Query 029414
Match_columns 194
No_of_seqs 169 out of 1912
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 12:32:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029414.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029414hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01596 Methyltransf_3: O-met 100.0 1.4E-39 3.1E-44 242.7 20.2 182 5-193 24-205 (205)
2 PLN02589 caffeoyl-CoA O-methyl 100.0 2.2E-37 4.9E-42 236.4 21.9 187 6-193 59-246 (247)
3 PLN02476 O-methyltransferase 100.0 2.3E-36 5.1E-41 233.4 22.4 181 6-193 98-278 (278)
4 COG4122 Predicted O-methyltran 100.0 2E-36 4.2E-41 225.6 20.2 177 9-194 42-219 (219)
5 PLN02781 Probable caffeoyl-CoA 100.0 5.6E-36 1.2E-40 228.8 22.1 186 6-193 48-233 (234)
6 KOG1663 O-methyltransferase [S 100.0 4.7E-34 1E-38 210.6 19.1 186 5-193 52-237 (237)
7 COG2242 CobL Precorrin-6B meth 99.8 1.1E-18 2.4E-23 126.2 15.3 121 9-139 17-137 (187)
8 PF12847 Methyltransf_18: Meth 99.8 9.1E-19 2E-23 119.1 9.8 104 26-137 1-111 (112)
9 PRK04457 spermidine synthase; 99.8 3.1E-17 6.8E-22 127.5 17.8 124 6-136 46-176 (262)
10 PRK00377 cbiT cobalt-precorrin 99.7 1.8E-16 3.8E-21 118.6 16.2 121 12-138 26-146 (198)
11 TIGR00138 gidB 16S rRNA methyl 99.7 4E-17 8.7E-22 120.2 11.7 102 24-136 40-141 (181)
12 TIGR02469 CbiT precorrin-6Y C5 99.7 6.6E-17 1.4E-21 111.6 12.1 117 12-136 5-121 (124)
13 PRK08287 cobalt-precorrin-6Y C 99.7 3.4E-16 7.4E-21 116.0 15.7 119 9-138 14-132 (187)
14 PRK00107 gidB 16S rRNA methylt 99.7 5.8E-16 1.3E-20 114.4 16.2 101 26-137 45-145 (187)
15 PF01209 Ubie_methyltran: ubiE 99.7 4.9E-17 1.1E-21 124.1 10.8 113 20-140 41-156 (233)
16 PRK13942 protein-L-isoaspartat 99.7 6.8E-17 1.5E-21 122.0 11.4 118 8-136 58-175 (212)
17 COG2518 Pcm Protein-L-isoaspar 99.7 5.2E-17 1.1E-21 119.9 10.0 116 7-136 53-168 (209)
18 PRK13944 protein-L-isoaspartat 99.7 1.2E-16 2.6E-21 120.1 11.6 117 11-137 57-173 (205)
19 COG2226 UbiE Methylase involve 99.7 1.4E-16 2.9E-21 121.0 11.1 107 26-141 51-160 (238)
20 PRK14901 16S rRNA methyltransf 99.7 4.4E-16 9.5E-21 129.2 14.8 164 10-194 236-432 (434)
21 TIGR00080 pimt protein-L-isoas 99.7 1.8E-16 4E-21 120.0 11.6 116 10-136 61-176 (215)
22 PLN03075 nicotianamine synthas 99.7 2E-16 4.2E-21 123.5 11.6 120 10-137 108-233 (296)
23 PF01135 PCMT: Protein-L-isoas 99.7 7.4E-17 1.6E-21 121.0 8.7 119 7-136 53-171 (209)
24 PRK07402 precorrin-6B methylas 99.7 9.5E-16 2E-20 114.5 14.2 122 8-138 22-143 (196)
25 PF13847 Methyltransf_31: Meth 99.7 2.8E-16 6.1E-21 112.7 10.6 108 25-139 2-112 (152)
26 PRK14903 16S rRNA methyltransf 99.7 2.5E-15 5.4E-20 124.4 16.9 125 9-140 220-369 (431)
27 TIGR03533 L3_gln_methyl protei 99.7 4.8E-15 1E-19 116.5 16.4 119 9-136 100-250 (284)
28 PRK11036 putative S-adenosyl-L 99.7 1.4E-15 3E-20 118.1 12.7 103 25-136 43-148 (255)
29 TIGR00446 nop2p NOL1/NOP2/sun 99.7 1.2E-14 2.6E-19 113.2 17.7 119 13-139 58-201 (264)
30 PF05175 MTS: Methyltransferas 99.7 7.5E-16 1.6E-20 112.5 10.3 110 16-135 21-138 (170)
31 PRK14902 16S rRNA methyltransf 99.7 6.1E-15 1.3E-19 122.8 16.1 125 8-139 232-381 (444)
32 TIGR02752 MenG_heptapren 2-hep 99.7 2.4E-15 5.2E-20 115.0 12.5 110 21-138 40-152 (231)
33 COG2230 Cfa Cyclopropane fatty 99.7 3E-15 6.4E-20 115.7 12.8 124 7-142 50-181 (283)
34 TIGR00091 tRNA (guanine-N(7)-) 99.6 1.1E-14 2.5E-19 108.5 15.6 106 25-136 15-131 (194)
35 PRK14904 16S rRNA methyltransf 99.6 6.2E-15 1.4E-19 122.7 14.7 123 9-140 233-380 (445)
36 PRK11805 N5-glutamine S-adenos 99.6 1.8E-14 3.8E-19 114.4 16.5 119 9-136 112-262 (307)
37 PLN02233 ubiquinone biosynthes 99.6 3.2E-15 6.9E-20 116.3 11.6 112 22-140 69-185 (261)
38 PRK00121 trmB tRNA (guanine-N( 99.6 3.4E-15 7.4E-20 111.9 11.4 119 10-136 26-155 (202)
39 TIGR00563 rsmB ribosomal RNA s 99.6 9E-15 2E-19 121.2 14.9 126 9-140 221-371 (426)
40 COG2519 GCD14 tRNA(1-methylade 99.6 3.4E-15 7.4E-20 112.7 10.6 114 14-137 82-195 (256)
41 PRK00312 pcm protein-L-isoaspa 99.6 5.3E-15 1.1E-19 111.8 11.2 115 8-136 60-174 (212)
42 PRK00811 spermidine synthase; 99.6 3.5E-14 7.6E-19 111.6 16.2 105 25-136 75-190 (283)
43 PLN02366 spermidine synthase 99.6 4.3E-14 9.3E-19 111.9 16.7 108 24-137 89-206 (308)
44 PRK10901 16S rRNA methyltransf 99.6 2.3E-14 5E-19 118.8 15.9 123 9-139 227-374 (427)
45 PF13659 Methyltransf_26: Meth 99.6 8.9E-15 1.9E-19 100.1 11.0 102 27-135 1-113 (117)
46 COG2227 UbiG 2-polyprenyl-3-me 99.6 4E-15 8.7E-20 111.5 9.5 104 25-140 58-164 (243)
47 PF08704 GCD14: tRNA methyltra 99.6 6.1E-15 1.3E-19 112.8 10.5 115 15-136 29-145 (247)
48 PF02353 CMAS: Mycolic acid cy 99.6 4.2E-15 9.1E-20 115.9 9.6 118 12-141 45-170 (273)
49 COG4123 Predicted O-methyltran 99.6 9.4E-15 2E-19 111.1 11.2 115 15-135 33-168 (248)
50 PF13578 Methyltransf_24: Meth 99.6 1.2E-15 2.6E-20 102.9 5.4 102 31-138 1-106 (106)
51 PRK01581 speE spermidine synth 99.6 9.2E-14 2E-18 111.0 17.0 106 24-136 148-267 (374)
52 PRK15128 23S rRNA m(5)C1962 me 99.6 9.7E-14 2.1E-18 113.5 17.2 109 24-137 218-339 (396)
53 PLN02244 tocopherol O-methyltr 99.6 1.1E-14 2.3E-19 117.4 10.6 105 25-138 117-224 (340)
54 smart00828 PKS_MT Methyltransf 99.6 3E-14 6.5E-19 108.4 12.4 103 28-139 1-106 (224)
55 PF05401 NodS: Nodulation prot 99.6 4.5E-15 9.8E-20 108.4 7.4 140 27-192 44-194 (201)
56 PRK11873 arsM arsenite S-adeno 99.6 1.6E-14 3.5E-19 113.1 11.0 112 23-142 74-188 (272)
57 PLN02396 hexaprenyldihydroxybe 99.6 1.8E-14 3.9E-19 114.7 11.2 104 26-139 131-237 (322)
58 PRK11207 tellurite resistance 99.6 1.5E-14 3.3E-19 108.1 10.1 100 24-135 28-132 (197)
59 PRK10909 rsmD 16S rRNA m(2)G96 99.6 1.8E-13 4E-18 101.9 14.8 122 7-137 34-159 (199)
60 COG1092 Predicted SAM-dependen 99.6 1.1E-13 2.4E-18 112.1 14.6 111 24-139 215-338 (393)
61 TIGR00536 hemK_fam HemK family 99.6 5.7E-14 1.2E-18 110.6 12.7 119 10-137 94-244 (284)
62 PRK13943 protein-L-isoaspartat 99.6 6.4E-14 1.4E-18 111.5 12.8 117 9-136 63-179 (322)
63 TIGR00417 speE spermidine synt 99.6 3.5E-13 7.6E-18 105.4 16.8 106 24-136 70-185 (270)
64 PRK15451 tRNA cmo(5)U34 methyl 99.6 5.6E-14 1.2E-18 108.5 12.1 106 25-139 55-166 (247)
65 PF07279 DUF1442: Protein of u 99.6 3.3E-13 7.2E-18 99.6 15.4 157 10-192 25-186 (218)
66 TIGR00740 methyltransferase, p 99.6 1.5E-13 3.3E-18 105.7 13.8 106 26-140 53-164 (239)
67 TIGR00477 tehB tellurite resis 99.6 4.7E-14 1E-18 105.3 10.6 103 21-136 25-132 (195)
68 COG4106 Tam Trans-aconitate me 99.6 1.6E-14 3.5E-19 106.2 7.7 98 24-136 28-128 (257)
69 COG2264 PrmA Ribosomal protein 99.5 2.9E-13 6.4E-18 105.5 15.1 114 14-139 152-265 (300)
70 PF13649 Methyltransf_25: Meth 99.5 2.9E-14 6.4E-19 95.2 7.9 93 30-131 1-101 (101)
71 PRK15001 SAM-dependent 23S rib 99.5 8.4E-14 1.8E-18 112.8 11.5 113 14-136 217-339 (378)
72 PRK14103 trans-aconitate 2-met 99.5 4.2E-14 9.1E-19 109.7 9.0 95 25-136 28-125 (255)
73 PRK01683 trans-aconitate 2-met 99.5 6.4E-14 1.4E-18 108.9 10.0 98 24-136 29-129 (258)
74 PF08241 Methyltransf_11: Meth 99.5 1.3E-14 2.8E-19 95.2 5.2 92 31-135 1-95 (95)
75 PRK00517 prmA ribosomal protei 99.5 1.4E-12 3.1E-17 100.9 17.4 108 15-139 107-215 (250)
76 PF03602 Cons_hypoth95: Conser 99.5 2.9E-13 6.2E-18 99.7 12.7 126 7-137 22-153 (183)
77 TIGR00406 prmA ribosomal prote 99.5 5.7E-13 1.2E-17 105.1 15.0 103 26-139 159-261 (288)
78 PLN02823 spermine synthase 99.5 7.2E-13 1.6E-17 106.0 15.3 106 24-136 101-219 (336)
79 TIGR03534 RF_mod_PrmC protein- 99.5 3.5E-13 7.7E-18 104.1 12.9 118 9-136 68-216 (251)
80 PRK08317 hypothetical protein; 99.5 5.2E-13 1.1E-17 102.1 13.8 115 19-142 12-129 (241)
