BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029414
(194 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
pdb|3C3Y|B Chain B, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
Length = 237
Score = 277 bits (708), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 128/189 (67%), Positives = 160/189 (84%), Gaps = 1/189 (0%)
Query: 6 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYE 65
+ M T+P AGQLM+ +L+LVNAKKTIE+GVFTGYSLLLTAL+IP+DG+ITAID +RE YE
Sbjct: 50 SYMSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYE 109
Query: 66 IGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK 125
IGLP I+KAGV+HKINFIES+A+ LD LL+ E+EGS+D+ FVDADK NY YHERLMK
Sbjct: 110 IGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMK 169
Query: 126 LLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGD 185
L+KVGGI YDNTLWGGTVA PE +VPD F +R+A+++LN+ LA DPR+++ H+ LGD
Sbjct: 170 LVKVGGIVAYDNTLWGGTVAQPESEVPD-FMKENREAVIELNKLLAADPRIEIVHLPLGD 228
Query: 186 GITICRRIF 194
GIT CRR++
Sbjct: 229 GITFCRRLY 237
>pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|B Chain B, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|C Chain C, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|D Chain D, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUS|A Chain A, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|B Chain B, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|C Chain C, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|D Chain D, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
Length = 247
Score = 239 bits (611), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 110/187 (58%), Positives = 147/187 (78%)
Query: 7 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 66
+M T+ D GQ ++MLL+L+NAK T+EIGV+TGYSLL TAL IPEDG+I A+D+N+E YE+
Sbjct: 60 IMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYEL 119
Query: 67 GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 126
GLP+IKKAGVDHKI+F E AL VLD+++K +N GS+D+ FVDADKDNY NYH+RL+ L
Sbjct: 120 GLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDL 179
Query: 127 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 186
+KVGG+ YDNTLW G+V P + + R +L+LN++LA DPR+++ + +GDG
Sbjct: 180 VKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDG 239
Query: 187 ITICRRI 193
ITICRRI
Sbjct: 240 ITICRRI 246
>pdb|3R3H|A Chain A, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
pdb|3R3H|B Chain B, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
Length = 242
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 106/191 (55%), Gaps = 13/191 (6%)
Query: 6 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYE 65
A M AP+ Q M ML+RL AKK +E+G FTGYS L +L +P+DGQ+ D+N +
Sbjct: 40 ANMQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTK 99
Query: 66 IGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG---SFDYAFVDADKDNYCNYHER 122
P ++A +HKI AL L LL NEG FD+ F+DADK NY NY+E
Sbjct: 100 HAHPYWREAKQEHKIKLRLGPALDTLHSLL----NEGGEHQFDFIFIDADKTNYLNYYEL 155
Query: 123 LMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVA 182
+KL+ G+ DN W G V P + G +R+ I LN+ + +D RV +S +A
Sbjct: 156 ALKLVTPKGLIAIDNIFWDGKVIDPNDT-----SGQTRE-IKKLNQVIKNDSRVFVSLLA 209
Query: 183 LGDGITICRRI 193
+ DG+ + + I
Sbjct: 210 IADGMFLVQPI 220
>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A
Cationdependent O-Methyltransferase From The
Cyanobacterium Synechocystis Sp. Strain Pcc 6803
Length = 232
Score = 130 bits (326), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 104/187 (55%), Gaps = 11/187 (5%)
