SLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp CCCCHHHHHHHHHHHHTT----C----CHHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHHHcC----C----CHHHHHHHHCcCHHHHHHHHhhH
Confidence 357777765444444433 2 25578999999999999998543
No 87
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=79.05 E-value=2.6 Score=27.25 Aligned_cols=55 Identities=11% Similarity=0.125 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCCCC
Q 029411 118 KLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPSED 176 (194)
Q Consensus 118 ~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~~~ 176 (194)
.||+..+.+|...|.-+-...+ .-.++|..+|++...|.++....+++.++....
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~----s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~~ 59 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDY----TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS 59 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHGGGSCCGG
T ss_pred cCCHHHHHHHHHHHccCCCCCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 5888899998777621100022 235789999999999999999999999987643
No 88
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=78.79 E-value=2.6 Score=28.76 Aligned_cols=56 Identities=11% Similarity=0.106 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCCCCc
Q 029411 118 KLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPSEDM 177 (194)
Q Consensus 118 ~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~~~~ 177 (194)
.||+..+.+|...|.-.-..++ .-..+|..+|++...|.++....+++.++.....
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~----s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l~~~ 73 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPK----TLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSK 73 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSSH
T ss_pred hCCHHHHHHHHHHHccCCCCCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 5889999999877651000022 2357899999999999999999999999877543
No 89
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=77.04 E-value=2.6 Score=27.66 Aligned_cols=55 Identities=11% Similarity=-0.008 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcC-CCCC
Q 029411 117 GKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHW-KPSE 175 (194)
Q Consensus 117 ~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~k-k~~~ 175 (194)
..||+..+.+|...|.-.-..++ .-.++|..+|++...|.++....+++.+ ....
T Consensus 9 ~~L~~~er~il~l~~~l~~~~~~----s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~~ 64 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDGREH----TLEEVGAYFGVTRERIRQIENKALRKLKYHESR 64 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC-
T ss_pred HhCCHHHHHHHHHHHhcccCCCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHhhHhh
Confidence 35899999999877651000022 2247899999999999999999999998 6553
No 90
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=73.05 E-value=2.4 Score=27.79 Aligned_cols=47 Identities=17% Similarity=0.160 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCC
Q 029411 119 LPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPS 174 (194)
Q Consensus 119 l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~ 174 (194)
||+..+.+|.-+ .. .++ -.++|..+|++...|.++..+.+++.+...
T Consensus 17 L~~~e~~vl~l~-~~----g~s----~~eIA~~l~is~~tV~~~~~r~~~kl~~~~ 63 (79)
T 1x3u_A 17 LSERERQVLSAV-VA----GLP----NKSIAYDLDISPRTVEVHRANVMAKMKAKS 63 (79)
T ss_dssp HCHHHHHHHHHH-TT----TCC----HHHHHHHTTSCHHHHHHHHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHH-Hc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 677788888764 22 222 247999999999999999999999998876
No 91
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=73.01 E-value=2.1 Score=31.16 Aligned_cols=48 Identities=21% Similarity=0.202 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCC
Q 029411 118 KLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPS 174 (194)
Q Consensus 118 ~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~ 174 (194)
.||+..+.++. .|... | .-.++|..+|++...|.++....|++.++..
T Consensus 109 ~L~~~~r~v~~-~~~~g----~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l 156 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRG----Y----SYREIATILSKNLKSIDNTIQRIRKKSEEWI 156 (164)
T ss_dssp HSCHHHHHHHH-HHTTT----C----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcC----C----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 47888999998 44433 2 3357899999999999999999999987644
No 92
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=69.95 E-value=5.9 Score=26.68 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCC
Q 029411 118 KLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPS 174 (194)
Q Consensus 118 ~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~ 174 (194)
.|++..+++|.-+ .. .+ .-.++|..+|++...|.++..+.+++.+...
T Consensus 21 ~Lt~~e~~vl~l~-~~----g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 68 (82)
T 1je8_A 21 QLTPRERDILKLI-AQ----GL----PNKMIARRLDITESTVKVHVKHMLKKMKLKS 68 (82)
T ss_dssp GSCHHHHHHHHHH-TT----TC----CHHHHHHHHTSCHHHHHHHHHHHHHHTTCSS
T ss_pred cCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 5888888988764 22 22 3457899999999999999999999988765
No 93
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=69.55 E-value=3.6 Score=29.94 Aligned_cols=49 Identities=10% Similarity=0.151 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCC
Q 029411 118 KLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPS 174 (194)
Q Consensus 118 ~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~ 174 (194)
.||+..+.++.-.|... + .-.++|..+|++...|.+|....|++.++..
T Consensus 22 ~L~~~~r~vl~l~y~~g----~----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD----Y----SLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHHTC----C----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC----C----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 48899999998776655 1 2357899999999999999999999887643
No 94
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=69.17 E-value=7.8 Score=24.70 Aligned_cols=51 Identities=16% Similarity=0.111 Sum_probs=40.0
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCC
Q 029411 115 KKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPS 174 (194)
Q Consensus 115 kr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~ 174 (194)
.-..|++..+.+|.-+ . + .+ .-.++|..+|++...|.+++...+.+.....
T Consensus 8 ~~~~L~~~e~~il~~~-~-~---g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~ 58 (74)
T 1fse_A 8 SKPLLTKREREVFELL-V-Q---DK----TTKEIASELFISEKTVRNHISNAMQKLGVKG 58 (74)
T ss_dssp CCCCCCHHHHHHHHHH-T-T---TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCSS
T ss_pred CCCCCCHHHHHHHHHH-H-c---CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
Confidence 3457899999998764 2 2 33 2357999999999999999999999887765
No 95
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=67.60 E-value=16 Score=25.31 Aligned_cols=52 Identities=15% Similarity=0.268 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCCCCH-HHHHHHHHHhCCChHHHhhhhHHHHh
Q 029411 116 KGKLPKEARQLLLDWWSRHHRWPYPSE-PQKLALAESTGLDQKQINNWFINQRK 168 (194)
Q Consensus 116 r~~l~k~~~~~L~~wf~~h~~~PYPs~-~ek~~LA~~tgLt~~QV~nWF~N~R~ 168 (194)
+.+|+.+.+...-..+..+- .-|++. .....+|..+|+++.+|.+|..-.+.
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~-~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~~~ 56 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQ-GEYDSQWATICSIAPKIGCTPETLRVWVRQHER 56 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhcc-cccccccccHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 45788888754444443320 013343 35678999999999999999876543
No 96
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=67.04 E-value=12 Score=25.35 Aligned_cols=48 Identities=15% Similarity=0.187 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCC
Q 029411 118 KLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPS 174 (194)
Q Consensus 118 ~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~ 174 (194)
.||+..+.+|.-+ ... +.. .++|..+|++...|.++..+.+++.+...
T Consensus 29 ~Lt~~e~~vl~l~-~~g----~s~----~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 76 (91)
T 2rnj_A 29 MLTEREMEILLLI-AKG----YSN----QEIASASHITIKTVKTHVSNILSKLEVQD 76 (91)
T ss_dssp GCCSHHHHHHHHH-HTT----CCT----THHHHHHTCCHHHHHHHHHHHHHHTTCCS
T ss_pred cCCHHHHHHHHHH-HcC----CCH----HHHHHHHCcCHHHHHHHHHHHHHHHCCCC
Confidence 5788888998764 333 222 37899999999999999999999988765
No 97
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=65.70 E-value=3.9 Score=31.80 Aligned_cols=49 Identities=10% Similarity=0.106 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCC
Q 029411 117 GKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKP 173 (194)
Q Consensus 117 ~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~ 173 (194)
..||+..+.+|.-.|... + .-.++|..+|++...|.++....|++.++.
T Consensus 186 ~~L~~~~r~vl~l~~~~g----~----s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 186 SKLPEREKLVIQLIFYEE----L----PAKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp TTSCHHHHHHHHHHHTSC----C----CHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHhcC----C----CHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999998776544 2 235789999999999999999999988753
No 98
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=65.53 E-value=7.7 Score=29.04 Aligned_cols=50 Identities=12% Similarity=0.248 Sum_probs=39.7
Q ss_pred ccCCCCCCHHHHHHHHHHH-HHccCCCCCCHHHHHHHHH----Hh--CCChHHHhhhhHHHHh
Q 029411 113 KKKKGKLPKEARQLLLDWW-SRHHRWPYPSEPQKLALAE----ST--GLDQKQINNWFINQRK 168 (194)
Q Consensus 113 krkr~~l~k~~~~~L~~wf-~~h~~~PYPs~~ek~~LA~----~t--gLt~~QV~nWF~N~R~ 168 (194)
+++|..|+-+++..+..|+ ..| |-.+..+ ||. .. |++..+|+.|..|+-.
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~---~~~~q~~---la~wa~~~f~~~is~stis~ilk~k~~ 62 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQ---NRSGQQD---LIEWFREKFGKDISQPSVSQILSSKYS 62 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSS---SCCCHHH---HHHHHHHHHSSCCSSSSTTHHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhC---CCCCHHH---HHHHHHHHHCCCCcHHHHHHHHhhHHH
Confidence 5788899999999999998 677 6666443 555 67 7899999999988654
No 99
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=64.86 E-value=4.1 Score=30.80 Aligned_cols=49 Identities=10% Similarity=0.003 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCC
Q 029411 118 KLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPS 174 (194)
Q Consensus 118 ~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~ 174 (194)
.||+..+.+|.-.|... + .-.++|..+|++...|.++....|++.++..