81 PRK04266 fibrillarin; Provisio 99.5 1.5E-13 3.3E-18 104.5 10.6 113 14-136 58-175 (226)
82 PRK11783 rlmL 23S rRNA m(2)G24 99.5 3.8E-13 8.3E-18 117.5 14.3 109 22-138 534-657 (702)
83 TIGR00095 RNA methyltransferas 99.5 1.5E-12 3.1E-17 96.6 15.3 126 7-137 30-159 (189)
84 PRK14121 tRNA (guanine-N(7)-)- 99.5 4.3E-13 9.4E-18 108.5 13.3 105 25-136 121-234 (390)
85 TIGR00537 hemK_rel_arch HemK-r 99.5 1E-12 2.2E-17 96.8 14.2 108 16-137 9-140 (179)
86 PRK01544 bifunctional N5-gluta 99.5 4.4E-13 9.5E-18 113.1 12.9 101 27-136 139-268 (506)
87 TIGR02716 C20_methyl_CrtF C-20 99.5 3.3E-13 7.1E-18 107.4 11.3 112 20-142 143-259 (306)
88 PRK03522 rumB 23S rRNA methylu 99.5 1.5E-12 3.2E-17 104.1 14.8 122 5-136 148-273 (315)
89 PRK00216 ubiE ubiquinone/menaq 99.5 5.5E-13 1.2E-17 102.1 11.8 107 25-138 50-159 (239)
90 PRK12335 tellurite resistance 99.5 3.7E-13 8E-18 106.2 10.9 99 24-135 118-221 (287)
91 PRK15068 tRNA mo(5)U34 methylt 99.5 5E-13 1.1E-17 106.9 11.6 108 25-142 121-231 (322)
92 PF08242 Methyltransf_12: Meth 99.5 1.4E-14 3.1E-19 96.3 2.3 96 31-133 1-99 (99)
93 PF06325 PrmA: Ribosomal prote 99.5 1.8E-12 3.8E-17 101.9 14.3 112 15-139 149-261 (295)
94 PTZ00098 phosphoethanolamine N 99.5 3.2E-13 6.9E-18 105.2 9.4 106 23-140 49-159 (263)
95 PF10672 Methyltrans_SAM: S-ad 99.5 1.4E-12 3.1E-17 101.9 12.8 118 11-137 111-238 (286)
96 PF03848 TehB: Tellurite resis 99.5 6E-13 1.3E-17 98.1 10.1 114 11-138 16-134 (192)
97 TIGR03704 PrmC_rel_meth putati 99.5 1.7E-12 3.7E-17 100.4 12.9 117 10-136 66-215 (251)
98 PRK14967 putative methyltransf 99.5 1.8E-12 3.9E-17 98.7 12.8 100 25-136 35-158 (223)
99 PRK14966 unknown domain/N5-glu 99.5 1.4E-12 3E-17 106.2 12.7 121 7-136 231-380 (423)
100 TIGR02085 meth_trns_rumB 23S r 99.5 3.4E-12 7.4E-17 104.1 15.1 122 4-136 207-333 (374)
101 PRK14968 putative methyltransf 99.5 1.9E-12 4.1E-17 95.7 12.5 110 16-136 13-147 (188)
102 PRK13168 rumA 23S rRNA m(5)U19 99.4 3.2E-12 6.9E-17 106.6 14.4 123 6-136 273-399 (443)
103 TIGR00452 methyltransferase, p 99.4 1.4E-12 3E-17 103.6 11.6 108 25-142 120-230 (314)
104 PRK09328 N5-glutamine S-adenos 99.4 1.3E-12 2.8E-17 102.4 11.3 117 10-136 89-237 (275)
105 PRK09489 rsmC 16S ribosomal RN 99.4 1.4E-12 2.9E-17 105.0 11.6 109 15-136 186-302 (342)
106 PF02390 Methyltransf_4: Putat 99.4 7.5E-12 1.6E-16 93.2 14.5 126 28-179 19-156 (195)
107 TIGR03587 Pse_Me-ase pseudamin 99.4 1.7E-12 3.7E-17 97.4 11.2 103 23-142 40-147 (204)
108 COG2890 HemK Methylase of poly 99.4 1.1E-11 2.4E-16 97.2 16.1 119 8-137 90-238 (280)
109 PRK06922 hypothetical protein; 99.4 2.2E-12 4.8E-17 109.7 13.0 112 20-139 412-539 (677)
110 COG0421 SpeE Spermidine syntha 99.4 1.1E-11 2.4E-16 96.8 15.8 107 24-137 74-190 (282)
111 PLN02336 phosphoethanolamine N 99.4 1.2E-12 2.5E-17 110.2 11.1 106 24-140 264-372 (475)
112 TIGR02072 BioC biotin biosynth 99.4 1.5E-12 3.3E-17 99.6 10.8 100 26-138 34-136 (240)
113 PRK11933 yebU rRNA (cytosine-C 99.4 7.2E-12 1.6E-16 104.3 15.5 120 14-140 99-245 (470)
114 TIGR00479 rumA 23S rRNA (uraci 99.4 7.6E-12 1.7E-16 104.0 15.6 124 5-136 267-395 (431)
115 TIGR01177 conserved hypothetic 99.4 1.8E-12 3.9E-17 104.2 11.4 115 11-136 167-293 (329)
116 PRK10258 biotin biosynthesis p 99.4 9.5E-13 2E-17 101.9 9.1 96 26-137 42-140 (251)
117 COG2813 RsmC 16S RNA G1207 met 99.4 1.8E-12 3.8E-17 100.8 10.3 113 11-135 144-264 (300)
118 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 2.9E-12 6.3E-17 97.1 11.5 106 24-139 37-145 (223)
119 PLN02490 MPBQ/MSBQ methyltrans 99.4 2.5E-12 5.5E-17 102.9 10.8 100 26-137 113-215 (340)
120 PRK03612 spermidine synthase; 99.4 3E-12 6.4E-17 108.5 11.5 107 24-137 295-415 (521)
121 KOG1270 Methyltransferases [Co 99.4 4.7E-13 1E-17 101.3 5.9 100 28-140 91-198 (282)
122 PF01564 Spermine_synth: Sperm 99.4 4.6E-11 9.9E-16 92.1 16.3 107 24-137 74-191 (246)
123 COG0742 N6-adenine-specific me 99.4 2.1E-11 4.6E-16 88.9 13.4 125 7-137 23-154 (187)
124 PLN02336 phosphoethanolamine N 99.4 3.8E-12 8.3E-17 107.1 10.9 106 24-140 35-145 (475)
125 PTZ00146 fibrillarin; Provisio 99.4 6.7E-12 1.4E-16 97.9 11.3 106 24-136 130-236 (293)
126 PF13489 Methyltransf_23: Meth 99.4 7.1E-12 1.5E-16 90.1 10.5 106 14-140 9-118 (161)
127 PRK05134 bifunctional 3-demeth 99.4 1.5E-11 3.3E-16 94.1 12.7 112 15-137 37-151 (233)
128 PRK11705 cyclopropane fatty ac 99.4 7.5E-12 1.6E-16 102.3 11.5 100 24-139 165-269 (383)
129 COG0220 Predicted S-adenosylme 99.4 2.1E-11 4.5E-16 92.4 12.9 104 27-136 49-163 (227)
130 TIGR03840 TMPT_Se_Te thiopurin 99.4 6E-12 1.3E-16 95.0 9.7 101 26-138 34-153 (213)
131 PRK11088 rrmA 23S rRNA methylt 99.4 6.1E-12 1.3E-16 98.5 10.0 94 26-136 85-180 (272)
132 COG2263 Predicted RNA methylas 99.4 1.1E-10 2.4E-15 84.7 15.5 112 2-127 19-137 (198)
133 PRK05031 tRNA (uracil-5-)-meth 99.3 3.8E-11 8.3E-16 97.5 14.5 126 4-136 181-319 (362)
134 TIGR03438 probable methyltrans 99.3 3.4E-11 7.3E-16 95.6 13.2 124 11-136 43-176 (301)
135 PRK13255 thiopurine S-methyltr 99.3 1.3E-11 2.8E-16 93.5 10.2 98 26-135 37-153 (218)
136 TIGR01983 UbiG ubiquinone bios 99.3 3.9E-11 8.4E-16 91.2 12.9 117 12-138 27-150 (224)
137 TIGR02021 BchM-ChlM magnesium 99.3 3.1E-11 6.7E-16 91.6 11.8 99 25-136 54-157 (219)
138 PRK11188 rrmJ 23S rRNA methylt 99.3 2.3E-11 4.9E-16 91.7 10.9 99 25-136 50-164 (209)
139 PF06080 DUF938: Protein of un 99.3 9.4E-12 2E-16 92.0 8.3 154 9-176 6-168 (204)
140 KOG2904 Predicted methyltransf 99.3 2.4E-11 5.2E-16 92.6 10.5 125 7-138 123-286 (328)
141 PRK04338 N(2),N(2)-dimethylgua 99.3 8E-11 1.7E-15 96.0 14.3 120 7-136 33-157 (382)
142 COG2265 TrmA SAM-dependent met 99.3 6.1E-11 1.3E-15 97.9 13.6 125 3-136 266-395 (432)
143 COG0144 Sun tRNA and rRNA cyto 99.3 1.1E-10 2.3E-15 94.6 14.8 128 8-140 138-291 (355)
144 smart00650 rADc Ribosomal RNA 99.3 4E-11 8.6E-16 87.5 11.1 103 24-139 11-115 (169)
145 KOG4300 Predicted methyltransf 99.3 1.2E-11 2.6E-16 90.6 8.0 101 27-136 77-181 (252)
146 KOG1540 Ubiquinone biosynthesi 99.3 2.5E-11 5.4E-16 91.6 9.7 104 26-136 100-213 (296)
147 KOG1661 Protein-L-isoaspartate 99.3 2E-11 4.3E-16 89.6 8.0 117 10-136 64-192 (237)
148 PF08003 Methyltransf_9: Prote 99.3 6E-11 1.3E-15 92.3 11.1 118 17-144 106-226 (315)
149 PRK07580 Mg-protoporphyrin IX 99.3 1.1E-10 2.4E-15 89.0 12.5 98 25-135 62-164 (230)
150 cd02440 AdoMet_MTases S-adenos 99.3 8.7E-11 1.9E-15 77.3 10.5 99 29-136 1-103 (107)
151 PTZ00338 dimethyladenosine tra 99.3 2.4E-10 5.2E-15 90.2 14.4 99 4-114 14-112 (294)
152 TIGR02143 trmA_only tRNA (urac 99.3 2.7E-10 5.9E-15 92.3 14.9 125 5-136 173-310 (353)
153 PF04989 CmcI: Cephalosporin h 99.3 6.4E-11 1.4E-15 87.8 10.2 163 10-180 16-187 (206)
154 KOG1271 Methyltransferases [Ge 99.3 8E-11 1.7E-15 84.7 10.1 106 27-140 68-184 (227)
155 PLN02672 methionine S-methyltr 99.2 1.5E-10 3.3E-15 104.0 14.0 125 6-137 94-278 (1082)
156 TIGR00308 TRM1 tRNA(guanine-26 99.2 2.4E-10 5.1E-15 92.9 13.7 124 5-136 19-146 (374)
157 PF02475 Met_10: Met-10+ like- 99.2 6.8E-11 1.5E-15 88.0 9.5 114 12-135 87-200 (200)
158 smart00138 MeTrc Methyltransfe 99.2 2.7E-11 5.9E-16 94.4 7.5 105 26-137 99-242 (264)
159 TIGR00438 rrmJ cell division p 99.2 7.8E-11 1.7E-15 87.4 9.5 100 24-136 30-145 (188)
160 KOG2915 tRNA(1-methyladenosine 99.2 3.4E-10 7.3E-15 86.3 12.7 112 17-135 96-207 (314)
161 PHA03412 putative methyltransf 99.2 2.6E-10 5.7E-15 86.3 11.9 118 5-139 31-165 (241)
162 PF10294 Methyltransf_16: Puta 99.2 2.5E-10 5.4E-15 83.6 11.1 108 24-137 43-156 (173)
