Query 029412
Match_columns 194
No_of_seqs 176 out of 1557
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 20:33:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029412.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029412hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k9o_A Ubiquitin-conjugating e 100.0 2.1E-61 7.2E-66 384.2 23.0 191 3-193 6-200 (201)
2 2pwq_A Ubiquitin conjugating e 100.0 1.5E-60 5.2E-65 381.9 16.4 192 2-194 23-215 (216)
3 3e46_A Ubiquitin-conjugating e 100.0 1.8E-59 6.3E-64 383.2 23.0 192 3-194 58-253 (253)
4 1tte_A Ubiquitin-conjugating e 100.0 2.4E-56 8.3E-61 357.3 18.0 182 2-184 2-197 (215)
5 4gpr_A Ubiquitin-conjugating e 100.0 2.9E-51 9.9E-56 312.4 18.0 148 2-151 4-151 (151)
6 1yh2_A HSPC150 protein similar 100.0 5.9E-51 2E-55 315.9 18.2 161 1-163 3-168 (169)
7 1fxt_A Ubiquitin-conjugating e 100.0 2.2E-51 7.7E-56 312.4 15.1 148 2-150 1-149 (149)
8 1ayz_A UBC2, ubiquitin-conjuga 100.0 4.8E-51 1.6E-55 316.2 17.1 153 1-155 1-155 (169)
9 2c2v_B Ubiquitin-conjugating e 100.0 4.2E-51 1.4E-55 312.4 16.4 148 3-152 6-153 (154)
10 2bep_A Ubiquitin-conjugating e 100.0 1.2E-50 4.1E-55 311.4 17.8 149 3-151 9-159 (159)
11 2ayv_A Ubiquitin-conjugating e 100.0 2.6E-50 8.9E-55 311.2 18.8 146 2-149 21-166 (166)
12 2aak_A UBC1, ubiquitin conjuga 100.0 2.8E-50 9.5E-55 307.3 18.7 149 1-151 1-151 (152)
13 1z2u_A Ubiquitin-conjugating e 100.0 2.2E-50 7.5E-55 307.2 17.9 147 2-150 4-150 (150)
14 2r0j_A Ubiquitin carrier prote 100.0 1.6E-50 5.4E-55 307.7 16.8 147 3-151 2-148 (149)
15 1zdn_A Ubiquitin-conjugating e 100.0 2.2E-50 7.6E-55 309.6 16.4 145 3-149 14-158 (158)
16 2c4o_A Ubiquitin-conjugating e 100.0 5.2E-50 1.8E-54 309.4 18.3 147 2-150 19-165 (165)
17 1jat_A Ubiquitin-conjugating e 100.0 2.4E-50 8.2E-55 308.5 15.1 149 2-152 5-153 (155)
18 2f4z_A Tgtwinscan_2721 - E2 do 100.0 7.3E-50 2.5E-54 315.1 17.8 150 2-151 32-193 (193)
19 3h8k_A Ubiquitin-conjugating e 100.0 3.5E-49 1.2E-53 304.7 18.4 147 2-150 3-163 (164)
20 2e2c_A Ubiquitin conjugating e 100.0 3.2E-49 1.1E-53 302.6 17.9 147 2-151 9-155 (156)
21 3rcz_B SUMO-conjugating enzyme 100.0 2.8E-49 9.5E-54 304.7 17.5 147 2-150 10-163 (163)
22 2gjd_A Ubiquitin-conjugating e 100.0 4.3E-49 1.5E-53 302.2 17.7 146 3-150 5-157 (157)
23 2ucz_A UBC7, ubiquitin conjuga 100.0 4E-49 1.4E-53 304.7 17.6 146 3-150 5-164 (165)
24 1wzv_A Ubiquitin-conjugating e 100.0 3.2E-49 1.1E-53 302.3 16.7 149 1-152 3-153 (155)
25 3bzh_A Ubiquitin-conjugating e 100.0 5.9E-49 2E-53 310.3 18.5 146 3-150 49-194 (194)
26 2grr_A Ubiquitin-conjugating e 100.0 1.5E-48 5.1E-53 300.3 16.9 147 3-151 8-161 (161)
27 2onu_A Ubiquitin-conjugating e 100.0 7.3E-49 2.5E-53 299.3 11.6 147 2-152 2-149 (152)
28 1i7k_A Ubiquitin-conjugating e 100.0 3.4E-48 1.2E-52 302.4 15.5 147 2-151 30-176 (179)
29 3fn1_B NEDD8-conjugating enzym 100.0 1.6E-47 5.4E-52 296.2 17.2 145 3-150 15-167 (167)
30 2y9m_A Ubiquitin-conjugating e 100.0 3.1E-47 1.1E-51 295.8 17.1 148 3-150 7-168 (172)
31 1yrv_A Ubiquitin-conjugating l 100.0 1.8E-47 6E-52 296.1 15.0 143 3-147 24-168 (169)
32 1c4z_D UBCH7, ubiquitin conjug 100.0 2.5E-48 8.7E-53 297.0 10.1 149 1-152 1-151 (154)
33 3rz3_A Ubiquitin-conjugating e 100.0 1.1E-46 3.7E-51 295.4 16.7 147 2-150 7-173 (183)
34 2z5d_A Ubiquitin-conjugating e 100.0 1.8E-47 6E-52 298.1 12.1 145 3-152 26-171 (179)
35 2awf_A Ubiquitin-conjugating e 100.0 7.5E-47 2.6E-51 293.5 14.5 141 2-144 17-172 (172)
36 1yf9_A Ubiquitin carrier prote 100.0 5.9E-47 2E-51 293.7 13.4 146 1-151 11-157 (171)
37 4ddg_A Ubiquitin-conjugating e 100.0 5.4E-46 1.8E-50 322.5 18.8 157 2-160 3-159 (399)
38 1y8x_A Ubiquitin-conjugating e 100.0 6E-46 2E-50 285.4 15.7 142 2-148 6-148 (160)
39 2nvu_C NEDD8-conjugating enzym 100.0 1.9E-45 6.6E-50 287.3 15.6 143 2-149 26-169 (180)
40 3o2u_A NEDD8-conjugating enzym 100.0 6.5E-45 2.2E-49 286.6 14.0 144 2-150 29-179 (190)
41 4ds2_A Ubiquitin-conjugating e 100.0 6.4E-43 2.2E-47 270.3 13.1 140 2-142 8-163 (167)
42 3ceg_A Baculoviral IAP repeat- 100.0 2.5E-42 8.7E-47 289.5 10.2 149 2-151 76-244 (323)
43 2q0v_A Ubiquitin-conjugating e 100.0 4.2E-42 1.4E-46 262.7 10.1 131 1-133 20-156 (156)
44 1jat_B Ubiquitin-conjugating e 100.0 7E-42 2.4E-46 256.8 7.0 128 2-130 6-138 (138)
45 2fo3_A Ubiquitin-conjugating e 100.0 1.3E-40 4.5E-45 246.0 13.2 116 3-120 7-123 (125)
46 2a4d_A Ubiquitin-conjugating e 100.0 5.4E-41 1.8E-45 257.2 11.5 125 2-127 25-156 (160)
47 2h2y_A Ubiquitin-conjugating e 100.0 9.5E-40 3.3E-44 244.6 14.7 115 2-118 20-135 (136)
48 2hlw_A Ubiquitin-conjugating e 100.0 3.6E-40 1.2E-44 255.1 9.0 125 2-127 35-166 (170)
49 2a7l_A Hypothetical ubiquitin- 100.0 1.1E-38 3.7E-43 238.6 11.6 109 4-114 24-136 (136)
50 2f4w_A Ubiquitin-conjugating e 100.0 9.7E-37 3.3E-41 239.4 14.9 116 2-121 14-132 (187)
51 1zuo_A Hypothetical protein LO 100.0 1.1E-37 3.8E-42 244.5 4.6 138 2-148 27-180 (186)
52 2z6o_A UFM1-conjugating enzyme 99.9 3.6E-27 1.2E-31 178.6 2.3 113 4-132 34-161 (172)
53 3r3q_A Suppressor protein STP2 99.8 2.2E-19 7.4E-24 137.0 9.7 113 4-120 30-161 (162)
54 3kpa_A Probable ubiquitin fold 99.7 1.4E-18 4.9E-23 128.7 0.6 86 4-100 36-132 (168)
55 3obq_A Tumor susceptibility ge 99.5 3.8E-14 1.3E-18 106.3 6.4 101 6-115 24-138 (146)
56 2cwb_A Chimera of immunoglobul 99.4 6E-13 2E-17 94.4 5.2 79 116-194 21-105 (108)
57 1ify_A HHR23A, UV excision rep 98.7 2E-08 6.7E-13 61.4 4.6 39 156-194 8-46 (49)
58 2g3q_A Protein YBL047C; endocy 98.7 2.9E-08 9.9E-13 58.9 4.9 39 156-194 4-42 (43)
59 2bwb_A Ubiquitin-like protein 98.6 9.4E-08 3.2E-12 57.5 5.3 38 157-194 8-46 (46)
60 1vg5_A RSGI RUH-014, rhomboid 98.5 1E-07 3.4E-12 62.9 5.1 39 156-194 29-67 (73)
61 2jy5_A Ubiquilin-1; UBA, alter 98.5 2E-07 6.8E-12 57.6 6.0 39 156-194 12-51 (52)
62 2cpw_A CBL-interacting protein 98.5 1.7E-08 5.7E-13 65.2 0.8 50 142-194 8-58 (64)
63 2knz_A Ubiquilin-4; cytoplasm, 98.5 1.7E-07 5.9E-12 58.1 4.9 38 157-194 12-50 (53)
64 1wr1_B Ubiquitin-like protein 98.4 3.2E-07 1.1E-11 57.9 4.8 38 157-194 18-56 (58)
65 1veg_A NEDD8 ultimate buster-1 98.4 3E-07 1E-11 62.0 4.6 38 156-193 29-66 (83)
66 1wji_A Tudor domain containing 98.4 2.8E-07 9.7E-12 59.1 4.1 40 155-194 8-47 (63)
67 1vej_A Riken cDNA 4931431F19; 98.3 6.7E-07 2.3E-11 59.0 5.1 38 157-194 30-68 (74)
68 1wiv_A UBP14, ubiquitin-specif 98.3 5.7E-07 2E-11 59.4 4.7 40 155-194 28-67 (73)
69 2dak_A Ubiquitin carboxyl-term 98.3 5.6E-07 1.9E-11 57.8 4.4 39 155-193 8-46 (63)
70 1z96_A DNA-damage, UBA-domain 98.3 9.5E-07 3.3E-11 51.2 5.0 36 157-192 5-40 (40)
71 2dah_A Ubiquilin-3; UBA domain 98.3 1.1E-06 3.6E-11 54.7 4.9 39 155-193 8-47 (54)
72 1dv0_A DNA repair protein HHR2 98.3 4.1E-07 1.4E-11 54.9 2.5 39 156-194 4-42 (47)
73 1wj7_A Hypothetical protein (R 98.2 1.8E-06 6.3E-11 60.3 5.1 39 156-194 39-78 (104)
74 2ekk_A UBA domain from E3 ubiq 98.2 3.1E-06 1.1E-10 51.0 4.9 38 155-193 8-45 (47)
75 1whc_A RSGI RUH-027, UBA/UBX 3 98.1 2E-06 6.7E-11 55.3 3.9 39 155-193 8-47 (64)
76 2dai_A Ubadc1, ubiquitin assoc 98.1 3.5E-06 1.2E-10 56.9 4.5 39 156-194 29-67 (83)
77 2dkl_A Trinucleotide repeat co 98.1 4.9E-06 1.7E-10 56.4 5.2 37 157-193 22-58 (85)
78 2dag_A Ubiquitin carboxyl-term 98.1 3.7E-06 1.3E-10 55.6 4.0 39 155-193 8-47 (74)
79 2crn_A Ubash3A protein; compac 98.0 3.6E-06 1.2E-10 54.1 3.4 39 155-193 8-47 (64)
80 1wgn_A UBAP1, ubiquitin associ 97.9 1E-05 3.6E-10 50.8 4.0 37 157-193 20-56 (63)
81 2ooa_A E3 ubiquitin-protein li 97.9 2E-05 6.9E-10 47.8 4.9 38 155-192 10-47 (52)
82 1vek_A UBP14, ubiquitin-specif 97.9 1.1E-05 3.8E-10 54.6 4.1 38 156-193 29-67 (84)
83 2qsf_X RAD23, UV excision repa 97.8 2.7E-05 9.1E-10 59.4 5.3 73 122-194 59-168 (171)
84 2d9s_A CBL E3 ubiquitin protei 97.8 5.5E-05 1.9E-09 46.1 5.5 38 155-192 8-45 (53)
85 2dna_A Unnamed protein product 97.7 5.9E-05 2E-09 48.6 4.7 38 157-194 20-58 (67)
86 2lbc_A Ubiquitin carboxyl-term 97.7 5.2E-05 1.8E-09 55.0 4.9 40 155-194 77-116 (126)
87 4ae4_A Ubiquitin-associated pr 97.6 0.00013 4.5E-09 52.4 6.6 38 157-194 77-114 (118)
88 2juj_A E3 ubiquitin-protein li 97.5 0.0001 3.5E-09 45.0 4.2 38 155-192 6-43 (56)
89 1oqy_A HHR23A, UV excision rep 97.4 9.1E-05 3.1E-09 63.1 4.0 40 155-194 167-206 (368)
90 2cp8_A NEXT to BRCA1 gene 1 pr 97.3 0.00027 9.3E-09 43.4 4.3 37 157-193 10-47 (54)
91 1oqy_A HHR23A, UV excision rep 97.3 8.2E-05 2.8E-09 63.4 2.4 72 122-193 270-362 (368)
92 2oo9_A E3 ubiquitin-protein li 97.3 0.00052 1.8E-08 40.3 4.7 36 157-192 5-40 (46)
93 4ae4_A Ubiquitin-associated pr 96.5 0.003 1E-07 45.2 4.8 37 157-193 9-45 (118)
94 2ebm_A RWD domain-containing p 96.4 0.012 4.2E-07 42.1 7.4 68 3-73 11-78 (128)
95 2cos_A Serine/threonine protei 94.8 0.035 1.2E-06 33.8 3.7 35 158-192 11-46 (54)
96 2day_A Ring finger protein 25; 94.7 0.18 6.2E-06 35.8 8.2 68 6-74 12-83 (128)
97 2ebk_A RWD domain-containing p 94.7 0.39 1.3E-05 34.1 9.9 67 6-73 11-79 (128)
98 2yz0_A Serine/threonine-protei 94.6 0.12 4.3E-06 37.2 7.2 66 5-73 13-85 (138)
99 3zqs_A E3 ubiquitin-protein li 93.8 0.52 1.8E-05 36.1 9.5 84 5-114 4-87 (186)
100 2cp9_A EF-TS, EF-TSMT, elongat 93.5 0.16 5.5E-06 32.1 5.1 37 156-192 9-46 (64)
101 1ukx_A GCN2, GCN2 EIF2alpha ki 93.5 0.46 1.6E-05 34.0 8.4 70 3-73 11-86 (137)
102 3e21_A HFAF1, FAS-associated f 92.8 0.15 5E-06 30.0 3.8 36 156-191 5-42 (45)
103 1v92_A NSFL1 cofactor P47; 3-h 92.1 0.28 9.6E-06 28.4 4.5 37 157-193 6-43 (46)
104 2daw_A RWD domain containing p 91.7 0.73 2.5E-05 33.9 7.6 23 51-73 76-98 (154)
105 1wgl_A TOLL-interacting protei 90.1 0.59 2E-05 28.9 4.7 39 155-193 8-48 (59)
106 2dal_A Protein KIAA0794; FAS a 89.9 0.59 2E-05 29.1 4.7 37 156-192 15-52 (62)
107 2dam_A ETEA protein; KIAA0887, 89.1 0.74 2.5E-05 29.2 4.8 36 157-192 19-56 (67)
108 2dax_A Protein C21ORF6; RWD do 88.4 0.23 7.9E-06 36.5 2.3 23 51-73 74-96 (152)
109 2dzl_A Protein FAM100B; UBA-li 86.6 1.4 4.9E-05 27.7 4.9 36 158-193 19-55 (66)
110 3ihp_A Ubiquitin carboxyl-term 85.1 1.9 6.6E-05 40.4 7.1 39 155-193 719-757 (854)
111 2qho_B E3 ubiquitin-protein li 83.3 3.5 0.00012 24.3 5.1 38 156-193 9-48 (53)
112 2dhy_A CUE domain-containing p 83.1 3.1 0.00011 26.3 5.3 38 156-193 18-57 (67)
113 1tr8_A Conserved protein (MTH1 82.1 2 6.8E-05 29.5 4.5 37 155-191 64-101 (102)
114 1otr_A Protein CUE2; protein-p 81.5 2.7 9.3E-05 24.9 4.3 37 157-193 5-43 (49)
115 4dbg_B Ring finger protein 31; 77.2 9.5 0.00033 28.3 7.0 35 157-191 103-138 (162)
116 1q02_A Sequestosome 1; helical 69.6 6.7 0.00023 23.4 3.7 36 157-192 11-48 (52)
117 3u3c_B Paxillin LD2 peptide; 4 66.1 3.4 0.00012 20.4 1.6 21 2-23 5-25 (26)
118 2l2d_A OTU domain-containing p 58.3 26 0.00089 21.8 5.0 37 156-192 17-57 (73)
119 1oai_A Nuclear RNA export fact 55.6 26 0.00089 21.3 4.8 33 158-190 9-42 (59)
120 2jp7_A MRNA export factor MEX6 52.2 23 0.00077 21.5 4.0 33 158-190 8-41 (57)
121 1ixs_A Holliday junction DNA h 45.0 51 0.0017 20.1 5.1 24 157-180 18-41 (62)
122 3k6g_A Telomeric repeat-bindin 43.9 44 0.0015 22.8 4.8 35 160-194 17-52 (111)
123 3rls_A YAF9, protein AF-9 homo 36.1 63 0.0022 24.2 5.1 46 29-76 29-74 (175)
124 3ihp_A Ubiquitin carboxyl-term 33.4 39 0.0013 31.5 4.3 37 156-192 652-689 (854)
125 1cuk_A RUVA protein; DNA repai 31.1 26 0.00091 26.7 2.4 25 157-181 161-185 (203)
126 3dfg_A Xcrecx, regulatory prot 30.0 1.5E+02 0.0053 21.2 6.9 48 141-189 70-117 (162)
127 1p3q_Q VPS9P, vacuolar protein 29.3 31 0.0011 20.7 1.9 37 157-193 13-51 (54)
128 2ejs_A Autocrine motility fact 29.0 99 0.0034 18.7 5.1 38 156-194 13-52 (58)
129 2di0_A Activating signal coint 27.7 1.2E+02 0.004 19.2 5.0 38 157-194 14-53 (71)
130 3b71_D T-cell surface glycopro 27.7 9.5 0.00033 19.1 -0.5 15 1-15 5-19 (26)
131 2jrw_A Cyclic extended PEP.1; 27.7 30 0.001 16.9 1.3 17 63-79 4-20 (26)
132 3qrl_A Transcription initiatio 23.7 1.3E+02 0.0045 21.6 4.8 43 32-76 32-77 (140)
133 4gew_A 5'-tyrosyl-DNA phosphod 23.5 65 0.0022 26.4 3.6 37 156-192 45-82 (362)
134 3g9r_A Fusion complex of HIV-1 21.7 54 0.0018 18.2 1.8 15 2-16 28-42 (42)
No 1
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=2.1e-61 Score=384.25 Aligned_cols=191 Identities=49% Similarity=0.839 Sum_probs=183.3
Q ss_pred hHHHHHHHHHHHHhcC--CCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccc
Q 029412 3 DFSRVQKELQECSKDI--EASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI 80 (194)
Q Consensus 3 ~~~RL~~E~~~l~~~~--~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 80 (194)
+.+||++|+++|+++. ++.|+++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus 6 a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 85 (201)
T 3k9o_A 6 AVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNI 85 (201)
T ss_dssp THHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTB
T ss_pred HHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcccCCC
Confidence 7899999999999863 25799999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCCCCCch--HH
Q 029412 81 SSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLGV--EE 158 (194)
Q Consensus 81 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~~~~~~--~~ 158 (194)
+..+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+||++||+.....+ ++
T Consensus 86 ~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~~~~~~~~ee 165 (201)
T 3k9o_A 86 SSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTK 165 (201)
T ss_dssp CTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_pred cCCCCeeeCcccccCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcccccccchhHH
Confidence 9669999999999999999999999999999999999999999999999999999999999999999999976543 89
Q ss_pred HHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412 159 KVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLS 193 (194)
Q Consensus 159 ~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~ 193 (194)
+|++|++|||++++|+.||+..+||++.|+|+|++
T Consensus 166 kV~~l~~MGf~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 166 KIENLCAMGFDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 99999999999999999999999999999999986
No 2
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=1.5e-60 Score=381.86 Aligned_cols=192 Identities=51% Similarity=0.889 Sum_probs=145.6
Q ss_pred chHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412 2 IDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS 81 (194)
Q Consensus 2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 81 (194)
.+.+||++|+++|+++ ++.|+++.+.++|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus 23 ~a~~RL~kEl~~l~~~-~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~ 101 (216)
T 2pwq_A 23 KELLRLQKELKDIENE-NVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNIS 101 (216)
T ss_dssp HHHHHHHHHHHHHHHS-CTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred HHHHHHHHHHHHHHhC-CCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCCc
Confidence 3789999999999999 569999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCCCCC-chHHHH
Q 029412 82 SQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSL-GVEEKV 160 (194)
Q Consensus 82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~~~~-~~~~~~ 160 (194)
..+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|++.|.++||+|+++||+.... +.++++
T Consensus 102 ~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~~ya~~~~~~~~~~~v 181 (216)
T 2pwq_A 102 SQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFATGPKEEPREVII 181 (216)
T ss_dssp TTTCBBCCHHHHHHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCCC---------
T ss_pred CCCCEEEchhhcccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCCCcccchhhHH
Confidence 6689999999999999999999999999999999999999999999999999999999999999999998765 358999
Q ss_pred HHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412 161 QKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS 194 (194)
Q Consensus 161 ~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~~ 194 (194)
+++++|||++++++.||++.+|+++.|+|.|++|
T Consensus 182 ~~~~~mgf~~~~~~~al~~~~~~~~~~~~~l~~~ 215 (216)
T 2pwq_A 182 KKITEMGFSEDQAKNALIKANWNETLALNTLLEN 215 (216)
T ss_dssp ----------------------------------
T ss_pred HHHHHcCCCHHHHHHHHHHcCCchHHHHHHHhcC
Confidence 9999999999999999999999999999999986
No 3
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=1.8e-59 Score=383.21 Aligned_cols=192 Identities=48% Similarity=0.827 Sum_probs=183.7
Q ss_pred hHHHHHHHHHHHHhcC--CCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccc
Q 029412 3 DFSRVQKELQECSKDI--EASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI 80 (194)
Q Consensus 3 ~~~RL~~E~~~l~~~~--~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 80 (194)
+.+||++|+++|+++. ++.||++.+.++|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus 58 a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV 137 (253)
T 3e46_A 58 AVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNI 137 (253)
T ss_dssp HHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred HHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCccCCc
Confidence 6899999999999862 25799999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCCCCCch--HH
Q 029412 81 SSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLGV--EE 158 (194)
Q Consensus 81 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~~~~~~--~~ 158 (194)
+..+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|++.|.++|++||++||+.+...+ ++
T Consensus 138 ~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA~~~~~~~~~~~ 217 (253)
T 3e46_A 138 SSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTK 217 (253)
T ss_dssp CTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCCSCCCHHHHH
T ss_pred cCCCCeeecccccCCCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhcccccCcchHHH
Confidence 9668999999999999999999999999999999999999999999999999999999999999999999977654 79
Q ss_pred HHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412 159 KVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS 194 (194)
Q Consensus 159 ~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~~ 194 (194)
+|++|++|||++++|+.||+..+||++.|+|+|++.