T Consensus 140 ~L~~~~r~vl~l~~~~g----~----s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 140 SLPEDLRMAITLRELDG----L----SYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp HSCHHHHHHHHHHHTTC----C----CHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHhHHHHHcC----C----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 47888888887665544 2 2247999999999999999999999987654
No 100
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=63.68 E-value=2.6 Score=31.70 Aligned_cols=47 Identities=23% Similarity=0.220 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCC
Q 029411 118 KLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWK 172 (194)
Q Consensus 118 ~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk 172 (194)
.||+..+.+|.-.|...+ +| .++|..+|++...|.++....|++.++
T Consensus 135 ~L~~~~r~vl~l~~~~g~--s~------~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 135 RLPEAQRALIERAFFGDL--TH------RELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp TSCHHHHHHHHHHHHSCC--SS------CCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcCC--CH------HHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 489999999987666652 22 268999999999999999999998765
No 101
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=61.38 E-value=6.8 Score=22.86 Aligned_cols=40 Identities=13% Similarity=0.206 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHH
Q 029411 118 KLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFIN 165 (194)
Q Consensus 118 ~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N 165 (194)
.++.+....+...+... - ....+|+.+|++...|..|+..
T Consensus 5 ~~~~~~~~~i~~l~~~g-----~---s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-----H---PRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-----C---CHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCCHHHHHHHHHHHHcC-----C---CHHHHHHHHCCCHHHHHHHHHH
Confidence 45555544444444332 1 2457899999999999999864
No 102
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=60.15 E-value=5.2 Score=28.92 Aligned_cols=49 Identities=10% Similarity=0.119 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCC
Q 029411 118 KLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPS 174 (194)
Q Consensus 118 ~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~ 174 (194)
.||+..+.++.-.|... + .-.++|..+|++...|.++....|++.++-.
T Consensus 25 ~L~~~~r~vl~l~~~~g----~----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED----Y----SLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp GSCHHHHHHHHHHHTSC----C----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC----C----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 47888999988766555 1 2357899999999999999999999887643
No 103
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=58.65 E-value=16 Score=25.72 Aligned_cols=50 Identities=10% Similarity=0.057 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCC
Q 029411 116 KGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPS 174 (194)
Q Consensus 116 r~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~ 174 (194)
...||+..+++|.-+ .+. + .-.++|..+|++...|.++..+.+++..-..
T Consensus 32 ~~~Lt~re~~Vl~l~-~~G----~----s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~~ 81 (99)
T 1p4w_A 32 DKRLSPKESEVLRLF-AEG----F----LVTEIAKKLNRSIKTISSQKKSAMMKLGVDN 81 (99)
T ss_dssp SSSCCHHHHHHHHHH-HHT----C----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCSS
T ss_pred cCCCCHHHHHHHHHH-HcC----C----CHHHHHHHHCcCHHHHHHHHHHHHHHHCCCC
Confidence 467999999999664 343 2 2268999999999999999999999886655
No 104
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=58.04 E-value=5.9 Score=25.97 Aligned_cols=23 Identities=43% Similarity=0.573 Sum_probs=20.2
Q ss_pred HHHHHHHhCCChHHHhhhhHHHH
Q 029411 145 KLALAESTGLDQKQINNWFINQR 167 (194)
Q Consensus 145 k~~LA~~tgLt~~QV~nWF~N~R 167 (194)
...||+.+|++...|++|..+.+
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 45899999999999999998754
No 105
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=57.85 E-value=22 Score=24.27 Aligned_cols=41 Identities=15% Similarity=0.090 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHH
Q 029411 123 ARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQ 166 (194)
Q Consensus 123 ~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~ 166 (194)
....+..|...|+..|-++. ..||..+|+++.++...|.-.
T Consensus 3 ~~~~i~~~i~~~~~~~~~~~---~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFTL---SVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCCH---HHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCH---HHHHHHHCcCHHHHHHHHHHH
Confidence 45667788888876655554 458888899999888887654
No 106
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=55.15 E-value=5.5 Score=24.51 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=19.3
Q ss_pred HHHHHHHhCCChHHHhhhhHHH
Q 029411 145 KLALAESTGLDQKQINNWFINQ 166 (194)
Q Consensus 145 k~~LA~~tgLt~~QV~nWF~N~ 166 (194)
...||+.+|++...|++|..+.
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~ 38 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNK 38 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 3579999999999999999874
No 107
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=54.78 E-value=5.8 Score=24.58 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=19.3
Q ss_pred HHHHHHHhCCChHHHhhhhHHH
Q 029411 145 KLALAESTGLDQKQINNWFINQ 166 (194)
Q Consensus 145 k~~LA~~tgLt~~QV~nWF~N~ 166 (194)
...||+.+|+++..|++|..+.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~ 42 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSE 42 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCCCHHHHHHHHcCC
Confidence 4579999999999999999874
No 108
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=52.91 E-value=6.1 Score=24.77 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=20.4
Q ss_pred HHHHHHHhCCChHHHhhhhHHHHh
Q 029411 145 KLALAESTGLDQKQINNWFINQRK 168 (194)
Q Consensus 145 k~~LA~~tgLt~~QV~nWF~N~R~ 168 (194)
...||+.+|++...|++|..+.+.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 357999999999999999987543
No 109
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=52.69 E-value=12 Score=26.62 Aligned_cols=54 Identities=11% Similarity=0.124 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCCC
Q 029411 118 KLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPSE 175 (194)
Q Consensus 118 ~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~~ 175 (194)
.||+..+.++.-.|..+-..++ .-.++|..+|++...|.+....++++.++...
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~~----s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~ 72 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTDY----TLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 72 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 5888899998877653200122 34578999999999999999999999988764
No 110
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=52.03 E-value=15 Score=24.99 Aligned_cols=43 Identities=14% Similarity=0.330 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHHHH-H-ccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHH
Q 029411 117 GKLPKEARQLLLDWWS-R-HHRWPYPSEPQKLALAESTGLDQKQINNWFINQR 167 (194)
Q Consensus 117 ~~l~k~~~~~L~~wf~-~-h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R 167 (194)
.+++.+.+......+. . . .....+|..+|++..+|.+|....+
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g--------~s~~~ia~~~gIs~~tl~rW~~~~~ 48 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDG--------ASLQQIANDLGINRVTLKNWIIKYG 48 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGG--------SCHHHHHHHHTSCHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHcCC--------ChHHHHHHHHCcCHHHHHHHHHHHh
Confidence 5688877654444432 2 2 1356899999999999999986544
No 111
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=51.27 E-value=22 Score=28.67 Aligned_cols=49 Identities=10% Similarity=0.053 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCC
Q 029411 117 GKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPS 174 (194)
Q Consensus 117 ~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~ 174 (194)
..||+..+.+|.-.+ +. + .-.++|..+|++...|.+...+.|++.+...
T Consensus 196 ~~L~~~erevl~L~~-~G----~----s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~ 244 (258)
T 3clo_A 196 NILSEREKEILRCIR-KG----L----SSKEIAATLYISVNTVNRHRQNILEKLSVGN 244 (258)
T ss_dssp TSSCHHHHHHHHHHH-TT----C----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCSS
T ss_pred ccCCHHHHHHHHHHH-cC----C----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 579999999998763 33 2 3357899999999999999999999998865
No 112
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=51.12 E-value=16 Score=22.39 Aligned_cols=29 Identities=10% Similarity=0.121 Sum_probs=26.2
Q ss_pred HHHHHHhCCChHHHhhhhHHHHhhcCCCC
Q 029411 146 LALAESTGLDQKQINNWFINQRKRHWKPS 174 (194)
Q Consensus 146 ~~LA~~tgLt~~QV~nWF~N~R~R~kk~~ 174 (194)
.++|..+|+++..|.++..+.+++.....
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~~~ 45 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQVHK 45 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCCCC
Confidence 47899999999999999999999987765
No 113
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=49.89 E-value=7.6 Score=24.65 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=19.3
Q ss_pred HHHHHHHhCCChHHHhhhhHHH
Q 029411 145 KLALAESTGLDQKQINNWFINQ 166 (194)
Q Consensus 145 k~~LA~~tgLt~~QV~nWF~N~ 166 (194)
...||+.+|++...|++|..+.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~ 42 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSE 42 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4579999999999999998874
No 114
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=49.85 E-value=7.8 Score=24.66 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChHHHhhhhHHHH
Q 029411 145 KLALAESTGLDQKQINNWFINQR 167 (194)
Q Consensus 145 k~~LA~~tgLt~~QV~nWF~N~R 167 (194)
...||+.+|+++..|++|..+.+
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999998753
No 115
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=48.95 E-value=7.9 Score=24.05 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=19.9
Q ss_pred HHHHHHHhCCChHHHhhhhHHHH
Q 029411 145 KLALAESTGLDQKQINNWFINQR 167 (194)
Q Consensus 145 k~~LA~~tgLt~~QV~nWF~N~R 167 (194)
...||+.+|++...|++|..+.+
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~ 39 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKT 39 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45799999999999999988754
No 116
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=48.84 E-value=17 Score=26.95 Aligned_cols=54 Identities=13% Similarity=0.088 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCCCCcc
Q 029411 117 GKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQ 178 (194)
Q Consensus 117 ~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~~~~~ 178 (194)
..||+..+.+|.-.+... + .-.++|..+|++...|.++....|++.++..+...
T Consensus 92 ~~Lp~~~r~vl~L~~~~g----~----s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~~~~ 145 (157)
T 2lfw_A 92 ARMTPLSRQALLLTAMEG----F----SPEDAAYLIEVDTSEVETLVTEALAEIEKQTRALE 145 (157)
T ss_dssp TTSCTTHHHHHTTTSSSC----C----CHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred HhCCHHHHHHHHHHHHcC----C----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 468888888886443333 2 23578999999999999999999999998775433
No 117
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=48.73 E-value=8.1 Score=24.65 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.3
Q ss_pred HHHHHHHhCCChHHHhhhhHHH
Q 029411 145 KLALAESTGLDQKQINNWFINQ 166 (194)
Q Consensus 145 k~~LA~~tgLt~~QV~nWF~N~ 166 (194)
...||+.+|++...|+.|..+.