163 PRK05785 hypothetical protein; 99.2 1.6E-10 3.6E-15 88.1 10.5 88 26-131 51-141 (226)
164 COG3963 Phospholipid N-methylt 99.2 3.5E-10 7.7E-15 80.3 10.6 122 6-135 28-154 (194)
165 PRK06202 hypothetical protein; 99.2 8.5E-11 1.8E-15 90.0 8.2 104 24-140 58-169 (232)
166 PF01189 Nol1_Nop2_Fmu: NOL1/N 99.2 1.9E-09 4.1E-14 84.8 16.0 153 9-184 68-249 (283)
167 PHA03411 putative methyltransf 99.2 7E-10 1.5E-14 85.8 12.6 96 26-136 64-182 (279)
168 PRK00536 speE spermidine synth 99.2 8.7E-10 1.9E-14 85.3 12.3 99 24-137 70-171 (262)
169 PF09445 Methyltransf_15: RNA 99.2 1.1E-10 2.3E-15 83.9 6.7 78 28-112 1-78 (163)
170 PRK11727 23S rRNA mA1618 methy 99.1 4.2E-09 9.1E-14 83.8 15.6 83 26-112 114-198 (321)
171 COG2521 Predicted archaeal met 99.1 5.7E-10 1.2E-14 83.4 9.7 104 25-136 133-244 (287)
172 PF05891 Methyltransf_PK: AdoM 99.1 2.6E-10 5.6E-15 84.9 7.7 112 26-147 55-173 (218)
173 COG2520 Predicted methyltransf 99.1 1.1E-09 2.3E-14 87.4 11.2 117 14-140 176-292 (341)
174 PRK00274 ksgA 16S ribosomal RN 99.1 2.4E-09 5.3E-14 83.9 13.1 106 6-125 22-127 (272)
175 PRK14896 ksgA 16S ribosomal RN 99.1 2.2E-09 4.8E-14 83.5 12.7 95 4-113 7-101 (258)
176 PRK13256 thiopurine S-methyltr 99.1 2E-09 4.3E-14 81.6 11.9 124 9-141 27-167 (226)
177 KOG2899 Predicted methyltransf 99.1 4.4E-10 9.4E-15 84.4 8.0 108 26-140 58-212 (288)
178 PLN02585 magnesium protoporphy 99.1 3.7E-09 8E-14 84.2 13.1 96 26-135 144-248 (315)
179 PF01170 UPF0020: Putative RNA 99.1 1.3E-09 2.9E-14 80.1 9.6 120 9-136 11-150 (179)
180 PF02527 GidB: rRNA small subu 99.1 1.7E-09 3.7E-14 79.6 10.1 97 29-136 51-147 (184)
181 PF05724 TPMT: Thiopurine S-me 99.1 2E-09 4.4E-14 81.5 10.7 120 6-135 18-153 (218)
182 KOG3420 Predicted RNA methylas 99.1 6.5E-10 1.4E-14 77.1 7.0 115 3-128 22-144 (185)
183 COG0357 GidB Predicted S-adeno 99.1 5.1E-09 1.1E-13 78.5 12.3 98 27-135 68-166 (215)
184 KOG3191 Predicted N6-DNA-methy 99.0 3.6E-08 7.8E-13 71.1 15.5 103 26-138 43-169 (209)
185 PRK01544 bifunctional N5-gluta 99.0 1.1E-08 2.5E-13 86.5 14.9 104 26-136 347-461 (506)
186 TIGR00755 ksgA dimethyladenosi 99.0 7.3E-09 1.6E-13 80.3 12.7 107 4-125 7-116 (253)
187 COG0030 KsgA Dimethyladenosine 99.0 8.9E-09 1.9E-13 79.2 12.7 108 4-124 8-116 (259)
188 COG4976 Predicted methyltransf 99.0 7.2E-10 1.6E-14 82.6 6.2 155 16-193 112-286 (287)
189 PF05958 tRNA_U5-meth_tr: tRNA 99.0 4.1E-09 8.8E-14 85.4 10.3 116 4-123 171-299 (352)
190 PF07021 MetW: Methionine bios 99.0 2.1E-09 4.5E-14 78.7 7.7 98 25-138 12-112 (193)
191 KOG2730 Methylase [General fun 99.0 2E-09 4.2E-14 79.8 7.4 99 8-112 76-174 (263)
192 COG1041 Predicted DNA modifica 99.0 3.3E-09 7.2E-14 84.1 8.9 118 8-136 179-309 (347)
193 PF00891 Methyltransf_2: O-met 99.0 4.1E-09 8.9E-14 81.1 8.7 100 24-142 98-204 (241)
194 KOG3010 Methyltransferase [Gen 99.0 8E-10 1.7E-14 83.0 4.5 111 15-135 21-135 (261)
195 PRK00050 16S rRNA m(4)C1402 me 98.9 8.5E-09 1.9E-13 81.1 9.3 82 25-112 18-99 (296)
196 KOG2361 Predicted methyltransf 98.9 1.1E-09 2.3E-14 82.3 3.9 106 28-140 73-186 (264)
197 KOG2187 tRNA uracil-5-methyltr 98.9 1.5E-08 3.2E-13 83.7 9.6 127 3-135 356-488 (534)
198 PF05711 TylF: Macrocin-O-meth 98.9 1.4E-08 3.1E-13 77.8 8.5 153 7-184 51-239 (248)
199 PF12147 Methyltransf_20: Puta 98.9 6.7E-08 1.4E-12 74.9 12.1 122 17-144 126-256 (311)
200 PF05185 PRMT5: PRMT5 arginine 98.9 3.1E-08 6.8E-13 82.4 10.9 102 27-136 187-296 (448)
201 KOG0820 Ribosomal RNA adenine 98.8 4.2E-08 9E-13 75.1 10.0 96 5-112 37-132 (315)
202 TIGR02081 metW methionine bios 98.8 1.4E-08 3E-13 75.7 7.4 90 25-129 12-104 (194)
203 KOG1499 Protein arginine N-met 98.8 1.5E-08 3.2E-13 80.2 7.4 103 24-136 58-166 (346)
204 PF05219 DREV: DREV methyltran 98.8 2.6E-07 5.7E-12 70.6 13.3 133 26-180 94-237 (265)
205 PF06962 rRNA_methylase: Putat 98.8 2.5E-08 5.4E-13 69.7 7.1 111 53-181 1-123 (140)
206 PF03059 NAS: Nicotianamine sy 98.8 3.8E-08 8.3E-13 76.5 8.4 104 27-137 121-230 (276)
207 PRK04148 hypothetical protein; 98.8 9.8E-08 2.1E-12 66.3 9.3 98 14-128 4-102 (134)
208 PF03291 Pox_MCEL: mRNA cappin 98.7 8.6E-08 1.9E-12 76.9 8.7 107 26-136 62-185 (331)
209 KOG1709 Guanidinoacetate methy 98.6 4.5E-07 9.8E-12 67.3 10.2 107 25-140 100-209 (271)
210 PRK10742 putative methyltransf 98.6 3.9E-07 8.5E-12 69.6 9.5 88 16-112 76-173 (250)
211 PLN02232 ubiquinone biosynthes 98.6 9.9E-08 2.1E-12 69.0 6.0 78 55-139 1-83 (160)
212 KOG1541 Predicted protein carb 98.6 9.4E-08 2E-12 71.1 5.8 95 27-136 51-159 (270)
213 PF04816 DUF633: Family of unk 98.6 6.5E-07 1.4E-11 67.1 10.0 99 30-136 1-100 (205)
214 KOG1562 Spermidine synthase [A 98.6 7.3E-07 1.6E-11 69.1 10.1 149 24-192 119-282 (337)
215 KOG1500 Protein arginine N-met 98.6 3.5E-07 7.5E-12 72.2 8.2 110 13-134 165-279 (517)
216 KOG1122 tRNA and rRNA cytosine 98.6 3E-07 6.4E-12 74.4 7.8 113 21-139 236-373 (460)
217 TIGR00478 tly hemolysin TlyA f 98.5 1.9E-07 4.2E-12 71.0 6.0 92 26-135 75-169 (228)
218 COG4262 Predicted spermidine s 98.5 1.7E-06 3.7E-11 69.0 11.4 106 25-137 288-407 (508)
219 PF02005 TRM: N2,N2-dimethylgu 98.5 5.7E-07 1.2E-11 73.4 9.0 126 6-138 24-155 (377)
220 TIGR02987 met_A_Alw26 type II 98.5 2E-06 4.4E-11 73.5 11.9 105 5-112 4-121 (524)
221 PF00398 RrnaAD: Ribosomal RNA 98.5 1.2E-06 2.7E-11 68.3 9.4 124 4-137 8-134 (262)
222 PF01269 Fibrillarin: Fibrilla 98.5 1.4E-06 3.1E-11 65.2 9.2 106 24-136 71-177 (229)
223 PF08123 DOT1: Histone methyla 98.5 2.6E-06 5.7E-11 63.9 10.6 111 22-139 38-160 (205)
224 PF02384 N6_Mtase: N-6 DNA Met 98.5 7.5E-07 1.6E-11 71.1 7.9 122 9-135 29-181 (311)
225 COG0293 FtsJ 23S rRNA methylas 98.5 4.9E-06 1.1E-10 61.8 11.5 100 26-138 45-160 (205)
226 COG4076 Predicted RNA methylas 98.4 5.7E-07 1.2E-11 65.4 6.0 101 26-139 32-137 (252)
227 TIGR00006 S-adenosyl-methyltra 98.4 6.4E-06 1.4E-10 65.2 11.7 83 25-112 19-101 (305)
228 PF01728 FtsJ: FtsJ-like methy 98.4 1.3E-06 2.8E-11 64.3 7.4 99 26-136 23-138 (181)
229 KOG1975 mRNA cap methyltransfe 98.4 1.8E-06 4E-11 67.7 7.7 108 25-136 116-236 (389)
230 TIGR01444 fkbM_fam methyltrans 98.4 1.7E-06 3.6E-11 61.0 6.9 57 29-87 1-57 (143)
231 PF01739 CheR: CheR methyltran 98.4 6.2E-07 1.3E-11 66.8 4.8 105 26-137 31-175 (196)
232 PF05148 Methyltransf_8: Hypot 98.3 2.9E-06 6.2E-11 63.0 7.6 121 14-180 60-182 (219)
233 TIGR03439 methyl_EasF probable 98.3 1.2E-05 2.5E-10 64.3 11.4 108 26-135 76-195 (319)
234 PRK11783 rlmL 23S rRNA m(2)G24 98.3 5.8E-06 1.3E-10 72.9 10.6 82 26-112 190-312 (702)
235 PRK10611 chemotaxis methyltran 98.3 7.3E-07 1.6E-11 70.1 3.8 105 26-136 115-261 (287)
236 COG0116 Predicted N6-adenine-s 98.3 2.1E-05 4.6E-10 63.6 11.6 104 26-136 191-343 (381)
237 PF13679 Methyltransf_32: Meth 98.2 9.7E-06 2.1E-10 57.3 8.4 74 15-88 10-92 (141)
238 COG1867 TRM1 N2,N2-dimethylgua 98.2 1.9E-05 4.2E-10 63.2 10.8 124 6-138 32-155 (380)
239 COG3510 CmcI Cephalosporin hyd 98.2 5.2E-05 1.1E-09 55.5 12.0 126 12-144 55-187 (237)
240 KOG3115 Methyltransferase-like 98.2 8.8E-06 1.9E-10 60.0 7.7 105 27-136 61-182 (249)
241 COG2384 Predicted SAM-dependen 98.2 7.1E-05 1.5E-09 56.0 12.0 111 18-136 7-119 (226)
242 COG1352 CheR Methylase of chem 98.2 8.2E-06 1.8E-10 63.5 7.2 103 27-136 97-240 (268)
243 KOG3178 Hydroxyindole-O-methyl 98.1 2.5E-05 5.3E-10 62.3 9.0 97 27-141 178-279 (342)
244 PF01861 DUF43: Protein of unk 98.1 0.0002 4.4E-09 54.5 13.6 101 26-135 44-147 (243)
245 KOG3201 Uncharacterized conser 98.1 2.6E-05 5.7E-10 55.5 8.2 119 12-136 12-139 (201)