T Consensus 218 ~v~~l~~mgf~~~~~~~al~~~nWd~~~A~e~L~~~ 253 (253)
T 3e46_A 218 KIENLCAAGFDRNAVIVALSSKSWDVETATELLLSN 253 (253)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 999999999999999999999999999999999863
No 4
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=2.4e-56 Score=357.30 Aligned_cols=182 Identities=48% Similarity=0.848 Sum_probs=172.0
Q ss_pred chHHHHHHHHHHHHhcCCCCCeEEEecCC-CceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccc
Q 029412 2 IDFSRVQKELQECSKDIEASGIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI 80 (194)
Q Consensus 2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 80 (194)
++.+||++|+++|+++ ++.|+++.+.++ ++++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus 2 ~a~~RL~kEl~~l~~~-~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI 80 (215)
T 1tte_A 2 SRAKRIMKEIQAVKDD-PAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNI 80 (215)
T ss_dssp TTHHHHHHHHHHHHTT-TCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSS
T ss_pred hHHHHHHHHHHHHHhC-CCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcC
Confidence 5789999999999999 569999998876 46699999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCCCCCc-----
Q 029412 81 SSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLG----- 155 (194)
Q Consensus 81 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~~~~~----- 155 (194)
+..+|.||+++|.++|+|++||.+||.+|++||.+|++++|+|.+||++|++|++.|.++||+||++||+.....
T Consensus 81 ~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t~~yA~~~~~~~~~~~ 160 (215)
T 1tte_A 81 SSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYASETSNGQKGNV 160 (215)
T ss_dssp CSSSSCCCSSTTTCCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHSSCCCSCCSSCCC
T ss_pred cCCCCEEECccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhccCCCcccccch
Confidence 955899999999999999999999999999999999999999999999999999999999999999999986431
Q ss_pred --------hHHHHHHHHhcCCChhHHHHHHHHhCCCH
Q 029412 156 --------VEEKVQKLVEMGFPESQVRSTLEIVGGDE 184 (194)
Q Consensus 156 --------~~~~~~~~~~~g~~~~~~~~al~~~~~~~ 184 (194)
++++|+.+++|||++++|+.||+.++||+
T Consensus 161 ~~~~~~g~~~~~v~~~~~mg~~~~~~~~al~~~~~~~ 197 (215)
T 1tte_A 161 EESDLYGIDHDLIDEFESQGFEKDKIVEVLRRLGVKS 197 (215)
T ss_dssp SCSSCCCCSHHHHHHHHHHTCCHHHHHHHHHHSCCSS
T ss_pred hhhhhccccHHHHHHHHHcCCCHHHHHHHHHHcCCCc
Confidence 26799999999999999999999999998
No 5
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=2.9e-51 Score=312.39 Aligned_cols=148 Identities=48% Similarity=0.892 Sum_probs=143.8
Q ss_pred chHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412 2 IDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS 81 (194)
Q Consensus 2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 81 (194)
.+.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 4 ~a~~RL~kEl~~l~~~-~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 82 (151)
T 4gpr_A 4 MAMRRIQKELREIQQD-PPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNIN 82 (151)
T ss_dssp HHHHHHHHHHHHHHHS-CCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred HHHHHHHHHHHHHHhC-CCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceEC
Confidence 5789999999999999 568999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCC
Q 029412 82 SQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKT 151 (194)
Q Consensus 82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~ 151 (194)
.+|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+||++||++
T Consensus 83 -~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~ya~p 151 (151)
T 4gpr_A 83 -KNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYARP 151 (151)
T ss_dssp -TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCCC
T ss_pred -CCCEEEcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 599999999999999999999999999999999999999999999999999999999999999999974
No 6
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=5.9e-51 Score=315.95 Aligned_cols=161 Identities=40% Similarity=0.760 Sum_probs=145.4
Q ss_pred CchHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccc
Q 029412 1 MIDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI 80 (194)
Q Consensus 1 m~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 80 (194)
|++.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus 3 ~~~~~RL~kEl~~l~~~-~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv 81 (169)
T 1yh2_A 3 MQRASRLKRELHMLATE-PPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNI 81 (169)
T ss_dssp HHHHHHHHHHHHHHHHS-CCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred hHHHHHHHHHHHHHHhC-CCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccC
Confidence 46889999999999999 56899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccccc----CCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCCCCCc-
Q 029412 81 SSQSGAICLDILK----DQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLG- 155 (194)
Q Consensus 81 ~~~~G~icl~~l~----~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~~~~~- 155 (194)
+ .+|.||+++|. ++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||+....+
T Consensus 82 ~-~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~~~~~~ 160 (169)
T 1yh2_A 82 D-SAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQKAD 160 (169)
T ss_dssp C-TTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCCC----
T ss_pred C-cCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHHHHHHccccccCC
Confidence 9 68999999998 89999999999999999999999999999999999999999999999999999999976532
Q ss_pred hHHHHHHH
Q 029412 156 VEEKVQKL 163 (194)
Q Consensus 156 ~~~~~~~~ 163 (194)
.++.+++|
T Consensus 161 ~~~~~~~~ 168 (169)
T 1yh2_A 161 EEEMLDNL 168 (169)
T ss_dssp --------
T ss_pred HHHHhhcC
Confidence 35666554
No 7
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=2.2e-51 Score=312.38 Aligned_cols=148 Identities=56% Similarity=0.965 Sum_probs=142.8
Q ss_pred chHHHHHHHHHHHHhcCCCCCeEEEecCC-CceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccc
Q 029412 2 IDFSRVQKELQECSKDIEASGIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI 80 (194)
Q Consensus 2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 80 (194)
++.+||++|+++|+++ ++.|+++.+.++ |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus 1 ~~~~RL~~El~~l~~~-~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni 79 (149)
T 1fxt_A 1 SRAKRIMKEIQAVKDD-PAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNI 79 (149)
T ss_dssp CCHHHHHHHHHHHHHC-GGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred ChHHHHHHHHHHHHhC-CCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCC
Confidence 3679999999999999 568999999877 99999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 029412 81 SSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAK 150 (194)
Q Consensus 81 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~ 150 (194)
+..+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+||++||+
T Consensus 80 ~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~~~a~ 149 (149)
T 1fxt_A 80 SSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS 149 (149)
T ss_dssp CSSSCCBCCHHHHTSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHHHHHHCC
T ss_pred cCCCCeEeCCcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 9658999999999999999999999999999999999999999999999999999999999999999985
No 8
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=4.8e-51 Score=316.18 Aligned_cols=153 Identities=29% Similarity=0.654 Sum_probs=145.9
Q ss_pred Cc--hHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecc
Q 029412 1 MI--DFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHP 78 (194)
Q Consensus 1 m~--~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 78 (194)
|+ +.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+||||
T Consensus 1 Ms~~a~~RL~kEl~~l~~~-~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HP 79 (169)
T 1ayz_A 1 MSTPARRRLMRDFKRMKED-APPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHP 79 (169)
T ss_dssp -CCHHHHHHHHHHHHHHHS-CCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCT
T ss_pred CChHHHHHHHHHHHHHHhC-CCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccC
Confidence 65 789999999999999 569999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCCCCCc
Q 029412 79 NISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLG 155 (194)
Q Consensus 79 nv~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~~~~~ 155 (194)
||+. +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||+.....
T Consensus 80 NI~~-~G~ICl~iL~~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~~~a~~~~~~ 155 (169)
T 1ayz_A 80 NVYA-NGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWEDDMDD 155 (169)
T ss_dssp TBCT-TSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCC-CCeEeehhhccCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHHHHcCCCccC
Confidence 9995 999999999999999999999999999999999999999999999999999999999999999999976543
No 9
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.2e-51 Score=312.41 Aligned_cols=148 Identities=47% Similarity=0.826 Sum_probs=141.6
Q ss_pred hHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccccC
Q 029412 3 DFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISS 82 (194)
Q Consensus 3 ~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 82 (194)
+.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus 6 ~~~RL~kEl~~l~~~-~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~- 83 (154)
T 2c2v_B 6 LPRRIIKETQRLLAE-PVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVD- 83 (154)
T ss_dssp CCHHHHHHHHHHHHS-CCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBC-
T ss_pred HHHHHHHHHHHHHhC-CCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcCc-
Confidence 579999999999999 569999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCCC
Q 029412 83 QSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTS 152 (194)
Q Consensus 83 ~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~~ 152 (194)
.+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+||++||+..
T Consensus 84 ~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~~a~~~ 153 (154)
T 2c2v_B 84 KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNN 153 (154)
T ss_dssp TTCBBCCHHHHTSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred cCCeEEchhccCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCCC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999864
No 10
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=1.2e-50 Score=311.44 Aligned_cols=149 Identities=54% Similarity=0.982 Sum_probs=143.0
Q ss_pred hHHHHHHHHHHHHhcC--CCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccc
Q 029412 3 DFSRVQKELQECSKDI--EASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI 80 (194)
Q Consensus 3 ~~~RL~~E~~~l~~~~--~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 80 (194)
+.+||++|+++|+++. ++.|+++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus 9 a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni 88 (159)
T 2bep_A 9 AVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNI 88 (159)
T ss_dssp HHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred HHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCCccCC
Confidence 7899999999999852 35899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCC
Q 029412 81 SSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKT 151 (194)
Q Consensus 81 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~ 151 (194)
+..+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||++
T Consensus 89 ~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~ 159 (159)
T 2bep_A 89 SSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 159 (159)
T ss_dssp CTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCEEeChhhhccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhhcC
Confidence 96689999999999999999999999999999999999999999999999999999999999999999974
No 11
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=2.6e-50 Score=311.25 Aligned_cols=146 Identities=48% Similarity=0.903 Sum_probs=142.2
Q ss_pred chHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412 2 IDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS 81 (194)
Q Consensus 2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 81 (194)
++.+||++|+++|+++ ++.|+++.+.++|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus 21 ~~~~RL~kEl~~l~~~-~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~ 99 (166)
T 2ayv_A 21 GALKRINKELNDLSKD-PPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNIN 99 (166)
T ss_dssp THHHHHHHHHHHHHHS-CCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC
T ss_pred HHHHHHHHHHHHHHhC-CCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcCC
Confidence 5789999999999999 569999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHc
Q 029412 82 SQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA 149 (194)
Q Consensus 82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a 149 (194)
.+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||
T Consensus 100 -~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~~~A 166 (166)
T 2ayv_A 100 -SQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA 166 (166)
T ss_dssp -TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred -CCCeEEcccccccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 5899999999999999999999999999999999999999999999999999999999999999997
No 12
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=2.8e-50 Score=307.30 Aligned_cols=149 Identities=34% Similarity=0.700 Sum_probs=143.7
Q ss_pred Cc--hHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecc
Q 029412 1 MI--DFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHP 78 (194)
Q Consensus 1 m~--~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 78 (194)
|+ +.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus 1 Ms~~a~~RL~~E~~~l~~~-~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 79 (152)
T 2aak_A 1 MSTPARKRLMRDFKRLQQD-PPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHP 79 (152)
T ss_dssp CCCHHHHHHHHHHHHHHHS-CCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCT
T ss_pred CChHHHHHHHHHHHHHHhC-CCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccC
Confidence 65 789999999999999 568999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCC
Q 029412 79 NISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKT 151 (194)
Q Consensus 79 nv~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~ 151 (194)
||+. +|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+.
T Consensus 80 nv~~-~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~~ 151 (152)
T 2aak_A 80 NIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWTA 151 (152)
T ss_dssp TBCT-TSBBCCGGGTTSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC-
T ss_pred CCCC-CCEEechhhcCCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHCHHHHHHHHHHHHHHHccc
Confidence 9995 99999999999999999999999999999999999999999999999999999999999999999974
No 13
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=2.2e-50 Score=307.22 Aligned_cols=147 Identities=46% Similarity=0.888 Sum_probs=142.7
Q ss_pred chHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412 2 IDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS 81 (194)
Q Consensus 2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 81 (194)
++.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus 4 ~~~~RL~kEl~~l~~~-~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 82 (150)
T 1z2u_A 4 MALKRIQKELQDLGRD-PPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 82 (150)
T ss_dssp HHHHHHHHHHHHHHHS-CCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred HHHHHHHHHHHHHHhC-CCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCC
Confidence 4789999999999998 568999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 029412 82 SQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAK 150 (194)
Q Consensus 82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~ 150 (194)
. +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 83 ~-~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 150 (150)
T 1z2u_A 83 S-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM 150 (150)
T ss_dssp T-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred C-CCeEeeccccCCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4 9999999999999999999999999999999999999999999999999999999999999999985
No 14
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=1.6e-50 Score=307.68 Aligned_cols=147 Identities=50% Similarity=0.921 Sum_probs=142.5
Q ss_pred hHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccccC
Q 029412 3 DFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISS 82 (194)
Q Consensus 3 ~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 82 (194)
+.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 2 ~~~RL~kEl~~l~~~-~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 80 (149)
T 2r0j_A 2 IPRRITKETQNLANE-PPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK 80 (149)
T ss_dssp CCHHHHHHHHHHHHS-CCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHhC-CCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCC
Confidence 469999999999999 5699999999999999999999999999999999999999999999999999999999999995
Q ss_pred CCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCC
Q 029412 83 QSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKT 151 (194)
Q Consensus 83 ~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~ 151 (194)
+|+||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||+.
T Consensus 81 -~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 148 (149)
T 2r0j_A 81 -LGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYANN 148 (149)
T ss_dssp -TCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred -CCEEechhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999985
No 15
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.2e-50 Score=309.60 Aligned_cols=145 Identities=35% Similarity=0.690 Sum_probs=141.2
Q ss_pred hHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccccC
Q 029412 3 DFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISS 82 (194)
Q Consensus 3 ~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 82 (194)
+.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.
T Consensus 14 ~~~RL~kEl~~l~~~-~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 92 (158)
T 1zdn_A 14 IIRLVYKEVTTLTAD-PPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGA 92 (158)
T ss_dssp HHHHHHHHHHHHHHS-CCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHhC-CCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCCCCC
Confidence 679999999999999 5699999999999999999999999999999999999999999999999999999999999995
Q ss_pred CCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHc
Q 029412 83 QSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA 149 (194)
Q Consensus 83 ~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a 149 (194)
+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+||++||
T Consensus 93 -~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~~~A 158 (158)
T 1zdn_A 93 -NGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG 158 (158)
T ss_dssp -TSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred -CCEEehhhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 799999999999999999999999999999999999999999999999999999999999999997
No 16
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=5.2e-50 Score=309.38 Aligned_cols=147 Identities=44% Similarity=0.881 Sum_probs=142.7
Q ss_pred chHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412 2 IDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS 81 (194)
Q Consensus 2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 81 (194)
++.+||++|+++|+++ ++.|+++.+.++|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus 19 ~~~~RL~kEl~~l~~~-~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~ 97 (165)
T 2c4o_A 19 MALKRIHKELNDLARD-PPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 97 (165)
T ss_dssp HHHHHHHHHHHHHHSS-CCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC
T ss_pred HHHHHHHHHHHHHHhC-CCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCC
Confidence 3789999999999998 569999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 029412 82 SQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAK 150 (194)
Q Consensus 82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~ 150 (194)
. +|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 98 ~-~G~ICl~iL~~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~~~a~ 165 (165)
T 2c4o_A 98 S-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 165 (165)
T ss_dssp T-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred C-CCeEeehhhcCCCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4 9999999999999999999999999999999999999999999999999999999999999999985
No 17
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=2.4e-50 Score=308.54 Aligned_cols=149 Identities=46% Similarity=0.812 Sum_probs=144.2
Q ss_pred chHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412 2 IDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS 81 (194)
Q Consensus 2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 81 (194)
++.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus 5 ~~~~RL~kE~~~l~~~-~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 83 (155)
T 1jat_A 5 SLPKRIIKETEKLVSD-PVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNID 83 (155)
T ss_dssp SCCHHHHHHHHHHHHS-CCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBC
T ss_pred HHHHHHHHHHHHHHhC-CCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCC
Confidence 4679999999999998 569999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCCC
Q 029412 82 SQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTS 152 (194)
Q Consensus 82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~~ 152 (194)
.+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||+..
