BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029412
(194 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 199 bits (507), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 100/193 (51%), Positives = 129/193 (66%), Gaps = 8/193 (4%)
Query: 6 RVQKELQECSKDIEASGIKVTPV---SDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGY 62
R+QKEL KDIE ++ N G I GP GTPYEGG F L IT+P+ Y
Sbjct: 27 RLQKEL----KDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDY 82
Query: 63 PFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQ 122
P+ PPK+ FVTK+WHPNISSQ+GAICLD+LK++WSPALT++TALLS+QALLS P PDDPQ
Sbjct: 83 PYNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQ 142
Query: 123 DAVVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEK-VQKLVEMGFPESQVRSTLEIVG 181
DA VA+ Y ++H F+ TA WT++FA E ++K+ EMGF E Q ++ L
Sbjct: 143 DAEVAKMYKENHALFVKTASVWTKTFATGPKEEPREVIIKKITEMGFSEDQAKNALIKAN 202
Query: 182 GDENMALEKLLSS 194
+E +AL LL +
Sbjct: 203 WNETLALNTLLEN 215
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 175 bits (443), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 78/131 (59%), Positives = 100/131 (76%)
Query: 20 ASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPN 79
+ G+ V ++ G I GP+GTPYEGG F LDI +P YP+ PPKM FVTK+WHPN
Sbjct: 62 SHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPN 121
Query: 80 ISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLS 139
ISSQ+GAICLDILK +WSPALT++TALLS+QA+L+ P P DPQDA VA+ +++H F+
Sbjct: 122 ISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQ 181
Query: 140 TARYWTESFAK 150
TA+ WTE+FAK
Sbjct: 182 TAKLWTETFAK 192
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 173 bits (439), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 86/158 (54%), Positives = 114/158 (72%), Gaps = 2/158 (1%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPF 64
R+ KE+Q KD A+ I + VS+ ++ HL G GP GTPYEGG F +DI +P YPF
Sbjct: 6 RIMKEIQAV-KDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 64
Query: 65 EPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDA 124
+PPKM F TKV+HPNISS +GAICLDIL++ WSP +TLK+AL+S+QALL +P P+DPQDA
Sbjct: 65 KPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDA 124
Query: 125 VVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQK 162
VAQ YL+D ++F TA WT +A +S G + V++
Sbjct: 125 EVAQHYLRDRESFNKTAALWTRLYASETSNGQKGNVEE 162
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 173 bits (438), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 99/197 (50%), Positives = 127/197 (64%), Gaps = 4/197 (2%)
Query: 2 IDFSRVQKELQECSKDIEASG--IKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLP 59
I R+++E +E K E S IKV V +N L G I GP TPYEGG ++L+I +P
Sbjct: 6 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 65
Query: 60 DGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPD 119
+ YPF PPK+ F+TK+WHPNISS +GAICLDILKDQW+ A+TL+T LLS+QALL+A PD
Sbjct: 66 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 125
Query: 120 DPQDAVVAQQYLKDHQTFLSTARYWTESFAKT--SSLGVEEKVQKLVEMGFPESQVRSTL 177
DPQDAVVA QY ++ + F TAR W +A SS +K++ L MGF + V L
Sbjct: 126 DPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVIVAL 185
Query: 178 EIVGGDENMALEKLLSS 194
D A E LLS+
Sbjct: 186 SSKSWDVETATELLLSN 202
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 172 bits (437), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 99/197 (50%), Positives = 127/197 (64%), Gaps = 4/197 (2%)
Query: 2 IDFSRVQKELQECSKDIEASG--IKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLP 59
I R+++E +E K E S IKV V +N L G I GP TPYEGG ++L+I +P
Sbjct: 5 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 64
Query: 60 DGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPD 119
+ YPF PPK+ F+TK+WHPNISS +GAICLDILKDQW+ A+TL+T LLS+QALL+A PD
Sbjct: 65 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 124
Query: 120 DPQDAVVAQQYLKDHQTFLSTARYWTESFAKT--SSLGVEEKVQKLVEMGFPESQVRSTL 177
DPQDAVVA QY ++ + F TAR W +A SS +K++ L MGF + V L
Sbjct: 125 DPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVIVAL 184
Query: 178 EIVGGDENMALEKLLSS 194
D A E LLS+
Sbjct: 185 SSKSWDVETATELLLSN 201
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 172 bits (437), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 99/197 (50%), Positives = 127/197 (64%), Gaps = 4/197 (2%)
Query: 2 IDFSRVQKELQECSKDIEASG--IKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLP 59
I R+++E +E K E S IKV V +N L G I GP TPYEGG ++L+I +P
Sbjct: 21 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 80
Query: 60 DGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPD 119
+ YPF PPK+ F+TK+WHPNISS +GAICLDILKDQW+ A+TL+T LLS+QALL+A PD
Sbjct: 81 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 140
Query: 120 DPQDAVVAQQYLKDHQTFLSTARYWTESFAKT--SSLGVEEKVQKLVEMGFPESQVRSTL 177
DPQDAVVA QY ++ + F TAR W +A SS +K++ L MGF + V L
Sbjct: 141 DPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVIVAL 200
Query: 178 EIVGGDENMALEKLLSS 194
D A E LLS+
Sbjct: 201 SSKSWDVETATELLLSN 217
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 170 bits (430), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 98/197 (49%), Positives = 126/197 (63%), Gaps = 4/197 (2%)
Query: 2 IDFSRVQKELQECSKDIEASG--IKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLP 59
I R+++E +E K E S IKV V +N L G I GP TPYEGG ++L+I +P
Sbjct: 57 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 116
Query: 60 DGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPD 119
+ YPF PPK+ F+TK+WHPNISS +GAICLDILKDQW+ A+TL+T LLS+QALL+A PD
Sbjct: 117 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 176
Query: 120 DPQDAVVAQQYLKDHQTFLSTARYWTESFAKT--SSLGVEEKVQKLVEMGFPESQVRSTL 177
DPQDAVVA QY ++ + F TAR W +A SS +K++ L GF + V L
Sbjct: 177 DPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAAGFDRNAVIVAL 236
Query: 178 EIVGGDENMALEKLLSS 194
D A E LLS+
Sbjct: 237 SSKSWDVETATELLLSN 253
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 169 bits (427), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/145 (57%), Positives = 107/145 (73%), Gaps = 2/145 (1%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPF 64
R+ KE+Q KD A+ I + VS+ ++ HL G GP GTPYEGG F +DI +P YPF
Sbjct: 5 RIMKEIQAV-KDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 63
Query: 65 EPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDA 124
+PPKM F TKV+HPNISS +GAICLDILK+ WSP +TLK+AL+S+QALL +P P+DPQDA
Sbjct: 64 KPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDA 123
Query: 125 VVAQQYLKDHQTFLSTARYWTESFA 149
VAQ YL+D ++F TA WT +A
Sbjct: 124 EVAQHYLRDRESFNKTAALWTRLYA 148
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 160 bits (406), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 84/150 (56%), Positives = 107/150 (71%), Gaps = 2/150 (1%)
Query: 2 IDFSRVQKELQECSKDIEASG--IKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLP 59
I R+++E +E K E S IKV V +N L G I GP TPYEGG ++L+I +P
Sbjct: 8 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 67
Query: 60 DGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPD 119
+ YPF PPK+ F+TK+WHPNISS +GAICLDILKDQW+ A+TL+T LLS+QALL+A PD
Sbjct: 68 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 127
Query: 120 DPQDAVVAQQYLKDHQTFLSTARYWTESFA 149
DPQDAVVA QY ++ + F TAR W +A
Sbjct: 128 DPQDAVVANQYKQNPEMFKQTARLWAHVYA 157
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 156 bits (395), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 74/149 (49%), Positives = 101/149 (67%), Gaps = 2/149 (1%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
R+ KE Q + + GI PV +N H +I GP GTPYEGGT++L++ LP+ YP E
Sbjct: 5 RITKETQNLANE-PPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 66 PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
PPK+ F+TK++HPNI + G ICLDILKD+WSPAL ++T LLS+QALLS+P PDDP D+
Sbjct: 64 PPKVRFLTKIYHPNI-DKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSK 122
Query: 126 VAQQYLKDHQTFLSTARYWTESFAKTSSL 154
VA+ + +D AR W + +A + L
Sbjct: 123 VAEHFKQDKNDAEHVARQWNKIYANNNVL 151
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 155 bits (392), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 73/147 (49%), Positives = 100/147 (68%), Gaps = 2/147 (1%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
R+ KE Q + + GI PV +N H +I GP GTPYEGGT++L++ LP+ YP E
Sbjct: 5 RITKETQNLANE-PPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 66 PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
PPK+ F+TK++HPNI + G ICLDILKD+WSPAL ++T LLS+QALLS+P PDDP D+
Sbjct: 64 PPKVRFLTKIYHPNI-DKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSK 122
Query: 126 VAQQYLKDHQTFLSTARYWTESFAKTS 152
VA+ + +D AR W + +A +
Sbjct: 123 VAEHFKQDKNDAEHVARQWNKIYANNN 149
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 149 bits (377), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 94/144 (65%), Gaps = 2/144 (1%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
R+ KEL + SKD + PV D++ H I GP +PY GG F L+I P YPF+
Sbjct: 25 RINKELNDLSKD-PPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFK 83
Query: 66 PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
PPK++F TK++HPNI+SQ GAICLDILKDQWSPALT+ LLS+ +LL+ P PDDP
Sbjct: 84 PPKVNFTTKIYHPNINSQ-GAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPE 142
Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
+A Y D + TAR W++ +A
Sbjct: 143 IAHLYKSDRMRYDQTAREWSQKYA 166
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 144 bits (362), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 71/145 (48%), Positives = 94/145 (64%), Gaps = 2/145 (1%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
R+QKEL+E +D PV D++ H T I GP +PY+GG F LD+ P YPF+
Sbjct: 8 RIQKELREIQQD-PPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFK 66
Query: 66 PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
P++ F+TKV+HPNI+ ++G ICLDILKDQWSPALTL LLS+ +LL+ P P DP D
Sbjct: 67 APRVTFMTKVYHPNIN-KNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPE 125
Query: 126 VAQQYLKDHQTFLSTARYWTESFAK 150
VA + + F TAR WT +A+