246 COG1889 NOP1 Fibrillarin-like 98.1 4.4E-05 9.4E-10 56.4 9.2 102 24-135 74-178 (231)
247 PF09243 Rsm22: Mitochondrial 98.0 4.4E-05 9.6E-10 59.9 9.1 113 15-136 19-139 (274)
248 PF05971 Methyltransf_10: Prot 98.0 1.4E-05 3.1E-10 62.9 6.3 80 28-112 104-186 (299)
249 PF03141 Methyltransf_29: Puta 98.0 3.8E-06 8.3E-11 69.7 2.9 98 28-139 119-221 (506)
250 COG0275 Predicted S-adenosylme 98.0 0.00011 2.4E-09 57.5 10.7 85 24-112 21-105 (314)
251 KOG3045 Predicted RNA methylas 97.9 3E-05 6.5E-10 59.3 6.0 96 15-139 169-266 (325)
252 PF01795 Methyltransf_5: MraW 97.9 6.5E-05 1.4E-09 59.5 7.4 85 24-112 18-102 (310)
253 PRK11760 putative 23S rRNA C24 97.9 0.00015 3.2E-09 58.1 9.3 87 25-130 210-296 (357)
254 COG3897 Predicted methyltransf 97.8 5.2E-05 1.1E-09 55.7 5.6 97 24-135 77-176 (218)
255 COG1189 Predicted rRNA methyla 97.8 0.00048 1E-08 52.3 10.9 113 10-135 60-176 (245)
256 KOG1253 tRNA methyltransferase 97.8 2.9E-05 6.2E-10 64.3 4.0 115 20-138 103-217 (525)
257 PRK01747 mnmC bifunctional tRN 97.7 0.00042 9E-09 61.1 11.2 104 27-136 58-205 (662)
258 PHA01634 hypothetical protein 97.7 0.00012 2.6E-09 50.0 5.7 74 26-112 28-101 (156)
259 KOG2352 Predicted spermine/spe 97.7 9.5E-05 2.1E-09 61.3 6.0 115 26-142 295-421 (482)
260 PF04445 SAM_MT: Putative SAM- 97.7 3.6E-05 7.9E-10 58.5 2.9 75 29-112 78-160 (234)
261 KOG2198 tRNA cytosine-5-methyl 97.6 0.00053 1.2E-08 55.1 8.4 118 22-140 151-299 (375)
262 COG0500 SmtA SAM-dependent met 97.6 0.001 2.3E-08 46.3 9.3 105 30-141 52-159 (257)
263 PF04672 Methyltransf_19: S-ad 97.5 0.0013 2.9E-08 51.0 9.7 126 13-139 51-192 (267)
264 KOG1269 SAM-dependent methyltr 97.5 0.00013 2.9E-09 59.2 4.3 105 25-138 109-216 (364)
265 COG4798 Predicted methyltransf 97.5 0.00024 5.2E-09 52.3 5.0 108 24-140 46-169 (238)
266 KOG1596 Fibrillarin and relate 97.5 0.0014 3E-08 49.9 9.1 102 24-136 154-260 (317)
267 PF07942 N2227: N2227-like pro 97.4 0.001 2.2E-08 51.9 8.3 108 27-142 57-207 (270)
268 PF07091 FmrO: Ribosomal RNA m 97.4 0.0079 1.7E-07 46.2 12.3 140 26-188 105-249 (251)
269 KOG2940 Predicted methyltransf 97.3 0.00026 5.6E-09 53.4 3.2 98 27-136 73-173 (325)
270 KOG4589 Cell division protein 97.3 0.0015 3.2E-08 47.9 6.9 103 25-142 68-187 (232)
271 KOG3987 Uncharacterized conser 97.2 3.6E-05 7.9E-10 57.0 -1.4 98 26-143 112-213 (288)
272 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.2 0.00055 1.2E-08 53.0 4.6 113 26-142 56-204 (256)
273 KOG2671 Putative RNA methylase 97.2 0.00083 1.8E-08 53.6 5.4 120 7-135 189-352 (421)
274 COG1063 Tdh Threonine dehydrog 97.2 0.0035 7.6E-08 51.0 9.3 102 26-139 168-271 (350)
275 COG2961 ComJ Protein involved 97.1 0.067 1.4E-06 41.1 14.4 140 6-173 69-213 (279)
276 COG5459 Predicted rRNA methyla 97.1 0.0009 1.9E-08 53.6 4.5 106 26-136 113-224 (484)
277 PF03141 Methyltransf_29: Puta 97.0 0.0021 4.6E-08 53.8 6.5 130 26-192 365-506 (506)
278 KOG1227 Putative methyltransfe 97.0 0.0003 6.5E-09 55.0 1.2 114 15-139 183-299 (351)
279 COG4301 Uncharacterized conser 97.0 0.031 6.7E-07 43.0 11.8 122 10-135 58-191 (321)
280 KOG0024 Sorbitol dehydrogenase 97.0 0.011 2.3E-07 47.1 9.7 106 24-137 167-273 (354)
281 COG0286 HsdM Type I restrictio 96.9 0.005 1.1E-07 52.3 8.2 131 10-142 170-334 (489)
282 KOG4058 Uncharacterized conser 96.9 0.0055 1.2E-07 43.3 6.6 115 10-136 57-171 (199)
283 COG1064 AdhP Zn-dependent alco 96.9 0.017 3.6E-07 46.6 10.2 97 24-139 164-261 (339)
284 PF04378 RsmJ: Ribosomal RNA s 96.8 0.01 2.2E-07 45.7 8.3 115 11-135 43-162 (245)
285 PF12692 Methyltransf_17: S-ad 96.8 0.054 1.2E-06 38.2 10.8 102 27-140 29-137 (160)
286 PF00107 ADH_zinc_N: Zinc-bind 96.7 0.0072 1.6E-07 41.5 6.4 91 36-139 1-91 (130)
287 COG3129 Predicted SAM-dependen 96.6 0.0027 5.9E-08 48.1 4.0 84 28-116 80-166 (292)
288 PF11968 DUF3321: Putative met 96.6 0.0038 8.1E-08 46.9 4.4 98 10-132 31-139 (219)
289 KOG1501 Arginine N-methyltrans 96.6 0.0055 1.2E-07 50.6 5.5 59 29-89 69-127 (636)
290 cd08283 FDH_like_1 Glutathione 96.4 0.043 9.3E-07 45.1 10.2 106 23-137 181-306 (386)
291 KOG1099 SAM-dependent methyltr 96.3 0.016 3.6E-07 43.9 6.5 97 27-136 42-162 (294)
292 PF05430 Methyltransf_30: S-ad 96.3 0.014 3.1E-07 40.2 5.6 52 79-136 32-89 (124)
293 PRK09880 L-idonate 5-dehydroge 96.2 0.048 1E-06 44.0 9.3 97 26-137 169-266 (343)
294 KOG2651 rRNA adenine N-6-methy 96.0 0.026 5.7E-07 45.9 6.6 53 14-68 141-193 (476)
295 PF02254 TrkA_N: TrkA-N domain 95.9 0.032 6.9E-07 37.5 6.1 89 35-136 4-95 (116)
296 PRK11524 putative methyltransf 95.9 0.022 4.8E-07 45.0 5.7 53 79-136 8-79 (284)
297 PRK13699 putative methylase; P 95.9 0.018 3.9E-07 44.0 5.0 51 80-135 2-70 (227)
298 KOG2793 Putative N2,N2-dimethy 95.8 0.047 1E-06 42.1 7.1 101 26-136 86-198 (248)
299 PRK09424 pntA NAD(P) transhydr 95.8 0.38 8.2E-06 41.2 13.1 106 25-139 163-287 (509)
300 PRK11524 putative methyltransf 95.7 0.055 1.2E-06 42.7 7.3 56 15-73 195-252 (284)
301 cd08254 hydroxyacyl_CoA_DH 6-h 95.6 0.19 4.1E-06 40.1 10.3 99 24-136 163-262 (338)
302 COG0686 Ald Alanine dehydrogen 95.5 0.19 4.1E-06 40.1 9.4 95 27-135 168-266 (371)
303 KOG1331 Predicted methyltransf 95.5 0.0091 2E-07 46.6 2.0 104 10-135 32-141 (293)
304 PF10237 N6-adenineMlase: Prob 95.4 0.63 1.4E-05 33.6 11.3 110 11-136 8-122 (162)
305 KOG0822 Protein kinase inhibit 95.4 0.036 7.8E-07 46.9 5.4 117 12-136 347-477 (649)
306 PF01555 N6_N4_Mtase: DNA meth 95.4 0.049 1.1E-06 40.9 5.9 52 15-69 178-231 (231)
307 PRK13699 putative methylase; P 95.4 0.096 2.1E-06 40.0 7.4 58 15-75 150-209 (227)
308 cd08281 liver_ADH_like1 Zinc-d 95.4 0.22 4.8E-06 40.7 10.0 102 24-138 189-291 (371)
309 cd08237 ribitol-5-phosphate_DH 95.3 0.21 4.6E-06 40.3 9.8 94 25-137 162-256 (341)
310 TIGR03451 mycoS_dep_FDH mycoth 95.3 0.26 5.5E-06 40.1 10.2 103 24-138 174-277 (358)
311 PLN03154 putative allyl alcoho 95.2 0.42 9.2E-06 38.7 11.2 100 24-137 156-258 (348)
312 cd08294 leukotriene_B4_DH_like 95.1 0.46 1E-05 37.7 11.1 100 22-136 139-240 (329)
313 cd08293 PTGR2 Prostaglandin re 95.1 0.45 9.9E-06 38.2 10.9 95 28-136 156-253 (345)
314 TIGR00027 mthyl_TIGR00027 meth 95.1 1.1 2.3E-05 35.1 12.5 110 27-139 82-199 (260)
315 PF05050 Methyltransf_21: Meth 95.0 0.059 1.3E-06 38.4 5.0 43 32-74 1-48 (167)
316 TIGR02825 B4_12hDH leukotriene 95.0 0.76 1.6E-05 36.6 11.8 101 22-137 134-237 (325)
317 COG1568 Predicted methyltransf 94.9 0.26 5.6E-06 38.7 8.5 102 26-135 152-258 (354)
318 cd00315 Cyt_C5_DNA_methylase C 94.9 0.046 1E-06 43.0 4.6 70 29-112 2-71 (275)
319 cd08295 double_bond_reductase_ 94.8 0.68 1.5E-05 37.2 11.3 100 23-136 148-250 (338)
320 PRK10309 galactitol-1-phosphat 94.7 0.5 1.1E-05 38.1 10.2 102 25-138 159-261 (347)
321 KOG2078 tRNA modification enzy 94.6 0.026 5.6E-07 46.5 2.5 65 25-92 248-313 (495)
322 TIGR00561 pntA NAD(P) transhyd 94.6 0.3 6.5E-06 41.8 8.9 101 26-135 163-282 (511)
323 cd05188 MDR Medium chain reduc 94.6 0.68 1.5E-05 35.3 10.4 99 25-137 133-232 (271)
324 PLN02740 Alcohol dehydrogenase 94.6 0.67 1.5E-05 38.0 10.8 102 23-137 195-300 (381)
325 PF02636 Methyltransf_28: Puta 94.5 0.057 1.2E-06 41.9 4.1 47 27-73 19-72 (252)
326 PF06859 Bin3: Bicoid-interact 94.4 0.043 9.4E-07 36.7 2.7 40 103-142 1-49 (110)
327 PLN02827 Alcohol dehydrogenase 94.4 0.62 1.3E-05 38.3 10.2 101 24-137 191-295 (378)
328 cd08239 THR_DH_like L-threonin 94.3 1 2.2E-05 36.1 11.1 100 24-137 161-262 (339)
329 TIGR00518 alaDH alanine dehydr 94.2 0.5 1.1E-05 38.9 9.3 96 26-135 166-265 (370)
330 PF03721 UDPG_MGDP_dh_N: UDP-g 94.2 1.7 3.6E-05 32.1 12.8 101 29-142 2-125 (185)