T Consensus 84 -~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~~~a~~~ 153 (155)
T 1jat_A 84 -RLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKKK 153 (155)
T ss_dssp -TTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSEEC
T ss_pred -CCCEEEchhhccCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcccC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999864
No 18
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=7.3e-50 Score=315.14 Aligned_cols=150 Identities=55% Similarity=1.004 Sum_probs=141.3
Q ss_pred chHHHHHHHHHHHHhcCC------------CCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCc
Q 029412 2 IDFSRVQKELQECSKDIE------------ASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKM 69 (194)
Q Consensus 2 ~~~~RL~~E~~~l~~~~~------------~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v 69 (194)
.+.+||++|+++|+++.+ ..|+++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|
T Consensus 32 ~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V 111 (193)
T 2f4z_A 32 REQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKM 111 (193)
T ss_dssp CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEE
T ss_pred HHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeE
Confidence 467999999999999843 27999999999999999999999999999999999999999999999999
Q ss_pred ccccceecccccCCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHc
Q 029412 70 HFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA 149 (194)
Q Consensus 70 ~f~t~i~Hpnv~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a 149 (194)
+|.|+||||||+..+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+||++||
T Consensus 112 ~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l~~~d~~~f~~~ar~~t~~ya 191 (193)
T 2f4z_A 112 KFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFA 191 (193)
T ss_dssp EESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred EEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHc
Confidence 99999999999966899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 029412 150 KT 151 (194)
Q Consensus 150 ~~ 151 (194)
+.
T Consensus 192 ~~ 193 (193)
T 2f4z_A 192 KE 193 (193)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 19
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=3.5e-49 Score=304.73 Aligned_cols=147 Identities=28% Similarity=0.586 Sum_probs=141.3
Q ss_pred chHHHHHHHHHHHHhcCCCCCeEEEecCC-CceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccc
Q 029412 2 IDFSRVQKELQECSKDIEASGIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI 80 (194)
Q Consensus 2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 80 (194)
++.+||++|+++|+++ ++.|+++.+.++ |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||
T Consensus 3 ~a~~RL~kEl~~l~~~-~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV 81 (164)
T 3h8k_A 3 TALKRLMAEYKQLTLN-PPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 81 (164)
T ss_dssp HHHHHHHHHHHHHHHS-CCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTB
T ss_pred HHHHHHHHHHHHHHhC-CCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCC
Confidence 4789999999999999 569999998765 99999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccccc-------------CCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHH
Q 029412 81 SSQSGAICLDILK-------------DQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTES 147 (194)
Q Consensus 81 ~~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~ 147 (194)
+ .+|+||+++|. ++|+|++||++||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++
T Consensus 82 ~-~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~ 160 (164)
T 3h8k_A 82 Y-PDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 160 (164)
T ss_dssp C-TTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred C-CCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 9 59999999996 789999999999999999999999999999999999999999999999999999
Q ss_pred HcC
Q 029412 148 FAK 150 (194)
Q Consensus 148 ~a~ 150 (194)
++.
T Consensus 161 s~~ 163 (164)
T 3h8k_A 161 SLG 163 (164)
T ss_dssp HHT
T ss_pred hhc
Confidence 875
No 20
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=3.2e-49 Score=302.63 Aligned_cols=147 Identities=33% Similarity=0.630 Sum_probs=141.7
Q ss_pred chHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412 2 IDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS 81 (194)
Q Consensus 2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 81 (194)
++.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 9 ~~~~RL~kEl~~l~~~-~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 87 (156)
T 2e2c_A 9 SVSKRLQQELRTLLMS-GDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVD 87 (156)
T ss_dssp CHHHHHHHHHHHHHHH-CCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred HHHHHHHHHHHHHHhC-CCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCCc
Confidence 4789999999999998 568999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCC
Q 029412 82 SQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKT 151 (194)
Q Consensus 82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~ 151 (194)
. +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++| +|+++|.++||+|+++||..
T Consensus 88 ~-~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~~~~~~ 155 (156)
T 2e2c_A 88 Q-SGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTAQSD 155 (156)
T ss_dssp T-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHHHHHHHHC
T ss_pred c-CceEECccccccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHHHHHhccC
Confidence 5 99999999999999999999999999999999999999999999999 89999999999999999853
No 21
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=2.8e-49 Score=304.66 Aligned_cols=147 Identities=32% Similarity=0.621 Sum_probs=140.9
Q ss_pred chHHHHHHHHHHHHhcCCCCCeEEEecCC-----CceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCccccccee
Q 029412 2 IDFSRVQKELQECSKDIEASGIKVTPVSD-----NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVW 76 (194)
Q Consensus 2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~-----~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 76 (194)
+|.+||++|+++|+++ ++.|+++.|.++ |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||
T Consensus 10 ~~~~RL~kEl~~l~~~-~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i~ 88 (163)
T 3rcz_B 10 LCKTRLQEERKQWRRD-HPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLF 88 (163)
T ss_dssp HHHHHHHHHHHHHHHS-CCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred HHHHHHHHHHHHHHhC-CCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCCc
Confidence 5889999999999999 569999998765 9999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcccccccccC--CCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 029412 77 HPNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAK 150 (194)
Q Consensus 77 Hpnv~~~~G~icl~~l~~--~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~ 150 (194)
||||+ .+|.||+++|.. +|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||.
T Consensus 89 HPnV~-~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~~~~ya~ 163 (163)
T 3rcz_B 89 HPNVY-PSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENAP 163 (163)
T ss_dssp STTBC-TTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred cCCCC-CCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhCc
Confidence 99999 599999999975 49999999999999999999999999999999999999999999999999999984
No 22
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=4.3e-49 Score=302.15 Aligned_cols=146 Identities=33% Similarity=0.666 Sum_probs=140.1
Q ss_pred hHHHHHHHHHHHHhcCCCCCeEEEecC-----CCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceec
Q 029412 3 DFSRVQKELQECSKDIEASGIKVTPVS-----DNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWH 77 (194)
Q Consensus 3 ~~~RL~~E~~~l~~~~~~~~i~v~~~~-----~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 77 (194)
+.+||++|+++|+++ ++.|+++.|.+ +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++||
T Consensus 5 a~~RL~kE~~~l~~~-~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 83 (157)
T 2gjd_A 5 CLQRLQEERKKWRKD-HPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYH 83 (157)
T ss_dssp HHHHHHHHHHHHHHC-CCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTCCC
T ss_pred HHHHHHHHHHHHHhC-CCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCCcc
Confidence 789999999999999 56999998864 489999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcccccccccC--CCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 029412 78 PNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAK 150 (194)
Q Consensus 78 pnv~~~~G~icl~~l~~--~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~ 150 (194)
|||+ .+|.||+++|.. +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 84 Pnv~-~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~ 157 (157)
T 2gjd_A 84 PNVY-PSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYSK 157 (157)
T ss_dssp TTBC-TTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHHHHCHHHHHHHHHHHHHHTBC
T ss_pred CCCC-CCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 9999 589999999987 79999999999999999999999999999999999999999999999999999995
No 23
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=4e-49 Score=304.68 Aligned_cols=146 Identities=32% Similarity=0.602 Sum_probs=140.5
Q ss_pred hHHHHHHHHHHHHhcCCCCCeEEEecC-CCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412 3 DFSRVQKELQECSKDIEASGIKVTPVS-DNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS 81 (194)
Q Consensus 3 ~~~RL~~E~~~l~~~~~~~~i~v~~~~-~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 81 (194)
+.+||++|+++|+++ ++.|+++.+.+ +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+
T Consensus 5 a~~RL~kEl~~l~~~-~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~ 83 (165)
T 2ucz_A 5 AQKRLLKELQQLIKD-SPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIY 83 (165)
T ss_dssp HHHHHHHHHHHHHHS-CCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTBC
T ss_pred HHHHHHHHHHHHHhC-CCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccCCCC
Confidence 789999999999998 56999999875 6999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccc-------------cCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHH
Q 029412 82 SQSGAICLDIL-------------KDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESF 148 (194)
Q Consensus 82 ~~~G~icl~~l-------------~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~ 148 (194)
. +|+||+++| .++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|++++
T Consensus 84 ~-~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~y~~~v~~~~~~~ 162 (165)
T 2ucz_A 84 P-NGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILKS 162 (165)
T ss_dssp T-TSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred C-CCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 5 899999999 68999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 029412 149 AK 150 (194)
Q Consensus 149 a~ 150 (194)
+.
T Consensus 163 ~~ 164 (165)
T 2ucz_A 163 LG 164 (165)
T ss_dssp TT
T ss_pred hh
Confidence 75
No 24
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=3.2e-49 Score=302.29 Aligned_cols=149 Identities=28% Similarity=0.542 Sum_probs=142.2
Q ss_pred CchHHHHHHHHHHHHhcCCCCCeEE-EecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccc
Q 029412 1 MIDFSRVQKELQECSKDIEASGIKV-TPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPN 79 (194)
Q Consensus 1 m~~~~RL~~E~~~l~~~~~~~~i~v-~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 79 (194)
|++.+||++|+++|+++ ++.|+++ .+.++|+++|+++|. |++|||+||+|+++|.||++||++||+|+|.|++||||
T Consensus 3 m~~~~RL~kEl~~l~~~-~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 80 (155)
T 1wzv_A 3 HMASMRVVKELEDLQKK-PPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPN 80 (155)
T ss_dssp --CHHHHHHHHHHHHHS-CCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred chHHHHHHHHHHHHHhC-CCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCc
Confidence 77999999999999999 4589999 788899999999999 99999999999999999999999999999999999999
Q ss_pred ccCCCcccccccc-cCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCCC
Q 029412 80 ISSQSGAICLDIL-KDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTS 152 (194)
Q Consensus 80 v~~~~G~icl~~l-~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~~ 152 (194)
|+. +|.||+++| .++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+..
T Consensus 81 V~~-~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~~ 153 (155)
T 1wzv_A 81 VDE-NGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVDR 153 (155)
T ss_dssp BCT-TCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCEEC
T ss_pred CCC-CCeEeecCCCccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 995 999999999 899999999999999999999999999999999999999999999999999999999864
No 25
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=5.9e-49 Score=310.30 Aligned_cols=146 Identities=45% Similarity=0.780 Sum_probs=142.2
Q ss_pred hHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccccC
Q 029412 3 DFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISS 82 (194)
Q Consensus 3 ~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 82 (194)
+.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+||||||+.
T Consensus 49 a~~RL~kEl~~l~~~-~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~ 127 (194)
T 3bzh_A 49 SAKRIQKELADITLD-PPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINS 127 (194)
T ss_dssp HHHHHHHHHHHHHHS-CCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHhC-CCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceECC
Confidence 689999999999998 5689999999999999999999999999999999999999999999999999999999999994
Q ss_pred CCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 029412 83 QSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAK 150 (194)
Q Consensus 83 ~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~ 150 (194)
+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 128 -~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~~ya~ 194 (194)
T 3bzh_A 128 -QGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 194 (194)
T ss_dssp -TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred -CCceechhhhccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 8999999999999999999999999999999999999999999999999999999999999999985
No 26
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=1.5e-48 Score=300.30 Aligned_cols=147 Identities=36% Similarity=0.686 Sum_probs=139.8
Q ss_pred hHHHHHHHHHHHHhcCCCCCeEEEecC-----CCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceec
Q 029412 3 DFSRVQKELQECSKDIEASGIKVTPVS-----DNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWH 77 (194)
Q Consensus 3 ~~~RL~~E~~~l~~~~~~~~i~v~~~~-----~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 77 (194)
+.+||++|+++|+++ ++.|+.+.+.. +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++||
T Consensus 8 a~~RL~kE~~~l~~~-~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 86 (161)
T 2grr_A 8 ALSRLAQERKAWRKD-HPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFH 86 (161)
T ss_dssp HHHHHHHHHHHHHHS-CCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCS
T ss_pred HHHHHHHHHHHHHhC-CCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecCccc
Confidence 679999999999999 56899998753 689999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcccccccccC--CCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCC
Q 029412 78 PNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKT 151 (194)
Q Consensus 78 pnv~~~~G~icl~~l~~--~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~ 151 (194)
|||+ .+|.||+++|.. +|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+||++||+.
T Consensus 87 Pnv~-~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~~ 161 (161)
T 2grr_A 87 PNVY-PSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS 161 (161)
T ss_dssp TTBC-TTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC-
T ss_pred CCCC-CCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Confidence 9999 589999999976 899999999999999999999999999999999999999999999999999999963
No 27
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=7.3e-49 Score=299.26 Aligned_cols=147 Identities=29% Similarity=0.637 Sum_probs=139.8
Q ss_pred chHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412 2 IDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS 81 (194)
Q Consensus 2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 81 (194)
++.+||++|+++|++. |+++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+
T Consensus 2 sa~~Rl~kEl~~l~~~----~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~ 77 (152)
T 2onu_A 2 TSLTRKQCDFTKLIMA----GYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVD 77 (152)
T ss_dssp -CCCHHHHTHHHHHHH----TCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred hHHHHHHHHHHhcCcC----CCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCc
Confidence 5679999999999875 688888899999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccccCCCCcccCHHHHHHH-HHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCCC
Q 029412 82 SQSGAICLDILKDQWSPALTLKTALLS-VQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTS 152 (194)
Q Consensus 82 ~~~G~icl~~l~~~W~p~~~i~~il~~-i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~~ 152 (194)
..+|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+||++|++|+++|.++||+|+++||+..
T Consensus 78 ~~~G~iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~~~~a~~~ 149 (152)
T 2onu_A 78 EASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYASKD 149 (152)
T ss_dssp TTTCBBCHHHHHHHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHSCGG
T ss_pred CcCCeEecccccccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccCc
Confidence 668999999999999999999999999 68999999999999999999999999999999999999999864
No 28
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3.4e-48 Score=302.42 Aligned_cols=147 Identities=35% Similarity=0.605 Sum_probs=141.5
Q ss_pred chHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412 2 IDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS 81 (194)
Q Consensus 2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 81 (194)
++.+||++|+++|+++ ++.||++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+||||||+
T Consensus 30 ~~~~RL~kEl~~l~~~-~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~ 108 (179)
T 1i7k_A 30 PVGKRLQQELMTLMMS-GDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVD 108 (179)
T ss_dssp CHHHHHHHHHHHHHHH-CCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBC
T ss_pred HHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCccc
Confidence 4789999999999998 568999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCC
Q 029412 82 SQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKT 151 (194)
Q Consensus 82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~ 151 (194)
. +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++| +|+++|.++|++++++++..
T Consensus 109 ~-~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~~~~~~ 176 (179)
T 1i7k_A 109 T-QGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVTS 176 (179)
T ss_dssp T-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTTCC-
T ss_pred c-CCeEEcccCcCcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHHHHhcc
Confidence 5 89999999999999999999999999999999999999999999999 99999999999999998875
No 29
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=1.6e-47 Score=296.25 Aligned_cols=145 Identities=30% Similarity=0.589 Sum_probs=138.2
Q ss_pred hHHHHHHHHHHHHhcCCCCCeEEEec-CCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412 3 DFSRVQKELQECSKDIEASGIKVTPV-SDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS 81 (194)
Q Consensus 3 ~~~RL~~E~~~l~~~~~~~~i~v~~~-~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 81 (194)
+.+||++|+++|+++ ++.|+++.+. ++|++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus 15 ~~~RL~kEl~~l~~~-~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 92 (167)
T 3fn1_B 15 RDKLLVKEVAELEAN-LPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNIT 92 (167)
T ss_dssp HHHHHHHHHHHHGGG-SCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSSBC
T ss_pred HHHHHHHHHHHHHhC-CCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCCCC
Confidence 689999999999999 5689999864 67899999999 89999999999999999999999999999999999999999
Q ss_pred CCCcccccccccC------CCCcccCHHHHHHHHHHhhCC-CCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 029412 82 SQSGAICLDILKD------QWSPALTLKTALLSVQALLSA-PAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAK 150 (194)
Q Consensus 82 ~~~G~icl~~l~~------~W~p~~~i~~il~~i~~ll~~-p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~ 150 (194)
.+|.||+++|.. +|+|+++|.+||.+|++||.+ |++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 93 -~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~A~ 167 (167)
T 3fn1_B 93 -ETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR 167 (167)
T ss_dssp -TTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred -CCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 699999999975 799999999999999999999 69999999999999999999999999999999995
No 30
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=3.1e-47 Score=295.75 Aligned_cols=148 Identities=32% Similarity=0.579 Sum_probs=138.4
Q ss_pred hHHHHHHHHHHHHh-c-CC-----CC---CeEEEe-cCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCccc
Q 029412 3 DFSRVQKELQECSK-D-IE-----AS---GIKVTP-VSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHF 71 (194)
Q Consensus 3 ~~~RL~~E~~~l~~-~-~~-----~~---~i~v~~-~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f 71 (194)
+.+||++|+++|++ . .+ +. ++.+.+ .++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|
T Consensus 7 ~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f 86 (172)
T 2y9m_A 7 CMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISF 86 (172)
T ss_dssp HHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEE
T ss_pred HHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCEEEE
Confidence 68999999999998 4 22 23 466778 78899999999999999999999999999999999999999999
Q ss_pred cc-ceecccccCCCccccccccc-CCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHH-CHHHHHHHHHHHHHHH
Q 029412 72 VT-KVWHPNISSQSGAICLDILK-DQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLK-DHQTFLSTARYWTESF 148 (194)
Q Consensus 72 ~t-~i~Hpnv~~~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~-~~~~f~~~a~~~~~~~ 148 (194)
.| +||||||+..+|.||+++|. ++|+|+++|.+||.+|++||.+|++++|+|.+||++|++ |+++|.++||+|++++
T Consensus 87 ~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~d~~~f~~~~~~~~~~~ 166 (172)
T 2y9m_A 87 MQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYFLAER 166 (172)
T ss_dssp CTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred eeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 99 99999997569999999998 899999999999999999999999999999999999999 9999999999999998
Q ss_pred cC
Q 029412 149 AK 150 (194)
Q Consensus 149 a~ 150 (194)
+.