Sbjct: 126 VANVLRANKKQFEDTAREWTRMYAR 150
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 91/144 (63%), Gaps = 2/144 (1%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
R+ +EL + KD +S PV D+L H I GP +PY GG F L I P YPF+
Sbjct: 5 RINRELADLGKDPPSSS-SAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFK 63
Query: 66 PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
PPK++F T+++HPNI+S G+ICLDIL+DQWSPALT+ LLS+ +LL+ P PDDP
Sbjct: 64 PPKVNFTTRIYHPNINSN-GSICLDILRDQWSPALTISKVLLSISSLLTDPNPDDPLVPE 122
Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
+A Y D + +AR WT +A
Sbjct: 123 IAHVYKTDRSRYELSAREWTRKYA 146
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 141 bits (355), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 92/146 (63%), Gaps = 2/146 (1%)
Query: 4 FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
R+QKELQ+ +D A PV D+L H I GP +PY+GG F L I P YP
Sbjct: 8 LKRIQKELQDLQRDPPAQ-CSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYP 66
Query: 64 FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
F+PPK+ F TK++HPNI+S +G+ICLDIL+ QWSPALT+ LLS+ +LL P PDDP
Sbjct: 67 FKPPKVAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV 125
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
+A Y D + + AR WT+ +A
Sbjct: 126 PDIAHIYKSDKEKYNRLAREWTQKYA 151
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 140 bits (353), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 93/146 (63%), Gaps = 2/146 (1%)
Query: 4 FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
R+QKELQ+ +D A PV D+L H I GP +PY+GG F L I P YP
Sbjct: 6 LKRIQKELQDLGRDPPAQ-CSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYP 64
Query: 64 FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
F+PPK+ F T+++HPNI+S +G+ICLDIL+ QWSPALT+ LLS+ +LL P PDDP
Sbjct: 65 FKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 123
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
+A+ Y D + + AR WT+ +A
Sbjct: 124 PEIARIYKTDRERYNQLAREWTQKYA 149
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 139 bits (351), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 95/147 (64%), Gaps = 2/147 (1%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
R+ KE Q + GIK P N + +I GP +P+EGGTF+L++ LP+ YP
Sbjct: 7 RIIKETQRLLAE-PVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 65
Query: 66 PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
PK+ F+TK++HPN+ + G ICLDILKD+WSPAL ++T LLS+QALLSAP PDDP
Sbjct: 66 APKVRFMTKIYHPNVD-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAND 124
Query: 126 VAQQYLKDHQTFLSTARYWTESFAKTS 152
VA+Q+ + + TAR WT +A +
Sbjct: 125 VAEQWKTNEAQAIETARAWTRLYAMNN 151
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 139 bits (350), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 95/147 (64%), Gaps = 2/147 (1%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
R+ KE Q + GIK P N + +I GP +P+EGGTF+L++ LP+ YP
Sbjct: 9 RIIKETQRLLAE-PVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 67
Query: 66 PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
PK+ F+TK++HPN+ + G ICLDILKD+WSPAL ++T LLS+QALLSAP PDDP
Sbjct: 68 APKVRFMTKIYHPNVD-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAND 126
Query: 126 VAQQYLKDHQTFLSTARYWTESFAKTS 152
VA+Q+ + + TAR WT +A +
Sbjct: 127 VAEQWKTNEAQAIETARAWTRLYAMNN 153
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 94/144 (65%), Gaps = 2/144 (1%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
R+ KE Q + GIK P N + +I GP +P+EGGTF+L++ LP+ YP
Sbjct: 5 RIIKETQRLLAE-PVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 63
Query: 66 PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
PK+ F+TK++HPN+ + G ICLDILKD+WSPAL ++T LLS+QALLSAP PDDP
Sbjct: 64 APKVRFMTKIYHPNVD-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAND 122
Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
VA+Q+ + + TAR WT +A
Sbjct: 123 VAEQWKTNEAQAIETARAWTRLYA 146
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 95/147 (64%), Gaps = 2/147 (1%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
R+ KE Q + GIK P N + +I GP +P+EGGTF+L++ LP+ YP
Sbjct: 10 RIIKETQRLLAE-PVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 68
Query: 66 PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
PK+ F+TK++HPN+ + G ICLDILKD+WSPAL ++T LLS+QALLSAP PDDP
Sbjct: 69 APKVRFMTKIYHPNVD-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAND 127
Query: 126 VAQQYLKDHQTFLSTARYWTESFAKTS 152
VA+Q+ + + TAR WT +A +
Sbjct: 128 VAEQWKTNEAQAIETARAWTRLYAMNN 154
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 139 bits (349), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 94/144 (65%), Gaps = 2/144 (1%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
R+ KE Q + GIK P N + +I GP +P+EGGTF+L++ LP+ YP
Sbjct: 12 RIIKETQRLLAE-PVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 70
Query: 66 PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
PK+ F+TK++HPN+ + G ICLDILKD+WSPAL ++T LLS+QALLSAP PDDP
Sbjct: 71 APKVRFMTKIYHPNVD-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAND 129
Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
VA+Q+ + + TAR WT +A
Sbjct: 130 VAEQWKTNEAQAIETARAWTRLYA 153
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 138 bits (347), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 92/146 (63%), Gaps = 2/146 (1%)
Query: 4 FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
R+ KEL + ++D A PV D++ H I GP +PY+GG F L I P YP
Sbjct: 8 LKRIHKELNDLARDPPAQ-CSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 66
Query: 64 FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
F+PPK+ F T+++HPNI+S +G+ICLDIL+ QWSPALT+ LLS+ +LL P PDDP
Sbjct: 67 FKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 125
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
+A+ Y D + + AR WT+ +A
Sbjct: 126 PEIARIYKTDREKYNRIAREWTQKYA 151
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 138 bits (347), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 92/146 (63%), Gaps = 2/146 (1%)
Query: 4 FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
R+ KEL + ++D A PV D++ H I GP +PY+GG F L I P YP
Sbjct: 13 LKRIHKELNDLARDPPAQ-CSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 71
Query: 64 FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
F+PPK+ F T+++HPNI+S +G+ICLDIL+ QWSPALT+ LLS+ +LL P PDDP
Sbjct: 72 FKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 130
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
+A+ Y D + + AR WT+ +A
Sbjct: 131 PEIARIYQTDREKYNRIAREWTQKYA 156
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/144 (48%), Positives = 89/144 (61%), Gaps = 2/144 (1%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
R+ KEL + +D S PV D+L H I GP +PY GG F L I P YPF+
Sbjct: 6 RIAKELSDLERDPPTS-CSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFK 64
Query: 66 PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
PPK+ F TK++HPNI++ G ICLDILKDQWSPALTL LLS+ +LL+ PDDP
Sbjct: 65 PPKISFTTKIYHPNINAN-GNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPE 123
Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
+A Y D + +TAR WT+ +A
Sbjct: 124 IAHIYKTDRPKYEATAREWTKKYA 147
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 92/146 (63%), Gaps = 2/146 (1%)
Query: 4 FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
R+ KEL + ++D A PV D++ H I GP +PY+GG F L I P YP
Sbjct: 21 LKRIHKELNDLARDPPAQ-CSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 79
Query: 64 FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
F+PPK+ F T+++HPNI+S +G+ICLDIL+ QWSPALT+ LLS+ +LL P PDDP
Sbjct: 80 FKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 138
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
+A+ Y D + + AR WT+ +A
Sbjct: 139 PEIARIYKTDREKYNRIAREWTQKYA 164
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 92/146 (63%), Gaps = 2/146 (1%)
Query: 4 FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
R+ KEL + ++D A PV D++ H I GP +PY+GG F L I P YP
Sbjct: 3 LKRIHKELNDLARDPPAQ-CSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 61
Query: 64 FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
F+PPK+ F T+++HPNI+S +G+ICLDIL+ QWSPALT+ LLS+ +LL P PDDP
Sbjct: 62 FKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 120
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
+A+ Y D + + AR WT+ +A
Sbjct: 121 PEIARIYKTDREKYNRIAREWTQKYA 146
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 92/146 (63%), Gaps = 2/146 (1%)
Query: 4 FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
R+ KEL + ++D A PV D++ H I GP +PY+GG F L I P YP
Sbjct: 5 LKRIHKELNDLARDPPAQ-CSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 64 FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
F+PPK+ F T+++HPNI+S +G+ICLDIL+ QWSPALT+ LLS+ +LL P PDDP
Sbjct: 64 FKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 122
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
+A+ Y D + + AR WT+ +A
Sbjct: 123 PEIARIYKTDREKYNRIAREWTQKYA 148
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 92/146 (63%), Gaps = 2/146 (1%)
Query: 4 FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
R+ KEL + ++D A PV D++ H I GP +PY+GG F L I P YP
Sbjct: 5 LKRIHKELNDLARDPPAQ-CSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 64 FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
F+PPK+ F T+++HPNI+S +G+ICLDIL+ QWSPALT+ LLS+ +LL P PDDP
Sbjct: 64 FKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 122
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
+A+ Y D + + AR WT+ +A
Sbjct: 123 PEIARIYKTDREKYNRIAREWTQKYA 148
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 113/196 (57%), Gaps = 12/196 (6%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
R+ KEL + ++D A PV D++ H I GP +PY+GG F L I P YPF+
Sbjct: 7 RIHKELNDLARDPPAQ-CSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 66 PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
PPK+ F T+++HPNI+S +G+I LDIL+ QWSPALT+ LLS+ +LL P PDDP
Sbjct: 66 PPKVAFTTRIYHPNINS-NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 124