331 KOG2798 Putative trehalase [Ca 94.1 0.24 5.3E-06 39.5 6.8 38 102-139 258-298 (369)
332 cd08285 NADP_ADH NADP(H)-depen 94.0 0.82 1.8E-05 36.9 10.2 102 24-137 164-266 (351)
333 KOG2360 Proliferation-associat 93.9 0.056 1.2E-06 44.0 3.0 90 17-112 204-293 (413)
334 KOG2912 Predicted DNA methylas 93.9 0.13 2.8E-06 41.1 4.9 94 16-112 87-187 (419)
335 COG0604 Qor NADPH:quinone redu 93.8 1.2 2.6E-05 36.0 10.5 101 24-138 140-242 (326)
336 TIGR03366 HpnZ_proposed putati 93.7 1.5 3.3E-05 34.2 10.9 99 26-138 120-219 (280)
337 KOG1098 Putative SAM-dependent 93.6 0.22 4.8E-06 43.2 6.2 96 24-135 42-156 (780)
338 PF11599 AviRa: RRNA methyltra 93.6 0.073 1.6E-06 40.1 2.9 47 26-72 51-98 (246)
339 PF03686 UPF0146: Uncharacteri 93.5 0.78 1.7E-05 31.6 7.7 94 19-135 6-100 (127)
340 KOG2352 Predicted spermine/spe 93.5 0.36 7.8E-06 40.7 7.1 97 29-136 51-160 (482)
341 PF10354 DUF2431: Domain of un 93.5 0.5 1.1E-05 34.3 7.1 101 32-136 2-124 (166)
342 TIGR03201 dearomat_had 6-hydro 93.5 1.3 2.7E-05 35.9 10.3 105 25-138 165-273 (349)
343 cd05278 FDH_like Formaldehyde 93.4 1 2.2E-05 36.1 9.6 101 24-136 165-266 (347)
344 TIGR02818 adh_III_F_hyde S-(hy 93.2 2.2 4.9E-05 34.8 11.4 101 24-137 183-287 (368)
345 cd08230 glucose_DH Glucose deh 93.1 0.92 2E-05 36.7 9.0 96 25-138 171-270 (355)
346 PF01210 NAD_Gly3P_dh_N: NAD-d 92.9 0.55 1.2E-05 33.6 6.6 95 29-135 1-101 (157)
347 cd08300 alcohol_DH_class_III c 92.8 2.8 6.1E-05 34.1 11.5 102 24-138 184-289 (368)
348 PF01053 Cys_Met_Meta_PP: Cys/ 92.8 4.3 9.4E-05 33.6 12.5 122 11-139 54-180 (386)
349 COG1062 AdhC Zn-dependent alco 92.7 1.9 4E-05 35.0 9.8 104 24-140 183-288 (366)
350 TIGR01202 bchC 2-desacetyl-2-h 92.5 0.76 1.7E-05 36.5 7.7 87 26-137 144-231 (308)
351 cd08238 sorbose_phosphate_red 92.5 1 2.2E-05 37.4 8.7 102 25-135 174-286 (410)
352 COG1565 Uncharacterized conser 92.4 0.54 1.2E-05 38.2 6.5 48 27-74 78-132 (370)
353 PF03807 F420_oxidored: NADP o 92.4 0.43 9.4E-06 30.8 5.1 86 30-135 2-92 (96)
354 COG0677 WecC UDP-N-acetyl-D-ma 92.4 1.4 3E-05 36.5 8.8 106 28-143 10-134 (436)
355 PRK05708 2-dehydropantoate 2-r 92.4 0.91 2E-05 36.2 7.8 98 28-135 3-102 (305)
356 cd08261 Zn_ADH7 Alcohol dehydr 92.1 3 6.5E-05 33.3 10.7 101 23-136 156-257 (337)
357 TIGR02356 adenyl_thiF thiazole 92.1 3 6.5E-05 31.1 9.9 81 25-112 19-120 (202)
358 TIGR02822 adh_fam_2 zinc-bindi 91.7 2.5 5.4E-05 33.9 9.8 92 24-138 163-255 (329)
359 cd08233 butanediol_DH_like (2R 91.7 3.9 8.5E-05 32.9 11.0 101 24-137 170-272 (351)
360 cd08278 benzyl_alcohol_DH Benz 91.7 2.7 5.8E-05 34.2 10.1 100 24-136 184-284 (365)
361 PRK09422 ethanol-active dehydr 91.6 3 6.4E-05 33.3 10.1 99 24-136 160-260 (338)
362 TIGR02819 fdhA_non_GSH formald 91.6 2.5 5.5E-05 35.0 9.9 105 24-138 183-300 (393)
363 COG0270 Dcm Site-specific DNA 91.6 1.2 2.6E-05 35.9 7.8 99 27-139 3-118 (328)
364 PRK12475 thiamine/molybdopteri 91.5 3.6 7.9E-05 33.4 10.5 79 26-112 23-125 (338)
365 PRK15001 SAM-dependent 23S rib 91.5 1.6 3.5E-05 36.0 8.5 109 13-137 31-142 (378)
366 PF05206 TRM13: Methyltransfer 91.5 1 2.2E-05 35.2 7.0 73 16-89 5-84 (259)
367 cd08286 FDH_like_ADH2 formalde 91.3 4.1 9E-05 32.6 10.8 101 24-136 164-265 (345)
368 PF00899 ThiF: ThiF family; I 91.3 2.7 5.9E-05 29.0 8.5 79 27-113 2-102 (135)
369 PF00145 DNA_methylase: C-5 cy 91.3 1.2 2.6E-05 35.4 7.5 94 29-139 2-112 (335)
370 PF03269 DUF268: Caenorhabditi 91.2 1.7 3.8E-05 31.3 7.3 94 27-137 2-111 (177)
371 cd08301 alcohol_DH_plants Plan 91.2 3.7 8.1E-05 33.4 10.5 103 23-138 184-290 (369)
372 cd08277 liver_alcohol_DH_like 91.1 4 8.7E-05 33.2 10.6 102 24-138 182-287 (365)
373 COG1748 LYS9 Saccharopine dehy 91.1 1.1 2.5E-05 37.0 7.2 85 28-124 2-89 (389)
374 TIGR00692 tdh L-threonine 3-de 91.0 6.6 0.00014 31.4 11.7 99 25-136 160-260 (340)
375 COG1255 Uncharacterized protei 91.0 3.6 7.8E-05 27.9 8.6 89 20-129 7-96 (129)
376 cd08263 Zn_ADH10 Alcohol dehyd 90.9 4.5 9.7E-05 32.9 10.7 100 25-136 186-286 (367)
377 KOG3924 Putative protein methy 90.8 2.5 5.3E-05 34.9 8.7 110 24-140 190-311 (419)
378 KOG0821 Predicted ribosomal RN 90.8 0.51 1.1E-05 35.9 4.5 59 27-89 51-109 (326)
379 PLN02586 probable cinnamyl alc 90.7 7.4 0.00016 31.7 11.7 96 25-137 182-278 (360)
380 cd01492 Aos1_SUMO Ubiquitin ac 90.6 4.4 9.5E-05 30.2 9.5 80 26-113 20-120 (197)
381 PRK11064 wecC UDP-N-acetyl-D-m 90.6 9.3 0.0002 32.0 12.4 105 28-142 4-124 (415)
382 KOG0780 Signal recognition par 90.5 4.8 0.0001 33.4 10.0 107 28-139 102-224 (483)
383 cd00757 ThiF_MoeB_HesA_family 90.2 6.8 0.00015 29.8 10.8 80 26-112 20-120 (228)
384 PRK07810 O-succinylhomoserine 90.2 7.4 0.00016 32.4 11.4 124 10-140 68-195 (403)
385 cd05285 sorbitol_DH Sorbitol d 90.1 6.1 0.00013 31.7 10.7 100 24-136 160-264 (343)
386 cd08265 Zn_ADH3 Alcohol dehydr 90.1 4.3 9.2E-05 33.3 9.9 101 25-136 202-306 (384)
387 PF02558 ApbA: Ketopantoate re 90.0 5 0.00011 28.0 9.6 34 102-135 66-99 (151)
388 cd05281 TDH Threonine dehydrog 89.9 8.8 0.00019 30.7 11.5 99 25-136 162-261 (341)
389 cd08232 idonate-5-DH L-idonate 89.9 2.8 6E-05 33.5 8.5 96 26-136 165-261 (339)
390 PRK08114 cystathionine beta-ly 89.7 11 0.00023 31.5 14.5 127 10-143 60-192 (395)
391 cd01488 Uba3_RUB Ubiquitin act 89.6 4.3 9.2E-05 32.3 9.1 77 29-112 1-97 (291)
392 PLN02353 probable UDP-glucose 89.6 5.6 0.00012 34.0 10.3 102 29-142 3-132 (473)
393 PRK05600 thiamine biosynthesis 89.6 11 0.00023 31.2 11.7 80 26-112 40-140 (370)
394 PRK07502 cyclohexadienyl dehyd 89.5 2.6 5.7E-05 33.5 8.0 88 28-134 7-97 (307)
395 cd05279 Zn_ADH1 Liver alcohol 89.4 6.5 0.00014 32.0 10.4 100 24-136 181-284 (365)
396 PRK06940 short chain dehydroge 89.4 5 0.00011 31.2 9.4 81 28-112 3-85 (275)
397 cd01484 E1-2_like Ubiquitin ac 89.3 5.7 0.00012 30.5 9.4 77 29-112 1-100 (234)
398 COG3315 O-Methyltransferase in 89.2 7.9 0.00017 30.9 10.4 109 27-138 93-210 (297)
399 PF01262 AlaDh_PNT_C: Alanine 89.1 0.54 1.2E-05 34.0 3.5 44 24-69 17-61 (168)
400 PRK03659 glutathione-regulated 89.0 1.7 3.6E-05 38.2 7.0 93 28-135 401-496 (601)
401 PF11312 DUF3115: Protein of u 89.0 1.7 3.7E-05 34.7 6.4 114 28-144 88-247 (315)
402 cd05286 QOR2 Quinone oxidoredu 88.9 9 0.00019 29.7 10.7 97 22-135 132-233 (320)
403 PRK12439 NAD(P)H-dependent gly 88.9 2.5 5.4E-05 34.3 7.6 96 26-134 6-108 (341)
404 PRK08293 3-hydroxybutyryl-CoA 88.8 5.4 0.00012 31.5 9.2 96 28-135 4-118 (287)
405 KOG0022 Alcohol dehydrogenase, 88.7 6.9 0.00015 31.6 9.5 108 22-142 188-299 (375)
406 PRK10669 putative cation:proto 88.7 1.6 3.4E-05 38.0 6.6 94 28-136 418-514 (558)
407 cd08296 CAD_like Cinnamyl alco 88.6 8.3 0.00018 30.8 10.4 97 24-136 161-258 (333)
408 PRK15182 Vi polysaccharide bio 88.6 3.7 8.1E-05 34.5 8.6 103 26-142 5-125 (425)
409 cd05288 PGDH Prostaglandin deh 88.6 7.4 0.00016 30.8 10.1 98 25-136 144-243 (329)
410 TIGR00675 dcm DNA-methyltransf 88.5 1.4 3E-05 35.4 5.8 66 30-111 1-67 (315)
411 KOG1201 Hydroxysteroid 17-beta 88.4 9.2 0.0002 30.5 10.0 81 26-112 37-123 (300)
412 PRK07688 thiamine/molybdopteri 88.3 11 0.00023 30.7 10.8 79 26-112 23-125 (339)
413 cd08231 MDR_TM0436_like Hypoth 88.3 8.7 0.00019 31.0 10.4 99 26-136 177-279 (361)
414 PRK08574 cystathionine gamma-s 88.2 9.7 0.00021 31.5 10.7 120 12-139 53-176 (385)
415 PRK06249 2-dehydropantoate 2-r 88.2 2.1 4.6E-05 34.2 6.6 34 102-135 71-104 (313)
416 PRK07417 arogenate dehydrogena 88.1 3.7 8E-05 32.2 7.9 85 29-133 2-87 (279)
417 cd08255 2-desacetyl-2-hydroxye 88.1 8 0.00017 29.8 9.8 92 24-135 95-188 (277)