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~ 47 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGD 47 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHCCC
Confidence 4579999999999999999774
No 118
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=48.63 E-value=12 Score=24.60 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=19.9
Q ss_pred HHHHHHHhCCChHHHhhhhHHHH
Q 029411 145 KLALAESTGLDQKQINNWFINQR 167 (194)
Q Consensus 145 k~~LA~~tgLt~~QV~nWF~N~R 167 (194)
...||+.+|++...|++|..+.+
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 35799999999999999998743
No 119
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=47.52 E-value=8.1 Score=24.68 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChHHHhhhhHHH
Q 029411 145 KLALAESTGLDQKQINNWFINQ 166 (194)
Q Consensus 145 k~~LA~~tgLt~~QV~nWF~N~ 166 (194)
...||+.+|++...|+.|..+.
T Consensus 24 q~~lA~~~gis~~~is~~e~g~ 45 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTND 45 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 3479999999999999999875
No 120
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=47.28 E-value=7.9 Score=24.75 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.0
Q ss_pred HHHHHHHhCCChHHHhhhhHHHH
Q 029411 145 KLALAESTGLDQKQINNWFINQR 167 (194)
Q Consensus 145 k~~LA~~tgLt~~QV~nWF~N~R 167 (194)
...||+.+|++...|+.|..+.+
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999998754
No 121
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=46.91 E-value=8.1 Score=25.28 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=19.3
Q ss_pred HHHHHHhCCChHHHhhhhHHHH
Q 029411 146 LALAESTGLDQKQINNWFINQR 167 (194)
Q Consensus 146 ~~LA~~tgLt~~QV~nWF~N~R 167 (194)
..||+.+|++...|++|..+.+
T Consensus 29 ~~lA~~~gvs~~~is~~e~g~~ 50 (80)
T 3kz3_A 29 ESVADKMGMGQSAVAALFNGIN 50 (80)
T ss_dssp HHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHHHHHhCcCHHHHHHHHcCCC
Confidence 4799999999999999997753
No 122
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=46.52 E-value=4.2 Score=31.55 Aligned_cols=47 Identities=13% Similarity=0.133 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcC
Q 029411 117 GKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHW 171 (194)
Q Consensus 117 ~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~k 171 (194)
..||+..+.+|.-.|... -.-.++|..+|++...|.+++...|++.|
T Consensus 197 ~~L~~~~r~vl~l~~~~g--------~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 197 EELDERERLIVYLRYYKD--------QTQSEVASRLGISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp -------------------------------------------------------
T ss_pred HhCCHHHHHHHHHHHhcC--------CCHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 358888888887655544 23457999999999999999998888764
No 123
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=46.04 E-value=77 Score=23.20 Aligned_cols=50 Identities=12% Similarity=-0.009 Sum_probs=33.6
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCCCCHHHHHH-HHHH------hCCChHHHhhhhHHHHh
Q 029411 116 KGKLPKEARQLLLDWWSRHHRWPYPSEPQKLA-LAES------TGLDQKQINNWFINQRK 168 (194)
Q Consensus 116 r~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~-LA~~------tgLt~~QV~nWF~N~R~ 168 (194)
+.+++.+....+..++.++ |.-+..+... |... ..++..+|.+|+...+.
T Consensus 81 ~~~~~~~~~~~I~~~~~~~---~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~ 137 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQN---PTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQ 137 (159)
T ss_dssp CCCCCTTHHHHHHHHHHHC---SSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHC---ccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhC
Confidence 4567777888888888877 6556554333 3222 14899999999876544
No 124
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=45.99 E-value=10 Score=24.15 Aligned_cols=19 Identities=21% Similarity=0.574 Sum_probs=17.4
Q ss_pred HHHHHHHhCCChHHHhhhh
Q 029411 145 KLALAESTGLDQKQINNWF 163 (194)
Q Consensus 145 k~~LA~~tgLt~~QV~nWF 163 (194)
...||+.+|+++.-|+.|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 3579999999999999998
No 125
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=45.74 E-value=9.8 Score=25.23 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=20.1
Q ss_pred HHHHHHHhCCChHHHhhhhHHHH
Q 029411 145 KLALAESTGLDQKQINNWFINQR 167 (194)
Q Consensus 145 k~~LA~~tgLt~~QV~nWF~N~R 167 (194)
...||+.+|++...|++|..+.+
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999998765
No 126
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=45.47 E-value=9.8 Score=23.96 Aligned_cols=22 Identities=27% Similarity=0.221 Sum_probs=19.3
Q ss_pred HHHHHHHhCCChHHHhhhhHHH
Q 029411 145 KLALAESTGLDQKQINNWFINQ 166 (194)
Q Consensus 145 k~~LA~~tgLt~~QV~nWF~N~ 166 (194)
...||+.+|++...|++|..+.
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~ 50 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQ 50 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHCCC
Confidence 4579999999999999998774
No 127
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=45.08 E-value=34 Score=23.42 Aligned_cols=52 Identities=13% Similarity=0.134 Sum_probs=38.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCC
Q 029411 114 KKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPS 174 (194)
Q Consensus 114 rkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~ 174 (194)
.....||+..+++|.-.. +. + .-.++|..+|++...|.+...+.+++..-..
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~-~G----~----s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~~ 76 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVE-KG----F----TNQEIADALHLSKRSIEYSLTSIFNKLNVGS 76 (90)
T ss_dssp ----CCCHHHHHHHHHHH-TT----C----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCSS
T ss_pred ccccCCCHHHHHHHHHHH-cC----C----CHHHHHHHHCcCHHHHHHHHHHHHHHHCCCC
Confidence 344678999999997654 33 2 3467899999999999999999988876543
No 128
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=42.65 E-value=31 Score=24.40 Aligned_cols=43 Identities=9% Similarity=0.007 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHH
Q 029411 117 GKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQR 167 (194)
Q Consensus 117 ~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R 167 (194)
..++.+.+..+...+... + ....+|+.+|++...|.+|+...+
T Consensus 5 ~~~s~~~r~~i~~~~~~G----~----s~~~ia~~lgis~~Tv~r~~~~~~ 47 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN----V----SLHEMSRKISRSRHCIRVYLKDPV 47 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT----C----CHHHHHHHHTCCHHHHHHHHHSGG
T ss_pred ccCCHHHHHHHHHHHHcC----C----CHHHHHHHHCcCHHHHHHHHHccc
Confidence 467777776665555433 2 245789999999999999997543
No 129
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=42.47 E-value=13 Score=25.05 Aligned_cols=22 Identities=5% Similarity=0.087 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChHHHhhhhHHH
Q 029411 145 KLALAESTGLDQKQINNWFINQ 166 (194)
Q Consensus 145 k~~LA~~tgLt~~QV~nWF~N~ 166 (194)
...||+.+|++...|++|..+.
T Consensus 24 q~~lA~~~gis~~~is~~e~g~ 45 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGK 45 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTS
T ss_pred HHHHHHHhCCCHHHHHHHHcCC
Confidence 4679999999999999999874
No 130
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=42.38 E-value=12 Score=25.05 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=17.5
Q ss_pred HHHHHHhCCChHHHhhhhHH
Q 029411 146 LALAESTGLDQKQINNWFIN 165 (194)
Q Consensus 146 ~~LA~~tgLt~~QV~nWF~N 165 (194)
..||+.+|++...|++|..+
T Consensus 26 ~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 26 SALSRQFGYAPTTLANALER 45 (74)
T ss_dssp HHHHHHHSSCHHHHHHTTTS
T ss_pred HHHHHHHCcCHHHHHHHHcC
Confidence 46999999999999999663
No 131
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=41.45 E-value=18 Score=24.26 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=19.0
Q ss_pred HHHHHHHhCCChHHHhhhhHH
Q 029411 145 KLALAESTGLDQKQINNWFIN 165 (194)
Q Consensus 145 k~~LA~~tgLt~~QV~nWF~N 165 (194)
...||+.+|+++.-|+.|..+
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhC
Confidence 568999999999999999865
No 132
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=41.36 E-value=12 Score=24.30 Aligned_cols=23 Identities=30% Similarity=0.224 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChHHHhhhhHHHH
Q 029411 145 KLALAESTGLDQKQINNWFINQR 167 (194)
Q Consensus 145 k~~LA~~tgLt~~QV~nWF~N~R 167 (194)
...||+.+|++...|+.|..+.+
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 35799999999999999998753
No 133
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=41.04 E-value=39 Score=23.13 Aligned_cols=43 Identities=7% Similarity=0.140 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHh
Q 029411 118 KLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRK 168 (194)
Q Consensus 118 ~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~ 168 (194)
.++.+.+..+...+... + + ...+|+.+|++...|..|+...+.
T Consensus 17 ~~s~~~r~~i~~~~~~g----~-s---~~~ia~~lgis~~Tv~~w~~~~~~ 59 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAADG----I-R---PCVISRQLRVSHGCVSKILNRYQE 59 (128)
T ss_dssp CCCHHHHHHHHHHHHTT----C-C---HHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC----C-C---HHHHHHHHCcCHHHHHHHHHHHHh
Confidence 57777776665555433 2 2 357899999999999999987543
No 134
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=40.73 E-value=12 Score=25.22 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=19.2
Q ss_pred HHHHHHHhCCChHHHhhhhHHH
Q 029411 145 KLALAESTGLDQKQINNWFINQ 166 (194)
Q Consensus 145 k~~LA~~tgLt~~QV~nWF~N~ 166 (194)
...||+.+|++...|+.|..+.