Query: 126 VAQQYLKDHQTFLSTARYWTESFAKTSS------LGVEEKVQKLVEMGFPESQVRSTLEI 179
+A+ Y D + + AR WT+ +A S + ++++Q+ + + P R L +
Sbjct: 125 IARIYKTDREKYNRIAREWTQKYAMGGSAYDEAIMAQQDRIQQEIAVQNPLVSERLELSV 184
Query: 180 V----GGDENMALEKL 191
+ D+N+ +K+
Sbjct: 185 LYKEYAEDDNIYQQKI 200
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 137 bits (344), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 94/146 (64%), Gaps = 2/146 (1%)
Query: 5 SRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPF 64
R+ KE ++ D GI P DNL + I GP +PYE G F L++ LPD YP
Sbjct: 6 KRIIKETEKLVSD-PVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPM 64
Query: 65 EPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDA 124
E PK+ F+TK++HPNI + G ICLD+LK WSPAL ++T LLS+QALL++P P+DP
Sbjct: 65 EAPKVRFLTKIYHPNID-RLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLAN 123
Query: 125 VVAQQYLKDHQTFLSTARYWTESFAK 150
VA+ ++K+ Q + AR WT+ +AK
Sbjct: 124 DVAEDWIKNEQGAKAKAREWTKLYAK 149
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 137 bits (344), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 68/145 (46%), Positives = 94/145 (64%), Gaps = 2/145 (1%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
R+ KE ++ D GI P DNL + I GP +PYE G F L++ LPD YP E
Sbjct: 9 RIIKETEKLVSD-PVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 67
Query: 66 PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
PK+ F+TK++HPNI + G ICLD+LK WSPAL ++T LLS+QALL++P P+DP
Sbjct: 68 APKVRFLTKIYHPNID-RLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLAND 126
Query: 126 VAQQYLKDHQTFLSTARYWTESFAK 150
VA+ ++K+ Q + AR WT+ +AK
Sbjct: 127 VAEDWIKNEQGAKAKAREWTKLYAK 151
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 136 bits (343), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
Query: 4 FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
R+QKEL + +D A PV D+L H I GP + Y+GG F L + P YP
Sbjct: 9 LKRIQKELSDLQRDPPAH-CSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 67
Query: 64 FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
F+PPK+ F TK++HPNI+S +G+ICLDIL+ QWSPALT+ LLS+ +LL P PDDP
Sbjct: 68 FKPPKIAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV 126
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
+AQ Y D + + AR WT+ +A
Sbjct: 127 PDIAQIYKSDKEKYNRHAREWTQKYA 152
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 136 bits (343), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
Query: 4 FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
R+QKEL + +D A PV D+L H I GP + Y+GG F L + P YP
Sbjct: 21 LKRIQKELSDLQRDPPAH-CSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 79
Query: 64 FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
F+PPK+ F TK++HPNI+S +G+ICLDIL+ QWSPALT+ LLS+ +LL P PDDP
Sbjct: 80 FKPPKIAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV 138
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
+AQ Y D + + AR WT+ +A
Sbjct: 139 PDIAQIYKSDKEKYNRHAREWTQKYA 164
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 136 bits (343), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
Query: 4 FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
R+QKEL + +D A PV D+L H I GP + Y+GG F L + P YP
Sbjct: 5 LKRIQKELSDLQRDPPAH-CSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 63
Query: 64 FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
F+PPK+ F TK++HPNI+S +G+ICLDIL+ QWSPALT+ LLS+ +LL P PDDP
Sbjct: 64 FKPPKIAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV 122
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
+AQ Y D + + AR WT+ +A
Sbjct: 123 PDIAQIYKSDKEKYNRHAREWTQKYA 148
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 136 bits (342), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
Query: 4 FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
R+ KEL + ++D A PV D++ H I GP +PY+GG F L I P YP
Sbjct: 5 LKRIHKELNDLARDPPAQ-CSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 64 FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
F+PPK+ F T+++HPNI+S +G+ICLDIL+ QW PALT+ LLS+ +LL P PDDP
Sbjct: 64 FKPPKVAFTTRIYHPNINS-NGSICLDILRSQWGPALTISKVLLSICSLLCDPNPDDPLV 122
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
+A+ Y D + + AR WT+ +A
Sbjct: 123 PEIARIYKTDREKYNRIAREWTQKYA 148
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 91/144 (63%), Gaps = 2/144 (1%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
R+ KEL + ++D A PV D++ H I GP +PY+GG F L I P YPF+
Sbjct: 15 RINKELSDLARDPPAQ-CSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 73
Query: 66 PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
PPK+ F T+++HPNI+S +G+ICLDIL+ QWSPALT+ LLS+ +LL P PDDP
Sbjct: 74 PPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 132
Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
+A+ Y D + +R WT+ +A
Sbjct: 133 IARIYKTDRDKYNRISREWTQKYA 156
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 135 bits (340), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
Query: 4 FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
R+ KEL + ++D A PV D++ H I GP +PY+GG F L I P YP
Sbjct: 5 LKRIHKELNDLARDPPAQ-CSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 64 FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
F+PPK+ F T+++HPNI+S +G+ICLD L+ QWSPALT+ LLS+ +LL P PDDP
Sbjct: 64 FKPPKVAFTTRIYHPNINS-NGSICLDALRSQWSPALTISKVLLSICSLLCDPNPDDPLV 122
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
+A+ Y D + + AR WT+ +A
Sbjct: 123 PEIARIYKTDREKYNRIAREWTQKYA 148
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 135 bits (340), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
Query: 4 FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
R+ KEL + ++D A PV D++ H GP +PY+GG F L I P YP
Sbjct: 5 LKRIHKELNDLARDPPAQ-CSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 64 FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
F+PPK+ F T+++HPNI+S +G+ICLDIL+ QWSPALT+ LLS+ +LL P PDDP
Sbjct: 64 FKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 122
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
+A+ Y D + + AR WT+ +A
Sbjct: 123 PEIARIYKTDREKYNRIAREWTQKYA 148
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
Query: 4 FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
R+ KEL + ++D A PV D++ H I GP +PY+GG F L I P YP
Sbjct: 2 LKRINKELSDLARDPPAQ-CSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 64 FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
F+PPK+ F T+++HPNI+S +G+ICLDIL+ QWSPALT+ LLS+ +LL P PDDP
Sbjct: 61 FKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 119
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
+A+ Y D + +R WT+ +A
Sbjct: 120 PEIARIYKTDRDKYNRISREWTQKYA 145
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 91/144 (63%), Gaps = 2/144 (1%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
R+ KEL + ++D A PV D++ H I GP +PY+GG F L I P YPF+
Sbjct: 7 RINKELSDLARDPPAQ-CSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 66 PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
PPK+ F T+++HPNI+S +G+ICLDIL+ QWSPALT+ LLS+ +LL P PDDP
Sbjct: 66 PPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 124
Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
+A+ Y D + +R WT+ +A
Sbjct: 125 IARIYKTDRDKYNRISREWTQKYA 148
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 91/144 (63%), Gaps = 2/144 (1%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
R+ KEL + ++D A PV D++ H I GP +PY+GG F L I P YPF+
Sbjct: 13 RINKELSDLARDPPAQ-CSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 71
Query: 66 PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
PPK+ F T+++HPNI+S +G+ICLDIL+ QWSPALT+ LLS+ +LL P PDDP
Sbjct: 72 PPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 130
Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
+A+ Y D + +R WT+ +A
Sbjct: 131 IARIYKTDRDKYNRISREWTQKYA 154
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 133 bits (335), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
Query: 4 FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
R+ KEL + ++D A PV D++ H I GP +PY+GG F L I P YP
Sbjct: 6 LKRIHKELNDLARDPPAQ-CSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 64
Query: 64 FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
F+PPK+ F T+++HPNI+S +G+I LDIL+ QWSPALT+ LLS+ +LL P PDDP
Sbjct: 65 FKPPKVAFTTRIYHPNINS-NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 123
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
+A+ Y D + + AR WT+ +A
Sbjct: 124 PEIARIYKTDREKYNRIAREWTQKYA 149
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 133 bits (335), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
Query: 4 FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
R+ KEL + ++D A PV D++ H I GP +PY+GG F L I P YP
Sbjct: 21 LKRIHKELNDLARDPPAQ-CSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 79
Query: 64 FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
F+PPK+ F T+++HPNI+S +G+I LDIL+ QWSPALT+ LLS+ +LL P PDDP
Sbjct: 80 FKPPKVAFTTRIYHPNINS-NGSIXLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 138
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
+A+ Y D + + AR WT+ +A
Sbjct: 139 PEIARIYKTDREKYNRIAREWTQKYA 164
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 133 bits (334), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 67/145 (46%), Positives = 93/145 (64%), Gaps = 2/145 (1%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
R+ KE ++ D GI P DNL + I GP +PYE G F L++ LPD YP E
Sbjct: 7 RIIKETEKLVSD-PVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 66 PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
PK+ F+TK++HPNI + G I LD+LK WSPAL ++T LLS+QALL++P P+DP
Sbjct: 66 APKVRFLTKIYHPNID-RLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLAND 124
Query: 126 VAQQYLKDHQTFLSTARYWTESFAK 150
VA+ ++K+ Q + AR WT+ +AK
Sbjct: 125 VAEDWIKNEQGAKAKAREWTKLYAK 149
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 132 bits (333), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
Query: 4 FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
R+QKEL + +D A + PV D+L H I GP + Y+GG F L + P YP