418 PF02153 PDH: Prephenate dehyd 88.1 1.1 2.3E-05 34.9 4.8 75 41-134 2-76 (258)
419 cd08279 Zn_ADH_class_III Class 88.0 6 0.00013 32.1 9.3 101 24-136 180-281 (363)
420 cd08266 Zn_ADH_like1 Alcohol d 88.0 7.4 0.00016 30.7 9.7 99 24-136 164-264 (342)
421 PRK15057 UDP-glucose 6-dehydro 87.9 5.3 0.00012 33.1 9.0 100 30-142 3-122 (388)
422 cd08291 ETR_like_1 2-enoyl thi 87.9 10 0.00023 30.0 10.5 98 26-137 142-242 (324)
423 PRK05396 tdh L-threonine 3-deh 87.9 12 0.00027 29.8 11.0 100 26-137 163-263 (341)
424 PRK07671 cystathionine beta-ly 87.8 12 0.00026 30.8 11.0 121 10-139 48-173 (377)
425 cd08236 sugar_DH NAD(P)-depend 87.8 11 0.00023 30.1 10.6 99 24-136 157-257 (343)
426 PRK12921 2-dehydropantoate 2-r 87.7 3 6.4E-05 33.0 7.2 34 102-135 67-100 (305)
427 PRK08248 O-acetylhomoserine am 87.7 14 0.0003 31.2 11.4 123 10-139 62-188 (431)
428 COG0287 TyrA Prephenate dehydr 87.6 3.6 7.7E-05 32.5 7.4 32 102-133 63-94 (279)
429 TIGR00497 hsdM type I restrict 87.6 14 0.0003 31.8 11.5 120 10-134 199-352 (501)
430 PRK09496 trkA potassium transp 87.5 6.4 0.00014 33.0 9.5 93 29-135 2-97 (453)
431 PRK10083 putative oxidoreducta 87.5 8.3 0.00018 30.8 9.8 99 24-136 158-258 (339)
432 PRK03562 glutathione-regulated 87.5 1.9 4.1E-05 38.0 6.4 93 28-135 401-496 (621)
433 PRK08064 cystathionine beta-ly 87.4 13 0.00029 30.7 11.1 121 11-139 53-177 (390)
434 PRK08762 molybdopterin biosynt 87.3 8.9 0.00019 31.6 9.9 80 26-112 134-234 (376)
435 PRK05939 hypothetical protein; 87.3 16 0.00034 30.4 13.0 122 10-139 45-170 (397)
436 PRK05690 molybdopterin biosynt 87.2 12 0.00026 28.9 10.3 80 26-112 31-131 (245)
437 COG1893 ApbA Ketopantoate redu 87.2 3.7 8.1E-05 32.9 7.4 35 101-135 65-99 (307)
438 PF07757 AdoMet_MTase: Predict 87.1 0.62 1.3E-05 31.2 2.4 32 27-61 59-90 (112)
439 cd00401 AdoHcyase S-adenosyl-L 87.1 8.3 0.00018 32.3 9.6 86 26-136 201-288 (413)
440 PF01408 GFO_IDH_MocA: Oxidore 87.1 6.9 0.00015 26.0 8.8 91 29-138 2-94 (120)
441 PTZ00357 methyltransferase; Pr 87.1 3.2 6.9E-05 37.0 7.3 104 29-132 703-830 (1072)
442 PRK05786 fabG 3-ketoacyl-(acyl 87.0 11 0.00023 28.3 10.9 82 26-111 4-89 (238)
443 PF07015 VirC1: VirC1 protein; 87.0 1.9 4.1E-05 33.0 5.4 75 36-111 12-91 (231)
444 PRK06234 methionine gamma-lyas 86.9 15 0.00033 30.5 11.2 124 11-142 63-193 (400)
445 cd05213 NAD_bind_Glutamyl_tRNA 86.8 15 0.00032 29.5 13.2 97 25-139 176-274 (311)
446 PRK09496 trkA potassium transp 86.8 6.8 0.00015 32.9 9.2 95 27-134 231-328 (453)
447 PRK07066 3-hydroxybutyryl-CoA 86.7 8.7 0.00019 31.0 9.3 95 27-135 7-117 (321)
448 KOG0781 Signal recognition par 86.6 7.9 0.00017 33.0 9.1 118 40-174 398-527 (587)
449 PRK08324 short chain dehydroge 86.4 13 0.00027 33.3 11.0 79 27-112 422-507 (681)
450 PRK06522 2-dehydropantoate 2-r 86.4 8.4 0.00018 30.3 9.1 92 29-135 2-98 (304)
451 PTZ00354 alcohol dehydrogenase 86.3 13 0.00028 29.3 10.3 99 24-136 138-239 (334)
452 PLN02514 cinnamyl-alcohol dehy 86.2 17 0.00036 29.5 11.3 96 26-138 180-276 (357)
453 PRK05967 cystathionine beta-ly 86.0 19 0.00041 30.0 12.9 121 11-138 63-187 (395)
454 cd08234 threonine_DH_like L-th 86.0 9.9 0.00021 30.2 9.4 97 24-136 157-256 (334)
455 PRK09028 cystathionine beta-ly 85.9 19 0.00041 30.0 12.3 119 16-141 65-187 (394)
456 PRK07877 hypothetical protein; 85.8 11 0.00023 34.1 10.1 80 26-112 106-205 (722)
457 PRK06130 3-hydroxybutyryl-CoA 85.7 12 0.00026 29.7 9.8 93 28-134 5-112 (311)
458 TIGR02355 moeB molybdopterin s 85.7 14 0.00031 28.4 10.2 88 26-120 23-131 (240)
459 PRK08328 hypothetical protein; 85.6 13 0.00029 28.3 9.5 35 26-61 26-61 (231)
460 cd08297 CAD3 Cinnamyl alcohol 85.6 11 0.00025 30.0 9.7 100 24-136 163-264 (341)
461 PRK08655 prephenate dehydrogen 85.6 5.2 0.00011 33.8 7.8 87 29-134 2-89 (437)
462 TIGR00853 pts-lac PTS system, 85.6 7.5 0.00016 25.3 7.0 71 28-130 4-74 (95)
463 cd08240 6_hydroxyhexanoate_dh_ 85.5 17 0.00037 29.1 10.7 95 26-136 175-273 (350)
464 PF12242 Eno-Rase_NADH_b: NAD( 85.3 3.1 6.6E-05 26.0 4.7 35 25-59 37-72 (78)
465 KOG2920 Predicted methyltransf 85.2 0.8 1.7E-05 36.0 2.6 39 24-64 114-152 (282)
466 COG5379 BtaA S-adenosylmethion 85.1 3.1 6.6E-05 33.2 5.7 47 24-73 61-107 (414)
467 KOG2539 Mitochondrial/chloropl 85.0 0.73 1.6E-05 38.7 2.4 103 26-135 200-313 (491)
468 PRK05597 molybdopterin biosynt 85.0 15 0.00033 30.0 10.1 80 26-112 27-127 (355)
469 TIGR01324 cysta_beta_ly_B cyst 84.8 21 0.00045 29.5 13.6 125 12-143 50-178 (377)
470 PF03446 NAD_binding_2: NAD bi 84.7 12 0.00026 26.7 10.0 117 29-186 3-123 (163)
471 COG1004 Ugd Predicted UDP-gluc 84.6 22 0.00048 29.6 10.9 100 29-142 2-125 (414)
472 PRK07582 cystathionine gamma-l 84.5 19 0.00041 29.5 10.5 118 11-139 50-171 (366)
473 TIGR01328 met_gam_lyase methio 84.3 22 0.00049 29.4 11.1 124 10-140 57-184 (391)
474 cd08290 ETR 2-enoyl thioester 84.2 19 0.00042 28.6 11.2 102 24-136 144-250 (341)
475 PF11899 DUF3419: Protein of u 84.1 5.2 0.00011 33.1 7.0 59 78-141 275-338 (380)
476 COG4121 Uncharacterized conser 84.0 3.6 7.9E-05 31.9 5.7 106 27-136 59-207 (252)
477 cd01487 E1_ThiF_like E1_ThiF_l 83.3 15 0.00033 26.7 9.6 76 29-112 1-97 (174)
478 PRK07811 cystathionine gamma-s 83.2 13 0.00028 30.7 9.1 122 11-140 60-186 (388)
479 COG0541 Ffh Signal recognition 83.1 27 0.00059 29.5 11.4 128 26-170 99-239 (451)
480 PRK08223 hypothetical protein; 83.0 22 0.00047 28.3 9.9 78 26-112 26-125 (287)
481 PRK08045 cystathionine gamma-s 82.8 26 0.00056 29.0 11.6 124 10-141 50-178 (386)
482 cd08235 iditol_2_DH_like L-idi 82.7 22 0.00048 28.3 10.2 98 24-137 163-265 (343)
483 cd05282 ETR_like 2-enoyl thioe 82.5 22 0.00047 27.9 10.3 98 24-135 136-235 (323)
484 cd08243 quinone_oxidoreductase 82.5 21 0.00046 27.8 11.8 96 24-136 140-237 (320)
485 cd08260 Zn_ADH6 Alcohol dehydr 82.4 23 0.0005 28.3 10.6 99 24-136 163-263 (345)
486 cd08276 MDR7 Medium chain dehy 82.4 20 0.00044 28.2 9.8 99 24-136 158-258 (336)
487 PRK08644 thiamine biosynthesis 82.3 19 0.00041 27.1 10.7 93 26-126 27-141 (212)
488 PLN02702 L-idonate 5-dehydroge 82.2 23 0.0005 28.6 10.2 102 25-136 180-284 (364)
489 PF11899 DUF3419: Protein of u 82.1 4.7 0.0001 33.4 6.1 50 16-68 25-74 (380)
490 PRK06176 cystathionine gamma-s 82.1 27 0.00059 28.8 11.4 122 10-139 48-173 (380)
491 KOG0023 Alcohol dehydrogenase, 82.0 9.3 0.0002 30.9 7.3 100 26-139 181-281 (360)
492 cd05284 arabinose_DH_like D-ar 82.0 24 0.00052 28.1 10.9 99 25-136 166-265 (340)
493 cd08256 Zn_ADH2 Alcohol dehydr 82.0 17 0.00036 29.2 9.2 100 25-136 173-273 (350)
494 COG4017 Uncharacterized protei 81.7 3.4 7.4E-05 30.8 4.5 38 24-64 42-80 (254)
495 PRK07063 short chain dehydroge 81.7 21 0.00045 27.2 9.5 85 26-111 6-94 (260)
496 PRK08507 prephenate dehydrogen 81.6 4.5 9.7E-05 31.7 5.6 84 29-134 2-88 (275)
497 PF02826 2-Hacid_dh_C: D-isome 81.6 10 0.00022 27.6 7.1 88 26-135 35-125 (178)
498 cd01483 E1_enzyme_family Super 81.6 15 0.00032 25.5 9.8 78 29-113 1-99 (143)
499 PRK06153 hypothetical protein; 81.6 30 0.00064 28.9 10.9 97 23-129 172-293 (393)
500 PRK07411 hypothetical protein; 81.5 23 0.00049 29.5 9.9 96 26-129 37-155 (390)
No 1
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=100.00 E-value=1.4e-39 Score=242.68 Aligned_cols=182 Identities=44% Similarity=0.791 Sum_probs=162.7
Q ss_pred cccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe
Q 029414 5 RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE 84 (194)
Q Consensus 5 ~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~ 84 (194)
++.|++++.++++|..+++..++++||||||++|++++++|+.++++++++++|.+++..+.|+++++.+++.++++++.