T Consensus 25 q~~lA~~~gis~~~is~~e~G~ 46 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGI 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHhCC
Confidence 3569999999999999999874
No 135
>3bj4_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, alternative splicing, deafness, disease mutation, glycoprotein, ION transport; 2.00A {Homo sapiens}
Probab=40.54 E-value=15 Score=23.31 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=15.7
Q ss_pred ChhHHHHHHHHHHHHHHH
Q 029411 16 DPALDQFMEAYCEMLTKY 33 (194)
Q Consensus 16 dpeLd~fm~~Yc~~L~~y 33 (194)
|..||+|.+.|.++|.+.
T Consensus 30 d~KLd~l~~~~~~~l~~~ 47 (49)
T 3bj4_A 30 DQRLALITDMLHQLLSLH 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 678999999999988763
No 136
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=40.08 E-value=12 Score=24.19 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.1
Q ss_pred HHHHHHHhCCChHHHhhhhHHH
Q 029411 145 KLALAESTGLDQKQINNWFINQ 166 (194)
Q Consensus 145 k~~LA~~tgLt~~QV~nWF~N~ 166 (194)
...||+.+|++...|+.|..+.
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~ 39 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSE 39 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCC
Confidence 3579999999999999998774
No 137
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=38.43 E-value=17 Score=21.92 Aligned_cols=20 Identities=10% Similarity=0.406 Sum_probs=17.6
Q ss_pred HHHHHHHhCCChHHHhhhhH
Q 029411 145 KLALAESTGLDQKQINNWFI 164 (194)
Q Consensus 145 k~~LA~~tgLt~~QV~nWF~ 164 (194)
...+|+.+|++...|.+|+.
T Consensus 34 ~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 34 VQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45789999999999999975
No 138
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=38.27 E-value=52 Score=24.41 Aligned_cols=50 Identities=16% Similarity=0.105 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHHHHc-cCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhh
Q 029411 117 GKLPKEARQLLLDWWSRH-HRWPYPSEPQKLALAESTGLDQKQINNWFINQRKR 169 (194)
Q Consensus 117 ~~l~k~~~~~L~~wf~~h-~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R 169 (194)
-.++....-+|...+..+ ..+|+||.+ .||..+|+++.+|...+.+--.+
T Consensus 28 LgLs~~E~~lLl~L~~~~~~g~~~ps~~---~LA~~~~~s~~~v~~~L~~L~~K 78 (135)
T 2v79_A 28 LGLNETELILLLKIKMHLEKGSYFPTPN---QLQEGMSISVEECTNRLRMFIQK 78 (135)
T ss_dssp HTCCHHHHHHHHHHHHHHTTTCCSCCHH---HHHTTSSSCHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHhcCCCCCCHH---HHHHHHCcCHHHHHHHHHHHHHC
Confidence 356666655665554432 345999986 59999999999999998875543
No 139
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=38.25 E-value=32 Score=23.58 Aligned_cols=47 Identities=9% Similarity=-0.043 Sum_probs=29.7
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCC-------ChHHHhhhhHH
Q 029411 116 KGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGL-------DQKQINNWFIN 165 (194)
Q Consensus 116 r~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgL-------t~~QV~nWF~N 165 (194)
..+++.+....+..++.++ |.-+..+........|+ +...|.+|+..
T Consensus 73 ~~~l~~~~~~~i~~~~~~~---~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 73 PRIATPEIENRIEEYKRSS---PGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRG 126 (128)
T ss_dssp CCSSCSTHHHHHHHTTTTC---TTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC--
T ss_pred CCcCCHHHHHHHHHHHHhC---cchHHHHHHHHHHHcCCccccCCcCHHHHHHHHHh
Confidence 3467777777777777666 66666554433323374 88999999753
No 140
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=38.07 E-value=13 Score=24.61 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChHHHhhhhHHH
Q 029411 145 KLALAESTGLDQKQINNWFINQ 166 (194)
Q Consensus 145 k~~LA~~tgLt~~QV~nWF~N~ 166 (194)
...||..+|++...|+.|..+.
T Consensus 33 q~~lA~~~gis~~~is~~e~g~ 54 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGI 54 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 3579999999999999999874
No 141
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=37.99 E-value=14 Score=24.06 Aligned_cols=21 Identities=19% Similarity=0.045 Sum_probs=19.0
Q ss_pred HHHHHHhCCChHHHhhhhHHH
Q 029411 146 LALAESTGLDQKQINNWFINQ 166 (194)
Q Consensus 146 ~~LA~~tgLt~~QV~nWF~N~ 166 (194)
..||+.+|++...|+.|-.+.
T Consensus 31 ~elA~~~gis~~~is~~e~g~ 51 (83)
T 3f6w_A 31 KELAARLGRPQSFVSKTENAE 51 (83)
T ss_dssp HHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHCcCHHHHHHHHCCC
Confidence 579999999999999999875
No 142
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=37.09 E-value=69 Score=22.46 Aligned_cols=46 Identities=7% Similarity=0.065 Sum_probs=31.5
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhC--CChHHHhhhhHHHHh
Q 029411 116 KGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTG--LDQKQINNWFINQRK 168 (194)
Q Consensus 116 r~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tg--Lt~~QV~nWF~N~R~ 168 (194)
..+++.+....+..+ ..+ |.-+.. .|+..+| ++...|.+|+.....
T Consensus 58 ~~~l~~~~~~~i~~~-~~~---~~~s~~---~i~~~lg~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 58 RKALSVRDERNVIRA-ASN---SCKTAR---DIRNELQLSASKRTILNVIKRSGV 105 (141)
T ss_dssp CCSSCHHHHHHHHHH-HHH---CCCCHH---HHHHHTTCCSCHHHHHHHHHHTC-
T ss_pred CCcCCHHHHHHHHHH-HhC---CCCCHH---HHHHHHCCCccHHHHHHHHHHCCC
Confidence 346788877766666 555 544543 5677778 799999999976544
No 143
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=35.32 E-value=43 Score=26.41 Aligned_cols=50 Identities=20% Similarity=0.276 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCC
Q 029411 116 KGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPS 174 (194)
Q Consensus 116 r~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~ 174 (194)
...||+..+++|. |+.+. + .-.++|..+|++...|++...|.+++..-..
T Consensus 173 ~~~Lt~~e~~vl~-~~~~g----~----s~~eIa~~l~is~~tV~~~~~~~~~kl~~~~ 222 (236)
T 2q0o_A 173 KQMLSPREMLCLV-WASKG----K----TASVTANLTGINARTVQHYLDKARAKLDAES 222 (236)
T ss_dssp GGSCCHHHHHHHH-HHHTT----C----CHHHHHHHHCCCHHHHHHHHHHHHHHHTCSS
T ss_pred cCCCCHHHHHHHH-HHHcC----C----CHHHHHHHHCcCHHHHHHHHHHHHHHhCCCC
Confidence 4579999999985 44433 2 2357899999999999999999999876544
No 144
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=35.18 E-value=87 Score=21.26 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHH
Q 029411 123 ARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQ 166 (194)
Q Consensus 123 ~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~ 166 (194)
....+..|...|+..| ++ -..||...|+++.++...|...
T Consensus 3 ~i~~~~~~i~~~~~~~-~~---~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 3 AVRQVEEYIEANWMRP-IT---IEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHHHHHTTSC-CC---HHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCC-CC---HHHHHHHHCCCHHHHHHHHHHH
Confidence 3455677888886655 44 4468888899998888877653
No 145
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=35.12 E-value=17 Score=24.42 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChHHHhhhhHHHH
Q 029411 145 KLALAESTGLDQKQINNWFINQR 167 (194)
Q Consensus 145 k~~LA~~tgLt~~QV~nWF~N~R 167 (194)
...||+.+|++...|++|..+.+
T Consensus 20 q~~lA~~~gis~~~is~~e~g~~ 42 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYESGRS 42 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999998753
No 146
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=34.99 E-value=17 Score=24.17 Aligned_cols=21 Identities=14% Similarity=0.121 Sum_probs=19.0
Q ss_pred HHHHHHhCCChHHHhhhhHHH
Q 029411 146 LALAESTGLDQKQINNWFINQ 166 (194)
Q Consensus 146 ~~LA~~tgLt~~QV~nWF~N~ 166 (194)
..||+.+|++...|++|..+.
T Consensus 30 ~~lA~~~gis~~~is~~e~g~ 50 (91)
T 1x57_A 30 KDLATKINEKPQVIADYESGR 50 (91)
T ss_dssp HHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHCcCHHHHHHHHcCC
Confidence 569999999999999999875
No 147
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=34.83 E-value=18 Score=22.57 Aligned_cols=21 Identities=5% Similarity=0.074 Sum_probs=18.8
Q ss_pred HHHHHHhC--CChHHHhhhhHHH
Q 029411 146 LALAESTG--LDQKQINNWFINQ 166 (194)
Q Consensus 146 ~~LA~~tg--Lt~~QV~nWF~N~ 166 (194)
..||..+| ++...|++|..+.
T Consensus 25 ~~lA~~~g~~is~~~i~~~e~g~ 47 (71)
T 2ewt_A 25 HGVEEKSQGRWKAVVVGSYERGD 47 (71)
T ss_dssp HHHHHHTTTSSCHHHHHHHHHTC
T ss_pred HHHHHHHCCcCCHHHHHHHHCCC
Confidence 57999999 9999999999874
No 148
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=34.34 E-value=59 Score=23.49 Aligned_cols=44 Identities=9% Similarity=0.107 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHh
Q 029411 117 GKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRK 168 (194)
Q Consensus 117 ~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~ 168 (194)
..++.+.+......+... + + ...+|+.+|++...|.+|+...+.