Sbjct: 9 LKRIQKELSDLQRDPPAH-CRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 67
Query: 64 FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
F+PPK+ F TK++HPNI+S +G+I LDIL+ QWSPALT+ LLS+ +LL P PDDP
Sbjct: 68 FKPPKIAFTTKIYHPNINS-NGSIKLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV 126
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
+AQ Y D + + AR WT+ +A
Sbjct: 127 PDIAQIYKSDKEKYNRHAREWTQKYA 152
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
Query: 4 FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
R+ KEL + ++D A + PV D++ H I GP +PY+GG F L I P YP
Sbjct: 3 LKRIHKELNDLARDPPAQ-CRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 61
Query: 64 FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
F+PPK+ F T+++HP I+S +G+I LDIL+ QWSPALT+ LLS+ +LL P PDDP
Sbjct: 62 FKPPKVAFTTRIYHPAINS-NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 120
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
+A+ Y D + + AR WT+ +A
Sbjct: 121 PEIARIYKTDREKYNRIAREWTQKYA 146
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 90/144 (62%), Gaps = 2/144 (1%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
R+ KEL + ++D A PV D++ H I GP +PY+GG F L I P YPF+
Sbjct: 4 RIHKELNDLARDPPAQ-CSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 62
Query: 66 PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
PPK+ F T+++HPNI+S +G+I LDIL+ QWSPAL + LLS+ +LL P PDDP
Sbjct: 63 PPKVAFTTRIYHPNINS-NGSISLDILRSQWSPALKISKVLLSICSLLCDPNPDDPLVPE 121
Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
+A+ Y D + + AR WT+ +A
Sbjct: 122 IARIYKTDREKYNRIAREWTQKYA 145
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 90/144 (62%), Gaps = 2/144 (1%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
R+ KEL + ++D A PV D++ H I GP +PY+GG F L I P YPF+
Sbjct: 5 RINKELSDLARDPPAQ-CSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 66 PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
PPK+ F T+++HPNI+S +G+I LDIL+ QWSPALT+ LLS+ +LL P PDDP
Sbjct: 64 PPKVAFTTRIYHPNINS-NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 122
Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
+A+ Y D + +R WT+ +A
Sbjct: 123 IARIYKTDRDKYNRISREWTQKYA 146
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 130 bits (326), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 92/145 (63%), Gaps = 2/145 (1%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
R+ KE ++ D GI P DNL + I GP +PYE G F L++ LPD YP E
Sbjct: 7 RIIKETEKLVSD-PVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 66 PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
PK+ F+TK++HP I + G I LD+LK WSPAL ++T LLS+QALL++P P+DP
Sbjct: 66 APKVRFLTKIYHPAID-RLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLAND 124
Query: 126 VAQQYLKDHQTFLSTARYWTESFAK 150
VA+ ++K+ Q + AR WT+ +AK
Sbjct: 125 VAEDWIKNEQGAKAKAREWTKLYAK 149
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 86/144 (59%), Gaps = 2/144 (1%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
R+QKEL E + D P DN+ I GP G+ YEGG F LDIT YPF+
Sbjct: 7 RIQKELAEITLD-PPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFK 65
Query: 66 PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
PPK+ F T+++H NI+SQ G ICLDILKD WSPALT+ LLS+ +LL+ P DP
Sbjct: 66 PPKVTFRTRIYHCNINSQ-GVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGS 124
Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
+A QY+ + AR WT+ +A
Sbjct: 125 IATQYMTNRAEHDRMARQWTKRYA 148
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 127 bits (318), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 86/144 (59%), Gaps = 2/144 (1%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
R+QKEL + + D P DN+ I GP G+ YEGG F LDIT YPF+
Sbjct: 52 RIQKELADITLD-PPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFK 110
Query: 66 PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
PPK+ F T+++H NI+SQ G ICLDILKD WSPALT+ LLS+ +LL+ P DP
Sbjct: 111 PPKVTFRTRIYHCNINSQ-GVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGS 169
Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
+A QY+ + AR WT+ +A
Sbjct: 170 IATQYMTNRAEHDRMARQWTKRYA 193
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 93/160 (58%), Gaps = 6/160 (3%)
Query: 5 SRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPF 64
SR+++EL + + GI D + L I G TPYE G F+L++ +P+ YPF
Sbjct: 7 SRLKRELHMLATE-PPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPF 65
Query: 65 EPPKMHFVTKVWHPNISSQSGAICLDIL----KDQWSPALTLKTALLSVQALLSAPAPDD 120
EPP++ F+T ++HPNI S +G ICLD+L K W P+L + T L S+Q L+S P PDD
Sbjct: 66 EPPQIRFLTPIYHPNIDS-AGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDD 124
Query: 121 PQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKV 160
P A ++ ++ + FL AR WTE A+ EE++
Sbjct: 125 PLMADISSEFKYNKPAFLKNARQWTEKHARQKQKADEEEM 164
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 84/137 (61%), Gaps = 9/137 (6%)
Query: 1 MIDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPD 60
M DF R+Q++ G+ P +N++ +I GP GTP+E GTF+L I +
Sbjct: 10 MRDFKRLQED--------PPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSE 61
Query: 61 GYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDD 120
YP +PP + F++K++HPN+ + G+ICLDIL+++WSP + + L S+Q+LL P P+
Sbjct: 62 EYPNKPPTVRFLSKMFHPNVYA-DGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNS 120
Query: 121 PQDAVVAQQYLKDHQTF 137
P ++ AQ Y ++ + +
Sbjct: 121 PANSQAAQLYQENKREY 137
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 84/132 (63%), Gaps = 2/132 (1%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
R+ ++ ++ +D A G+ P DN++ II GP TP+E GTF+L + + YP +
Sbjct: 8 RLMRDFKKLQEDPPA-GVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 66 PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
PP + F++K++HPN+ + G+ICLDIL+++WSP + L S+Q+LL P P+ P +++
Sbjct: 67 PPTVKFISKMFHPNVYA-DGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSL 125
Query: 126 VAQQYLKDHQTF 137
AQ Y ++ + +
Sbjct: 126 AAQLYQENRREY 137
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 94/163 (57%), Gaps = 21/163 (12%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
R+ ++ ++ +D A G+ P DN++ II GP TP+E GTF+L + + YP +
Sbjct: 11 RLMRDFKKLQEDPPA-GVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 69
Query: 66 PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
PP + F++K++HPN+ + G+ICLDIL+++WSP + L S+Q+LL P P+ P +++
Sbjct: 70 PPTVKFISKMFHPNVYA-DGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSL 128
Query: 126 VAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQKLVEMGF 168
AQ Y ++ + + E++VQ++VE +
Sbjct: 129 AAQLYQENRREY-------------------EKRVQQIVEQSW 152
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 84/142 (59%), Gaps = 9/142 (6%)
Query: 1 MIDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPD 60
M DF R+Q++ +GI P +N++ +I GP TP++GGTF+L + +
Sbjct: 10 MRDFKRLQQD--------PPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSE 61
Query: 61 GYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDD 120
YP +PP + FV++++HPNI + G+ICLDIL++QWSP + L S+Q+LL P P+
Sbjct: 62 DYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120
Query: 121 PQDAVVAQQYLKDHQTFLSTAR 142
P ++ A+ Y + + + R
Sbjct: 121 PANSEAARMYSESKREYNRRVR 142
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 83/140 (59%), Gaps = 2/140 (1%)
Query: 7 VQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEP 66
V KE+ + D GIKV P ++L L I GP GTPY GG FR+ + L +P P
Sbjct: 18 VYKEVTTLTAD-PPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASP 76
Query: 67 PKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVV 126
PK +F+TK++HPN+ + +G IC+++LK W+ L ++ LL+++ LL P P+ +
Sbjct: 77 PKGYFLTKIFHPNVGA-NGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEA 135
Query: 127 AQQYLKDHQTFLSTARYWTE 146
+ L++++ + + AR TE
Sbjct: 136 GRLLLENYEEYAARARLLTE 155
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 83/136 (61%), Gaps = 10/136 (7%)
Query: 1 MIDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPD 60
M DF R++++ G+ +P+ DN++ +I GP TPYE GTFRL + +
Sbjct: 10 MRDFKRMKEDA--------PPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDE 61
Query: 61 GYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDD 120
YP +PP + F+++++HPN+ + +G ICLDIL+++W+P + + L S+Q+L + P P
Sbjct: 62 EYPNKPPHVKFLSEMFHPNVYA-NGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPAS 120
Query: 121 PQDAVVAQQYLKDHQT 136
P + V A KDH++
Sbjct: 121 PAN-VEAATLFKDHKS 135
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 81/146 (55%), Gaps = 3/146 (2%)
Query: 5 SRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPF 64
R+ KEL+E K + + NL+ G+I P PY+ G FR++I P YPF
Sbjct: 5 RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPF 63
Query: 65 EPPKMHFVTKVWHPNISSQSGAICLDILK-DQWSPALTLKTALLSVQALLSAPAPDDPQD 123
+PPK+ F TK++HPNI + G +CL ++ + W PA + S+ AL++ P P+ P
Sbjct: 64 KPPKITFKTKIYHPNI-DEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLR 122
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
A +A++Y KD + F A +T+ +
Sbjct: 123 ADLAEEYSKDRKKFCKNAEEFTKKYG 148
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 81/145 (55%), Gaps = 3/145 (2%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
R+ KEL+E K + + NL+ G+I P PY+ G FR++I P YPF+
Sbjct: 8 RLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFK 66
Query: 66 PPKMHFVTKVWHPNISSQSGAICLDILK-DQWSPALTLKTALLSVQALLSAPAPDDPQDA 124
PPK+ F TK++HPNI + G +CL ++ + W PA + S+ AL++ P P+ P A
Sbjct: 67 PPKITFKTKIYHPNI-DEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRA 125
Query: 125 VVAQQYLKDHQTFLSTARYWTESFA 149
+A++Y KD + F A +T+ +
Sbjct: 126 DLAEEYSKDRKKFCKNAEEFTKKYG 150
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 96.3 bits (238), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 81/145 (55%), Gaps = 6/145 (4%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
R+Q+EL + GI P SDNL G I G GT YE ++L + P GYP+
Sbjct: 34 RLQQELMTLMMSGD-KGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYN 92
Query: 66 PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
P + F+T +HPN+ +Q G I LDILK++WS ++T LLS+Q+LL P D P +