T Consensus 167 ~~ 168 (172)
T 2y9m_A 167 ER 168 (172)
T ss_dssp HC
T ss_pred Hh
Confidence 75
No 31
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.8e-47 Score=296.09 Aligned_cols=143 Identities=25% Similarity=0.553 Sum_probs=136.2
Q ss_pred hHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccccC
Q 029412 3 DFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISS 82 (194)
Q Consensus 3 ~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 82 (194)
+.+||++|+++|+++ ++.|+++.+.++|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.
T Consensus 24 a~~RL~kEl~~l~~~-~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~ 102 (169)
T 1yrv_A 24 AYLLLHRDFCDLKEN-NYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDP 102 (169)
T ss_dssp HHHHHHHHHHHHHHH-CCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHhC-CCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCcccC
Confidence 689999999999998 5689999999999999999999999999999999999999999999999999999999999954
Q ss_pred CCccccccccc--CCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHH
Q 029412 83 QSGAICLDILK--DQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTES 147 (194)
Q Consensus 83 ~~G~icl~~l~--~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~ 147 (194)
.+|.||+++|. ++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++ ++++++
T Consensus 103 ~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~~v~~ 168 (169)
T 1yrv_A 103 HTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTI-LRLFNR 168 (169)
T ss_dssp TTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HHHHC-
T ss_pred CCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HHHhhC
Confidence 79999999998 89999999999999999999999999999999999999999999998 877653
No 32
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=2.5e-48 Score=297.03 Aligned_cols=149 Identities=35% Similarity=0.709 Sum_probs=136.0
Q ss_pred CchHHHHHHHHHHHHhcCCCCCeEEEe-cCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccc
Q 029412 1 MIDFSRVQKELQECSKDIEASGIKVTP-VSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPN 79 (194)
Q Consensus 1 m~~~~RL~~E~~~l~~~~~~~~i~v~~-~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 79 (194)
|++.+||++|+++|+++ ++.|+.+.+ .++|+++|+++|. |++|||+||+|+++|.||++||++||+|+|.|++||||
T Consensus 1 m~a~~RL~kEl~~l~~~-~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 78 (154)
T 1c4z_D 1 MAASRRLMKELEEIRKC-GMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPN 78 (154)
T ss_dssp ---CTTHHHHHTTCSSS-CCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred CcHHHHHHHHHHHHHhC-CCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCcccc
Confidence 78999999999999998 458888654 6789999999998 99999999999999999999999999999999999999
Q ss_pred ccCCCccccccccc-CCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCCC
Q 029412 80 ISSQSGAICLDILK-DQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTS 152 (194)
Q Consensus 80 v~~~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~~ 152 (194)
|+. +|.||+++|. ++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||+..
T Consensus 79 v~~-~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~~ 151 (154)
T 1c4z_D 79 IDE-KGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEKR 151 (154)
T ss_dssp BCT-TCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC----
T ss_pred CCC-CCEEECCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHhcccC
Confidence 994 8999999996 89999999999999999999999999999999999999999999999999999999864
No 33
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=1.1e-46 Score=295.36 Aligned_cols=147 Identities=31% Similarity=0.595 Sum_probs=139.4
Q ss_pred chHHHHHHHHHHHHhcCCCCCeEEE-ecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccc
Q 029412 2 IDFSRVQKELQECSKDIEASGIKVT-PVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI 80 (194)
Q Consensus 2 ~~~~RL~~E~~~l~~~~~~~~i~v~-~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 80 (194)
++.+||++|+++|+++ ++.|+++. +.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 7 ~a~kRL~kEl~~l~~~-~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV 85 (183)
T 3rz3_A 7 SSQKALLLELKGLQEE-PVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNI 85 (183)
T ss_dssp HHHHHHHHHHHHHHHS-CCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCTTB
T ss_pred HHHHHHHHHHHHHHhC-CCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccCCC
Confidence 4789999999999999 56899999 667899999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccccc-------------CCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHH------CHHHHHHHH
Q 029412 81 SSQSGAICLDILK-------------DQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLK------DHQTFLSTA 141 (194)
Q Consensus 81 ~~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~------~~~~f~~~a 141 (194)
+. +|.||+++|. ++|+|+++|++||.+|++||.+|++++|+|.+||++|++ |+++|.++|
T Consensus 86 ~~-~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~~~~~~~y~~~v 164 (183)
T 3rz3_A 86 YE-TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDII 164 (183)
T ss_dssp CT-TSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred CC-CCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcccccccHHHHHHHH
Confidence 95 9999999996 889999999999999999999999999999999999998 889999999
Q ss_pred HHHHHHHcC
Q 029412 142 RYWTESFAK 150 (194)
Q Consensus 142 ~~~~~~~a~ 150 (194)
+++++++..
T Consensus 165 ~~~v~~s~~ 173 (183)
T 3rz3_A 165 RKQVLGTKV 173 (183)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998765
No 34
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.8e-47 Score=298.13 Aligned_cols=145 Identities=31% Similarity=0.647 Sum_probs=137.8
Q ss_pred hHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccccC
Q 029412 3 DFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISS 82 (194)
Q Consensus 3 ~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 82 (194)
+.+||++|+++|+. .|+++.+. +|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.
T Consensus 26 a~~RL~kEl~~l~~----~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~ 100 (179)
T 2z5d_A 26 GKRRMDTDVIKLIE----SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDE 100 (179)
T ss_dssp HHHHHHHHHHHHHH----SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred HHHHHHHHHHhcCc----CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCC
Confidence 57999999999985 37888886 67899999999999999999999999999999999999999999999999995
Q ss_pred CCcccccccccCCCCcccCHHHHHHH-HHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCCC
Q 029412 83 QSGAICLDILKDQWSPALTLKTALLS-VQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTS 152 (194)
Q Consensus 83 ~~G~icl~~l~~~W~p~~~i~~il~~-i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~~ 152 (194)
.+|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+||++|++|+++|.++||+|+++||+..
T Consensus 101 ~~G~ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~~~~a~~~ 171 (179)
T 2z5d_A 101 ASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATEE 171 (179)
T ss_dssp TTCBBCHHHHHHHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSSHH
T ss_pred CCCeEeccccccCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHcccc
Confidence 58999999999999999999999999 99999999999999999999999999999999999999999853
No 35
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=7.5e-47 Score=293.52 Aligned_cols=141 Identities=32% Similarity=0.698 Sum_probs=107.7
Q ss_pred chHHHHHHHHHHHHhcCCCCCeEEEecC-CCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccc
Q 029412 2 IDFSRVQKELQECSKDIEASGIKVTPVS-DNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI 80 (194)
Q Consensus 2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~-~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 80 (194)
++.+||++|+++|+++ ++.|+++.+.+ +|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus 17 ~~~~rL~kEl~~l~~~-~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPNV 95 (172)
T 2awf_A 17 RGSLLLRRQLAELNKN-PVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNV 95 (172)
T ss_dssp TTHHHHHHHHHHHHHS-CCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTB
T ss_pred HHHHHHHHHHHHHHhC-CCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCCC
Confidence 4789999999999998 56999999875 799999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccccc-------------CCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHH-HHHHHHHHH
Q 029412 81 SSQSGAICLDILK-------------DQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQ-TFLSTARYW 144 (194)
Q Consensus 81 ~~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~-~f~~~a~~~ 144 (194)
+. +|.||+++|. ++|+|+++|++||.+|++||.+|++++|+|.+||++|++|++ +|.++||+|
T Consensus 96 ~~-~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d~~~~f~~~vr~~ 172 (172)
T 2awf_A 96 DK-NGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARC 172 (172)
T ss_dssp CT-TCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC-----------------------------
T ss_pred CC-CCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHCcHHHHHHHHHhC
Confidence 95 8999999996 689999999999999999999999999999999999999999 999999975
No 36
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=5.9e-47 Score=293.68 Aligned_cols=146 Identities=29% Similarity=0.566 Sum_probs=136.5
Q ss_pred CchHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccc
Q 029412 1 MIDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI 80 (194)
Q Consensus 1 m~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 80 (194)
|++.+||++|+++|+++. .++ +.++|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus 11 ~~~~~RL~~El~~l~~~~--~~v---~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi 85 (171)
T 1yf9_A 11 LRSNRRREMDYMRLCNST--RKV---YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNV 85 (171)
T ss_dssp --CCHHHHHHHHHHHSSS--SCE---EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTB
T ss_pred ccHHHHHHHHHHHHHhCC--CCC---CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccC
Confidence 467899999999999983 344 357899999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccccccCCCCcccCHHHHHHHH-HHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCC
Q 029412 81 SSQSGAICLDILKDQWSPALTLKTALLSV-QALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKT 151 (194)
Q Consensus 81 ~~~~G~icl~~l~~~W~p~~~i~~il~~i-~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~ 151 (194)
+..+|.||+++|.++|+|+++|.+||.+| ++||.+|++++|+|.+||++|++|++.|.++||+|+++||+.
T Consensus 86 ~~~~G~iCl~iL~~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~~~~a~~ 157 (171)
T 1yf9_A 86 DERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHATP 157 (171)
T ss_dssp CTTTCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCCH
T ss_pred cccCCeEeccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcCh
Confidence 95589999999999999999999999997 799999999999999999999999999999999999999985
No 37
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=5.4e-46 Score=322.46 Aligned_cols=157 Identities=42% Similarity=0.794 Sum_probs=149.7
Q ss_pred chHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412 2 IDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS 81 (194)
Q Consensus 2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 81 (194)
++.+||++|+++|+++ ++.|+++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+
T Consensus 3 ~a~~RL~kEl~~l~~~-~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 81 (399)
T 4ddg_A 3 MALKRIHKELNDLARD-PPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 81 (399)
T ss_dssp HHHHHHHHHHHHHHHS-CCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBC
T ss_pred HHHHHHHHHHHHHHhC-CCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccC
Confidence 4789999999999999 568999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCCCCCchHHHH
Q 029412 82 SQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKV 160 (194)
Q Consensus 82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~~~~~~~~~~ 160 (194)
. +|.||+++|+++|+|++||.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+||++||+.....+++..
T Consensus 82 ~-~G~iCl~il~~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~~~a~~~v~~De~i~ 159 (399)
T 4ddg_A 82 S-NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAMGGSAYDEAIM 159 (399)
T ss_dssp T-TCBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred C-CCeEeCcccccCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhhccccchhHHHH
Confidence 4 99999999999999999999999999999999999999999999999999999999999999999999877665433
No 38
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=6e-46 Score=285.40 Aligned_cols=142 Identities=28% Similarity=0.570 Sum_probs=134.8
Q ss_pred chHHHHHHHHHHHHhcCCCCCeEEE-ecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccc
Q 029412 2 IDFSRVQKELQECSKDIEASGIKVT-PVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI 80 (194)
Q Consensus 2 ~~~~RL~~E~~~l~~~~~~~~i~v~-~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 80 (194)
++.+||++|+++| + ++.|+++. +.++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|||||
T Consensus 6 ~~~~RL~kEl~~l--~-~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 81 (160)
T 1y8x_A 6 AAQLRIQKDINEL--N-LPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNI 81 (160)
T ss_dssp HHHHHHHHHHHTC--C-CCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred HHHHHHHHHHHhc--C-CCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcC
Confidence 3789999999999 3 45899998 7889999999998 9999999999999999999999999999999999999999
Q ss_pred cCCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHH
Q 029412 81 SSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESF 148 (194)
Q Consensus 81 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~ 148 (194)
+. +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|++..
T Consensus 82 ~~-~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~~~ 148 (160)
T 1y8x_A 82 DL-EGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGG 148 (160)
T ss_dssp CT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHSE
T ss_pred CC-CCeEEcccchhhccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhhC
Confidence 95 89999999999999999999999999999999999999999999999999999999999998754
No 39
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.9e-45 Score=287.31 Aligned_cols=143 Identities=27% Similarity=0.535 Sum_probs=135.4
Q ss_pred chHHHHHHHHHHHHhcCCCCCeEEE-ecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccc
Q 029412 2 IDFSRVQKELQECSKDIEASGIKVT-PVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI 80 (194)
Q Consensus 2 ~~~~RL~~E~~~l~~~~~~~~i~v~-~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 80 (194)
++.+||++|+++| + ++.|+++. +.++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus 26 ~~~~RL~kEl~~l--~-~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNV 101 (180)
T 2nvu_C 26 AAQLRIQKDINEL--N-LPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNI 101 (180)
T ss_dssp HHHHHHHHHHHTC--C-CCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred HHHHHHHHHHHhc--C-CCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCCC
Confidence 4789999999999 3 45899998 7889999999998 9999999999999999999999999999999999999999
Q ss_pred cCCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHc
Q 029412 81 SSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA 149 (194)
Q Consensus 81 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a 149 (194)
+. +|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++|++|++...
T Consensus 102 ~~-~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~d~~~f~~~v~~~v~~~~ 169 (180)
T 2nvu_C 102 DL-EGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGY 169 (180)
T ss_dssp CT-TSBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHSEE
T ss_pred CC-CCcEEcccccccCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhhCC
Confidence 95 899999999999999999999999999999999999999999999999999999999999987543
No 40
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=6.5e-45 Score=286.56 Aligned_cols=144 Identities=27% Similarity=0.535 Sum_probs=135.9
Q ss_pred chHHHHHHHHHHHHhcCCCCCeEEE----ecCCCce---EEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccc
Q 029412 2 IDFSRVQKELQECSKDIEASGIKVT----PVSDNLV---HLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTK 74 (194)
Q Consensus 2 ~~~~RL~~E~~~l~~~~~~~~i~v~----~~~~~~~---~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 74 (194)
++.+||++|+++|+ +++|+++. +.++|++ +|+++|. |++|||+||+|+++|.||++||++||+|+|.|+
T Consensus 29 ~a~~RL~kEl~~l~---~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 104 (190)
T 3o2u_A 29 AARIRLKRDLDSLD---LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKK 104 (190)
T ss_dssp HHHHHHHHHHHTCC---CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEECSC
T ss_pred HHHHHHHHHHHhcc---CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEEecC
Confidence 47899999999998 34799998 7889999 9999997 888999999999999999999999999999999
Q ss_pred eecccccCCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 029412 75 VWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAK 150 (194)
Q Consensus 75 i~Hpnv~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~ 150 (194)
||||||+. +|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|++.+..
T Consensus 105 i~HPnV~~-~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~~~d~~~f~~~ar~~~~~~~~ 179 (190)
T 3o2u_A 105 IFHPNIDL-KGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGGSI 179 (190)
T ss_dssp CCCTTBCT-TSBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHTCHHHHHHHHHHHHBTCEE
T ss_pred cccCCCCC-CCeEechhccCCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHhcCC
Confidence 99999994 9999999999999999999999999999999999999999999999999999999999999965543
No 41
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=6.4e-43 Score=270.35 Aligned_cols=140 Identities=25% Similarity=0.464 Sum_probs=130.3
Q ss_pred chHHHHHHHHHHHHhcC-----------CCCCeEEEecCCCceEEEEEEeCCCCCCCC--CCeEEEEeeCCCCCCCCCCC
Q 029412 2 IDFSRVQKELQECSKDI-----------EASGIKVTPVSDNLVHLTGIIPGPVGTPYE--GGTFRLDITLPDGYPFEPPK 68 (194)
Q Consensus 2 ~~~~RL~~E~~~l~~~~-----------~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~--gg~f~~~i~fp~~YP~~pP~ 68 (194)
++.+||++|+++|+++. ++.++.+.+.++|+++|+++|.||++|||+ ||.|+++|.||++||++||+
T Consensus 8 ~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP~ 87 (167)
T 4ds2_A 8 ISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPT 87 (167)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCCE
T ss_pred HHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCCE
Confidence 37899999999999974 157899999999999999999999999999 99999999999999999999
Q ss_pred cccccceecccccCCCcccccccccCCCCcccCHHHHHH-HHHHhhCC--CCCCCchhHHHHHHHHHCHHHHHHHHH
Q 029412 69 MHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALL-SVQALLSA--PAPDDPQDAVVAQQYLKDHQTFLSTAR 142 (194)
Q Consensus 69 v~f~t~i~Hpnv~~~~G~icl~~l~~~W~p~~~i~~il~-~i~~ll~~--p~~~~p~n~~a~~~~~~~~~~f~~~a~ 142 (194)
|+|.|++|||||+ .+|.||+++|.++|+|+++++++|+ .|++|+.+ |++++|+|.+||++|++|+++|.++||
T Consensus 88 v~f~t~i~HPnv~-~~G~iCl~il~~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~~~f~~~vr 163 (167)
T 4ds2_A 88 VRFVTPVYSPLVT-GEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVR 163 (167)
T ss_dssp EEESSCCCCSSCC-TTSCCCTHHHHTTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHHCHHHHHHHHT
T ss_pred EEEeCCcccccCC-CCCEEEcccCcCCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHHCHHHHHHHHh
Confidence 9999999999999 6999999999999999999999754 56777775 899999999999999999999999998
No 42
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=2.5e-42 Score=289.45 Aligned_cols=149 Identities=27% Similarity=0.491 Sum_probs=137.1
Q ss_pred chHHHHHHHHHHHHhcCCC---CCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccc----
Q 029412 2 IDFSRVQKELQECSKDIEA---SGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTK---- 74 (194)
Q Consensus 2 ~~~~RL~~E~~~l~~~~~~---~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~---- 74 (194)
.+.+||++|+++|+++.++ .++.+.+.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+
T Consensus 76 ~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~g~~ 155 (323)
T 3ceg_A 76 ARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHS 155 (323)
T ss_dssp HHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCSTTTT
T ss_pred HHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccCCCc
Confidence 3789999999999998442 256677889999999999999999999999999999999999999999999998
Q ss_pred -eecccccCCCccccccccc-------CCCCccc-CHHHHHHHHHHhhC--CCCCCCchhHHH--HHHHHHCHHHHHHHH
Q 029412 75 -VWHPNISSQSGAICLDILK-------DQWSPAL-TLKTALLSVQALLS--APAPDDPQDAVV--AQQYLKDHQTFLSTA 141 (194)
Q Consensus 75 -i~Hpnv~~~~G~icl~~l~-------~~W~p~~-~i~~il~~i~~ll~--~p~~~~p~n~~a--~~~~~~~~~~f~~~a 141 (194)
||||||+ .+|.||+++|. ++|+|++ +|.+||.+|++||. +|++++|+|.++ +.+|.+|++.|.++|
T Consensus 156 ~ifHPNV~-~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~Y~~~v 234 (323)
T 3ceg_A 156 VRFNPNLY-NDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNI 234 (323)
T ss_dssp CCCBTTBC-TTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHHHHHHH
T ss_pred ccccCCCC-cCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhhhhhhHHHHHHHH
Confidence 9999999 59999999997 6999999 89999999999996 677799999987 689999999999999
Q ss_pred HHHHHHHcCC
Q 029412 142 RYWTESFAKT 151 (194)
Q Consensus 142 ~~~~~~~a~~ 151 (194)
+.||.+||+.