Query: 6 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYE 65
A M +P+ Q + +L+ L AK+ +EIGVF GYS L AL +P DGQI A D +
Sbjct: 52 APMQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATA 111
Query: 66 IGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK 125
I +KAGV KI+ AL+ L+QL + + FD F+DADK NY Y+E +
Sbjct: 112 IAKKYWQKAGVAEKISLRLGPALATLEQLTQ-GKPLPEFDLIFIDADKRNYPRYYEIGLN 170
Query: 126 LLKVGGIAVYDNTLWGGTVAV--PEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVAL 183
LL+ GG+ V DN LW G V P+E + Q + NR LA D RV++S + L
Sbjct: 171 LLRRGGLMVIDNVLWHGKVTEVDPQE--------AQTQVLQQFNRDLAQDERVRISVIPL 222
Query: 184 GDGITIC 190
GDG+T+
Sbjct: 223 GDGMTLA 229
>pdb|2AVD|A Chain A, Crystal Structure Of Human Catechol-O-Methyltransferase
Domain Containing 1
pdb|2AVD|B Chain B, Crystal Structure Of Human Catechol-O-Methyltransferase
Domain Containing 1
Length = 229
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 107/181 (59%), Gaps = 7/181 (3%)
Query: 13 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK 72
+ QL+A L RL+ AKK +++G FTGYS L AL +P DG++ +V+ + E+G P+ +
Sbjct: 56 EQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWR 115
Query: 73 KAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 132
+A +HKI+ AL LD+LL E G+FD A VDADK+N Y+ER ++LL+ GGI
Sbjct: 116 QAEAEHKIDLRLKPALETLDELLAAGEA-GTFDVAVVDADKENCSAYYERCLQLLRPGGI 174
Query: 133 AVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 192
LW G V P + + + + +LN + D RV +S + LGDG+T+ +
Sbjct: 175 LAVLRVLWRGKVLQPPKG------DVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFK 228
Query: 193 I 193
I
Sbjct: 229 I 229
>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella Burnetii
Length = 225
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 102/183 (55%), Gaps = 7/183 (3%)
Query: 10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLP 69
TAP+ QL+A+L++L AKK I+IG FTGYS + L +P+DG + DV+ ++ +
Sbjct: 48 TAPEQAQLLALLVKLXQAKKVIDIGTFTGYSAIAXGLALPKDGTLITCDVDEKSTALAKE 107
Query: 70 IIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV 129
+KAG+ KI S A L +L+ ++ +D ++DADK N Y+E +KLL+
Sbjct: 108 YWEKAGLSDKIGLRLSPAKDTLAELI-HAGQAWQYDLIYIDADKANTDLYYEESLKLLRE 166
Query: 130 GGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITI 189
GG+ DN L G VA E Q ++ Q I N+ + D RV + +GDG+T+
Sbjct: 167 GGLIAVDNVLRRGQVADEENQSENN------QLIRLFNQKVYKDERVDXILIPIGDGLTL 220
Query: 190 CRR 192
R+
Sbjct: 221 ARK 223
>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|B Chain B, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|C Chain C, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
Length = 239
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 106/198 (53%), Gaps = 16/198 (8%)
Query: 5 RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY 64
+A M +P+ GQ + +L ++ AK+ IEIG FTGYS L A +PEDG+I DV+ E
Sbjct: 39 QANMQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWT 98
Query: 65 EIGLPIIKKAGVDHKINFIESEALSVLDQLL----------KYSENEGSFDYAFVDADKD 114
+ K+ G+++KI AL L L+ ++ S D F+DADK+
Sbjct: 99 NVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKE 158
Query: 115 NYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDP 174
NY NY+ ++KLLK GG+ + DN LW G+VA Q P S I N + +D
Sbjct: 159 NYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEP------STVGIRKFNELVYNDS 212
Query: 175 RVQLSHVALGDGITICRR 192
V +S V + DG+++ R+
Sbjct: 213 LVDVSLVPIADGVSLVRK 230
>pdb|3TFW|A Chain A, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
pdb|3TFW|B Chain B, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
Length = 248
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 4/138 (2%)