T Consensus 24 ~~~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~ 103 (205)
T PF01596_consen 24 LPQMSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIE 103 (205)
T ss_dssp TGGGSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEE
T ss_pred CCCCccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 46788999999999999999999999999999999999999999888999999999999999999999999988999999
Q ss_pred cchHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHH
Q 029414 85 SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAIL 164 (194)
Q Consensus 85 ~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 164 (194)
+|+.+.++.+..+ ...++||+||+|+.+.+|..+++.+.++|+|||+|+++|++|+|.+..+....+ ....++
T Consensus 104 gda~~~l~~l~~~-~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~------~~~~ir 176 (205)
T PF01596_consen 104 GDALEVLPELAND-GEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDP------KTVAIR 176 (205)
T ss_dssp S-HHHHHHHHHHT-TTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSH------HHHHHH
T ss_pred eccHhhHHHHHhc-cCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEccccccceecCccchhh------hHHHHH
Confidence 9999999887543 112589999999999999999999999999999999999999999988743211 445599
Q ss_pred HHHHHhhcCCCeEEEeeecCCeeEEEEEc
Q 029414 165 DLNRSLADDPRVQLSHVALGDGITICRRI 193 (194)
Q Consensus 165 ~~~~~l~~~~~~~~~~~p~~~G~~i~~~~ 193 (194)
+|++++.++|+|+++++|+|+|+.|+|||
T Consensus 177 ~f~~~i~~d~~~~~~llpigdGl~l~~K~ 205 (205)
T PF01596_consen 177 EFNEYIANDPRFETVLLPIGDGLTLARKR 205 (205)
T ss_dssp HHHHHHHH-TTEEEEEECSTTEEEEEEE-
T ss_pred HHHHHHHhCCCeeEEEEEeCCeeEEEEEC
Confidence 99999999999999999999999999996
No 2
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=100.00 E-value=2.2e-37 Score=236.45 Aligned_cols=187 Identities=57% Similarity=1.011 Sum_probs=165.8
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414 6 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 85 (194)
Q Consensus 6 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 85 (194)
+.+.+++.++++|..+++..++++|||||+++|++++++|..++++++++++|.+++..+.|+++++.+|+.++++++.|
T Consensus 59 ~~~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G 138 (247)
T PLN02589 59 NIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREG 138 (247)
T ss_pred CCCccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEec
Confidence 56788999999999999999999999999999999999999998789999999999999999999999999999999999
Q ss_pred chHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCC-cccchHHHHH
Q 029414 86 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDH-FRGSSRQAIL 164 (194)
Q Consensus 86 d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~ 164 (194)
++.+.++.+.......++||+||+|+++..|..+++.+.++|+|||+|+++|++|+|.+.++....++. .+. .+.+++
T Consensus 139 ~a~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~-~~~~ir 217 (247)
T PLN02589 139 PALPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRY-YRDFVL 217 (247)
T ss_pred cHHHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHH-HHHHHH
Confidence 999999887432111268999999999999999999999999999999999999999988774322111 122 344689
Q ss_pred HHHHHhhcCCCeEEEeeecCCeeEEEEEc
Q 029414 165 DLNRSLADDPRVQLSHVALGDGITICRRI 193 (194)
Q Consensus 165 ~~~~~l~~~~~~~~~~~p~~~G~~i~~~~ 193 (194)
+|++.+.++|+|+++++|+|+|++|++|+
T Consensus 218 ~fn~~v~~d~~~~~~llPigDGl~l~~k~ 246 (247)
T PLN02589 218 ELNKALAADPRIEICMLPVGDGITLCRRI 246 (247)
T ss_pred HHHHHHHhCCCEEEEEEEeCCccEEEEEe
Confidence 99999999999999999999999999997
No 3
>PLN02476 O-methyltransferase
Probab=100.00 E-value=2.3e-36 Score=233.42 Aligned_cols=181 Identities=41% Similarity=0.714 Sum_probs=164.3
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414 6 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 85 (194)
Q Consensus 6 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 85 (194)
+.+.+++.++++|..+++..++++||||||++|++++++|..++++++++++|.+++.++.|+++++.+|+.++++++.+
T Consensus 98 ~~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~G 177 (278)
T PLN02476 98 SQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHG 177 (278)
T ss_pred CccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc
Confidence 46789999999999999999999999999999999999999998789999999999999999999999999989999999
Q ss_pred chHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHH
Q 029414 86 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILD 165 (194)
Q Consensus 86 d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 165 (194)
|+.+.++.+..+ ...++||+||+|+++..+..+++.+.++|+|||+|+++|++|+|.+.++.... . .+.++++
T Consensus 178 dA~e~L~~l~~~-~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d-~-----~t~~ir~ 250 (278)
T PLN02476 178 LAAESLKSMIQN-GEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVND-A-----KTISIRN 250 (278)
T ss_pred CHHHHHHHHHhc-ccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCC-H-----HHHHHHH
Confidence 999998876322 11358999999999999999999999999999999999999999988774322 1 3457999
Q ss_pred HHHHhhcCCCeEEEeeecCCeeEEEEEc
Q 029414 166 LNRSLADDPRVQLSHVALGDGITICRRI 193 (194)
Q Consensus 166 ~~~~l~~~~~~~~~~~p~~~G~~i~~~~ 193 (194)
|++++.++|+|+++++|+|||++|++|+
T Consensus 251 fn~~v~~d~~~~~~llPigDGl~i~~K~ 278 (278)
T PLN02476 251 FNKKLMDDKRVSISMVPIGDGMTICRKR 278 (278)
T ss_pred HHHHHhhCCCEEEEEEEeCCeeEEEEEC
Confidence 9999999999999999999999999985
No 4
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=100.00 E-value=2e-36 Score=225.65 Aligned_cols=177 Identities=41% Similarity=0.680 Sum_probs=160.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe-cch
Q 029414 9 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEA 87 (194)
Q Consensus 9 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~ 87 (194)
...++++++|..+++..++++|||||++.|+|++|||..++++++++++|.+++..+.|++++++.++.++++++. +|+
T Consensus 42 i~~~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gda 121 (219)
T COG4122 42 IIDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDA 121 (219)
T ss_pred CCChhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcH
Confidence 3449999999999999999999999999999999999999888999999999999999999999999998899988 699
Q ss_pred HHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHHHH
Q 029414 88 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN 167 (194)
Q Consensus 88 ~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (194)
.+.+... ..++||+||+|+++.+|..+++.+.++|+|||+|+++|++++|.+..+.. +..+. ....+++|+
T Consensus 122 l~~l~~~-----~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~---~~~~~-~~~~~~~~~ 192 (219)
T COG4122 122 LDVLSRL-----LDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSI---RDART-QVRGVRDFN 192 (219)
T ss_pred HHHHHhc-----cCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccc---hhHHH-HHHHHHHHH
Confidence 9988762 15899999999999999999999999999999999999999998877743 22333 566699999
Q ss_pred HHhhcCCCeEEEeeecCCeeEEEEEcC
Q 029414 168 RSLADDPRVQLSHVALGDGITICRRIF 194 (194)
Q Consensus 168 ~~l~~~~~~~~~~~p~~~G~~i~~~~~ 194 (194)
+++.++|+++++++|+|+|+++++|++
T Consensus 193 ~~~~~~~~~~t~~lP~gDGl~v~~k~~ 219 (219)
T COG4122 193 DYLLEDPRYDTVLLPLGDGLLLSRKRG 219 (219)
T ss_pred HHHhhCcCceeEEEecCCceEEEeecC
Confidence 999999999999999999999999975
No 5
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=100.00 E-value=5.6e-36 Score=228.75 Aligned_cols=186 Identities=60% Similarity=1.040 Sum_probs=167.2