T Consensus 31 ~~~s~e~r~~iv~~~~~G----~-s---~~~iA~~lgis~~TV~rw~~~~~~ 74 (149)
T 1k78_A 31 RPLPDVVRQRIVELAHQG----V-R---PCDISRQLRVSHGCVSKILGRYYE 74 (149)
T ss_dssp SCCCHHHHHHHHHHHHTT----C-C---HHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcC----C-C---HHHHHHHHCcCHHHHHHHHHHHHH
Confidence 357887776665555433 2 2 457899999999999999986554
No 149
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=34.26 E-value=77 Score=21.80 Aligned_cols=40 Identities=15% Similarity=0.132 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHH
Q 029411 123 ARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQ 166 (194)
Q Consensus 123 ~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~ 166 (194)
....+..|...|+..| ++ -..||...|+++.++...|...
T Consensus 8 ~i~~~~~~i~~~~~~~-~~---~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 8 KLTEAVSLMEANIEEP-LS---TDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp HHHHHHHHHHTCSSSC-CC---HHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCC-CC---HHHHHHHHCcCHHHHHHHHHHH
Confidence 3456677888887666 55 3568888899998888877643
No 150
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=33.82 E-value=18 Score=24.88 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=19.4
Q ss_pred HHHHHHHhCCChHHHhhhhHHH
Q 029411 145 KLALAESTGLDQKQINNWFINQ 166 (194)
Q Consensus 145 k~~LA~~tgLt~~QV~nWF~N~ 166 (194)
...||+.+|++...|+.|..++
T Consensus 40 q~eLA~~~GiS~~tis~iE~G~ 61 (88)
T 3t76_A 40 KGELREAVGVSKSTFAKLGKNE 61 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4579999999999999999883
No 151
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=33.65 E-value=17 Score=23.55 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=19.2
Q ss_pred HHHHHHHhCCChHHHhhhhHHH
Q 029411 145 KLALAESTGLDQKQINNWFINQ 166 (194)
Q Consensus 145 k~~LA~~tgLt~~QV~nWF~N~ 166 (194)
...||..+|++...|+.|-.+.
T Consensus 27 q~~lA~~~gis~~~i~~~e~g~ 48 (82)
T 3s8q_A 27 QEDLAYKSNLDRTYISGIERNS 48 (82)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHhCcCHHHHHHHHCCC
Confidence 3579999999999999998775
No 152
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=33.39 E-value=21 Score=22.25 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=18.6
Q ss_pred HHHHHHHhCCChHHHhhhhHHH
Q 029411 145 KLALAESTGLDQKQINNWFINQ 166 (194)
Q Consensus 145 k~~LA~~tgLt~~QV~nWF~N~ 166 (194)
...+|+.+|+++..|+.|..+.
T Consensus 16 ~~~~A~~lgis~~~vs~~~~~~ 37 (67)
T 2pij_A 16 QSALAAALGVNQSAISQMVRAG 37 (67)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 3479999999999999999544
No 153
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=33.18 E-value=22 Score=22.92 Aligned_cols=23 Identities=9% Similarity=0.018 Sum_probs=19.6
Q ss_pred HHHHHHHhCCChHHHhhhhHHHH
Q 029411 145 KLALAESTGLDQKQINNWFINQR 167 (194)
Q Consensus 145 k~~LA~~tgLt~~QV~nWF~N~R 167 (194)
...||+.+|++...|++|-.+.+
T Consensus 27 q~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 27 QKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp HHHHHHHHCSCTTHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHcCCC
Confidence 35799999999999999988754
No 154
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=32.84 E-value=27 Score=32.41 Aligned_cols=56 Identities=9% Similarity=0.067 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCCCC
Q 029411 117 GKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPSED 176 (194)
Q Consensus 117 ~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~~~ 176 (194)
..||+..+.+|.-.|.......| .-.++|..+|+|...|.++...++++.|++...
T Consensus 549 ~~Lp~~er~Vl~Lr~~~~~~e~~----s~~EIA~~lgis~~tVk~~~~rAl~kLR~~~~~ 604 (613)
T 3iyd_F 549 AGLTAREAKVLRMRFGIDMNTDH----TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS 604 (613)
T ss_dssp TSSCHHHHHHHHHHHTSSSCCCC----STTGGGTTTSSCSSHHHHHHHHHHTTTTSCSSS
T ss_pred HcCCHHHHHHHHHHhccCCCCCc----CHHHHHHHhCCCHHHHHHHHHHHHHHhhCcchh
Confidence 46899999999888762211111 234789999999999999999999999998854
No 155
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=32.26 E-value=19 Score=23.61 Aligned_cols=22 Identities=9% Similarity=0.161 Sum_probs=19.5
Q ss_pred HHHHHHhCCChHHHhhhhHHHH
Q 029411 146 LALAESTGLDQKQINNWFINQR 167 (194)
Q Consensus 146 ~~LA~~tgLt~~QV~nWF~N~R 167 (194)
..||..+|++...|++|..+.+
T Consensus 31 ~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 31 VTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp HHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHhCCCHHHHHHHHcCCC
Confidence 4899999999999999998754
No 156
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=32.21 E-value=50 Score=24.28 Aligned_cols=42 Identities=12% Similarity=0.151 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHH
Q 029411 117 GKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQ 166 (194)
Q Consensus 117 ~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~ 166 (194)
..++.+.+..+...+... + ....+|+.+|++...|.+|+...
T Consensus 24 ~~~s~e~r~~ii~l~~~G----~----s~~~IA~~lgis~~TV~rwl~r~ 65 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG----V----RPCDISRQLRVSHGCVSKILGRY 65 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT----C----CHHHHHHHHTCCSHHHHHHHCCS
T ss_pred CCCCHHHHHHHHHHHHcC----C----CHHHHHHHHCcCHHHHHHHHHHH
Confidence 367777776666665544 1 24578999999999999998753
No 157
>2kvv_A Putative excisionase; DNA binding, WHTH motif, structural genomics, N structural genomics consortium (NESG), PSI-2; NMR {Klebsiella pneumoniae}
Probab=31.02 E-value=57 Score=22.55 Aligned_cols=38 Identities=26% Similarity=0.264 Sum_probs=25.7
Q ss_pred HHHHHHhCCChHHHhhhhHHHHhhcCCCCCCcccccccccCC
Q 029411 146 LALAESTGLDQKQINNWFINQRKRHWKPSEDMQFNDISIMNG 187 (194)
Q Consensus 146 ~~LA~~tgLt~~QV~nWF~N~R~R~kk~~~~~~~~~~~~~~~ 187 (194)
..|+..|||+..+|.. +|+..|-..-+......||.+.
T Consensus 14 ~~l~a~tGLs~~tIkr----yR~~~WlEGrhyrrvspdG~p~ 51 (78)
T 2kvv_A 14 KALMVRTGLGARQIES----YRQGAWIEGVHFKRVSPSGEKT 51 (78)
T ss_dssp HHHHHHHCCCHHHHHH----HHTTTCCBTTTEEEECSSSSCC
T ss_pred HHHHHHHCCCHHHHHH----HHhchhhheeeeEeeCCCCCCC
Confidence 4688899999999974 5555554545555555666643
No 158
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=30.68 E-value=55 Score=25.74 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=39.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCC
Q 029411 114 KKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPS 174 (194)
Q Consensus 114 rkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~ 174 (194)
.....||+..+++|. |+.+. + .-.++|..+|++...|.+...|.+++.--..
T Consensus 169 ~~~~~Lt~~e~~vl~-~~~~g----~----s~~eIa~~l~is~~tV~~~~~~~~~kl~~~~ 220 (234)
T 1l3l_A 169 EDAAWLDPKEATYLR-WIAVG----K----TMEEIADVEGVKYNSVRVKLREAMKRFDVRS 220 (234)
T ss_dssp ECCCCCCHHHHHHHH-HHTTT----C----CHHHHHHHHTCCHHHHHHHHHHHHHHHTCSS
T ss_pred CCCCCCCHHHHHHHH-HHHcC----C----CHHHHHHHHCcCHHHHHHHHHHHHHHhCCCC
Confidence 345679999999985 44333 2 3357888999999999999999999875544
No 159
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=30.57 E-value=31 Score=22.43 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=18.3
Q ss_pred HHHHHHhCCChHHHhhhhHH
Q 029411 146 LALAESTGLDQKQINNWFIN 165 (194)
Q Consensus 146 ~~LA~~tgLt~~QV~nWF~N 165 (194)
..||..+|++...|++|-.+
T Consensus 27 ~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 27 SELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHCcCHHHHHHHHcC
Confidence 57899999999999999987
No 160
>2w9j_A Signal recognition particle subunit SRP14; radiation-induced phasing, RNA-BI ribonucleoprotein, signaling P arsenic, ALU-domain; 2.60A {Schizosaccharomyces pombe}
Probab=29.16 E-value=32 Score=24.35 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 029411 17 PALDQFMEAYCEMLTKYEQ 35 (194)
Q Consensus 17 peLd~fm~~Yc~~L~~y~~ 35 (194)
-+|+.|+..|+.+|...-.
T Consensus 65 ~~l~~F~~~Y~~v~K~~M~ 83 (91)
T 2w9j_A 65 DYFTDFFQSYAEVXKGQIV 83 (91)
T ss_dssp GGHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCCc
Confidence 4899999999999976543
No 161
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=28.86 E-value=79 Score=20.18 Aligned_cols=38 Identities=5% Similarity=-0.037 Sum_probs=29.7
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHH
Q 029411 125 QLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFIN 165 (194)
Q Consensus 125 ~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N 165 (194)
..+..|..-. -.|+.+.-..||..+|+++..+.-|+..