Sbjct: 93 APTVKFLTPCYHPNVDTQ-GNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTH 151
Query: 126 VAQQYLKDHQTFLSTARYWTESFAK 150
A+ + K+ F +Y E+++K
Sbjct: 152 AAELW-KNPTAF---KKYLQETYSK 172
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 70/127 (55%), Gaps = 4/127 (3%)
Query: 7 VQKELQECSKDIEASG---IKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
V K LQ+ + + SG I P DNL + GP T YE ++L + P YP
Sbjct: 10 VSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYP 69
Query: 64 FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
++PP + F T WHPN+ QSG ICLDILK+ W+ + ++T LLS+Q+LL P P +
Sbjct: 70 YKPPVVKFTTPCWHPNV-DQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLN 128
Query: 124 AVVAQQY 130
A A +
Sbjct: 129 AQAADMW 135
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 93.2 bits (230), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 79/155 (50%), Gaps = 9/155 (5%)
Query: 2 IDFSRVQKELQECSKDIEASGIKVTPVSD-----NLVHLTGIIPGPVGTPYEGGTFRLDI 56
I SR+ +E + KD G P + NL++ IPG GTP+EGG F+L +
Sbjct: 7 IALSRLAQERKAWRKD-HPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 65
Query: 57 TLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLS 114
D YP PPK F ++HPN++ SG +CL IL++ W PA+T+K LL +Q LL+
Sbjct: 66 LFKDDYPSSPPKCKFEPPLFHPNVAP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 115 APAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA 149
P DP A Y ++ + R + FA
Sbjct: 125 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 78/155 (50%), Gaps = 9/155 (5%)
Query: 2 IDFSRVQKELQECSKDIEASGIKVTPVSD-----NLVHLTGIIPGPVGTPYEGGTFRLDI 56
I SR+ +E + KD G P + NL++ IPG GTP+EGG F+L +
Sbjct: 6 IALSRLAQERKAWRKD-HPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 64
Query: 57 TLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLS 114
D YP PPK F ++HPN+ SG +CL IL++ W PA+T+K LL +Q LL+
Sbjct: 65 LFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLN 123
Query: 115 APAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA 149
P DP A Y ++ + R + FA
Sbjct: 124 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 158
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 78/155 (50%), Gaps = 9/155 (5%)
Query: 2 IDFSRVQKELQECSKDIEASGIKVTPVSD-----NLVHLTGIIPGPVGTPYEGGTFRLDI 56
I SR+ +E + KD G P + NL++ IPG GTP+EGG F+L +
Sbjct: 6 IALSRLAQERKAWRKD-HPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 64
Query: 57 TLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLS 114
D YP PPK F ++HPN+ SG +CL IL++ W PA+T+K LL +Q LL+
Sbjct: 65 LFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLN 123
Query: 115 APAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA 149
P DP A Y ++ + R + FA
Sbjct: 124 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 158
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 78/155 (50%), Gaps = 9/155 (5%)
Query: 2 IDFSRVQKELQECSKDIEASGIKVTPVSD-----NLVHLTGIIPGPVGTPYEGGTFRLDI 56
I SR+ +E + KD G P + NL++ IPG GTP+EGG F+L +
Sbjct: 5 IALSRLAQERKAWRKD-HPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 63
Query: 57 TLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLS 114
D YP PPK F ++HPN+ SG +CL IL++ W PA+T+K LL +Q LL+
Sbjct: 64 LFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLN 122
Query: 115 APAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA 149
P DP A Y ++ + R + FA
Sbjct: 123 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 157
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 78/155 (50%), Gaps = 9/155 (5%)
Query: 2 IDFSRVQKELQECSKDIEASGIKVTPVSD-----NLVHLTGIIPGPVGTPYEGGTFRLDI 56
I SR+ +E + KD G P + NL++ IPG GTP+EGG F+L +
Sbjct: 4 IALSRLAQERKAWRKD-HPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 62
Query: 57 TLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLS 114
D YP PPK F ++HPN+ SG +CL IL++ W PA+T+K LL +Q LL+
Sbjct: 63 LFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLN 121
Query: 115 APAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA 149
P DP A Y ++ + R + FA
Sbjct: 122 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 78/155 (50%), Gaps = 9/155 (5%)
Query: 2 IDFSRVQKELQECSKDIEASGIKVTPVSD-----NLVHLTGIIPGPVGTPYEGGTFRLDI 56
I SR+ +E + KD G P + NL++ IPG GTP+EGG F+L +
Sbjct: 7 IALSRLAQERKAWRKD-HPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 65
Query: 57 TLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLS 114
D YP PPK F ++HPN+ SG +CL IL++ W PA+T+K LL +Q LL+
Sbjct: 66 LFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 115 APAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA 149
P DP A Y ++ + R + FA
Sbjct: 125 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 78/155 (50%), Gaps = 9/155 (5%)
Query: 2 IDFSRVQKELQECSKDIEASGIKVTPVSD-----NLVHLTGIIPGPVGTPYEGGTFRLDI 56
I SR+ +E + KD G P + NL++ IPG GTP+EGG F+L +
Sbjct: 9 IALSRLAQERKAWRKD-HPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 67
Query: 57 TLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLS 114
D YP PPK F ++HPN+ SG +CL IL++ W PA+T+K LL +Q LL+
Sbjct: 68 LFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLN 126
Query: 115 APAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA 149
P DP A Y ++ + R + FA
Sbjct: 127 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 161
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Query: 41 GPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPAL 100
GP GTPYEGG +++ + LPD YPF+ P + F+ K++HPNI SG +CLD++ W+
Sbjct: 59 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALY 118
Query: 101 TLKTALLS-VQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEK 159
L S + LL+ P P DP + A YL + + + + + +A +L +E+
Sbjct: 119 DLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATEEALKEQEE 178
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 89.7 bits (221), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 77/155 (49%), Gaps = 9/155 (5%)
Query: 2 IDFSRVQKELQECSKDIEASGIKVTPVSD-----NLVHLTGIIPGPVGTPYEGGTFRLDI 56
I SR+ +E + KD G P + NL++ IPG GTP+EGG F+L +
Sbjct: 7 IALSRLAQERKAWRKD-HPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 65
Query: 57 TLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLS 114
D YP PPK F ++HPN+ SG +CL IL++ W PA+T+K LL +Q LL+
Sbjct: 66 LFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 115 APAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA 149
P P A Y ++ + R + FA
Sbjct: 125 EPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 77/155 (49%), Gaps = 9/155 (5%)
Query: 2 IDFSRVQKELQECSKDIEASGIKVTPVSD-----NLVHLTGIIPGPVGTPYEGGTFRLDI 56
I SR+ +E + KD G P + NL++ IPG GTP+EGG F+L +
Sbjct: 7 IALSRLAQERKAWRKD-HPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 65
Query: 57 TLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLS 114
D YP PPK F ++HP + SG +CL IL++ W PA+T+K LL +Q LL+
Sbjct: 66 LFKDDYPSSPPKCKFEPPLFHPQVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 115 APAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA 149
P DP A Y ++ + R + FA
Sbjct: 125 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
Query: 41 GPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPAL 100
GP GT YEGG +++ +TLPD YPF P + F+ K+ HPN+ SG++CLD++ W+P
Sbjct: 37 GPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLY 96
Query: 101 TLKTAL-LSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA 149
+L + + LL+ P P DP ++ A +KD + + + + +A
Sbjct: 97 SLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYA 146
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 77/155 (49%), Gaps = 9/155 (5%)
Query: 2 IDFSRVQKELQECSKDIEASGIKVTPVSD-----NLVHLTGIIPGPVGTPYEGGTFRLDI 56
I SR+ +E + KD G P + NL++ IPG GTP+EGG F+L +
Sbjct: 7 IALSRLAQERKAWRKD-HPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 65
Query: 57 TLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLS 114
D YP PPK F ++HPN+ SG +CL IL++ W PA+T+K LL +Q LL+
Sbjct: 66 LFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 115 APAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA 149
P P A Y ++ + R + FA
Sbjct: 125 EPNIQAPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 77/155 (49%), Gaps = 9/155 (5%)
Query: 2 IDFSRVQKELQECSKDIEASGIKVTPVSD-----NLVHLTGIIPGPVGTPYEGGTFRLDI 56
I SR+ +E + KD G P + NL++ IPG GTP+EGG F+L +
Sbjct: 4 IALSRLAQERKAWRKD-HPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 62
Query: 57 TLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLS 114
D YP PPK F ++HPN+ SG + L IL++ W PA+T+K LL +Q LL+
Sbjct: 63 LFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVSLSILEEDKDWRPAITIKQILLGIQELLN 121
Query: 115 APAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA 149
P DP A Y ++ + R + FA
Sbjct: 122 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 79/143 (55%), Gaps = 16/143 (11%)
Query: 7 VQKELQECSKDIEASGIKVTPVSDN-LVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
++++L E +K+ G + DN L +I GP T YEGG F+ +T P YP
Sbjct: 22 LRRQLAELNKN-PVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLR 80
Query: 66 PPKMHFVTKVWHPNISSQSGAICLDIL-------------KDQWSPALTLKTALLSVQAL 112
PPKM F+T++WHPN+ ++G +C+ IL +++W P T++T ++SV ++
Sbjct: 81 PPKMKFITEIWHPNV-DKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISM 139
Query: 113 LSAPAPDDPQDAVVAQQYLKDHQ 135
L+ P D P + A+++ +D
Sbjct: 140 LADPNGDSPANVDAAKEWREDRN 162
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 77/155 (49%), Gaps = 9/155 (5%)
Query: 2 IDFSRVQKELQECSKDIEASGIKVTPVSD-----NLVHLTGIIPGPVGTPYEGGTFRLDI 56
I SR+ +E + KD G P + NL++ IPG GTP+EGG F+L +
Sbjct: 4 IALSRLAQERKAWRKD-HPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 62
Query: 57 TLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLS 114
D YP PPK F ++HPN+ SG + L IL++ W PA+T+K LL +Q LL+
Sbjct: 63 LFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVXLSILEEDKDWRPAITIKQILLGIQELLN 121
Query: 115 APAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA 149
P DP A Y ++ + R + FA
Sbjct: 122 EPNIQDPAQAEAYTIYXQNRVEYEKRVRAQAKKFA 156
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 24 KVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQ 83