T Consensus 235 r~~t~k~A~~ 244 (323)
T 3ceg_A 235 RQATVKWAML 244 (323)
T ss_dssp HHHHHHHTTH
T ss_pred HHHHHHHhhH
Confidence 9999999985
No 43
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=4.2e-42 Score=262.66 Aligned_cols=131 Identities=27% Similarity=0.398 Sum_probs=119.2
Q ss_pred CchHHHHHHHHHHHHhcCCCCCeEEEecC-C--CceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceec
Q 029412 1 MIDFSRVQKELQECSKDIEASGIKVTPVS-D--NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWH 77 (194)
Q Consensus 1 m~~~~RL~~E~~~l~~~~~~~~i~v~~~~-~--~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 77 (194)
+++.+||++|+++|+++.++.|+++.+.+ + |++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||
T Consensus 20 ~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~H 99 (156)
T 2q0v_A 20 VPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEM 99 (156)
T ss_dssp CCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred chHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEccccc
Confidence 46889999999999998456899998853 3 59999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccc---ccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHC
Q 029412 78 PNISSQSGAI---CLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKD 133 (194)
Q Consensus 78 pnv~~~~G~i---cl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~ 133 (194)
|||+. +|+| |+++|. +|+|+++|++||.+|++||.+|++++|+|.+||++|++|
T Consensus 100 PNV~~-~G~icisCL~iL~-~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa~~y~~n 156 (156)
T 2q0v_A 100 SCVDN-CGRVIKNNLHILK-NWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVYSNN 156 (156)
T ss_dssp TTBCT-TSBBCGGGSHHHH-TCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTTCBC---
T ss_pred CCCcc-CCeEehhhccccc-CCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHHHHhhhC
Confidence 99995 7999 899997 599999999999999999999999999999999998875
No 44
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=7e-42 Score=256.84 Aligned_cols=128 Identities=23% Similarity=0.431 Sum_probs=115.4
Q ss_pred chHHHHHHHHHHHHhcCCCCCeEEEecC-C--CceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecc
Q 029412 2 IDFSRVQKELQECSKDIEASGIKVTPVS-D--NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHP 78 (194)
Q Consensus 2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~-~--~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 78 (194)
++.+||++|+++|+++.++.|+++.+.+ + |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||
T Consensus 6 ~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 85 (138)
T 1jat_B 6 PRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLP 85 (138)
T ss_dssp CHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCT
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcccccC
Confidence 4779999999999997446899998853 3 599999999999999999999999999999999999999999999999
Q ss_pred cccCCCccc--ccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHH
Q 029412 79 NISSQSGAI--CLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQY 130 (194)
Q Consensus 79 nv~~~~G~i--cl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~ 130 (194)
||+..+|.| |+++|. +|+|+++|++||.+|++||.+|++++|+|.+||.+|
T Consensus 86 nv~~~~G~i~~cL~~l~-~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~~~~~~y 138 (138)
T 1jat_B 86 CVNPTTGEVQTDFHTLR-DWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 138 (138)
T ss_dssp TBCTTTCBBCTTSHHHH-TCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTCBC
T ss_pred CEeCCCCEEeeecccCC-CCCCcCcHHHHHHHHHHHHcCCCCCCCCCcchhhcC
Confidence 999756999 999886 899999999999999999999999999999988654
No 45
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=1.3e-40 Score=245.98 Aligned_cols=116 Identities=28% Similarity=0.504 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccce-eccccc
Q 029412 3 DFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKV-WHPNIS 81 (194)
Q Consensus 3 ~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~Hpnv~ 81 (194)
+.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ |||||+
T Consensus 7 a~~RL~kEl~~l~~~-~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~ 85 (125)
T 2fo3_A 7 ANYRIQKELHNFLNN-PPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVY 85 (125)
T ss_dssp --CHHHHHHHHHHHS-CCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBC
T ss_pred HHHHHHHHHHHHHhC-CCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcCC
Confidence 679999999999999 568999999999999999999999999999999999999999999999999999996 999999
Q ss_pred CCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCC
Q 029412 82 SQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDD 120 (194)
Q Consensus 82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~ 120 (194)
.+|+||+++|.++|+|+++|++||.+|++||.+|+.+.
T Consensus 86 -~~G~iCl~iL~~~W~P~~~i~~vl~si~~ll~~p~~~~ 123 (125)
T 2fo3_A 86 -SNGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEKK 123 (125)
T ss_dssp -TTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC------
T ss_pred -CCCEEEchhcCCCCCCCCcHHHHHHHHHHHHhCccccc
Confidence 59999999999999999999999999999999998753
No 46
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=5.4e-41 Score=257.19 Aligned_cols=125 Identities=26% Similarity=0.410 Sum_probs=115.6
Q ss_pred chHHHHHHHHHHHHhcCCCCC-eEEEe-cCCC--ceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceec
Q 029412 2 IDFSRVQKELQECSKDIEASG-IKVTP-VSDN--LVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWH 77 (194)
Q Consensus 2 ~~~~RL~~E~~~l~~~~~~~~-i~v~~-~~~~--~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 77 (194)
++.+||++|+++|+++. +.| +.+.+ .++| +++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||
T Consensus 25 p~~~RL~kEl~~l~~~~-~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~H 103 (160)
T 2a4d_A 25 PRNFRLLEELEEGQKGV-GDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM 103 (160)
T ss_dssp HHHHHHHHHHHHHHSCC-TTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred hHHHHHHHHHHHHHhCC-CCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCcee
Confidence 57899999999999984 466 78877 4454 8999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccccccccc--CCCCcccCHHHHHHHHHHhhC-CCCCCCchhHHHH
Q 029412 78 PNISSQSGAICLDILK--DQWSPALTLKTALLSVQALLS-APAPDDPQDAVVA 127 (194)
Q Consensus 78 pnv~~~~G~icl~~l~--~~W~p~~~i~~il~~i~~ll~-~p~~~~p~n~~a~ 127 (194)
|||+..+|+||+++|. ++|+|+++|++||.+|++||. +||+++|+|.|||
T Consensus 104 PNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 156 (160)
T 2a4d_A 104 NGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 156 (160)
T ss_dssp TTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTC
T ss_pred CCEECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHHccCCCCCCCCChhhc
Confidence 9998668999999998 899999999999999999995 6999999999987
No 47
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=9.5e-40 Score=244.58 Aligned_cols=115 Identities=29% Similarity=0.509 Sum_probs=109.8
Q ss_pred chHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccce-ecccc
Q 029412 2 IDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKV-WHPNI 80 (194)
Q Consensus 2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~Hpnv 80 (194)
++.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ |||||
T Consensus 20 ~~~~RL~kEl~~l~~~-~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv 98 (136)
T 2h2y_A 20 NANYRIQKELNNFLKN-PPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHV 98 (136)
T ss_dssp SHHHHHHHHHHHHHHS-CCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTTB
T ss_pred HHHHHHHHHHHHHHhC-CCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCcC
Confidence 4679999999999999 568999999999999999999999999999999999999999999999999999996 99999
Q ss_pred cCCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCC
Q 029412 81 SSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAP 118 (194)
Q Consensus 81 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~ 118 (194)
+. +|+||+++|.++|+|+++|++||.+|++||.+|+.
T Consensus 99 ~~-~G~ICl~iL~~~WsP~~ti~~vL~si~sll~~p~~ 135 (136)
T 2h2y_A 99 YS-NGDICLSVLGDDYNPSLSISGLILSIISMLSSAKE 135 (136)
T ss_dssp CT-TCCBCCGGGTTTCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred CC-CCEEECccccCCCCCCCcHHHHHHHHHHHHhCcCc
Confidence 94 99999999999999999999999999999999974
No 48
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=3.6e-40 Score=255.13 Aligned_cols=125 Identities=26% Similarity=0.410 Sum_probs=115.1
Q ss_pred chHHHHHHHHHHHHhcCCCCC-eEEEe-cCCC--ceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceec
Q 029412 2 IDFSRVQKELQECSKDIEASG-IKVTP-VSDN--LVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWH 77 (194)
Q Consensus 2 ~~~~RL~~E~~~l~~~~~~~~-i~v~~-~~~~--~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 77 (194)
++.+||++|+++|+++. +.| +.+.+ .++| +++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||
T Consensus 35 p~~~RL~kEl~~l~~~~-~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~H 113 (170)
T 2hlw_A 35 PRNFRLLEELEEGQKGV-GDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM 113 (170)
T ss_dssp CHHHHHHHHHHHHHHCC-GGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCC
T ss_pred HHHHHHHHHHHHHHhCC-CCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEeccccc
Confidence 47899999999999984 466 67776 4454 9999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccccccccc--CCCCcccCHHHHHHHHHHhhC-CCCCCCchhHHHH
Q 029412 78 PNISSQSGAICLDILK--DQWSPALTLKTALLSVQALLS-APAPDDPQDAVVA 127 (194)
Q Consensus 78 pnv~~~~G~icl~~l~--~~W~p~~~i~~il~~i~~ll~-~p~~~~p~n~~a~ 127 (194)
|||+..+|.||+++|. ++|+|+++|++||.+|++||. .||+++|+|.|||
T Consensus 114 PNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 166 (170)
T 2hlw_A 114 NGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 166 (170)
T ss_dssp SSBCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSSCC
T ss_pred CCEeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHHccCCCCCCCCCcccc
Confidence 9998669999999997 899999999999999999997 4999999999886
No 49
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-38 Score=238.59 Aligned_cols=109 Identities=35% Similarity=0.681 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEE--ecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCccccccee--ccc
Q 029412 4 FSRVQKELQECSKDIEASGIKVT--PVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVW--HPN 79 (194)
Q Consensus 4 ~~RL~~E~~~l~~~~~~~~i~v~--~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~--Hpn 79 (194)
.+||++|+++|+++ ++.|+++. +.++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++| |||
T Consensus 24 ~~RL~kEl~~l~~~-~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPN 102 (136)
T 2a7l_A 24 QKRLQKELLALQND-PPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPH 102 (136)
T ss_dssp CHHHHHHHHHHHHS-CCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTT
T ss_pred HHHHHHHHHHHHhC-CCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCcc
Confidence 49999999999999 56899865 78899999999999999999999999999999999999999999999999 999
Q ss_pred ccCCCcccccccccCCCCcccCHHHHHHHHHHhhC
Q 029412 80 ISSQSGAICLDILKDQWSPALTLKTALLSVQALLS 114 (194)
Q Consensus 80 v~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~ 114 (194)
|+ .+|+||+++|.++|+|+++|++||.+|++||.
T Consensus 103 V~-~~G~ICL~iL~~~WsP~~ti~~vL~sI~slL~ 136 (136)
T 2a7l_A 103 VY-SNGHICLSILTEDWSPALSVQSVCLSIISMLS 136 (136)
T ss_dssp BC-TTCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred CC-CCCeEEchhcCCCCCCCCcHHHHHHHHHHHhC
Confidence 99 49999999999999999999999999999984
No 50
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=9.7e-37 Score=239.40 Aligned_cols=116 Identities=26% Similarity=0.559 Sum_probs=103.2
Q ss_pred chHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412 2 IDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS 81 (194)
Q Consensus 2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 81 (194)
++.+||++|+++|+++ ++.||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+ |||++
T Consensus 14 ~a~~RL~kEl~~l~~~-~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~~~~ 90 (187)
T 2f4w_A 14 TATQRLKQDYLRIKKD-PVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFK 90 (187)
T ss_dssp CHHHHHHHHHHHHHHS-CCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CSSBC
T ss_pred HHHHHHHHHHHHHHhC-CCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--Cceec
Confidence 3789999999999999 56899999999999999999999999999999999999999999999999999999 99998
Q ss_pred CCCcccccccc---cCCCCcccCHHHHHHHHHHhhCCCCCCCc
Q 029412 82 SQSGAICLDIL---KDQWSPALTLKTALLSVQALLSAPAPDDP 121 (194)
Q Consensus 82 ~~~G~icl~~l---~~~W~p~~~i~~il~~i~~ll~~p~~~~p 121 (194)
. +|+||+++| .++|+|+++|.+||.+|++||.+|+++..
T Consensus 91 ~-~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p~~g 132 (187)
T 2f4w_A 91 C-NTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLG 132 (187)
T ss_dssp T-TSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCTT
T ss_pred c-CCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCCCCc
Confidence 4 899999999 68999999999999999999999998753
No 51
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=100.00 E-value=1.1e-37 Score=244.48 Aligned_cols=138 Identities=19% Similarity=0.349 Sum_probs=120.6
Q ss_pred chHHHHHHHHHHHHhcCC--CCCeEEEecCCCceEEEEEEeCC-CCCCCCC-----------CeEEEEeeCCCCCCCCCC
Q 029412 2 IDFSRVQKELQECSKDIE--ASGIKVTPVSDNLVHLTGIIPGP-VGTPYEG-----------GTFRLDITLPDGYPFEPP 67 (194)
Q Consensus 2 ~~~~RL~~E~~~l~~~~~--~~~i~v~~~~~~~~~w~~~i~Gp-~~tpy~g-----------g~f~~~i~fp~~YP~~pP 67 (194)
++.+||++|+++|+++.+ +.++++.+.++|++.|+++|.|| ++|||+| |.|+++|.||++||++||
T Consensus 27 ~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~PP 106 (186)
T 1zuo_A 27 QASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPP 106 (186)
T ss_dssp HHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSCC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCCCC
Confidence 478999999999999842 57899999999999999999998 9999998 899999999999999999
Q ss_pred Ccccccceecc-cccCCCccccccccc-CCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHH
Q 029412 68 KMHFVTKVWHP-NISSQSGAICLDILK-DQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWT 145 (194)
Q Consensus 68 ~v~f~t~i~Hp-nv~~~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~ 145 (194)
+|+|.|++||| ||+ .+|.||+++|. ++|+|+++|++||.+|++||.+|+... .|..++.+|.+.++..+
T Consensus 107 ~V~f~tpi~hPnnV~-~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~~p~a~~--------~~~~~~~~Y~~~~~~~~ 177 (186)
T 1zuo_A 107 FVRVVLPVLSGGYVL-GGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARV--------QFGANKNQYNLARAQQS 177 (186)
T ss_dssp EEEEEESCEESTTBC-GGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCEE--------CTTCCTTCCCHHHHHHH
T ss_pred eEEEeCCccCCCccC-CCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHcCCChhH--------hhccCHHHHhHHHHHHH
Confidence 99999999999 699 59999999996 799999999999999999999987643 23345666666666655
Q ss_pred HHH
Q 029412 146 ESF 148 (194)
Q Consensus 146 ~~~ 148 (194)
.+.
T Consensus 178 ~~~ 180 (186)
T 1zuo_A 178 YNS 180 (186)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.93 E-value=3.6e-27 Score=178.64 Aligned_cols=113 Identities=18% Similarity=0.215 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCC----------eEEEEeeCCCCCCCCCCCccccc
Q 029412 4 FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGG----------TFRLDITLPDGYPFEPPKMHFVT 73 (194)
Q Consensus 4 ~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v~f~t 73 (194)
.+||++|++.|.+. +.+..+|++.|.+++.||++|+|+|| .|.++|.||.+||++||+|+|.+
T Consensus 34 ~~RL~eE~k~L~k~-------v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~ 106 (172)
T 2z6o_A 34 VQRLKEEYQSLIRY-------VENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPE 106 (172)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGG
T ss_pred HHHHHHHHHHHHHH-------hccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCC
Confidence 78999999999984 45667899999999999999999999 99999999999999999999999
Q ss_pred c-eecccccCCCcccccccc-cC---CCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHH
Q 029412 74 K-VWHPNISSQSGAICLDIL-KD---QWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLK 132 (194)
Q Consensus 74 ~-i~Hpnv~~~~G~icl~~l-~~---~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~ 132 (194)
. +||||||. +|+|||+++ +. .|+|.++|.++|.- ....++..|+..+...
T Consensus 107 ~~~~hpnmY~-~G~ICLdIL~kp~Ws~~~P~~~IahiL~l--------gl~pwla~eip~lv~~ 161 (172)
T 2z6o_A 107 LDGKTAKMYR-GGKICLTDHFKPLWARNVPKFGLAHLMAL--------GLGPWLAVEIPDLIQK 161 (172)
T ss_dssp GTTTCSSBCT-TSBBCCCTTHHHHHHHHTTSCCHHHHHHH--------THHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCC-CCcEechhhccccccccCCccCHHHHHhh--------ccCchhhhhhHHHHHc
Confidence 8 99999995 899999999 43 56699999999843 2334566666666543
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.80 E-value=2.2e-19 Score=137.02 Aligned_cols=113 Identities=23% Similarity=0.356 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHhcCCCCCeEE----EecCCCceEEEEEEeCCCCCCCCCCe---EEEEeeCCCCCCCCCCCcccccc--
Q 029412 4 FSRVQKELQECSKDIEASGIKV----TPVSDNLVHLTGIIPGPVGTPYEGGT---FRLDITLPDGYPFEPPKMHFVTK-- 74 (194)
Q Consensus 4 ~~RL~~E~~~l~~~~~~~~i~v----~~~~~~~~~w~~~i~Gp~~tpy~gg~---f~~~i~fp~~YP~~pP~v~f~t~-- 74 (194)
-+|..+|..++.+.- +.+.. ...++....+-+.+.|.-.++|+|+. |.+.|.||.+||++||.|.|.++
T Consensus 30 ~~~~~~dv~~~l~~y--p~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~ 107 (162)
T 3r3q_A 30 GRTTFHDSLALLDNF--HSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENF 107 (162)
T ss_dssp HHHHHHHHHHHHHHC--TTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGC
T ss_pred hhHHHHHHHHHHHhC--CCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCc
Confidence 367788888887752 34433 23456666677777776668999999 88999999999999999988651
Q ss_pred --------ee-cccccCCCcccccccccCCCCc-ccCHHHHHHHHHHhhCCCCCCC
Q 029412 75 --------VW-HPNISSQSGAICLDILKDQWSP-ALTLKTALLSVQALLSAPAPDD 120 (194)
Q Consensus 75 --------i~-Hpnv~~~~G~icl~~l~~~W~p-~~~i~~il~~i~~ll~~p~~~~ 120 (194)
|+ ||||| .+|+||+++| ++|+| +.++.++|.+|+++|.+|+++.