T Consensus 40 ~~is~~e~g~---~~~~~~~~~~ia~~l~v~~~~l~~~l~~ 77 (80)
T 3kz3_A 40 SAVAALFNGI---NALNAYNAALLAKILKVSVEEFSPSIAR 77 (80)
T ss_dssp HHHHHHHTTS---SCCCHHHHHHHHHHHTSCGGGTCHHHHH
T ss_pred HHHHHHHcCC---CCCCHHHHHHHHHHhCCCHHHHhHHHHh
Confidence 4455665444 4588999999999999999999988764
No 162
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=28.79 E-value=24 Score=23.43 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=19.2
Q ss_pred HHHHHHhCCChHHHhhhhHHHH
Q 029411 146 LALAESTGLDQKQINNWFINQR 167 (194)
Q Consensus 146 ~~LA~~tgLt~~QV~nWF~N~R 167 (194)
..||..+|++...|++|-.+.+
T Consensus 31 ~elA~~~gis~~~is~~E~G~~ 52 (86)
T 3eus_A 31 ADLAERLDKPQSFVAKVETRER 52 (86)
T ss_dssp HHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHhCcCHHHHHHHHCCCC
Confidence 4799999999999999987754
No 163
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=28.52 E-value=24 Score=24.15 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChHHHhhhhHHH
Q 029411 145 KLALAESTGLDQKQINNWFINQ 166 (194)
Q Consensus 145 k~~LA~~tgLt~~QV~nWF~N~ 166 (194)
...||+.+|++...|+.|..+.
T Consensus 34 q~~lA~~~gis~~~is~~e~g~ 55 (104)
T 3cec_A 34 TANFAEILGVSNQTIQEVINGQ 55 (104)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4579999999999999999875
No 164
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=28.40 E-value=1.6e+02 Score=21.02 Aligned_cols=52 Identities=19% Similarity=0.107 Sum_probs=34.3
Q ss_pred hccCCCCCCHHHHHHHHHHHHHc-cCCCCCCHHHHHHHHHHhCCChHHHhhhhHHH
Q 029411 112 KKKKKGKLPKEARQLLLDWWSRH-HRWPYPSEPQKLALAESTGLDQKQINNWFINQ 166 (194)
Q Consensus 112 kkrkr~~l~k~~~~~L~~wf~~h-~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~ 166 (194)
..-++-.++.....+|...+..+ ...|+||.. .||..+|++...|.+-+.+-
T Consensus 23 ~~y~~lgLt~~e~~vll~L~~~~~~~~~~ps~~---~LA~~l~~s~~~V~~~l~~L 75 (128)
T 2vn2_A 23 GHYKQLGLGEGELVLLLHMQSFFEEGVLFPTPA---ELAERMTVSAAECMEMVRRL 75 (128)
T ss_dssp TTTTTTTCCHHHHHHHHHHHHHHTTTCSSCCHH---HHHHTSSSCHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCCCCCHH---HHHHHHCcCHHHHHHHHHHH
Confidence 33344567776666664443322 245889875 58999999999998876554
No 165
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=28.15 E-value=45 Score=29.87 Aligned_cols=53 Identities=11% Similarity=-0.013 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcC-CCC
Q 029411 118 KLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHW-KPS 174 (194)
Q Consensus 118 ~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~k-k~~ 174 (194)
.||...+.+|...|.-+-..+ -.-..+|..+|+|...|..+...++++.+ ++.
T Consensus 375 ~L~ereR~VI~LRygL~~~e~----~TleEIAe~LgIS~erVRqi~~RAlkKLR~~~~ 428 (438)
T 1l9z_H 375 KLSEREAMVLKLRKGLIDGRE----HTLEEVGAYFGVTRERIRQIENKALRKLKYHES 428 (438)
T ss_pred hCCHHHHHHHHHHHhccCCCC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHhHh
Confidence 588889999977765210012 24568999999999999999999999998 554
No 166
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=28.14 E-value=24 Score=24.06 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=18.8
Q ss_pred HHHHHHHhCCChHHHhhhhHH
Q 029411 145 KLALAESTGLDQKQINNWFIN 165 (194)
Q Consensus 145 k~~LA~~tgLt~~QV~nWF~N 165 (194)
...||..+|++...|++|..+
T Consensus 17 q~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 17 LSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 357999999999999999987
No 167
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=28.08 E-value=26 Score=24.26 Aligned_cols=22 Identities=9% Similarity=0.264 Sum_probs=19.3
Q ss_pred HHHHHHHhCCChHHHhhhhHHH
Q 029411 145 KLALAESTGLDQKQINNWFINQ 166 (194)
Q Consensus 145 k~~LA~~tgLt~~QV~nWF~N~ 166 (194)
...||..+|++...|+.|-.+.
T Consensus 25 q~~lA~~~gis~~~i~~~e~g~ 46 (114)
T 3op9_A 25 NHQIAELLNVQTRTVAYYMSGE 46 (114)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 3479999999999999999875
No 168
>1e8o_B SRP14, signal recognition particle 14 kDa protein; ALU ribonucleoprotein particle, protein recognition of AN RNA U-turn, translational control; HET: GDP; 3.20A {Homo sapiens} SCOP: d.49.1.1 PDB: 1e8s_B 1ry1_D*
Probab=27.94 E-value=31 Score=24.98 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHHH
Q 029411 17 PALDQFMEAYCEMLTKY 33 (194)
Q Consensus 17 peLd~fm~~Yc~~L~~y 33 (194)
-+|+.|+..|+.+|...
T Consensus 73 ~dl~~F~~~Y~~v~K~~ 89 (106)
T 1e8o_B 73 KEVNKFQMAYSNLLRAN 89 (106)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 48999999999998754
No 169
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=27.93 E-value=1.5e+02 Score=20.37 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHh-------------cCchHHHHHHHHHHHHHhhhhh
Q 029411 17 PALDQFMEAYCEMLTKYEQEL-------------TKPFKDASLFLSEIDAQLKTLT 59 (194)
Q Consensus 17 peLd~fm~~Yc~~L~~y~~el-------------~~p~~ea~~fl~~ie~ql~~L~ 59 (194)
-++|+.-.+.-+.-.||+.|+ .+-.++|.+.--.+|.++.+|.
T Consensus 21 ~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~ 76 (86)
T 3swk_A 21 VERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 467787777777888888885 3566777777777777777765
No 170
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=27.76 E-value=1.1e+02 Score=25.34 Aligned_cols=74 Identities=18% Similarity=0.230 Sum_probs=45.9
Q ss_pred HHHHHHHhhcCCccchhHHhhhccCCCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHH-HhCCChHHHhhhhHHHHhh
Q 029411 91 LKDQLLRRYSGSLGSLKQEFLKKKKKGKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAE-STGLDQKQINNWFINQRKR 169 (194)
Q Consensus 91 lk~~l~r~y~~~~~~~~~e~~kkrkr~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~-~tgLt~~QV~nWF~N~R~R 169 (194)
...+|..++...+..++......+.....+.+-..++...+..+-++ . ..+|+ .-+=|..||.+.|.|.++|
T Consensus 108 ~~~~L~~~~~~~Ie~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKD------W-~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 108 TNSALKEKLDGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRD------F-QAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp HHHHHHHHSTTTTGGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSC------H-HHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhhcccccCCCCCCccCCCCCHHHHHHHHHHHHHHCcC------H-HHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 33444455544444444433334556688888888887777776211 2 23333 4558999999999999888
Q ss_pred cC
Q 029411 170 HW 171 (194)
Q Consensus 170 ~k 171 (194)
+.
T Consensus 181 ln 182 (235)
T 2iw5_B 181 FN 182 (235)
T ss_dssp TT
T ss_pred hh
Confidence 53
No 171
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=27.58 E-value=25 Score=24.97 Aligned_cols=22 Identities=9% Similarity=0.092 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChHHHhhhhHHH
Q 029411 145 KLALAESTGLDQKQINNWFINQ 166 (194)
Q Consensus 145 k~~LA~~tgLt~~QV~nWF~N~ 166 (194)
...||..+|++...|++|-.+.
T Consensus 28 q~~lA~~~gis~~~is~~E~g~ 49 (126)
T 3ivp_A 28 REQVGAMIEIDPRYLTNIENKG 49 (126)
T ss_dssp HHHHHHHHTCCHHHHHHHHHSC
T ss_pred HHHHHHHhCcCHHHHHHHHCCC
Confidence 3579999999999999999875
No 172
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=27.37 E-value=25 Score=24.33 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=19.1
Q ss_pred HHHHHHHhCCChHHHhhhhHHH
Q 029411 145 KLALAESTGLDQKQINNWFINQ 166 (194)
Q Consensus 145 k~~LA~~tgLt~~QV~nWF~N~ 166 (194)
...||..+|++...|+.|..+.
T Consensus 27 q~~lA~~~gis~~~is~~e~g~ 48 (113)
T 2eby_A 27 INELAELLHVHRNSVSALINNN 48 (113)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 3579999999999999999874
No 173
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=26.73 E-value=1.7e+02 Score=20.80 Aligned_cols=49 Identities=8% Similarity=-0.007 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCCCCHHHHHH-HHHHh----C--CChHHHhhhhHHHH
Q 029411 116 KGKLPKEARQLLLDWWSRHHRWPYPSEPQKLA-LAEST----G--LDQKQINNWFINQR 167 (194)
Q Consensus 116 r~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~-LA~~t----g--Lt~~QV~nWF~N~R 167 (194)
+.+++.+....+..++.++ |.-+..+... |.... | ++...|.+|+....