KV P SD + GP GTPYE GT+ L + LP YPF+ P + F ++ HPN+ +
Sbjct: 30 KVYP-SDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDER 88
Query: 84 SGAICLDILKDQWSPALTLKTAL-LSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTAR 142
SG++CLD++ W+P L+ + + LL P P DP + A D F + R
Sbjct: 89 SGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLR 148
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 72/140 (51%), Gaps = 7/140 (5%)
Query: 4 FSRVQKELQECSKD----IEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLP 59
R+Q+E ++ KD A +K S +L IPG GT + GG + + + P
Sbjct: 6 LQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYP 65
Query: 60 DGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLSAPA 117
+ YP +PPK+ F +HPN+ SG ICL IL + W PA+TLK +L VQ LL +P
Sbjct: 66 NEYPSKPPKVKFPAGFYHPNVYP-SGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPN 124
Query: 118 PDDPQDAVVAQQYLKDHQTF 137
P+ P + + ++ +
Sbjct: 125 PNSPAQEPAWRSFSRNKAEY 144
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
Query: 6 RVQKELQECSKD----IEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDG 61
R+Q+E ++ KD A +K S +L IPG GT + GG + + + P+
Sbjct: 10 RLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNE 69
Query: 62 YPFEPPKMHFVTKVWHPNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLSAPAPD 119
YP +PPK+ F +HPN+ SG ICL IL + W PA+TLK +L VQ LL +P P+
Sbjct: 70 YPSKPPKVKFPAGFYHPNVYP-SGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPN 128
Query: 120 DPQDAVVAQQYLKDHQTF 137
P + + ++ +
Sbjct: 129 SPAQEPAWRSFSRNKAEY 146
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 77/145 (53%), Gaps = 16/145 (11%)
Query: 7 VQKELQECSKDIEASGIKVTPVSDNLVH-LTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
++K+L + + + G V DN ++ ++ GP T YEGG F+ + P YP +
Sbjct: 8 LKKQLADMRR-VPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQK 66
Query: 66 PPKMHFVTKVWHPNISSQSGAICLDILKD-------------QWSPALTLKTALLSVQAL 112
PPKM F++++WHPNI + G +C+ IL D +W P T++T LLSV ++
Sbjct: 67 PPKMKFISEIWHPNIDKE-GNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISM 125
Query: 113 LSAPAPDDPQDAVVAQQYLKDHQTF 137
L+ P + P + A+ +++ F
Sbjct: 126 LTDPNFESPANVDAAKMQRENYAEF 150
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 7/144 (4%)
Query: 5 SRVQKELQECSKD----IEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPD 60
+R+Q+E ++ +D A K + +L++ IPG T +EGG ++L + P+
Sbjct: 13 TRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPE 72
Query: 61 GYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQ--WSPALTLKTALLSVQALLSAPAP 118
YP PPK F ++HPN+ SG +CL IL ++ W PA+T+K LL +Q LL P
Sbjct: 73 EYPTRPPKCRFTPPLFHPNVYP-SGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNI 131
Query: 119 DDPQDAVVAQQYLKDHQTFLSTAR 142
P + KD + R
Sbjct: 132 ASPAQTEAYTMFKKDKVEYEKRVR 155
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 79/150 (52%), Gaps = 9/150 (6%)
Query: 9 KELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPK 68
KE+ E ++ + KV N +H + P Y+GG F+ + +PD Y PPK
Sbjct: 21 KEVAELEANLPCT-CKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPK 79
Query: 69 MHFVTKVWHPNISSQSGAICLDILKDQ------WSPALTLKTALLSVQALLSAPAP-DDP 121
+ +TK+WHPNI +++G ICL +L++ W+P TLK + + +L + DDP
Sbjct: 80 VKCLTKIWHPNI-TETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDP 138
Query: 122 QDAVVAQQYLKDHQTFLSTARYWTESFAKT 151
+ A+ +L+D + F + + + +A++
Sbjct: 139 LNIEAAEHHLRDKEDFRNKVDDYIKRYARS 168
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 69/127 (54%), Gaps = 8/127 (6%)
Query: 31 NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLD 90
N +H + P Y+GG F+ + +PD Y PPK+ +TK+WHPNI +++G ICL
Sbjct: 42 NKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNI-TETGEICLS 100
Query: 91 ILKDQ------WSPALTLKTALLSVQALLSAPAP-DDPQDAVVAQQYLKDHQTFLSTARY 143
+L++ W+P TLK + + +L + DDP + A+ +L+D + F +
Sbjct: 101 LLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDD 160
Query: 144 WTESFAK 150
+ + +A+
Sbjct: 161 YIKRYAR 167
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 15/125 (12%)
Query: 22 GIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI 80
G +VT V + +L + I GP T YEGG F+ + P YP+ PP F+TK+WHPNI
Sbjct: 26 GFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNI 85
Query: 81 SSQSGAICLDIL-------------KDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVA 127
++G +C+ IL ++W+P ++T LLSV +LL+ P P + +
Sbjct: 86 -YETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDAS 144
Query: 128 QQYLK 132
Y K
Sbjct: 145 VMYRK 149
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 15/125 (12%)
Query: 22 GIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI 80
G +VT V + +L + I GP T YEGG F+ + P YP+ PP F+TK+WHPNI
Sbjct: 23 GFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNI 82
Query: 81 SSQSGAICLDIL-------------KDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVA 127
++G +C+ IL ++W+P ++T LLSV +LL+ P P + +
Sbjct: 83 -YETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDAS 141
Query: 128 QQYLK 132
Y K
Sbjct: 142 VMYRK 146
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 37 GIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFV-TKVWHPNISSQSGAICLDILK-D 94
II GP TPYE FR+ I +P YP PPK+ F+ + H N+ S +G ICL+ILK +
Sbjct: 52 AIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLNILKPE 111
Query: 95 QWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQ 128
+W+P L + +V LL P D P D +
Sbjct: 112 EWTPVWDLLHCVHAVWRLLREPVSDSPLDVDIGN 145
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 37 GIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFV-TKVWHPNISSQSGAICLDILK-D 94
II GP TPYE FR+ I +P YP PPK+ F+ + H N+ S +G ICL+ILK +
Sbjct: 52 AIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPE 111
Query: 95 QWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQ 128
+W+P L + +V LL P D P D +
Sbjct: 112 EWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGN 145
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 37 GIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFV-TKVWHPNISSQSGAICLDILK-D 94
II GP TPYE FR+ I +P YP PPK+ F+ + H N+ S +G ICL+ILK +
Sbjct: 52 AIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPE 111
Query: 95 QWSPALTLKTALLSVQALLSAPAPDDPQDA 124
+W+P L + +V LL P D P D
Sbjct: 112 EWTPVWDLLHCVHAVWRLLREPVCDSPLDV 141
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 65/125 (52%), Gaps = 16/125 (12%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSDNLVHL-TGIIPGPVGTPYEGGTFRLDITLPDGYPF 64
R+ KELQ+ KD GI P S+N + + +I GP TPY G F + P YP
Sbjct: 8 RLLKELQQLIKD-SPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPL 66
Query: 65 EPPKMHFVTKVWHPNISSQSGAICLDIL-------------KDQWSPALTLKTALLSVQA 111
PPK+ F + HPNI +G +C+ IL +++WSP +++ LLSV +
Sbjct: 67 SPPKLTFTPSILHPNIYP-NGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMS 125
Query: 112 LLSAP 116
+LS P
Sbjct: 126 MLSEP 130
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 12/136 (8%)
Query: 6 RVQKELQECS----KDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDG 61
R+QK++ E + DI S D+L++ +I G Y+ G F + G
Sbjct: 10 RIQKDINELNLPKTCDISFSD------PDDLLNFKLVICPDEGF-YKSGKFVFSFKVGQG 62
Query: 62 YPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDP 121
YP +PPK+ T V+HPNI + G +CL+IL++ W P LT+ + + +Q L P P+DP
Sbjct: 63 YPHDPPKVKCETXVYHPNIDLE-GNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDP 121
Query: 122 QDAVVAQQYLKDHQTF 137
+ A+ + + F
Sbjct: 122 LNKEAAEVLQNNRRLF 137
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 69/133 (51%), Gaps = 2/133 (1%)
Query: 16 KDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKV 75
K+ GI PVS++++ I G + ++G F+L I Y + PP + F+T
Sbjct: 36 KENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIP 95
Query: 76 WHPNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKD 133
+HPN+ +G C+D L + +W+ TL + LL++Q +LS P ++P + A+ +KD
Sbjct: 96 FHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKD 155
Query: 134 HQTFLSTARYWTE 146
+ + R +
Sbjct: 156 ESLYRTILRLFNR 168
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 47 YEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTAL 106
Y G+ ++ + YP EPPK+ + K++HPNI + G +CL+IL++ WSPAL L++ +
Sbjct: 77 YNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLK-GNVCLNILREDWSPALDLQSII 135
Query: 107 LSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTAR 142
+ L P P+DP + A+ + + F R
Sbjct: 136 TGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVR 171
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 12/136 (8%)
Query: 6 RVQKELQECS----KDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDG 61
R+QK++ E + DI S D+L++ +I G Y+ G F + G
Sbjct: 30 RIQKDINELNLPKTCDISFSD------PDDLLNFKLVICPDEGF-YKSGKFVFSFKVGQG 82
Query: 62 YPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDP 121
YP +PPK+ T V+HPNI + G + L+IL++ W P LT+ + + +Q L P P+DP
Sbjct: 83 YPHDPPKVKCETMVYHPNIDLE-GNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDP 141
Query: 122 QDAVVAQQYLKDHQTF 137
+ A+ + + F
Sbjct: 142 LNKEAAEVLQNNRRLF 157
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 15/135 (11%)
Query: 22 GIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI 80
GI P+++ N +I GP T +E G F ++ P YP PPKM F +++HPNI
Sbjct: 28 GIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 87
Query: 81 SSQSGAICLDILK-------------DQWSPALTLKTALLSVQALLSAPAPDDPQDAVVA 127
G +C+ IL ++WSP +++ LLSV ++L+ P + + +
Sbjct: 88 YPD-GRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDAS 146
Query: 128 QQYLKDHQTFLSTAR 142
+ + D + F A+
Sbjct: 147 KMWRDDREQFYKIAK 161
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 15/135 (11%)
Query: 22 GIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI 80
GI P+++ N +I GP T +E G F ++ P YP PPKM F +++HPNI
Sbjct: 22 GIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 81
Query: 81 SSQSGAICLDILK-------------DQWSPALTLKTALLSVQALLSAPAPDDPQDAVVA 127
G +C+ IL ++WSP +++ LLSV ++L+ P + + +
Sbjct: 82 YP-DGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDAS 140
Query: 128 QQYLKDHQTFLSTAR 142
+ + D + F A+
Sbjct: 141 KMWRDDREQFYKIAK 155
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 15/135 (11%)