Query: 11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPI 70
A + GQ +A+L+RL AK+ +EIG GYS + A +P DGQ+ ++ + ++
Sbjct: 48 AANQGQFLALLVRLTQAKRILEIGTLGGYSTIWXARELPADGQLLTLEADAHHAQVAREN 107
Query: 71 IKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG 130
++ AGVD ++ E AL L+ L + +FD F+DADK N +Y ++ + G
Sbjct: 108 LQLAGVDQRVTLREGPALQSLESLGECP----AFDLIFIDADKPNNPHYLRWALRYSRPG 163
Query: 131 GIAVYDNTLWGGTVAVPE 148
+ + DN + G V P+
Sbjct: 164 TLIIGDNVVRDGEVVNPQ 181
>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUL|B Chain B, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUW|A Chain A, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
pdb|3DUW|B Chain B, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
Length = 223
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 83/169 (49%), Gaps = 14/169 (8%)
Query: 11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPI 70
+P G+ + +L+++ A+ +EIG GYS + A + G++ ++ + + +I
Sbjct: 43 SPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSN 102
Query: 71 IKKAGVDHKINFIESEALSVLDQLLKYSENEG--SFDYAFVDADKDNYCNYHERLMKLLK 128
I++A ++ ++ AL L Q+ ENE FD+ F+DADK N Y E +KL +
Sbjct: 103 IERANLNDRVEVRTGLALDSLQQI----ENEKYEPFDFIFIDADKQNNPAYFEWALKLSR 158
Query: 129 VGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSR-QAILDLNRSLADDPRV 176
G + + DN V E +V D+ R Q I +A +PRV
Sbjct: 159 PGTVIIGDNV-------VREGEVIDNTSNDPRVQGIRRFYELIAAEPRV 200
>pdb|2GPY|A Chain A, Crystal Structure Of Putative O-methyltransferase From
Bacillus Halodurans
pdb|2GPY|B Chain B, Crystal Structure Of Putative O-methyltransferase From
Bacillus Halodurans
Length = 233
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 9/171 (5%)
Query: 21 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKI 80
LL+ + +EIG GYS + A +PE I +I+ + YE +K G++ +I
Sbjct: 49 LLKXAAPARILEIGTAIGYSAIRXAQALPE-ATIVSIERDERRYEEAHKHVKALGLESRI 107
Query: 81 NFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW 140
+ +AL + ++L Y FD F+DA K Y + + ++ GG+ + DN L+
Sbjct: 108 ELLFGDALQLGEKLELYP----LFDVLFIDAAKGQYRRFFDXYSPXVRPGGLILSDNVLF 163
Query: 141 GGTVAVPEEQVPDHFRGSSRQAILD-LNRSLADDPRVQLSHVALGDGITIC 190
G VA E +H R +D N+ L + P+ +GDGI I
Sbjct: 164 RGLVA---ETDIEHKRHKQLATKIDTYNQWLLEHPQYDTRIFPVGDGIAIS 211
>pdb|3NTV|A Chain A, Crystal Structure Of A Putative Caffeoyl-Coa
O-Methyltransferase From Staphylococcus Aureus
pdb|3NTV|B Chain B, Crystal Structure Of A Putative Caffeoyl-Coa
O-Methyltransferase From Staphylococcus Aureus
Length = 232
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 7/174 (4%)
Query: 17 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV 76
L+ L+R N K +EIG GYS A +I +D +T I+ N + +
Sbjct: 62 LIKQLIRXNNVKNILEIGTAIGYSSXQFA-SISDDIHVTTIERNETXIQYAKQNLATYHF 120
Query: 77 DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136
++++ IE AL + + N+ +D F+DA K + E LLK G+ + D
Sbjct: 121 ENQVRIIEGNALEQFENV-----NDKVYDXIFIDAAKAQSKKFFEIYTPLLKHQGLVITD 175
Query: 137 NTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITIC 190
N L+ G V+ + R ++ + D N L P + + + DG+ I
Sbjct: 176 NVLYHGFVSDIGIVRSRNVRQXVKK-VQDYNEWLIKQPGYTTNFLNIDDGLAIS 228
>pdb|3OE4|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Purine-Containing Bisubstrate Inhibitor -
Humanized Form
pdb|3OE5|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Pyridylsulfanyl-Containing Inhibitor -
Humanized Form
pdb|3OZR|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Bisubstrate Inhibitor, No Substituent In
The Adenine Site - Humanized Form