T Consensus 88 ~~~~~~~~~~~I~~~~~~~---~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~~ 143 (149)
T 1k78_A 88 PKVATPKVVEKIAEYKRQN---PTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTKV 143 (149)
T ss_dssp CSSSCHHHHHHHHHHHHHC---TTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC-
T ss_pred CCCCCHHHHHHHHHHHHhC---cchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHh
Confidence 4568888888889998887 6556544322 22221 5 78999999986433
No 174
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=26.05 E-value=43 Score=25.63 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=24.3
Q ss_pred HHHHHHHHHhCCChHHHhhhhHHHHhhc
Q 029411 143 PQKLALAESTGLDQKQINNWFINQRKRH 170 (194)
Q Consensus 143 ~ek~~LA~~tgLt~~QV~nWF~N~R~R~ 170 (194)
.+|..|....||+.+|..++|.-+|+..
T Consensus 11 ~~kqk~~~~yg~~e~q~~~~~~~a~~~~ 38 (159)
T 1c05_A 11 QEKQKLRHMYGVNERQFRKTFEEAGKMP 38 (159)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcc
Confidence 4788899999999999999999887654
No 175
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=25.67 E-value=1.1e+02 Score=21.48 Aligned_cols=58 Identities=24% Similarity=0.406 Sum_probs=40.0
Q ss_pred hccCCCCCCHHHHHHHHHHHHHcc--CCCCCCHHHHH----HHHHHhCCCh-HHHhhhhHHHHhhc
Q 029411 112 KKKKKGKLPKEARQLLLDWWSRHH--RWPYPSEPQKL----ALAESTGLDQ-KQINNWFINQRKRH 170 (194)
Q Consensus 112 kkrkr~~l~k~~~~~L~~wf~~h~--~~PYPs~~ek~----~LA~~tgLt~-~QV~nWF~N~R~R~ 170 (194)
.++.+....++.-..|..|+.+.. .-| ||..... .|+...|++. +==.+|+.+-.+|+
T Consensus 66 ~kr~r~~~~~~~E~~L~~Wi~~~~~~g~p-vs~~~I~~kA~~i~~~~g~~~f~~S~gWl~~F~~Rh 130 (131)
T 1hlv_A 66 RKTNKLSPYDKLEGLLIAWFQQIRAAGLP-VKGIILKEKALRIAEELGMDDFTASNGWLDRFRRRR 130 (131)
T ss_dssp CCCCCCCTTHHHHHHHHHHHHHHGGGTCC-CCHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHT
T ss_pred hcccCCCCCHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhc
Confidence 345556677888999999998764 345 6766654 4555667653 23467999988886
No 176
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=25.26 E-value=35 Score=22.12 Aligned_cols=22 Identities=9% Similarity=0.096 Sum_probs=19.7
Q ss_pred HHHHHHhCCChHHHhhhhHHHH
Q 029411 146 LALAESTGLDQKQINNWFINQR 167 (194)
Q Consensus 146 ~~LA~~tgLt~~QV~nWF~N~R 167 (194)
..||+.+|++...|+.++.+.+
T Consensus 4 ~diA~~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 4 DEIARLAGVSRTTASYVINGKA 25 (65)
T ss_dssp HHHHHHHTSCHHHHHHHHHTCT
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 5799999999999999998865
No 177
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=25.14 E-value=28 Score=24.27 Aligned_cols=22 Identities=9% Similarity=0.132 Sum_probs=19.2
Q ss_pred HHHHHHhCCChHHHhhhhHHHH
Q 029411 146 LALAESTGLDQKQINNWFINQR 167 (194)
Q Consensus 146 ~~LA~~tgLt~~QV~nWF~N~R 167 (194)
..||..+|++...|+.|-.+.+
T Consensus 53 ~elA~~~gis~~~is~~E~G~~ 74 (107)
T 2jvl_A 53 AELGKEIGETAATVASYERGTA 74 (107)
T ss_dssp HHHHHHHTCCHHHHHHHTTTCS
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 4699999999999999998744
No 178
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=25.04 E-value=31 Score=23.48 Aligned_cols=21 Identities=5% Similarity=0.189 Sum_probs=18.5
Q ss_pred HHHHHHhCCChHHHhhhhHHH
Q 029411 146 LALAESTGLDQKQINNWFINQ 166 (194)
Q Consensus 146 ~~LA~~tgLt~~QV~nWF~N~ 166 (194)
..||+.+|++...|++|-.+.
T Consensus 47 ~elA~~lgvs~~~is~~E~G~ 67 (99)
T 2ppx_A 47 EEFSARYHIPLGTLRDWEQGR 67 (99)
T ss_dssp HHHHHHHTCCHHHHHHHHTTS
T ss_pred HHHHHHhCcCHHHHHHHHcCC
Confidence 469999999999999998764
No 179
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=24.53 E-value=1.2e+02 Score=23.18 Aligned_cols=43 Identities=16% Similarity=0.276 Sum_probs=28.8
Q ss_pred CCHHHHH---HHHHHHHHccCCCC-CCHHHHHHHHHHhCCC-hHHHhhhhHHHH
Q 029411 119 LPKEARQ---LLLDWWSRHHRWPY-PSEPQKLALAESTGLD-QKQINNWFINQR 167 (194)
Q Consensus 119 l~k~~~~---~L~~wf~~h~~~PY-Ps~~ek~~LA~~tgLt-~~QV~nWF~N~R 167 (194)
|+..+.. .|+....++ .+ ||. .+||+.+|++ +..|++|+..-.
T Consensus 4 lt~~q~~i~~~i~~~~~~~---g~~ps~---~elA~~lgiss~~tv~~~~~~l~ 51 (202)
T 1jhf_A 4 LTARQQEVFDLIRDHISQT---GMPPTR---AEIAQRLGFRSPNAAEEHLKALA 51 (202)
T ss_dssp CCHHHHHHHHHHHHHHHHH---SSCCCH---HHHHHHTTCSSHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHh---CCCccH---HHHHHHhCCCChHHHHHHHHHHH
Confidence 4554443 445555555 66 463 4699999999 999999986433
No 180
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=24.45 E-value=32 Score=24.20 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=18.8
Q ss_pred HHHHHHhCCChHHHhhhhHHH
Q 029411 146 LALAESTGLDQKQINNWFINQ 166 (194)
Q Consensus 146 ~~LA~~tgLt~~QV~nWF~N~ 166 (194)
..||..+|++...|++|-.+.
T Consensus 40 ~elA~~~gis~~~is~~E~G~ 60 (111)
T 3mlf_A 40 KELGDLFKVSSRTIQNMEKDS 60 (111)
T ss_dssp HHHHHHHTSCHHHHHHHHHCC
T ss_pred HHHHHHHCcCHHHHHHHHCCC
Confidence 469999999999999998875
No 181
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=24.36 E-value=26 Score=21.78 Aligned_cols=46 Identities=22% Similarity=0.350 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHh
Q 029411 120 PKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRK 168 (194)
Q Consensus 120 ~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~ 168 (194)
+.++-..|+.+...| .-.+.+.-..-|.++||...-|..+|..--.
T Consensus 5 seeverklkefvrrh---qeitqetlheyaqklglnqqaieqffrefeq 50 (52)
T 1y66_A 5 SEEVERKLKEFVRRH---QEITQETLHEYAQKLGLNQQAIEQFFREFEQ 50 (52)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCccHHHHHHHHHHHHh
Confidence 456677888888888 6677788889999999999999999875433
No 182
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=24.23 E-value=43 Score=23.33 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=17.1
Q ss_pred HHHHHHHhCCChHHHhhhhH
Q 029411 145 KLALAESTGLDQKQINNWFI 164 (194)
Q Consensus 145 k~~LA~~tgLt~~QV~nWF~ 164 (194)
-..+|+..|++.+||+.|=.
T Consensus 27 Q~~vAe~~GvdeStISR~k~ 46 (83)
T 1zs4_A 27 TEKTAEAVGVDKSQISRWKR 46 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHH
T ss_pred hHHHHHHhCCCHHHHhhhhh
Confidence 45789999999999999843
No 183
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=24.10 E-value=56 Score=28.79 Aligned_cols=53 Identities=11% Similarity=-0.019 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcC-CCC
Q 029411 118 KLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHW-KPS 174 (194)
Q Consensus 118 ~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~k-k~~ 174 (194)
.||+..+.+|...|.-.-..+ -.-.++|..+|+|...|..+...++++.+ .+.
T Consensus 360 ~L~~rer~Vl~lr~~L~~~e~----~Tl~EIA~~lgiS~erVrqi~~rAl~kLR~~~~ 413 (423)
T 2a6h_F 360 KLSEREAMVLKLRKGLIDGRE----HTLEEVGAFFGVTRERIRQIENKALRKLKYHES 413 (423)
T ss_dssp SSCHHHHHHHHHHHHTTCC---------CHHHHSSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhccCCCCC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHhhhh
Confidence 588889999987765210002 35568999999999999999999999998 543
No 184
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=24.01 E-value=30 Score=24.19 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=19.1
Q ss_pred HHHHHHhCCChHHHhhhhHHHH
Q 029411 146 LALAESTGLDQKQINNWFINQR 167 (194)
Q Consensus 146 ~~LA~~tgLt~~QV~nWF~N~R 167 (194)
..||+.+|++...|+.|-.+.+
T Consensus 38 ~elA~~~gis~~~is~~E~G~~ 59 (114)
T 3vk0_A 38 EELARQCGLDRTYVSAVERKRW 59 (114)
T ss_dssp HHHHHHHTCCHHHHHHHTTTCC
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 4799999999999999987753
No 185
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=23.92 E-value=35 Score=22.64 Aligned_cols=19 Identities=21% Similarity=0.461 Sum_probs=16.6
Q ss_pred HHHHHHhCCChHHHhhhhH
Q 029411 146 LALAESTGLDQKQINNWFI 164 (194)
Q Consensus 146 ~~LA~~tgLt~~QV~nWF~ 164 (194)
.++|+.+|+++..|..|-.