Query: 22 GIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI 80
GI P+++ N +I GP T +E G F ++ P YP PPKM F +++HPNI
Sbjct: 25 GIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 84
Query: 81 SSQSGAICLDILK-------------DQWSPALTLKTALLSVQALLSAPAPDDPQDAVVA 127
G +C+ IL ++WSP +++ LLSV ++L+ P + + +
Sbjct: 85 YP-DGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDAS 143
Query: 128 QQYLKDHQTFLSTAR 142
+ + D + F A+
Sbjct: 144 KMWRDDREQFYKIAK 158
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 15/135 (11%)
Query: 22 GIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI 80
GI P+++ N +I GP T +E G F ++ P YP PPKM F +++HPNI
Sbjct: 26 GIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 85
Query: 81 SSQSGAICLDILK-------------DQWSPALTLKTALLSVQALLSAPAPDDPQDAVVA 127
G +C+ IL ++WSP +++ LLSV ++L+ P + + +
Sbjct: 86 YPD-GRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDAS 144
Query: 128 QQYLKDHQTFLSTAR 142
+ + D + F A+
Sbjct: 145 KMWRDDREQFYKIAK 159
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 3/145 (2%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
RV KEL++ K ++ N++ ++ P PY F L I+ P YPF+
Sbjct: 8 RVVKELEDLQKKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFK 66
Query: 66 PPKMHFVTKVWHPNISSQSGAICLDIL-KDQWSPALTLKTALLSVQALLSAPAPDDPQDA 124
PP + F TK++HPN+ ++G ICL I+ + W P L ++ L++ P +P
Sbjct: 67 PPMIKFTTKIYHPNV-DENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRM 125
Query: 125 VVAQQYLKDHQTFLSTARYWTESFA 149
+A ++ + F A +T F
Sbjct: 126 DLADLLTQNPELFRKNAEEFTLRFG 150
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 3/145 (2%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
RV KEL++ K ++ N++ ++ P PY F L I+ P YPF+
Sbjct: 5 RVVKELEDLQKKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFK 63
Query: 66 PPKMHFVTKVWHPNISSQSGAICLDIL-KDQWSPALTLKTALLSVQALLSAPAPDDPQDA 124
PP + F TK++HPN+ ++G ICL I+ + W P L ++ L++ P +P
Sbjct: 64 PPMIKFTTKIYHPNV-DENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRM 122
Query: 125 VVAQQYLKDHQTFLSTARYWTESFA 149
+A ++ + F A +T F
Sbjct: 123 DLADLLTQNPELFRKNAEEFTLRFG 147
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 19/119 (15%)
Query: 6 RVQKELQE--------CSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDIT 57
R+QKEL C+ D+ S I++ +V G+ T Y +++ I
Sbjct: 24 RIQKELNNFLKNPPINCTIDVHPSNIRIW-----IVQYVGL----ENTIYANEVYKIKII 74
Query: 58 LPDGYPFEPPKMHFVTKV-WHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSA 115
PD YP +PP ++F+ K H ++ S +G ICL +L D ++P+L++ +LS+ ++LS+
Sbjct: 75 FPDNYPLKPPIVYFLQKPPKHTHVYS-NGDICLSVLGDDYNPSLSISGLILSIISMLSS 132
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 6/113 (5%)
Query: 6 RVQKELQECSKDIEASGIKVT--PVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
R+QKEL D G+ + V +++ + G GT YEG F+L YP
Sbjct: 26 RLQKELLALQND-PPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYP 84
Query: 64 FEPPKMHFVTKVW--HPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLS 114
F+ P++ F + HP++ S +G ICL IL + WSPAL++++ LS+ ++LS
Sbjct: 85 FDSPQVMFTGENIPVHPHVYS-NGHICLSILTEDWSPALSVQSVCLSIISMLS 136
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 17/118 (14%)
Query: 6 RVQKELQE--------CSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDIT 57
R+QKEL C+ D+ + I++ +V G+ T Y ++L I
Sbjct: 10 RIQKELHNFLNNPPINCTLDVHPNNIRIW-----IVKYVGL----ENTIYANEVYKLKII 60
Query: 58 LPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSA 115
PD YP +PP ++F+ K +G ICL +L D ++P+L++ +LS+ ++LS+
Sbjct: 61 FPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLSS 118
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
R++++ KD I P+ N++ ++ GP TPYEGG + + P +PF+
Sbjct: 18 RLKQDYLRIKKD-PVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFK 76
Query: 66 PPKMHFVTKVWHPNISSQSGA-ICL---DILKDQWSPALTLKTALLSVQALLSAPAP 118
PP ++ +T PN + +CL D D W+PA ++ T L + + + P
Sbjct: 77 PPSIYMIT----PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 129
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 14/94 (14%)
Query: 38 IIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWH-----PNISSQSGAICLDIL 92
+I GP TPY G F D+ P YP PP ++ T H PN+ + G +CL IL
Sbjct: 115 LITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYN-DGKVCLSIL 173
Query: 93 -------KDQWSPAL-TLKTALLSVQALLSAPAP 118
+++W+P + L+SVQ+L+ P
Sbjct: 174 NTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEP 207
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 49 GGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSP 98
G T++L + D YP EPP + FVT V+ P ++ + G IC ++ D W+P
Sbjct: 68 GNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGE-GGICDRMVNDFWTP 116
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 32 LVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDI 91
+ G I GP + +E + L I YP PPK+ F++K+ P ++ +G + D
Sbjct: 38 MTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDF 97
Query: 92 --LKDQWSPALTLKTALLSVQALLSAPA 117
L+D W A T++T LL ++ ++ PA
Sbjct: 98 HTLRD-WKRAYTMETLLLDLRKEMATPA 124
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 32 LVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDI 91
+ G I GP + +E + L I YP PPK+ F++K+ P ++ +G + D
Sbjct: 39 MTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDF 98
Query: 92 --LKDQWSPALTLKTALLSVQALLSAPA 117
L+D W A T++T LL ++ ++ PA
Sbjct: 99 HTLRD-WKRAYTMETLLLDLRKEMATPA 125
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSDN----LVHLTGIIPGPVGTPYEGGTFRLDITLPDG 61
R+ +EL+E K + G + D+ L TG+I GP T YE + L +
Sbjct: 8 RLLEELEEGQKGV-GDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPK 66
Query: 62 YPFEPPKMHFVTKVWHPNISSQSGAI---CLDILKDQWSPALTLKTALLSVQALL 113
YP PP + FVTK+ I++ SG + + +L +W + ++K L ++ L+
Sbjct: 67 YPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQELRRLM 120
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSDN----LVHLTGIIPGPVGTPYEGGTFRLDITLPDG 61
R+ +EL+E K + G + D+ L TG+I GP T YE + L +
Sbjct: 14 RLLEELEEGQKGV-GDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPK 72
Query: 62 YPFEPPKMHFVTKVWHPNISSQSGAI---CLDILKDQWSPALTLKTALLSVQALL 113
YP PP + FVTK+ I++ SG + + +L +W + ++K L ++ L+
Sbjct: 73 YPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQELRRLM 126
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSDN----LVHLTGIIPGPVGTPYEGGTFRLDITLPDG 61
R+ +EL+E K + G + D+ L TG+I GP T YE + L +
Sbjct: 9 RLLEELEEGQKGV-GDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPK 67
Query: 62 YPFEPPKMHFVTKVWHPNISSQSGAI---CLDILKDQWSPALTLKTALLSVQALL 113
YP PP + FVTK+ I++ SG + + +L +W + ++K L ++ L+
Sbjct: 68 YPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQELRRLM 121
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSD---NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGY 62
R+ +EL+E K + + D L TG+I GP T YE + L + Y
Sbjct: 19 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 78
Query: 63 PFEPPKMHFVTKVWHPNISSQSGAI---CLDILKDQWSPALTLKTALLSVQALL 113
P PP + FVTK+ I++ SG + + +L +W + ++K L ++ L+
Sbjct: 79 PEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQELRRLM 131
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSDN----LVHLTGIIPGPVGTPYEGGTFRLDITLPDG 61
R+ +EL+E K + G + D+ L TG+I GP T YE + L I
Sbjct: 39 RLLEELEEGQKGV-GDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPK 97
Query: 62 YPFEPPKMHFVTKVWHPNISSQSGAI---CLDILKDQWSPALTLKTALLSVQALL 113
YP PP + FVTK+ ++S +G + + +L +W + ++K L ++ L+
Sbjct: 98 YPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLM 151
>pdb|2QGX|A Chain A, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|B Chain B, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|C Chain C, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|D Chain D, Ubiquitin-Conjugating Enzyme E2q
Length = 169
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 48 EGGTF-RLDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQ-WSPALTLKTA 105
EG F L+ + D +PF+PP + V+ V GAIC+++L Q WS A ++++
Sbjct: 65 EGADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESV 124
Query: 106 LLSVQALL 113
++ + A L
Sbjct: 125 IMQISATL 132
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSD---NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGY 62
R+ +EL+E K + + D L TG+I GP T YE + L I Y
Sbjct: 11 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMILGPPRTIYENRIYSLKIECGPKY 70
Query: 63 PFEPPKMHFVTKVWHPNISSQSGAI---CLDILKDQWSPALTLKTALLSVQALL 113
P PP + FVTK+ ++S +G + + +L +W + ++K L ++ L+
Sbjct: 71 PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLM 123
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSD---NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGY 62
R+ +EL+E K + + D L TG+I GP T YE + L I Y
Sbjct: 29 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKY 88
Query: 63 PFEPPKMHFVTKVWHPNISSQSGAI---CLDILKDQWSPALTLKTALLSVQALL 113
P PP + FVTK+ ++S +G + + +L +W + ++K L ++ L+
Sbjct: 89 PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLM 141
>pdb|1ZUO|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
pdb|1ZUO|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
Length = 186
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 54 LDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQ-WSPALTLKTALLSVQAL 112
L+ + D +PF+PP + V V GA+C+++L Q WS A ++++ ++ + A
Sbjct: 93 LNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINAT 152
Query: 113 L 113
L
Sbjct: 153 L 153
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 6 RVQKELQECSKDIEASGIKVTPVSDNLVHLTG---IIPGPVGTPYEGGTFRLDITLPDGY 62
R+ EL+ K + G+ S + + L+ I G GT +E + L I D Y
Sbjct: 29 RLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNY 88
Query: 63 PFEPPKMHFVTKVWHPNISSQSGAI--CLDILKDQWSPALTLKTALLSV-QALLSAPAPD 119
P PP + F TK+ + + I L ILK+ W+ T++T L+S+ Q +LS+
Sbjct: 89 PDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKN-WNRNYTIETILISLRQEMLSSANKR 147
Query: 120 DPQ 122
PQ
Sbjct: 148 LPQ 150
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 32 LVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAI--CL 89
L + + I G GT +E + L I D YP PP + F TK+ + + I L
Sbjct: 54 LSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNL 113