pdb|3OZS|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Trifluoromethyl-Imidazolyl-Containing
Inhibitor - Humanized Form
pdb|3OZT|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, 4- Oxo-Pyridinyl-Containing Inhibitor -
Humanized Form
pdb|3NWE|A Chain A, Rat Comt In Complex With A Methylated Desoxyribose
Bisubstrate- Containing Inhibitor Avoids Hydroxyl Group
pdb|3R6T|A Chain A, Rat Catechol O-Methyltransferase In Complex With The
Bisubstrate Inhibitor
4'-Fluoro-4,5-Dihydroxy-Biphenyl-3-Carboxylic Acid
{(E)-3-
[(2s,4r,
5r)-4-Hydroxy-5-(6-Methyl-Purin-9-Yl)-Tetrahydro-Furan-
2-Yl]- Allyl}-Amide
pdb|3U81|A Chain A, Crystal Structure Of A Sah-Bound Semi-Holo Form Of Rat
Catechol-O- Methyltransferase
Length = 221
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 15 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 74
GQ+M ++R + +E+G + GYS + A + ++ +++N + I ++ A
Sbjct: 47 GQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFA 106
Query: 75 GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK--LLKVGGI 132
G+ K+ + + ++ QL K + + + D F+D KD Y L K LL+ G +
Sbjct: 107 GLQDKVTILNGASQDLIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTV 165
Query: 133 AVYDNTLWGGTVAVPEEQVPD---HFRGSS 159
+ DN + GT PD + RGSS
Sbjct: 166 LLADNVIVPGT--------PDFLAYVRGSS 187
>pdb|1JR4|A Chain A, Catechol O-Methyltransferase Bisubstrate-Inhibitor Complex
pdb|1H1D|A Chain A, Catechol O-Methyltransferase
pdb|2CL5|A Chain A, Catechol-O-Methyltransferase In Complex With An Inhibitor
pdb|2CL5|B Chain B, Catechol-O-Methyltransferase In Complex With An Inhibitor
pdb|1VID|A Chain A, Catechol O-Methyltransferase
pdb|3HVH|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Methyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVI|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Ethyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVJ|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Propyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVJ|B Chain B, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Propyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVK|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Purine-Containing Bisubstrate Inhibitor -
Humanized Form
pdb|3NW9|A Chain A, Rat Comt In Complex With A Methylpurin-Containing
Bisubstrate Inhibitor
pdb|3NWB|A Chain A, Rat Comt In Complex With A Fluorinated
Desoxyribose-Containing Bisubstrate Inhibitor Avoids
Hydroxyl Group
pdb|3S68|A Chain A, Rat Comt In Complex With Sam And Tolcapone At 1.85a,
P3221, Rfree22.0
Length = 221
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 15 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 74
GQ+M ++R + +E+G + GYS + A + ++ +++N + I ++ A
Sbjct: 47 GQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFA 106
Query: 75 GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK--LLKVGGI 132
G+ K+ + + ++ QL K + + + D F+D KD Y L K LL+ G +
Sbjct: 107 GLQDKVTILNGASQDLIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTV 165
Query: 133 AVYDNTLWGGTVAVPEEQVPD---HFRGSS 159
+ DN + GT PD + RGSS
Sbjct: 166 LLADNVIVPGT--------PDFLAYVRGSS 187
>pdb|2ZLB|A Chain A, Crystal Structure Of Apo Form Of Rat Catechol-O-
Methyltransferase
pdb|2ZVJ|A Chain A, Crystal Structures Of Rat Catechol-O-Methyltransferase
Complexed With Coumarine-Based Inhibitor
pdb|2ZTH|A Chain A, Crystal Structure Of Holo Form Of Rat Catechol-O-
Methyltransferase
pdb|3A7D|A Chain A, Crystal Structures Of Rat Catechol-O-Methyltransferase
Complexed With New Bi-Substrate Type Inhibitor
Length = 223