T Consensus 9 ~e~A~~~gvs~~tlR~ye~ 27 (81)
T 2jml_A 9 RTIARMTGIREATLRAWER 27 (81)
T ss_dssp HHHHHTTSTTHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHH
Confidence 4689999999999999944
No 186
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=23.49 E-value=81 Score=21.98 Aligned_cols=40 Identities=5% Similarity=-0.085 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhH
Q 029411 121 KEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFI 164 (194)
Q Consensus 121 k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~ 164 (194)
......+..|...|+..+ + .-..||..+|+++.++...|.
T Consensus 6 ~~~~~~~~~~i~~~~~~~-~---~~~~lA~~~~~S~~~l~r~fk 45 (120)
T 3mkl_A 6 PNMRTRVCTVINNNIAHE-W---TLARIASELLMSPSLLKKKLR 45 (120)
T ss_dssp CCHHHHHHHHHHTSTTSC-C---CHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCC-C---CHHHHHHHHCcCHHHHHHHHH
Confidence 345666778888886554 2 345688999999999988874
No 187
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=23.31 E-value=1.8e+02 Score=19.63 Aligned_cols=39 Identities=13% Similarity=0.088 Sum_probs=26.4
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHH
Q 029411 124 RQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFIN 165 (194)
Q Consensus 124 ~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N 165 (194)
...+.+|...|+..+-++ -..||...|+++.++..-|..
T Consensus 5 i~~~~~~i~~~~~~~~~~---~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 5 VREACQYISDHLADSNFD---IASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp HHHHHHHHHHTSSCSSCC---HHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCC---HHHHHHHHCCCHHHHHHHHHH
Confidence 345567888885522244 345888889998888877764
No 188
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=23.16 E-value=34 Score=24.06 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=19.9
Q ss_pred HHHHHHHhCCChHHHhhhhHHHH
Q 029411 145 KLALAESTGLDQKQINNWFINQR 167 (194)
Q Consensus 145 k~~LA~~tgLt~~QV~nWF~N~R 167 (194)
...||+.+|++...|+.|..++|
T Consensus 30 q~eLA~~lGis~~~is~ie~G~~ 52 (104)
T 3trb_A 30 ANQLAKHLAIPTNRVTAILNGAR 52 (104)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45799999999999999997764
No 189
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=22.94 E-value=54 Score=20.88 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=18.2
Q ss_pred HHHHHHHhCCChHHHhhhhHH
Q 029411 145 KLALAESTGLDQKQINNWFIN 165 (194)
Q Consensus 145 k~~LA~~tgLt~~QV~nWF~N 165 (194)
..++|..+|++...|.+|-.+
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTT
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 357899999999999999865
No 190
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=22.83 E-value=39 Score=22.76 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.3
Q ss_pred HHHHHHHhCCChHH----HhhhhHHH
Q 029411 145 KLALAESTGLDQKQ----INNWFINQ 166 (194)
Q Consensus 145 k~~LA~~tgLt~~Q----V~nWF~N~ 166 (194)
...||..+|++... |++|-.+.
T Consensus 17 q~~lA~~~gis~~~~~~~is~~E~g~ 42 (98)
T 3lfp_A 17 QEKLGVLAGIDEASASARMNQYEKGK 42 (98)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhCCCcchhhhHHHHHHCCC
Confidence 35799999999999 99999875
No 191
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=22.43 E-value=35 Score=23.71 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=19.3
Q ss_pred HHHHHHhCCChHHHhhhhHHHH
Q 029411 146 LALAESTGLDQKQINNWFINQR 167 (194)
Q Consensus 146 ~~LA~~tgLt~~QV~nWF~N~R 167 (194)
..||..+|++...|+.|-.+.+
T Consensus 45 ~~lA~~~gis~~~is~~E~g~~ 66 (117)
T 3f52_A 45 RELAEASRVSPGYLSELERGRK 66 (117)
T ss_dssp HHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHHHHHHCcCHHHHHHHHCCCC
Confidence 5799999999999999987754
No 192
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=22.38 E-value=36 Score=23.46 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=19.1
Q ss_pred HHHHHHHhCCChHHHhhhhHHH
Q 029411 145 KLALAESTGLDQKQINNWFINQ 166 (194)
Q Consensus 145 k~~LA~~tgLt~~QV~nWF~N~ 166 (194)
...||..+|++...|+.|-.+.
T Consensus 44 q~elA~~~gis~~~is~iE~G~ 65 (99)
T 3g5g_A 44 QEDLAYKSNLDRTYISGIERNS 65 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHCCC
Confidence 3578999999999999998775
No 193
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=21.99 E-value=1.9e+02 Score=19.55 Aligned_cols=53 Identities=8% Similarity=0.107 Sum_probs=40.6
Q ss_pred ccCCCCCCHHHHHHHHHHHHHc--cCCCCCCHHHHHHHHHHhC--CChHHHhhhhHH
Q 029411 113 KKKKGKLPKEARQLLLDWWSRH--HRWPYPSEPQKLALAESTG--LDQKQINNWFIN 165 (194)
Q Consensus 113 krkr~~l~k~~~~~L~~wf~~h--~~~PYPs~~ek~~LA~~tg--Lt~~QV~nWF~N 165 (194)
.++...++.+....|+..|..- -...|.+..+-..+.+..| ++..+|..+|.-
T Consensus 24 ~~~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~ 80 (100)
T 2lv7_A 24 EQRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQR 80 (100)
T ss_dssp TCSCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHH
T ss_pred hcccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 3456678888888898888854 3578899999888888877 567778777653
No 194
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=21.20 E-value=1.1e+02 Score=20.77 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=26.9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHH
Q 029411 124 RQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQ 166 (194)
Q Consensus 124 ~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~ 166 (194)
...+..|...|+..+ + .-..||...|+++.++...|...
T Consensus 7 i~~~~~~i~~~~~~~-~---~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 7 IQNVLSYITEHFSEG-M---SLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp HHHHHHHHHHHTTSC-C---CHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-C---CHHHHHHHHCcCHHHHHHHHHHH
Confidence 455667888885544 2 34568888888888888777543
No 195
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=20.96 E-value=54 Score=23.05 Aligned_cols=44 Identities=5% Similarity=0.036 Sum_probs=28.8
Q ss_pred CCCCCCHHHH-HHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHH
Q 029411 115 KKGKLPKEAR-QLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQ 166 (194)
Q Consensus 115 kr~~l~k~~~-~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~ 166 (194)
..++++.+.+ .++...+.-. ....++|+..||+..+|..|-.-.
T Consensus 29 ~~rrWs~~~Kl~VV~~~~~g~--------~s~~e~arry~Is~s~i~~W~r~~ 73 (95)
T 2jrt_A 29 DTRRWVASRKAAVVKAVIHGL--------ITEREALDRYSLSEEEFALWRSAV 73 (95)
T ss_dssp SCCCCCHHHHHHHHHHHHTTS--------SCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred hhhccCHHHHHHHHHHHHcCC--------CCHHHHHHHhCCCHHHHHHHHHHH
Confidence 3345666654 3444443333 235589999999999999997554
No 196
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=20.81 E-value=1.4e+02 Score=21.06 Aligned_cols=42 Identities=19% Similarity=0.307 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHH
Q 029411 120 PKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFIN 165 (194)
Q Consensus 120 ~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N 165 (194)
.......+..|...|+..| ++ -..||...|+++.++..-|..
T Consensus 9 ~~~~i~~~~~~i~~~~~~~-~s---l~~lA~~~~~S~~~l~r~fk~ 50 (129)
T 1bl0_A 9 DAITIHSILDWIEDNLESP-LS---LEKVSERSGYSKWHLQRMFKK 50 (129)
T ss_dssp CHHHHHHHHHHHHTTTTSC-CC---CHHHHHHSSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccCCC-CC---HHHHHHHHCcCHHHHHHHHHH
Confidence 3445667788888887666 44 346788888888888777754
No 197
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=20.33 E-value=1.2e+02 Score=24.55 Aligned_cols=49 Identities=12% Similarity=0.204 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChHHHhhhhHHHHhhcCCCC
Q 029411 117 GKLPKEARQLLLDWWSRHHRWPYPSEPQKLALAESTGLDQKQINNWFINQRKRHWKPS 174 (194)
Q Consensus 117 ~~l~k~~~~~L~~wf~~h~~~PYPs~~ek~~LA~~tgLt~~QV~nWF~N~R~R~kk~~ 174 (194)
..||+..+++|. |+.+. + .-.++|..+|++...|++...|.+++..-..
T Consensus 196 ~~Lt~re~~vl~-~~~~G----~----s~~eIA~~l~is~~TV~~~~~~~~~kl~~~~ 244 (265)
T 3qp6_A 196 MPLSQREYDIFH-WMSRG----K----TNWEIATILNISERTVKFHVANVIRKLNANN 244 (265)
T ss_dssp CCCCHHHHHHHH-HHHTT----C----CHHHHHHHHTSCHHHHHHHHHHHHHHTTCSS
T ss_pred CCCCHHHHHHHH-HHHcC----C----CHHHHHHHHCcCHHHHHHHHHHHHHHhCCCC
Confidence 479999999986 44433 2 3457899999999999999999999987655
Done!