Query: 90 DILKDQWSPALTLKTALLSV-QALLSAPAPDDPQ 122
ILK+ W+ T++T L+S+ Q +LS+ PQ
Sbjct: 114 HILKN-WNRNYTIETILISLRQEMLSSANKRLPQ 146
>pdb|1VG5|A Chain A, Solution Structure Of Rsgi Ruh-014, A Uba Domain From
Arabidopsis Cdna
Length = 73
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 157 EEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLS 193
EE++QKLV MGF +QV L D +A+E L+S
Sbjct: 30 EEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMS 66
>pdb|2F0R|A Chain A, Crystallographic Structure Of Human Tsg101 Uev Domain
pdb|2F0R|B Chain B, Crystallographic Structure Of Human Tsg101 Uev Domain
Length = 159
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 29 SDNLVHLTGIIPGPVGTPYEGGTFRLDIT--LPDGYPFEPP 67
S L++LTG IP PY G T+ + I L D YP+ PP
Sbjct: 63 SRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPP 99
>pdb|1KPP|A Chain A, Structure Of The Tsg101 Uev Domain
pdb|1KPQ|A Chain A, Structure Of The Tsg101 Uev Domain
pdb|1M4P|A Chain A, Structure Of The Tsg101 Uev Domain In Complex With A
Hiv-1 Ptap "late Domain" Peptide, Dyana Ensemble
pdb|1M4Q|A Chain A, Structure Of The Tsg101 Uev Domain In Complex With A
Hiv-1 Ptap "late Domain" Peptide, Cns Ensemble
Length = 145
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 29 SDNLVHLTGIIPGPVGTPYEGGTFRLDIT--LPDGYPFEPP 67
S L++LTG IP PY G T+ + I L D YP+ PP
Sbjct: 49 SRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPP 85
>pdb|3P9G|A Chain A, Crystal Structure Of The Tsg101 Uev Domain In Complex
With Fa459 Peptide
pdb|3P9H|A Chain A, Crystal Structure Of The Tsg101 Uev Domain In Complex
With Fa258 Peptide
Length = 145
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 29 SDNLVHLTGIIPGPVGTPYEGGTFRLDIT--LPDGYPFEPP 67
S L++LTG IP PY G T+ + I L D YP+ PP
Sbjct: 49 SRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPP 85
>pdb|3OBQ|A Chain A, Crystal Structure Of The Tsg101 Uev Domain In Complex
With A Human Hrs Psap Peptide
pdb|3OBS|A Chain A, Crystal Structure Of Tsg101 Uev Domain
pdb|3OBU|A Chain A, Crystal Structure Of The Tsg101 Uev Domain In Complex
With A Hiv-1 Ptap Peptide
pdb|3OBX|A Chain A, Crystal Structure Of The Tsg101 Uev Domain In Complex
With A Hiv-1 Gag P7a Mutant Peptide
Length = 146
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 29 SDNLVHLTGIIPGPVGTPYEGGTFRLDIT--LPDGYPFEPP 67
S L++LTG IP PY G T+ + I L D YP+ PP
Sbjct: 50 SRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPP 86
>pdb|1S1Q|A Chain A, Tsg101(Uev) Domain In Complex With Ubiquitin
pdb|1S1Q|C Chain C, Tsg101(Uev) Domain In Complex With Ubiquitin
Length = 145
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 29 SDNLVHLTGIIPGPVGTPYEGGTFRLDIT--LPDGYPFEPP 67
S L +LTG IP PY G T+ + I L D YP+ PP
Sbjct: 49 SRELXNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPP 85
>pdb|1AYE|A Chain A, Human Procarboxypeptidase A2
Length = 401
Score = 30.0 bits (66), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 52 FRLDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDI 91
F L +T PDGY F K ++W S SG++C+ +
Sbjct: 198 FLLPVTNPDGYVFSQTK----NRMWRKTRSKVSGSLCVGV 233
>pdb|1EN5|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
Length = 205
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 129 QYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQKLVEMGFPESQVRSTLEIVGGDENMAL 188
+ K HQTF++ A ES + ++L VEE + KL ++ P + GG N +L
Sbjct: 26 HHTKHHQTFVNNANAALESLPEFANLPVEELITKLDQL--PADKKTVLRNNAGGHANHSL 83
>pdb|1I0H|A Chain A, Crystal Structure Of The E. Coli Manganese Superoxide
Dismutase Mutant Y174f At 1.35 Angstroms Resolution.
pdb|1I0H|B Chain B, Crystal Structure Of The E. Coli Manganese Superoxide
Dismutase Mutant Y174f At 1.35 Angstroms Resolution.
pdb|1IX9|A Chain A, Crystal Structure Of The E. Coli Manganase(Iii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1IX9|B Chain B, Crystal Structure Of The E. Coli Manganase(Iii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1IXB|A Chain A, Crystal Structure Of The E. Coli Manganese(Ii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1IXB|B Chain B, Crystal Structure Of The E. Coli Manganese(Ii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1ZLZ|A Chain A, Re-Evaluation Of The Low-Temperature Azide In Mn-Dependent
Superoxide Dismutase
pdb|1ZLZ|B Chain B, Re-Evaluation Of The Low-Temperature Azide In Mn-Dependent
Superoxide Dismutase
Length = 205
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 129 QYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQKLVEMGFPESQVRSTLEIVGGDENMAL 188
+ K HQT+++ A ES + ++L VEE + KL ++ P + GG N +L
Sbjct: 26 HHTKHHQTYVNNANAALESLPEFANLPVEELITKLDQL--PADKKTVLRNNAGGHANHSL 83
>pdb|1EN6|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
Length = 205
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 129 QYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQKLVEMGFPESQVRSTLEIVGGDENMAL 188
+ K HQT+++ A ES + ++L VEE + KL ++ P + GG N +L
Sbjct: 26 HHTKHHQTYVNNANAALESLPEFANLPVEELITKLDQL--PADKKTVLRNNAGGHANHSL 83
>pdb|1EN4|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
Length = 205
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 129 QYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQKLVEMGFPESQVRSTLEIVGGDENMAL 188
+ K HQT+++ A ES + ++L VEE + KL ++ P + GG N +L
Sbjct: 26 HHTKHHQTYVNNANAALESLPEFANLPVEELITKLDQL--PADKKTVLRNNAGGHANHSL 83
>pdb|2R1F|A Chain A, Crystal Structure Of Predicted Aminodeoxychorismate Lyase
From Escherichia Coli
pdb|2R1F|B Chain B, Crystal Structure Of Predicted Aminodeoxychorismate Lyase
From Escherichia Coli
Length = 270
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 13/77 (16%)
Query: 26 TPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVT-----KVWHPNI 80
TP + N +TG+ PG + TP D +P + P ++FV ++ N+
Sbjct: 197 TPTAYNTYTITGLPPGAIATP------GADSLKAAAHPAKTPYLYFVADGKGGHTFNTNL 250
Query: 81 SSQSGAI--CLDILKDQ 95
+S + ++ L +LK++
Sbjct: 251 ASHNKSVQDYLKVLKEK 267
>pdb|1VEW|A Chain A, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|B Chain B, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|C Chain C, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|D Chain D, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1MMM|A Chain A, Distinct Metal Environment In Iron-Substituted Manganese
Superoxide Dismutase Provides A Structural Basis Of
Metal Specificity
pdb|1MMM|B Chain B, Distinct Metal Environment In Iron-Substituted Manganese
Superoxide Dismutase Provides A Structural Basis Of
Metal Specificity
pdb|1D5N|A Chain A, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|B Chain B, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|C Chain C, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|D Chain D, Crystal Structure Of E. Coli Mnsod At 100k
pdb|3K9S|A Chain A, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3K9S|B Chain B, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3K9S|C Chain C, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3K9S|D Chain D, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3OT7|A Chain A, Escherichia Coli Apo-Manganese Superoxide Dismutase
pdb|3OT7|B Chain B, Escherichia Coli Apo-Manganese Superoxide Dismutase
pdb|3OT7|C Chain C, Escherichia Coli Apo-Manganese Superoxide Dismutase
pdb|3OT7|D Chain D, Escherichia Coli Apo-Manganese Superoxide Dismutase
Length = 205
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 129 QYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQKLVEMGFPESQVRSTLEIVGGDENMAL 188
+ K HQT+++ A ES + ++L VEE + KL ++ P + GG N +L
Sbjct: 26 HHTKHHQTYVNNANAALESLPEFANLPVEELITKLDQL--PADKKTVLRNNAGGHANHSL 83
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 45 TPYEGGTFRLDITLPDGYP 63
TP EG F+LD LP+ YP
Sbjct: 111 TPIEGRPFQLDCVLPNAYP 129
>pdb|1DV0|A Chain A, Refined Nmr Solution Structure Of The C-Terminal Uba
Domain Of The Human Homologue Of Rad23a (Hhr23a)
Length = 47
Score = 27.3 bits (59), Expect = 5.0, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 157 EEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLS 193
+E +++L +GFPES V +EN+A LLS
Sbjct: 5 KEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS 41
>pdb|1I08|A Chain A, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|B Chain B, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|C Chain C, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|D Chain D, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
Length = 205
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 129 QYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQKLVEMGFPESQVRSTLEIVGGDENMAL 188
+ K HQT+++ A ES + ++L VEE + KL ++ P + GG N +L
Sbjct: 26 HHTKAHQTYVNNANAALESLPEFANLPVEELITKLDQL--PADKKTVLRNNAGGHANHSL 83
>pdb|2KNZ|A Chain A, Nmr Structure Of Cip75 Uba Domain
Length = 53
Score = 26.6 bits (57), Expect = 8.5, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 157 EEKVQKLVEMGFPESQVR-STLEIVGGDENMALEKLLSS 194
++++++L MGF + L GGD N A+E+LL S
Sbjct: 12 QQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGS 50
>pdb|2JY5|A Chain A, Nmr Structure Of Ubiquilin 1 Uba Domain
pdb|2JY6|B Chain B, Solution Structure Of The Complex Of Ubiquitin And
Ubiquilin 1 Uba Domain
Length = 52
Score = 26.6 bits (57), Expect = 8.7, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 157 EEKVQKLVEMGFPESQVR-STLEIVGGDENMALEKLLSS 194
++++++L MGF + L GGD N A+E+LL S
Sbjct: 13 QQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGS 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,994,858
Number of Sequences: 62578
Number of extensions: 250304
Number of successful extensions: 782
Number of sequences better than 100.0: 141
Number of HSP's better than 100.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 553
Number of HSP's gapped (non-prelim): 141
length of query: 194
length of database: 14,973,337
effective HSP length: 94
effective length of query: 100
effective length of database: 9,091,005
effective search space: 909100500
effective search space used: 909100500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)