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 15 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 74
GQ+M ++R + +E+G + GYS + A + ++ +++N + I ++ A
Sbjct: 49 GQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFA 108
Query: 75 GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK--LLKVGGI 132
G+ K+ + + ++ QL K + + + D F+D KD Y L K LL+ G +
Sbjct: 109 GLQDKVTILNGASQDLIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTV 167
Query: 133 AVYDNTLWGGTVAVPEEQVPD---HFRGSS 159
+ DN + GT PD + RGSS
Sbjct: 168 LLADNVIVPGT--------PDFLAYVRGSS 189
>pdb|3BWM|A Chain A, Crystal Structure Of Human Catechol O-Methyltransferase
With Bound Sam And Dnc
Length = 214
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 14/157 (8%)
Query: 8 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 67
M G+++ +++ +E+G + GYS + A + ++ I++N + I
Sbjct: 39 MNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAIT 98
Query: 68 LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK-- 125
++ AGV K+ + + ++ QL K + + + D F+D KD Y L +
Sbjct: 99 QRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEECG 157
Query: 126 LLKVGGIAVYDNTLWGGTVAVPEEQVPD---HFRGSS 159
LL+ G + + DN + G PD H RGSS
Sbjct: 158 LLRKGTVLLADNVICPGA--------PDFLAHVRGSS 186
>pdb|3A7E|A Chain A, Crystal Structure Of Human Comt Complexed With Sam And
3,5- Dinitrocatechol
Length = 216
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 14/157 (8%)
Query: 8 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 67
M G+++ +++ +E+G + GYS + A + ++ I++N + I
Sbjct: 42 MNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAIT 101
Query: 68 LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK-- 125
++ AGV K+ + + ++ QL K + + + D F+D KD Y L +
Sbjct: 102 QRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEECG 160
Query: 126 LLKVGGIAVYDNTLWGGTVAVPEEQVPD---HFRGSS 159
LL+ G + + DN + G PD H RGSS
Sbjct: 161 LLRKGTVLLADNVICPGA--------PDFLAHVRGSS 189
>pdb|3BWY|A Chain A, Crystal Structure Of Human 108m Catechol O-
Methyltransferase Bound With S-Adenosylmethionine And
Inhibitor Dinitrocatechol
Length = 214
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 14/157 (8%)
Query: 8 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 67
M G+++ +++ +E+G + GYS + A + ++ I++N + I
Sbjct: 39 MNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAIT 98
Query: 68 LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK-- 125
++ AG+ K+ + + ++ QL K + + + D F+D KD Y L +
Sbjct: 99 QRMVDFAGMKDKVTLVVGASQDIIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEECG 157
Query: 126 LLKVGGIAVYDNTLWGGTVAVPEEQVPD---HFRGSS 159
LL+ G + + DN + G PD H RGSS
Sbjct: 158 LLRKGTVLLADNVICPGA--------PDFLAHVRGSS 186
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 33.5 bits (75), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%)
Query: 17 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV 76
+M LL L K +EIG GY +TA + EDG + +I+ E E ++K G
Sbjct: 68 MMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY 127
Query: 77 DHKINFI 83
D+ I +
Sbjct: 128 DNVIVIV 134
>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase
pdb|1DL5|B Chain B, Protein-L-Isoaspartate O-Methyltransferase
Length = 317
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 16 QLMAMLLRLVNAKK---TIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK 72
LMA+ + V K +EIG TGY+ + + + E G + +++ +R+ EI ++
Sbjct: 62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVE 121
Query: 73 KAGVDHKI 80
+ G+++ I
Sbjct: 122 RLGIENVI 129
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 12/106 (11%)