T Consensus 108 ~m~~~~~~I~~hpnVD-~~G~I~lpyL-~~W~p~~s~L~~ll~~l~~lf~ep~~d~ 161 (162)
T 3r3q_A 108 DMNTISSSLPIQEYID-SNGWIALPIL-HAWDPAAMNLIMVVQELMSLLHEPPQDQ 161 (162)
T ss_dssp CTTTSCTTSTHHHHBC-TTSBBCCGGG-GSCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred cccccccccCCCCCCC-CCCcEeCccc-ccCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence 77 99999 4999999999 56999 6799999999999999999975
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.70 E-value=1.4e-18 Score=128.75 Aligned_cols=86 Identities=20% Similarity=0.375 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCC----------eEEEEeeCCCCCCCCCCCccccc
Q 029412 4 FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGG----------TFRLDITLPDGYPFEPPKMHFVT 73 (194)
Q Consensus 4 ~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v~f~t 73 (194)
..||..||..|-+.. ..+.++-..|...+.|++||+|.|+ .|.+++.||.+||..||.|+|.+
T Consensus 36 ~~RlkeEy~alI~yv-------~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~ 108 (168)
T 3kpa_A 36 TARLKEEYASLITYV-------EHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPE 108 (168)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGG
T ss_pred HHHHHHHHHHHHHHH-------HhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeeccc
Confidence 479999999988651 1222333469999999999999999 99999999999999999999999
Q ss_pred c-eecccccCCCcccccccccCCCCccc
Q 029412 74 K-VWHPNISSQSGAICLDILKDQWSPAL 100 (194)
Q Consensus 74 ~-i~Hpnv~~~~G~icl~~l~~~W~p~~ 100 (194)
. .+|||++ .+|+|||+++ |+|.+
T Consensus 109 ldgkt~kmY-r~GkICLdIh---wkPlW 132 (168)
T 3kpa_A 109 LEGKTVKMY-RGGKICMTTH---FFPLW 132 (168)
T ss_dssp GTTTCSSEE-TTTEECCCTT---HHHHH
T ss_pred ccCcCcccc-CCCcEEeccc---cchhh
Confidence 5 8999999 5999999987 76654
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.48 E-value=3.8e-14 Score=106.26 Aligned_cols=101 Identities=27% Similarity=0.459 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhcCCCCCeEEEe-----cCCCceEEEEEEeCCCCCCCCCCeEEE--EeeCCCCCCCCCCCcccccc----
Q 029412 6 RVQKELQECSKDIEASGIKVTP-----VSDNLVHLTGIIPGPVGTPYEGGTFRL--DITLPDGYPFEPPKMHFVTK---- 74 (194)
Q Consensus 6 RL~~E~~~l~~~~~~~~i~v~~-----~~~~~~~w~~~i~Gp~~tpy~gg~f~~--~i~fp~~YP~~pP~v~f~t~---- 74 (194)
+..+|..++.+.- +.+.... ...+++.|.++|. .+|+|+.|.+ .|.||.+||++||.| |.++
T Consensus 24 ~t~~dv~~vl~~y--p~L~p~~~~y~G~~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m 96 (146)
T 3obq_A 24 LTVRETVNVITLY--KDLKPVLDSYGTGSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSM 96 (146)
T ss_dssp HHHHHHHHHHHHC--TTEEEEEEESSSTTCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTE
T ss_pred hhHHHHHHHHHhC--CCCceEeeeeeCChheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCC
Confidence 4456777766652 2333221 2468999999998 6799999985 899999999999999 6655
Q ss_pred --eecccccCCCcccccccccCCCCc-ccCHHHHHHHHHHhhCC
Q 029412 75 --VWHPNISSQSGAICLDILKDQWSP-ALTLKTALLSVQALLSA 115 (194)
Q Consensus 75 --i~Hpnv~~~~G~icl~~l~~~W~p-~~~i~~il~~i~~ll~~ 115 (194)
.+|||||. +|+||++.|.+ |++ ..++.+++..+++.|.+
T Consensus 97 ~I~~~~~Vd~-~G~i~lpyL~~-W~~~~snL~~ll~~l~~~F~~ 138 (146)
T 3obq_A 97 TIKTGKHVDA-NGKIYLPYLHE-WKHPQSDLLGLIQVMIVVFGD 138 (146)
T ss_dssp EECCBTTBCT-TCBBCCHHHHT-CCTTTCCHHHHHHHHHHHHHH
T ss_pred EECCCCCCCC-CCCEecccccc-cCCCCCCHHHHHHHHHHHHhh
Confidence 48999995 99999999955 987 78999999999998874
No 56
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=99.36 E-value=6e-13 Score=94.40 Aligned_cols=79 Identities=23% Similarity=0.298 Sum_probs=36.3
Q ss_pred CCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCCCCC-----chHHHHHHHHhcCC-ChhHHHHHHHHhCCCHHHHHH
Q 029412 116 PAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSL-----GVEEKVQKLVEMGF-PESQVRSTLEIVGGDENMALE 189 (194)
Q Consensus 116 p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~~~~-----~~~~~~~~~~~~g~-~~~~~~~al~~~~~~~~~~~e 189 (194)
.....|.+.++|++|+++++.|..+|+.|+.-||..... ..++.+++|.+||| ++..++.||+..+||.+.|+|
T Consensus 21 ~~~~~PQDA~VA~qy~~~~~~f~~TAr~WT~~~a~~~~~~~~e~~~~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe 100 (108)
T 2cwb_A 21 ETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSQWQPQLQQLRDMGIQDDELSLRALQATGGDIQAALE 100 (108)
T ss_dssp ------------------------------------------CCTTHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred cccCCchhHHHHHHHHhchhccccccccccccCcCCCCCCCcccchHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 344578999999999999999999999999777765432 34789999999999 568999999999999999999
Q ss_pred HhhcC
Q 029412 190 KLLSS 194 (194)
Q Consensus 190 ~l~~~ 194 (194)
.|++|
T Consensus 101 ~L~~~ 105 (108)
T 2cwb_A 101 LIFAG 105 (108)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 99975
No 57
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.69 E-value=2e-08 Score=61.41 Aligned_cols=39 Identities=23% Similarity=0.387 Sum_probs=37.1
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412 156 VEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS 194 (194)
Q Consensus 156 ~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~~ 194 (194)
.++.+++|++|||++..|+.||+..+|+.+.|+|.|++|
T Consensus 8 ~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~~g 46 (49)
T 1ify_A 8 YETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 378999999999999999999999999999999999986
No 58
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=98.67 E-value=2.9e-08 Score=58.93 Aligned_cols=39 Identities=33% Similarity=0.368 Sum_probs=37.1
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412 156 VEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS 194 (194)
Q Consensus 156 ~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~~ 194 (194)
+++.+++|++|||++..|+.||...+|+.+.|++.|++|
T Consensus 4 ~e~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 4 KSLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence 578999999999999999999999999999999999976
No 59
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=98.58 E-value=9.4e-08 Score=57.52 Aligned_cols=38 Identities=32% Similarity=0.493 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCC-ChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412 157 EEKVQKLVEMGF-PESQVRSTLEIVGGDENMALEKLLSS 194 (194)
Q Consensus 157 ~~~~~~~~~~g~-~~~~~~~al~~~~~~~~~~~e~l~~~ 194 (194)
++.+++|.+||| ++..++.||+..+|+.+.|+|.|++|
T Consensus 8 ~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 8 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 678999999999 56778999999999999999999987
No 60
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.54 E-value=1e-07 Score=62.91 Aligned_cols=39 Identities=44% Similarity=0.613 Sum_probs=37.1
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412 156 VEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS 194 (194)
Q Consensus 156 ~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~~ 194 (194)
.++.|++|++|||++..|+.||+..+|+.+.|+|.|++|
T Consensus 29 ~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~~ 67 (73)
T 1vg5_A 29 SEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQ 67 (73)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 378999999999999999999999999999999999975
No 61
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=98.54 E-value=2e-07 Score=57.58 Aligned_cols=39 Identities=36% Similarity=0.579 Sum_probs=36.8
Q ss_pred hHHHHHHHHhcCC-ChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412 156 VEEKVQKLVEMGF-PESQVRSTLEIVGGDENMALEKLLSS 194 (194)
Q Consensus 156 ~~~~~~~~~~~g~-~~~~~~~al~~~~~~~~~~~e~l~~~ 194 (194)
.++.+++|++||| ++..++.||+..+|+.+.|+|.|+++
T Consensus 12 ~~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 12 FQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 3689999999999 99999999999999999999999975
No 62
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.52 E-value=1.7e-08 Score=65.17 Aligned_cols=50 Identities=24% Similarity=0.370 Sum_probs=43.3
Q ss_pred HHHHHHHcCCCCCchHHHHHHHHhcCCChhHHHHHHHHhCC-CHHHHHHHhhcC
Q 029412 142 RYWTESFAKTSSLGVEEKVQKLVEMGFPESQVRSTLEIVGG-DENMALEKLLSS 194 (194)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~g~~~~~~~~al~~~~~-~~~~~~e~l~~~ 194 (194)
|.|+..|+.. .+++.+++|++|||++..|++||...+| +++.|++.|+++
T Consensus 8 r~~t~~ya~~---~~e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~ 58 (64)
T 2cpw_A 8 RNRQQRPGTI---KHGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSH 58 (64)
T ss_dssp CCSCCSSCSS---SCCCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSC
T ss_pred chhhhccccc---CCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence 4566677765 3478999999999999999999999999 999999999874
No 63
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=98.49 E-value=1.7e-07 Score=58.10 Aligned_cols=38 Identities=37% Similarity=0.585 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCC-ChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412 157 EEKVQKLVEMGF-PESQVRSTLEIVGGDENMALEKLLSS 194 (194)
Q Consensus 157 ~~~~~~~~~~g~-~~~~~~~al~~~~~~~~~~~e~l~~~ 194 (194)
++.+++|++||| ++..++.||+..+|+.+.|+|.|+++
T Consensus 12 ~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~ 50 (53)
T 2knz_A 12 QQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGS 50 (53)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 578999999999 99999999999999999999999874
No 64
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=98.42 E-value=3.2e-07 Score=57.86 Aligned_cols=38 Identities=32% Similarity=0.493 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCC-ChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412 157 EEKVQKLVEMGF-PESQVRSTLEIVGGDENMALEKLLSS 194 (194)
Q Consensus 157 ~~~~~~~~~~g~-~~~~~~~al~~~~~~~~~~~e~l~~~ 194 (194)
++.+++|.+||| ++..++.||+..+||.+.|+|.|++|
T Consensus 18 ~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 18 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 578999999999 57788999999999999999999976
No 65
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.40 E-value=3e-07 Score=61.98 Aligned_cols=38 Identities=29% Similarity=0.539 Sum_probs=36.5
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412 156 VEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLS 193 (194)
Q Consensus 156 ~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~ 193 (194)
+++.|++|++|||++..|+.||+..+|+.++|+|.|++
T Consensus 29 ~ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~s 66 (83)
T 1veg_A 29 SQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAH 66 (83)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 48999999999999999999999999999999999986
No 66
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.39 E-value=2.8e-07 Score=59.12 Aligned_cols=40 Identities=33% Similarity=0.438 Sum_probs=37.1
Q ss_pred chHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412 155 GVEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS 194 (194)
Q Consensus 155 ~~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~~ 194 (194)
.+++.+++|++|||++..|+.||...+|+.+.|++.|+++
T Consensus 8 ~~~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 8 VDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp SCHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 3588999999999999999999999999999999999863
No 67
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.34 E-value=6.7e-07 Score=59.05 Aligned_cols=38 Identities=26% Similarity=0.454 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCC-ChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412 157 EEKVQKLVEMGF-PESQVRSTLEIVGGDENMALEKLLSS 194 (194)
Q Consensus 157 ~~~~~~~~~~g~-~~~~~~~al~~~~~~~~~~~e~l~~~ 194 (194)
++.+++|.+||| ++..++.||+..+|+.+.|+|.|++|
T Consensus 30 e~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~~ 68 (74)
T 1vej_A 30 QQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGA 68 (74)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 689999999999 67888999999999999999999975
No 68
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.33 E-value=5.7e-07 Score=59.39 Aligned_cols=40 Identities=28% Similarity=0.439 Sum_probs=37.5
Q ss_pred chHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412 155 GVEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS 194 (194)
Q Consensus 155 ~~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~~ 194 (194)
.+++.+++|++|||++..|++||+..+|+.+.|++.|+++
T Consensus 28 ~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~~ 67 (73)
T 1wiv_A 28 IDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNN 67 (73)
T ss_dssp SCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 3589999999999999999999999999999999999874
No 69
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=5.6e-07 Score=57.75 Aligned_cols=39 Identities=26% Similarity=0.362 Sum_probs=36.8
Q ss_pred chHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412 155 GVEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLS 193 (194)
Q Consensus 155 ~~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~ 193 (194)
.+++.+++|++|||++..|++||+..+|+.+.|++.|++
T Consensus 8 ~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~~ 46 (63)
T 2dak_A 8 PPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFS 46 (63)
T ss_dssp CCHHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 458999999999999999999999999999999999986
No 70
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=98.32 E-value=9.5e-07 Score=51.24 Aligned_cols=36 Identities=33% Similarity=0.535 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhh
Q 029412 157 EEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLL 192 (194)
Q Consensus 157 ~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~ 192 (194)
++.+++|++|||++..|+.||...+|+.+.|++.|+
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 678999999999999999999999999999999885
No 71
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.28 E-value=1.1e-06 Score=54.66 Aligned_cols=39 Identities=31% Similarity=0.438 Sum_probs=34.4
Q ss_pred chHHHHHHHHhcCCCh-hHHHHHHHHhCCCHHHHHHHhhc
Q 029412 155 GVEEKVQKLVEMGFPE-SQVRSTLEIVGGDENMALEKLLS 193 (194)
Q Consensus 155 ~~~~~~~~~~~~g~~~-~~~~~al~~~~~~~~~~~e~l~~ 193 (194)
..++.+++|.+|||.. ..++.||+..+|+.+.|++.|++
T Consensus 8 ~~~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~ 47 (54)
T 2dah_A 8 HFQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQ 47 (54)
T ss_dssp SSHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3478999999999955 55799999999999999999985
No 72
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=98.26 E-value=4.1e-07 Score=54.94 Aligned_cols=39 Identities=36% Similarity=0.491 Sum_probs=36.5
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412 156 VEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS 194 (194)
Q Consensus 156 ~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~~ 194 (194)
+++.|+.|++|||++..|++||.+.+|+++.|++.|+++
T Consensus 4 e~eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~ 42 (47)
T 1dv0_A 4 EKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQ 42 (47)
T ss_dssp CHHHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTTSC
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 367899999999999999999999999999999999875
No 73
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.20 E-value=1.8e-06 Score=60.28 Aligned_cols=39 Identities=33% Similarity=0.495 Sum_probs=37.0
Q ss_pred hHHHHHHHHhc-CCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412 156 VEEKVQKLVEM-GFPESQVRSTLEIVGGDENMALEKLLSS 194 (194)
Q Consensus 156 ~~~~~~~~~~~-g~~~~~~~~al~~~~~~~~~~~e~l~~~ 194 (194)
.+++|++|++| ||++..|+.||.+.+||.+.|++.|++|
T Consensus 39 ~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg 78 (104)
T 1wj7_A 39 FEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEG 78 (104)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 37899999999 9999999999999999999999999976
No 74
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=3.1e-06 Score=50.98 Aligned_cols=38 Identities=26% Similarity=0.365 Sum_probs=35.5
Q ss_pred chHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412 155 GVEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLS 193 (194)
Q Consensus 155 ~~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~ 193 (194)
.+++.+++|++|||++..|++||...+ +.+.|++.|++
T Consensus 8 ~~~~~v~~L~~MGF~~~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 8 VNQQQLQQLMDMGFTREHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp SCHHHHHHHHHHHCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence 458999999999999999999999998 99999999986
No 75
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.14 E-value=2e-06 Score=55.35 Aligned_cols=39 Identities=23% Similarity=0.461 Sum_probs=36.2
Q ss_pred chHHHHHHHHhcCCChhHHHHHHHHh-CCCHHHHHHHhhc
Q 029412 155 GVEEKVQKLVEMGFPESQVRSTLEIV-GGDENMALEKLLS 193 (194)
Q Consensus 155 ~~~~~~~~~~~~g~~~~~~~~al~~~-~~~~~~~~e~l~~ 193 (194)
.+++.+++|++|||++..|++||... +|+++.|++.|++
T Consensus 8 ~~~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~ 47 (64)
T 1whc_A 8 AELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLME 47 (64)
T ss_dssp CCCCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 35789999999999999999999999 7999999999986
No 76
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=3.5e-06 Score=56.92 Aligned_cols=39 Identities=31% Similarity=0.471 Sum_probs=36.6
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412 156 VEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS 194 (194)
Q Consensus 156 ~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~~ 194 (194)
+++.+++|++|||++..|++||...+|+++.|++.|+++
T Consensus 29 ~e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 29 DEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 578999999999999999999999999999999999863
No 77
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.08 E-value=4.9e-06 Score=56.43 Aligned_cols=37 Identities=24% Similarity=0.455 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412 157 EEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLS 193 (194)
Q Consensus 157 ~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~ 193 (194)
++.+++|++|||++..|++||...+|+.+.|++.|++
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~ 58 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLE 58 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 6889999999999999999999999999999999986
No 78
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=3.7e-06 Score=55.62 Aligned_cols=39 Identities=31% Similarity=0.452 Sum_probs=36.1
Q ss_pred chHHHHHHHHhcCCChhHHHHHHHHhC-CCHHHHHHHhhc
Q 029412 155 GVEEKVQKLVEMGFPESQVRSTLEIVG-GDENMALEKLLS 193 (194)
Q Consensus 155 ~~~~~~~~~~~~g~~~~~~~~al~~~~-~~~~~~~e~l~~ 193 (194)
.+++.+++|++|||++..|++||...+ |+++.|++.|++
T Consensus 8 ~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~ 47 (74)
T 2dag_A 8 LDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMS 47 (74)
T ss_dssp SCHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 458999999999999999999999998 589999999986
No 79
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.02 E-value=3.6e-06 Score=54.11 Aligned_cols=39 Identities=26% Similarity=0.351 Sum_probs=35.6
Q ss_pred chHHHHHHHHhcCCChhHHHHHHHHhCC-CHHHHHHHhhc
Q 029412 155 GVEEKVQKLVEMGFPESQVRSTLEIVGG-DENMALEKLLS 193 (194)
Q Consensus 155 ~~~~~~~~~~~~g~~~~~~~~al~~~~~-~~~~~~e~l~~ 193 (194)
.+++.+++|++|||+++.|++||...++ +++.|++.|++
T Consensus 8 ~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~ 47 (64)
T 2crn_A 8 SSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHD 47 (64)
T ss_dssp CSCSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 4578899999999999999999999976 99999999985
No 80
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.92 E-value=1e-05 Score=50.77 Aligned_cols=37 Identities=22% Similarity=0.362 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412 157 EEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLS 193 (194)
Q Consensus 157 ~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~ 193 (194)
++.|+.|++|||.++.|++||++.+.+.++|++-|++
T Consensus 20 ~e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFS 56 (63)
T 1wgn_A 20 RQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFA 56 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 6789999999999999999999999999999999986
No 81
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=97.89 E-value=2e-05 Score=47.78 Aligned_cols=38 Identities=29% Similarity=0.432 Sum_probs=34.7
Q ss_pred chHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhh
Q 029412 155 GVEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLL 192 (194)
Q Consensus 155 ~~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~ 192 (194)
..++.|++|++|||++.+|+.||...+++.+.|+-.|+
T Consensus 10 ~~~~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniLl 47 (52)
T 2ooa_A 10 NVDAKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILR 47 (52)
T ss_dssp -CHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ChHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 34799999999999999999999999999999997775