Query: 29 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 88
K +E G G ++ A P D +IT+ID++ E+ E +K G+ + + F+++
Sbjct: 40 KVLEAGCGIGAQTVILAKNNP-DAEITSIDISPESLEKARENTEKNGIKN-VKFLQANIF 97
Query: 89 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHE---RLMKLLKVGG 131
S+ + + SFD+ FV ++ + E L K+LK GG
Sbjct: 98 SLPFE-------DSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGG 136
>pdb|3C3P|A Chain A, Crystal Structure Of A Methyltransferase (Np_951602.1)
From Geobacter Sulfurreducens At 1.90 A Resolution
pdb|3C3P|B Chain B, Crystal Structure Of A Methyltransferase (Np_951602.1)
From Geobacter Sulfurreducens At 1.90 A Resolution
pdb|3C3P|C Chain C, Crystal Structure Of A Methyltransferase (Np_951602.1)
From Geobacter Sulfurreducens At 1.90 A Resolution
Length = 210
Score = 30.0 bits (66), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 7/135 (5%)
Query: 15 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 74
G+L+ +L R+ + + G G + A I ++ ID +R+ E +
Sbjct: 45 GRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVXIDPDRDNVEHARRXLHDN 104
Query: 75 GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 134
G+ ++ + L + + + D F D D N + ER + L + +
Sbjct: 105 GLIDRVELQVGDPLGI-------AAGQRDIDILFXDCDVFNGADVLERXNRCLAKNALLI 157
Query: 135 YDNTLWGGTVAVPEE 149
N L G+VA E
Sbjct: 158 AVNALRRGSVAESHE 172
>pdb|3RIP|A Chain A, Crystal Structure Of Human Gamma-Tubulin Complex Protein 4
(Gcp4)
Length = 677
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 160 RQAILDLNRSLADDPRVQLSHV 181
RQA+LDL + DP + +SHV
Sbjct: 101 RQALLDLEQEFLGDPHLSISHV 122
>pdb|3TAH|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
pdb|3TAH|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
Length = 272
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
Query: 51 DGQITAIDVNRETYEIGLPII-----KKAGVDH 78
DGQ I+V++ +Y +G+P++ K+ GVD
Sbjct: 121 DGQGKKINVDKLSYHLGVPVVATSALKQTGVDQ 153
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
Query: 51 DGQITAIDVNRETYEIGLPII-----KKAGVDH 78
DGQ I+V++ +Y +G+P++ K+ GVD
Sbjct: 121 DGQGKKINVDKLSYHLGVPVVATSALKQTGVDQ 153
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
Length = 272
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
Query: 51 DGQITAIDVNRETYEIGLPII-----KKAGVDH 78
DGQ I+V++ +Y +G+P++ K+ GVD
Sbjct: 121 DGQGKKINVDKLSYHLGVPVVATSALKQTGVDQ 153
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a Mutant
Bound To Gdp
Length = 272
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
Query: 51 DGQITAIDVNRETYEIGLPII-----KKAGVDH 78
DGQ I+V++ +Y +G+P++ K+ GVD
Sbjct: 121 DGQGKKINVDKLSYHLGVPVVATSALKQTGVDQ 153
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s Mutant
Without Nucleotide
Length = 272
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
Query: 51 DGQITAIDVNRETYEIGLPII-----KKAGVDH 78
DGQ I+V++ +Y +G+P++ K+ GVD
Sbjct: 121 DGQGKKINVDKLSYHLGVPVVATSALKQTGVDQ 153
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
Query: 51 DGQITAIDVNRETYEIGLPII-----KKAGVDH 78
DGQ I+V++ +Y +G+P++ K+ GVD
Sbjct: 121 DGQGKKINVDKLSYHLGVPVVATSALKQTGVDQ 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,718,252
Number of Sequences: 62578
Number of extensions: 240576
Number of successful extensions: 679
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 645
Number of HSP's gapped (non-prelim): 36
length of query: 194
length of database: 14,973,337
effective HSP length: 94
effective length of query: 100
effective length of database: 9,091,005
effective search space: 909100500
effective search space used: 909100500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)