No 82
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=97.89 E-value=1.1e-05 Score=54.60 Aligned_cols=38 Identities=32% Similarity=0.358 Sum_probs=35.6
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHhC-CCHHHHHHHhhc
Q 029412 156 VEEKVQKLVEMGFPESQVRSTLEIVG-GDENMALEKLLS 193 (194)
Q Consensus 156 ~~~~~~~~~~~g~~~~~~~~al~~~~-~~~~~~~e~l~~ 193 (194)
+++.+++|++|||++..|++||...+ |+++.|++.|++
T Consensus 29 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~ 67 (84)
T 1vek_A 29 NEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLS 67 (84)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 58999999999999999999999995 999999999986
No 83
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=97.79 E-value=2.7e-05 Score=59.37 Aligned_cols=73 Identities=15% Similarity=0.205 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHCHHHHHHHHHHHHHH--------H------------cC---------------CCCCc--hHHHHHHHH
Q 029412 122 QDAVVAQQYLKDHQTFLSTARYWTES--------F------------AK---------------TSSLG--VEEKVQKLV 164 (194)
Q Consensus 122 ~n~~a~~~~~~~~~~f~~~a~~~~~~--------~------------a~---------------~~~~~--~~~~~~~~~ 164 (194)
.|+...++..+|++.|.+...+-... + .. ..... +++.|+.|+
T Consensus 59 ~NPqL~qlI~qNqe~Fl~mLnep~~~~~~~m~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~i~~tpee~eaI~rL~ 138 (171)
T 2qsf_X 59 RYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLC 138 (171)
T ss_dssp HCTTHHHHHHHCHHHHHHHHHHCCC-------------------------------------EECCCCCHHHHHHHHHHH
T ss_pred hCHHHHHHHHHCHHHHHHHHhCcccchhhhhcccccccccccccccccccccccccCCCCCCcccCCCCccHHHHHHHHH
Confidence 48888999999999999987532100 0 00 01111 257999999
Q ss_pred hcCCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412 165 EMGFPESQVRSTLEIVGGDENMALEKLLSS 194 (194)
Q Consensus 165 ~~g~~~~~~~~al~~~~~~~~~~~e~l~~~ 194 (194)
+|||++..|+.|+.+++|+++.|+..|+++
T Consensus 139 ~mGF~r~~viqA~~ac~knee~Aan~L~~~ 168 (171)
T 2qsf_X 139 ELGFERDLVIQVYFACDKNEEAAANILFSD 168 (171)
T ss_dssp TTTCCHHHHHHHHHHTTTCHHHHHHHHTTC
T ss_pred HcCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 999999999999999999999999999874
No 84
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.78 E-value=5.5e-05 Score=46.09 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=35.1
Q ss_pred chHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhh
Q 029412 155 GVEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLL 192 (194)
Q Consensus 155 ~~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~ 192 (194)
..++.|.+|+++||++++|+.||...+++.+.|...|+
T Consensus 8 ~~e~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL~ 45 (53)
T 2d9s_A 8 QLSSEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILR 45 (53)
T ss_dssp CSHHHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHHH
Confidence 34788999999999999999999999999999998776
No 85
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.67 E-value=5.9e-05 Score=48.61 Aligned_cols=38 Identities=34% Similarity=0.385 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCChh-HHHHHHHHhCCCHHHHHHHhhcC
Q 029412 157 EEKVQKLVEMGFPES-QVRSTLEIVGGDENMALEKLLSS 194 (194)
Q Consensus 157 ~~~~~~~~~~g~~~~-~~~~al~~~~~~~~~~~e~l~~~ 194 (194)
.+.+++|.+|||..+ .++.||.+.+.+.+.|+|.|+++
T Consensus 20 ~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 20 SKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSS 58 (67)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 358999999998555 55999999999999999999874
No 86
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=97.66 E-value=5.2e-05 Score=55.04 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=37.5
Q ss_pred chHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412 155 GVEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS 194 (194)
Q Consensus 155 ~~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~~ 194 (194)
..++.+++|++|||++..|++||...+|+++.|++.|+++
T Consensus 77 ~~e~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~e~L~~~ 116 (126)
T 2lbc_A 77 PPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSH 116 (126)
T ss_dssp CCHHHHHHHHHHTSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4588999999999999999999999999999999999875
No 87
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=97.63 E-value=0.00013 Score=52.36 Aligned_cols=38 Identities=29% Similarity=0.481 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412 157 EEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS 194 (194)
Q Consensus 157 ~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~~ 194 (194)
.+.+.+|.+|||+...|++||...+.|.++|+|.|+++
T Consensus 77 ~~~v~~L~eMGF~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 77 LQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 46899999999999999999999999999999999863
No 88
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=97.54 E-value=0.0001 Score=45.00 Aligned_cols=38 Identities=18% Similarity=0.351 Sum_probs=35.2
Q ss_pred chHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhh
Q 029412 155 GVEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLL 192 (194)
Q Consensus 155 ~~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~ 192 (194)
+.++.|..|++|||++.+++.||...+.|.+.|..-|+
T Consensus 6 p~e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiLl 43 (56)
T 2juj_A 6 QLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILR 43 (56)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHHH
Confidence 45899999999999999999999999999999997775
No 89
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=97.42 E-value=9.1e-05 Score=63.14 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=37.8
Q ss_pred chHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412 155 GVEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS 194 (194)
Q Consensus 155 ~~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~~ 194 (194)
..++.|++|++|||++..|++||++.+|+.++|+|+|++|
T Consensus 167 ~~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~g 206 (368)
T 1oqy_A 167 EYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTG 206 (368)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTTS
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3588999999999999999999999999999999999986
No 90
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.33 E-value=0.00027 Score=43.44 Aligned_cols=37 Identities=22% Similarity=0.201 Sum_probs=33.6
Q ss_pred HHHHHHHHhcCC-ChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412 157 EEKVQKLVEMGF-PESQVRSTLEIVGGDENMALEKLLS 193 (194)
Q Consensus 157 ~~~~~~~~~~g~-~~~~~~~al~~~~~~~~~~~e~l~~ 193 (194)
...+++|.+||| ++..-+.+|+..+|+.+.|++.|++
T Consensus 10 a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~ 47 (54)
T 2cp8_A 10 AALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQ 47 (54)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 458889999999 8999999999999999999988874
No 91
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=97.31 E-value=8.2e-05 Score=63.43 Aligned_cols=72 Identities=25% Similarity=0.323 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHCHHHHHHHHHHHHHHHc-C-------------CC-----C--CchHHHHHHHHhcCCChhHHHHHHHHh
Q 029412 122 QDAVVAQQYLKDHQTFLSTARYWTESFA-K-------------TS-----S--LGVEEKVQKLVEMGFPESQVRSTLEIV 180 (194)
Q Consensus 122 ~n~~a~~~~~~~~~~f~~~a~~~~~~~a-~-------------~~-----~--~~~~~~~~~~~~~g~~~~~~~~al~~~ 180 (194)
.|++.++++++|.+.|.+...+.+..-+ . .. . ..+.+.|+.|++|||++..|+.||.++
T Consensus 270 ~nP~l~~~I~~n~~~Fl~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~t~ee~eaI~rL~~mGF~~~~a~~al~a~ 349 (368)
T 1oqy_A 270 ENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFAC 349 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHSCCCCSCSSCCCSSSSCCCSCCCTTCSSCCCCTTTHHHHHHHHHHTCCSHHHHHHTSSS
T ss_pred hCHHHHHHHHHCHHHHHHHHcCcccccccccccccccccccccCCccccccCCCcCHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 4899999999999999999865421100 0 00 1 124689999999999999999999999
Q ss_pred CCCHHHHHHHhhc
Q 029412 181 GGDENMALEKLLS 193 (194)
Q Consensus 181 ~~~~~~~~e~l~~ 193 (194)
+|+++.|++.|++
T Consensus 350 ~~n~e~A~~~L~~ 362 (368)
T 1oqy_A 350 EKNENLAANFLLS 362 (368)
T ss_dssp SSCSSHHHHHHHH
T ss_pred CCCHHHHHHHHhh
Confidence 9999999999986
No 92
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=97.26 E-value=0.00052 Score=40.32 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhh
Q 029412 157 EEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLL 192 (194)
Q Consensus 157 ~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~ 192 (194)
++.|..|+.|||++++|+.||...+.+.+.|..-|+
T Consensus 5 e~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ 40 (46)
T 2oo9_A 5 SSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILR 40 (46)
T ss_dssp HHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHH
Confidence 788999999999999999999999999999998775
No 93
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=96.54 E-value=0.003 Score=45.18 Aligned_cols=37 Identities=22% Similarity=0.401 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412 157 EEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLS 193 (194)
Q Consensus 157 ~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~ 193 (194)
.+.+++|++|||++..|++||...+.+.+.|++.|++
T Consensus 9 ~~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL~~ 45 (118)
T 4ae4_A 9 RQCVETVVNMGYSYECVLRAMKAAGANIEQILDYLFA 45 (118)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 5789999999999999999999999999999999874
No 94
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.39 E-value=0.012 Score=42.05 Aligned_cols=68 Identities=21% Similarity=0.215 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCccccc
Q 029412 3 DFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVT 73 (194)
Q Consensus 3 ~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 73 (194)
...+...|+..|..--+ ..+.+ .++....+.+.|....+..-..-.+.+.+.||++||..||.|.+.+
T Consensus 11 ~~e~q~~EleaL~sIy~-d~~~~--~~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 11 YGEEQRNELEALESIYP-DSFTV--LSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp HHHHHHHHHHHHHHHCS-SSEEE--CCSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred hHHHHHHHHHHHHHHcc-CceEE--ccCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence 34677889988887532 33443 2333456666665322222234478899999999999999987644
No 95
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=94.77 E-value=0.035 Score=33.75 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhCC-CHHHHHHHhh
Q 029412 158 EKVQKLVEMGFPESQVRSTLEIVGG-DENMALEKLL 192 (194)
Q Consensus 158 ~~~~~~~~~g~~~~~~~~al~~~~~-~~~~~~e~l~ 192 (194)
+-++.|++|||+++-|.+||+.-|. ....|.|-|.
T Consensus 11 qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~ 46 (54)
T 2cos_A 11 QMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYIS 46 (54)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4489999999999999999999877 4556667663
No 96
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=94.72 E-value=0.18 Score=35.79 Aligned_cols=68 Identities=13% Similarity=0.154 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhcCCCCCeEEEecC--CCceEEEEEEeCCCCCCC--CCCeEEEEeeCCCCCCCCCCCcccccc
Q 029412 6 RVQKELQECSKDIEASGIKVTPVS--DNLVHLTGIIPGPVGTPY--EGGTFRLDITLPDGYPFEPPKMHFVTK 74 (194)
Q Consensus 6 RL~~E~~~l~~~~~~~~i~v~~~~--~~~~~w~~~i~Gp~~tpy--~gg~f~~~i~fp~~YP~~pP~v~f~t~ 74 (194)
+...|+..|+.--+ ..+.+.... .....+.+.|..+.+..- ..-.+.+.+.||++||..+|.|...+.
T Consensus 12 ~~~~EleaL~SIY~-de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~ 83 (128)
T 2day_A 12 VLPSEVEVLESIYL-DELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP 83 (128)
T ss_dssp HHHHHHHHHHHHST-TTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred HHHHHHHHHHHHCC-CceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcC
Confidence 56788888887532 345443221 234556666653322111 124788999999999999999987763
No 97
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.67 E-value=0.39 Score=34.08 Aligned_cols=67 Identities=16% Similarity=0.042 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCC-CCCeEEE-ecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCccccc
Q 029412 6 RVQKELQECSKDIE-ASGIKVT-PVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVT 73 (194)
Q Consensus 6 RL~~E~~~l~~~~~-~~~i~v~-~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 73 (194)
....|+..|+.--+ +..+.+. ....+...+.+.|...... -..-.+.+.+.+|++||..||.|...+
T Consensus 11 ~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~~~~~-~~~~~~~L~~~~p~~YP~~~P~i~l~~ 79 (128)
T 2ebk_A 11 PVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGFM-DADIPLELVFHLPVNYPSCLPGISINS 79 (128)
T ss_dssp HHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEECCTTT-TCCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred HHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecCCCCC-CCCeEEEEEEECCCCCCCCCCeEEEEh
Confidence 45678888776422 1134322 1122345777777633211 012478899999999999999987653
No 98
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=94.59 E-value=0.12 Score=37.19 Aligned_cols=66 Identities=11% Similarity=0.132 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEecC-------CCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCccccc
Q 029412 5 SRVQKELQECSKDIEASGIKVTPVS-------DNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVT 73 (194)
Q Consensus 5 ~RL~~E~~~l~~~~~~~~i~v~~~~-------~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 73 (194)
.+...|+..|+.--+ ..+.+. .. .....+.+.|.+..+ .-..-.+.+.+.+|++||..||.|.+.+
T Consensus 13 e~q~~EleaL~SIY~-d~~~~~-~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~ 85 (138)
T 2yz0_A 13 EIQCNELEAIRSIYM-DDFTDL-TKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKN 85 (138)
T ss_dssp HHHHHHHHHHHTTSS-SSEECC-STTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred HHHHHHHHHHHHHCh-hhheec-ccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEec
Confidence 345677777776422 223221 11 124567777764322 1123478899999999999999988754
No 99
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=93.83 E-value=0.52 Score=36.08 Aligned_cols=84 Identities=20% Similarity=0.318 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccccCCC
Q 029412 5 SRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQS 84 (194)
Q Consensus 5 ~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~~ 84 (194)
.+|.+|+.++-=+ .+...+.++....+.+.... |....++|.++.+||.+||.+...-|. |.
T Consensus 4 ~~li~Ei~~iGW~------~l~~id~~~~~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~DlP~--~~----- 65 (186)
T 3zqs_A 4 SSLIEEIGTLGWD------KLVYADTCFSTIKLKAEDAS-----GREHLITLKLKAKYPAESPDYFVDFPV--PF----- 65 (186)
T ss_dssp CSHHHHHHHHCGG------GEEEECTTSSEEEEEEECTT-----SCEEEEEEECCTTTTTSCCEEECCCSS--CC-----
T ss_pred HHHHHHHHHhCCc------eeeeecCCccEEEEEEEeCC-----CCeEEEEEEECCCCCCCCCeeEEcCCC--Cc-----
Confidence 3577777776433 12223567888999998543 578999999999999999987655433 10
Q ss_pred cccccccccCCCCcccCHHHHHHHHHHhhC
Q 029412 85 GAICLDILKDQWSPALTLKTALLSVQALLS 114 (194)
Q Consensus 85 G~icl~~l~~~W~p~~~i~~il~~i~~ll~ 114 (194)
. -.|+|..++.+++...+..+.
T Consensus 66 ---~-----~~w~~~ssL~~v~~qF~~~Le 87 (186)
T 3zqs_A 66 ---C-----ASWTPQSSLISIYSQFLAAIE 87 (186)
T ss_dssp ---C-----CCCCTTCCHHHHHHHHHHHHH
T ss_pred ---c-----cccCCCccHHHHHHHHHHHHH
Confidence 1 258888888888877766543
No 100
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=93.50 E-value=0.16 Score=32.10 Aligned_cols=37 Identities=30% Similarity=0.328 Sum_probs=32.8
Q ss_pred hHHHHHHHHh-cCCChhHHHHHHHHhCCCHHHHHHHhh
Q 029412 156 VEEKVQKLVE-MGFPESQVRSTLEIVGGDENMALEKLL 192 (194)
Q Consensus 156 ~~~~~~~~~~-~g~~~~~~~~al~~~~~~~~~~~e~l~ 192 (194)
..+.|..|.+ -|....+|.+||.+.++|.++|.+.|.
T Consensus 9 t~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr 46 (64)
T 2cp9_A 9 SKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLH 46 (64)
T ss_dssp CCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3577888877 499999999999999999999999986
No 101
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=93.48 E-value=0.46 Score=33.95 Aligned_cols=70 Identities=14% Similarity=0.049 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHhcCCCCCeEEEecCC-----CceEEEEEEeCCCCC-CCCCCeEEEEeeCCCCCCCCCCCccccc
Q 029412 3 DFSRVQKELQECSKDIEASGIKVTPVSD-----NLVHLTGIIPGPVGT-PYEGGTFRLDITLPDGYPFEPPKMHFVT 73 (194)
Q Consensus 3 ~~~RL~~E~~~l~~~~~~~~i~v~~~~~-----~~~~w~~~i~Gp~~t-py~gg~f~~~i~fp~~YP~~pP~v~f~t 73 (194)
...+...|+..|+.--+ ..+.+..... ......+.|.....+ .-..-.+.+.|.||++||..||.|.+..
T Consensus 11 ~~e~q~~EleaL~SIY~-d~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 86 (137)
T 1ukx_A 11 YSQRQDHELQALEAIYG-SDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKN 86 (137)
T ss_dssp HHHHHHHHHHHHHHHTS-SSEEECCCCCSSSCCCCCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEE
T ss_pred hHHHHHHHHHHHHHHCc-ccceeccCcccCccCCCcEEEEEEecCCcCCcccceEEEEEEECCCCCCCCCCcEEEec
Confidence 34567788888887532 3343321111 134566666521111 0012468899999999999999997743
No 102
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=92.75 E-value=0.15 Score=29.97 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=30.7
Q ss_pred hHHHHHHHHhc-CCCh-hHHHHHHHHhCCCHHHHHHHh
Q 029412 156 VEEKVQKLVEM-GFPE-SQVRSTLEIVGGDENMALEKL 191 (194)
Q Consensus 156 ~~~~~~~~~~~-g~~~-~~~~~al~~~~~~~~~~~e~l 191 (194)
.++.+.+++++ |.+. ..|+.-|+.+|||.+.|+-..
T Consensus 5 ~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f 42 (45)
T 3e21_A 5 REMILADFQACTGIENIDEAITLLEQNNWDLVAAINGV 42 (45)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 37888888886 8786 999999999999999998543
No 103
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=92.06 E-value=0.28 Score=28.39 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=30.8
Q ss_pred HHHHHHHHhc-CCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412 157 EEKVQKLVEM-GFPESQVRSTLEIVGGDENMALEKLLS 193 (194)
Q Consensus 157 ~~~~~~~~~~-g~~~~~~~~al~~~~~~~~~~~e~l~~ 193 (194)
++.+++++.. |.+...|+..|+..+|+.+.|+...+.
T Consensus 6 ~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~ 43 (46)
T 1v92_A 6 QDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYE 43 (46)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 5677777764 889999999999999999999966543
No 104
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=91.74 E-value=0.73 Score=33.93 Aligned_cols=23 Identities=22% Similarity=0.532 Sum_probs=20.5
Q ss_pred eEEEEeeCCCCCCCCCCCccccc
Q 029412 51 TFRLDITLPDGYPFEPPKMHFVT 73 (194)
Q Consensus 51 ~f~~~i~fp~~YP~~pP~v~f~t 73 (194)
.+.++|.+|.+||..+|.|...+
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~ 98 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRS 98 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEEC
T ss_pred eEEEEEEcCCCCCCCCCcEEEEe
Confidence 79999999999999999987554
No 105
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=90.07 E-value=0.59 Score=28.92 Aligned_cols=39 Identities=28% Similarity=0.495 Sum_probs=35.1
Q ss_pred chHHHHHHHHhc--CCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412 155 GVEEKVQKLVEM--GFPESQVRSTLEIVGGDENMALEKLLS 193 (194)
Q Consensus 155 ~~~~~~~~~~~~--g~~~~~~~~al~~~~~~~~~~~e~l~~ 193 (194)
..++.++.|.+| .++...+..+|++++++.+.|.+.|+.
T Consensus 8 ~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 8 CSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp SCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 348899999997 889999999999999999999999874
No 106
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.91 E-value=0.59 Score=29.13 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=31.7
Q ss_pred hHHHHHHHHh-cCCChhHHHHHHHHhCCCHHHHHHHhh
Q 029412 156 VEEKVQKLVE-MGFPESQVRSTLEIVGGDENMALEKLL 192 (194)
Q Consensus 156 ~~~~~~~~~~-~g~~~~~~~~al~~~~~~~~~~~e~l~ 192 (194)
.++.+++++. -|-+...|+..|+..+|+.+.|+...+
T Consensus 15 ~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff 52 (62)
T 2dal_A 15 LKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFL 52 (62)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3678888887 489999999999999999999996554
No 107
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.09 E-value=0.74 Score=29.19 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=30.7
Q ss_pred HHHHHHHHhc-C-CChhHHHHHHHHhCCCHHHHHHHhh
Q 029412 157 EEKVQKLVEM-G-FPESQVRSTLEIVGGDENMALEKLL 192 (194)
Q Consensus 157 ~~~~~~~~~~-g-~~~~~~~~al~~~~~~~~~~~e~l~ 192 (194)
++++++++.. | -+...|+..|+..+|+.+.|+...+
T Consensus 19 ~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff 56 (67)
T 2dam_A 19 TEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRL 56 (67)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5778888775 6 7899999999999999999996654
No 108
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=88.45 E-value=0.23 Score=36.47 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.1
Q ss_pred eEEEEeeCCCCCCCCCCCccccc
Q 029412 51 TFRLDITLPDGYPFEPPKMHFVT 73 (194)
Q Consensus 51 ~f~~~i~fp~~YP~~pP~v~f~t 73 (194)
.+.+.+.+|.+||..||.|....
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~~ 96 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVRS 96 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEEC
T ss_pred eEEEEEECCCCCCCCCCeEEEEc
Confidence 58899999999999999997654
No 109
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.56 E-value=1.4 Score=27.75 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=30.4
Q ss_pred HHHHHHHhc-CCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412 158 EKVQKLVEM-GFPESQVRSTLEIVGGDENMALEKLLS 193 (194)
Q Consensus 158 ~~~~~~~~~-g~~~~~~~~al~~~~~~~~~~~e~l~~ 193 (194)
+.+++++.. |-+...|+..|+..+|+.+.|+...+.
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~ 55 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQ 55 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 567777764 889999999999999999999976553
No 110
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=85.11 E-value=1.9 Score=40.36 Aligned_cols=39 Identities=26% Similarity=0.362 Sum_probs=36.1
Q ss_pred chHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412 155 GVEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLS 193 (194)
Q Consensus 155 ~~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~ 193 (194)
.+++.++.+.+|||+...|++||++.+.+.++|++.|++
T Consensus 719 ~~~e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs 757 (854)
T 3ihp_A 719 PPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFS 757 (854)
T ss_dssp CCHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHhhcCcHHHHHHhhhc
Confidence 357899999999999999999999999999999998875
No 111
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=83.26 E-value=3.5 Score=24.34 Aligned_cols=38 Identities=29% Similarity=0.287 Sum_probs=33.3
Q ss_pred hHHHHHHHHh--cCCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412 156 VEEKVQKLVE--MGFPESQVRSTLEIVGGDENMALEKLLS 193 (194)
Q Consensus 156 ~~~~~~~~~~--~g~~~~~~~~al~~~~~~~~~~~e~l~~ 193 (194)
+++.+.+... .|..+.-.+..|..-|.|.+.|+-.|+|
T Consensus 9 Pe~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLs 48 (53)
T 2qho_B 9 PEELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLS 48 (53)
T ss_dssp CHHHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC
T ss_pred cHHHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhc
Confidence 4777777754 6999999999999999999999998886
No 112
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.06 E-value=3.1 Score=26.33 Aligned_cols=38 Identities=13% Similarity=0.301 Sum_probs=33.8
Q ss_pred hHHHHHHHHhc--CCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412 156 VEEKVQKLVEM--GFPESQVRSTLEIVGGDENMALEKLLS 193 (194)
Q Consensus 156 ~~~~~~~~~~~--g~~~~~~~~al~~~~~~~~~~~e~l~~ 193 (194)
.++.++.|.+| ..+...+...|.+++++.+.|++.|+.
T Consensus 18 ~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ 57 (67)
T 2dhy_A 18 FNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQ 57 (67)
T ss_dssp SHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 46888999987 788999999999999999999999874
No 113
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=82.14 E-value=2 Score=29.55 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=32.0
Q ss_pred chHHHHHHHHh-cCCChhHHHHHHHHhCCCHHHHHHHh
Q 029412 155 GVEEKVQKLVE-MGFPESQVRSTLEIVGGDENMALEKL 191 (194)
Q Consensus 155 ~~~~~~~~~~~-~g~~~~~~~~al~~~~~~~~~~~e~l 191 (194)
..++.++.+++ .|-++..|+.||+++++|.-.|.-+|
T Consensus 64 i~~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 64 IPEDDIELVMNQTGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp CCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 34777888876 69999999999999999999998665
No 114
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=81.50 E-value=2.7 Score=24.89 Aligned_cols=37 Identities=24% Similarity=0.370 Sum_probs=33.0
Q ss_pred HHHHHHHHhc--CCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412 157 EEKVQKLVEM--GFPESQVRSTLEIVGGDENMALEKLLS 193 (194)
Q Consensus 157 ~~~~~~~~~~--g~~~~~~~~al~~~~~~~~~~~e~l~~ 193 (194)
++.++.|.+| ..+...+.-.|+..++|.++|+..|+.
T Consensus 5 e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~ 43 (49)
T 1otr_A 5 ESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLK 43 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 6788889897 889999999999999999999988764
No 115
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=77.19 E-value=9.5 Score=28.25 Aligned_cols=35 Identities=40% Similarity=0.469 Sum_probs=29.8
Q ss_pred HHHHHHHHhcC-CChhHHHHHHHHhCCCHHHHHHHh
Q 029412 157 EEKVQKLVEMG-FPESQVRSTLEIVGGDENMALEKL 191 (194)
Q Consensus 157 ~~~~~~~~~~g-~~~~~~~~al~~~~~~~~~~~e~l 191 (194)
..++..|.+.| |++.+++.||..++.|++.|+-.|
T Consensus 103 ~~K~~eL~s~G~~~~~~~~~aL~~~~Gdv~~Al~eL 138 (162)
T 4dbg_B 103 RRKVQELQSLGFGPEEGSLQALFQHGGDVSRALTEL 138 (162)
T ss_dssp HHHHHHHHHTTCCGGGTHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHcCCcHHHHHHHH
Confidence 46888899998 677889999999999999998444
No 116
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=69.55 E-value=6.7 Score=23.43 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCChhHH--HHHHHHhCCCHHHHHHHhh
Q 029412 157 EEKVQKLVEMGFPESQV--RSTLEIVGGDENMALEKLL 192 (194)
Q Consensus 157 ~~~~~~~~~~g~~~~~~--~~al~~~~~~~~~~~e~l~ 192 (194)
.+-++++..|||+.+-. .+.|...+.|...|++.|-
T Consensus 11 ~~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 11 IESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp HHHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHhh
Confidence 45677778999999887 5899999999999998774
No 117
>3u3c_B Paxillin LD2 peptide; 4-helix bundle, focal adhesion, tyrosine kinase, transferase-signaling protein complex; 3.70A {Homo sapiens}
Probab=66.08 E-value=3.4 Score=20.36 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=17.0
Q ss_pred chHHHHHHHHHHHHhcCCCCCe
Q 029412 2 IDFSRVQKELQECSKDIEASGI 23 (194)
Q Consensus 2 ~~~~RL~~E~~~l~~~~~~~~i 23 (194)
+.+.||.-|+...+.+ |++|.
T Consensus 5 seldrlllelnavqhn-ppsg~ 25 (26)
T 3u3c_B 5 SELDRLLLELNAVQHN-PPSGX 25 (26)
T ss_pred HHHHHHHHHHhhhccC-CCCCC
Confidence 5678999999999999 55663
No 118
>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}
Probab=58.33 E-value=26 Score=21.80 Aligned_cols=37 Identities=27% Similarity=0.265 Sum_probs=30.4
Q ss_pred hHHHHHHHHh-cCCChhHHHHHHHHhCCCHHHHH---HHhh
Q 029412 156 VEEKVQKLVE-MGFPESQVRSTLEIVGGDENMAL---EKLL 192 (194)
Q Consensus 156 ~~~~~~~~~~-~g~~~~~~~~al~~~~~~~~~~~---e~l~ 192 (194)
++..+..++. -|-+..-|+..|+-.|||...|+ |+|+
T Consensus 17 mdavls~fvrstgaepgLaRDlleGKnWDl~AAL~D~eqLr 57 (73)
T 2l2d_A 17 MDAVLSDFVRSTGAEPGLARDLLEGKNWDLTAALSDYEQLR 57 (73)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcchhHHhhccCCccHhHHhhhHHHHH
Confidence 4566666654 79999999999999999999998 7775
No 119
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=55.58 E-value=26 Score=21.27 Aligned_cols=33 Identities=15% Similarity=0.063 Sum_probs=26.6
Q ss_pred HHHHHHHh-cCCChhHHHHHHHHhCCCHHHHHHH
Q 029412 158 EKVQKLVE-MGFPESQVRSTLEIVGGDENMALEK 190 (194)
Q Consensus 158 ~~~~~~~~-~g~~~~~~~~al~~~~~~~~~~~e~ 190 (194)
+.+..+.. =|....=+.+.|++++||-+.|...
T Consensus 9 ~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~ 42 (59)
T 1oai_A 9 EMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQA 42 (59)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 44555544 4999999999999999999999843
No 120
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=52.15 E-value=23 Score=21.45 Aligned_cols=33 Identities=15% Similarity=0.019 Sum_probs=26.3
Q ss_pred HHHHHHHh-cCCChhHHHHHHHHhCCCHHHHHHH
Q 029412 158 EKVQKLVE-MGFPESQVRSTLEIVGGDENMALEK 190 (194)
Q Consensus 158 ~~~~~~~~-~g~~~~~~~~al~~~~~~~~~~~e~ 190 (194)
+.+..+.. =|...+=+.+.|++++||-+.|...
T Consensus 8 ~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~ 41 (57)
T 2jp7_A 8 ELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKG 41 (57)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 44555544 5999999999999999999999843
No 121
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=44.98 E-value=51 Score=20.08 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=21.7
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHh
Q 029412 157 EEKVQKLVEMGFPESQVRSTLEIV 180 (194)
Q Consensus 157 ~~~~~~~~~~g~~~~~~~~al~~~ 180 (194)
++-++-|+..||.+.+|.+++..+
T Consensus 18 ~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 18 EEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 678889999999999999999887
No 122
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=43.88 E-value=44 Score=22.83 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=29.3
Q ss_pred HHHH-HhcCCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412 160 VQKL-VEMGFPESQVRSTLEIVGGDENMALEKLLSS 194 (194)
Q Consensus 160 ~~~~-~~~g~~~~~~~~al~~~~~~~~~~~e~l~~~ 194 (194)
+..+ .+...+..++.+||-....+..+|...|++|
T Consensus 17 i~~lMeef~~DL~sVTqAlLK~SGel~at~~fL~~~ 52 (111)
T 3k6g_A 17 IRQLMEKFNLDLSTVTQAFLKNSGELEATSAFLASG 52 (111)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhhhHHHHHHHHHHccccHHHHHHHHhCC
Confidence 3444 3578999999999999999999999988875
No 123
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=36.13 E-value=63 Score=24.18 Aligned_cols=46 Identities=17% Similarity=0.186 Sum_probs=33.4
Q ss_pred CCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCccccccee
Q 029412 29 SDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVW 76 (194)
Q Consensus 29 ~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 76 (194)
++..+.|.+.+.|+.+.-...-+=++...+.+.||. |...+..+.|
T Consensus 29 ~~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~n--p~Rvv~~PPF 74 (175)
T 3rls_A 29 AEHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPN--PVRSIEAPPF 74 (175)
T ss_dssp TTCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSS--CEEEECSSSE
T ss_pred CCCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCC--CcEEEeCCCC
Confidence 346789999999987655545577788899999975 6555555443
No 124
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=33.39 E-value=39 Score=31.53 Aligned_cols=37 Identities=30% Similarity=0.500 Sum_probs=29.8
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHhCCC-HHHHHHHhh
Q 029412 156 VEEKVQKLVEMGFPESQVRSTLEIVGGD-ENMALEKLL 192 (194)
Q Consensus 156 ~~~~~~~~~~~g~~~~~~~~al~~~~~~-~~~~~e~l~ 192 (194)
+++.++.|.+|||.+..+.+|+...+.+ .+.|.+-|+
T Consensus 652 d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~ 689 (854)
T 3ihp_A 652 DESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVM 689 (854)
T ss_dssp -CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHh
Confidence 4788999999999999999999998665 666666553
No 125
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=31.13 E-value=26 Score=26.75 Aligned_cols=25 Identities=20% Similarity=0.482 Sum_probs=22.3
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhC
Q 029412 157 EEKVQKLVEMGFPESQVRSTLEIVG 181 (194)
Q Consensus 157 ~~~~~~~~~~g~~~~~~~~al~~~~ 181 (194)
++-++-|+..||.+.+|.+|+..+.
T Consensus 161 ~ea~~AL~~LGy~~~ea~~av~~~~ 185 (203)
T 1cuk_A 161 QEAVARLVALGYKPQEASRMVSKIA 185 (203)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 6788889999999999999999883
No 126
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=30.03 E-value=1.5e+02 Score=21.24 Aligned_cols=48 Identities=17% Similarity=0.102 Sum_probs=34.1
Q ss_pred HHHHHHHHcCCCCCchHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHH
Q 029412 141 ARYWTESFAKTSSLGVEEKVQKLVEMGFPESQVRSTLEIVGGDENMALE 189 (194)
Q Consensus 141 a~~~~~~~a~~~~~~~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e 189 (194)
|+.|+...... .-++-...+.|...|++...+..||.+..-++.+++.
T Consensus 70 A~~~v~~~~~~-~~G~~~I~~eL~~KGI~~~~I~~al~~~~~de~e~a~ 117 (162)
T 3dfg_A 70 AASVVRNRASS-GYGPLHIRAELGTHGLDSDAVSAAMATFEGDWTENAL 117 (162)
T ss_dssp HHHHHHHHHTT-TCCHHHHHHHHHHTTCCHHHHHHHHTTCCSCHHHHHH
T ss_pred HHHHHHHHHHc-cccHHHHHHHHHHcCCCHHHHHHHHHhCcHhHHHHHH
Confidence 45566655442 3456788889999999999999999987655554443
No 127
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=29.35 E-value=31 Score=20.70 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=24.5
Q ss_pred HHHHHHHHhc--CCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412 157 EEKVQKLVEM--GFPESQVRSTLEIVGGDENMALEKLLS 193 (194)
Q Consensus 157 ~~~~~~~~~~--g~~~~~~~~al~~~~~~~~~~~e~l~~ 193 (194)
.+.++.|.+| .+|+.-....|..+++..+.++.+|++
T Consensus 13 ~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 13 KDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4566777776 788888888888888888888877764
No 128
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.98 E-value=99 Score=18.69 Aligned_cols=38 Identities=16% Similarity=0.323 Sum_probs=30.8
Q ss_pred hHHHHHHHHhc--CCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412 156 VEEKVQKLVEM--GFPESQVRSTLEIVGGDENMALEKLLSS 194 (194)
Q Consensus 156 ~~~~~~~~~~~--g~~~~~~~~al~~~~~~~~~~~e~l~~~ 194 (194)
.+.-++.+.+| ..+....+.-|+..+ +.+..+|.+++|
T Consensus 13 ~~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeG 52 (58)
T 2ejs_A 13 LNAMAHQIQEMFPQVPYHLVLQDLQLTR-SVEITTDNILEG 52 (58)
T ss_dssp HHHHHHHHHHHCCSSCHHHHHHHHHHHC-SHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHhc
Confidence 35667777665 888899999998878 999999999876
No 129
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=27.74 E-value=1.2e+02 Score=19.16 Aligned_cols=38 Identities=13% Similarity=0.273 Sum_probs=31.4
Q ss_pred HHHHHHHHhc--CCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412 157 EEKVQKLVEM--GFPESQVRSTLEIVGGDENMALEKLLSS 194 (194)
Q Consensus 157 ~~~~~~~~~~--g~~~~~~~~al~~~~~~~~~~~e~l~~~ 194 (194)
++.|.++.+. .+..--+.+.|+..+-+.+.++..|+.+
T Consensus 14 ~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~ 53 (71)
T 2di0_A 14 DSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEE 53 (71)
T ss_dssp HHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 6778888774 7888888999999999999999888764
No 130
>3b71_D T-cell surface glycoprotein CD4; four-helix bundle, protein-protein complex, ATP-binding, CEL junction, kinase, nucleotide-binding, phosphorylation; 2.82A {Homo sapiens}
Probab=27.70 E-value=9.5 Score=19.05 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=10.8
Q ss_pred CchHHHHHHHHHHHH
Q 029412 1 MIDFSRVQKELQECS 15 (194)
Q Consensus 1 m~~~~RL~~E~~~l~ 15 (194)
|+.++|+..|-+..+
T Consensus 5 ~sqikrlL~ekKTCq 19 (26)
T 3b71_D 5 MSQIKRLLSEKKTCQ 19 (26)
T ss_pred HHHHHHHHhhccccc
Confidence 677888888866554
No 131
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=27.70 E-value=30 Score=16.94 Aligned_cols=17 Identities=29% Similarity=0.683 Sum_probs=10.0
Q ss_pred CCCCCCcccccceeccc
Q 029412 63 PFEPPKMHFVTKVWHPN 79 (194)
Q Consensus 63 P~~pP~v~f~t~i~Hpn 79 (194)
|..-|.-.|..+.|||-
T Consensus 4 pmtlpenyfserpyhpp 20 (26)
T 2jrw_A 4 PMTLPENYFSERPYHPP 20 (26)
T ss_dssp CCCCSSSSCCSSSCCSC
T ss_pred ccccchhhcccCCCCCC
Confidence 34444555777777764
No 132
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=23.67 E-value=1.3e+02 Score=21.56 Aligned_cols=43 Identities=9% Similarity=0.070 Sum_probs=31.4
Q ss_pred ceEEE--EEEeCCCCCCCC-CCeEEEEeeCCCCCCCCCCCccccccee
Q 029412 32 LVHLT--GIIPGPVGTPYE-GGTFRLDITLPDGYPFEPPKMHFVTKVW 76 (194)
Q Consensus 32 ~~~w~--~~i~Gp~~tpy~-gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 76 (194)
++.|. +.+.|+.+.... .-+=++...+.+.|+. |...+..+.|
T Consensus 32 ~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~n--p~r~v~~pPF 77 (140)
T 3qrl_A 32 VRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFAN--PNRTFTDPPF 77 (140)
T ss_dssp CEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSSS--CEEEECSTTC
T ss_pred ccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCCC--CeEEEcCCCc
Confidence 47998 899999888664 4566688888888874 7666665543
No 133
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=23.46 E-value=65 Score=26.37 Aligned_cols=37 Identities=24% Similarity=0.242 Sum_probs=30.7
Q ss_pred hHHHHHHHHhc-CCChhHHHHHHHHhCCCHHHHHHHhh
Q 029412 156 VEEKVQKLVEM-GFPESQVRSTLEIVGGDENMALEKLL 192 (194)
Q Consensus 156 ~~~~~~~~~~~-g~~~~~~~~al~~~~~~~~~~~e~l~ 192 (194)
++++..+++.. |-+...|.--|.+++|+.++|+..-+
T Consensus 45 ~~~~~~~f~~~~~~~~~~~~~~l~~~~w~~~~~~~~~~ 82 (362)
T 4gew_A 45 DEQKLHEFAIITATDEAFAQSILQDVDWDLKKALDVFY 82 (362)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHTTSSSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCcHHHHHHHHhhcCchHHHHHHHHc
Confidence 45666666664 99999999999999999999997655
No 134
>3g9r_A Fusion complex of HIV-1 envelope glycoprotein and saccharomyces cerevisiae general...; GP41, MPER, membrane fusion, AIDS; 2.00A {Human immunodeficiency virus 1}
Probab=21.68 E-value=54 Score=18.21 Aligned_cols=15 Identities=20% Similarity=0.459 Sum_probs=11.8
Q ss_pred chHHHHHHHHHHHHh
Q 029412 2 IDFSRVQKELQECSK 16 (194)
Q Consensus 2 ~~~~RL~~E~~~l~~ 16 (194)
+.++||..|++.+.+
T Consensus 28 ~~~~~~~~~~~~~~~ 42 (42)
T 3g9r_A 28 SKIKRIENEIKRIKK 42 (42)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC
Confidence 467999999988753
Done!