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414 6 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 85 (194)
Q Consensus 6 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 85 (194)
+.+++.+..+++|..+++..++++|||+|||+|+++++++..++++++++++|.+++.++.|+++++.+++.++++++.+
T Consensus 48 ~~~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~g 127 (234)
T PLN02781 48 SEMEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQS 127 (234)
T ss_pred cccccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc
Confidence 45688999999999999999999999999999999999999987789999999999999999999999999889999999
Q ss_pred chHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHH
Q 029414 86 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILD 165 (194)
Q Consensus 86 d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 165 (194)
|+.+.++.+..+ ...++||+||+|+.++.+..+++.+.++|+|||+|+++|++|+|.+.++....+++.+. ....+++
T Consensus 128 da~~~L~~l~~~-~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~-~~~~ir~ 205 (234)
T PLN02781 128 DALSALDQLLNN-DPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRA-YRKALLE 205 (234)
T ss_pred cHHHHHHHHHhC-CCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhH-HHHHHHH
Confidence 999988775321 11358999999999999999999999999999999999999999998876544444444 6678999
Q ss_pred HHHHhhcCCCeEEEeeecCCeeEEEEEc
Q 029414 166 LNRSLADDPRVQLSHVALGDGITICRRI 193 (194)
Q Consensus 166 ~~~~l~~~~~~~~~~~p~~~G~~i~~~~ 193 (194)
|++++.++|+++++++|+|+|++|++|+
T Consensus 206 ~~~~i~~~~~~~~~~lp~gdG~~i~~k~ 233 (234)
T PLN02781 206 FNKLLASDPRVEISQISIGDGVTLCRRL 233 (234)
T ss_pred HHHHHhhCCCeEEEEEEeCCccEEEEEe
Confidence 9999999999999999999999999986
No 6
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.7e-34 Score=210.55 Aligned_cols=186 Identities=57% Similarity=0.965 Sum_probs=168.4
Q ss_pred cccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe
Q 029414 5 RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE 84 (194)
Q Consensus 5 ~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~ 84 (194)
+..|.++++.++++.++++..+++++||+|+.+|++++.+|..+|++++|+++|++++.++.+.+..+..++...+++++
T Consensus 52 ~~~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~ 131 (237)
T KOG1663|consen 52 GSEMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIE 131 (237)
T ss_pred ccceecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeee
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHH
Q 029414 85 SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAIL 164 (194)
Q Consensus 85 ~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 164 (194)
+++.+.++++... .+.+.||++|+|+++.+|..+++++.+++|+||+|+++|++|+|.+.++....+.+.+. .+.. -
T Consensus 132 g~a~esLd~l~~~-~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G~v~~p~~~~~~~~~~-~r~~-~ 208 (237)
T KOG1663|consen 132 GPALESLDELLAD-GESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVDNVLWPGVVADPDVNTPVRGRS-IREA-L 208 (237)
T ss_pred cchhhhHHHHHhc-CCCCceeEEEEccchHHHHHHHHHHHhhcccccEEEEeccccCCcccCcccCCCcchhh-hhhh-h
Confidence 9999999887554 24578999999999999999999999999999999999999999777776655555554 2222 3
Q ss_pred HHHHHhhcCCCeEEEeeecCCeeEEEEEc
Q 029414 165 DLNRSLADDPRVQLSHVALGDGITICRRI 193 (194)
Q Consensus 165 ~~~~~l~~~~~~~~~~~p~~~G~~i~~~~ 193 (194)
+++++|..+|++..+.+|+|+|+++|+|+
T Consensus 209 ~~n~~l~~D~rV~~s~~~igdG~~i~~k~ 237 (237)
T KOG1663|consen 209 NLNKKLARDPRVYISLLPIGDGITICRKR 237 (237)
T ss_pred hhhhHhccCcceeeEeeeccCceeeeccC
Confidence 99999999999999999999999999985
No 7
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.82 E-value=1.1e-18 Score=126.16 Aligned_cols=121 Identities=27% Similarity=0.282 Sum_probs=108.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414 9 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 88 (194)
Q Consensus 9 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 88 (194)
.+.++...+.-..++..++.+++|||||+|..++.++...+ .++++++|.++++++..++|.++++++ |++++.+++.
T Consensus 17 ~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p-~~~v~AIe~~~~a~~~~~~N~~~fg~~-n~~vv~g~Ap 94 (187)
T COG2242 17 MTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGP-SGRVIAIERDEEALELIERNAARFGVD-NLEVVEGDAP 94 (187)
T ss_pred CcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCC-cEEEEeccch
Confidence 56777777777777788899999999999999999996555 999999999999999999999999965 9999999999
Q ss_pred HHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEeccc
Q 029414 89 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 139 (194)
Q Consensus 89 ~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 139 (194)
+.++.+ .+||.||+.+. ......++.++..|||||.||++.+.
T Consensus 95 ~~L~~~-------~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 95 EALPDL-------PSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred HhhcCC-------CCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 988764 48999999988 78889999999999999999998655
No 8
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.79 E-value=9.1e-19 Score=119.10 Aligned_cols=104 Identities=23% Similarity=0.388 Sum_probs=87.5
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 105 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD 105 (194)
++.+|||+|||+|..+..+++..+ +.+++++|+++++++.+++++...+..++++++++|+ ...... .++||
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~------~~~~D 72 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF------LEPFD 72 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT------SSCEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc------CCCCC
Confidence 467999999999999999999655 8899999999999999999997777778999999999 322222 46799
Q ss_pred EEEEeC-Cc------cccHHHHHHHHhcccCCeEEEEec
Q 029414 106 YAFVDA-DK------DNYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 106 ~i~id~-~~------~~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
+|++.. .. .....+++.+.+.|+|||+++++.
T Consensus 73 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 73 LVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999988 32 234567999999999999999964
No 9
>PRK04457 spermidine synthase; Provisional
Probab=99.78 E-value=3.1e-17 Score=127.45 Aligned_cols=124 Identities=17% Similarity=0.184 Sum_probs=101.7
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414 6 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 85 (194)
Q Consensus 6 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 85 (194)
|....-++...++..+....++++|||||||+|.++.+++...+ +.+++++|++++.++.+++++...+..++++++.+
T Consensus 46 P~~l~~~y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~ 124 (262)
T PRK04457 46 PSELELAYTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEA 124 (262)
T ss_pred cccccCHHHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEEC
Confidence 33334456666666666566789999999999999999999886 88999999999999999999876555568999999
Q ss_pred chHHHHHHHhhcCCCCCceeEEEEeCCcc-------ccHHHHHHHHhcccCCeEEEEe
Q 029414 86 EALSVLDQLLKYSENEGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 86 d~~~~~~~~~~~~~~~~~fD~i~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
|+.+++... .++||+|++|.... ....+++.+.+.|+|||+++++
T Consensus 125 Da~~~l~~~------~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 125 DGAEYIAVH------RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CHHHHHHhC------CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 999887653 46899999997421 2378999999999999999996
No 10
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.74 E-value=1.8e-16 Score=118.61 Aligned_cols=121 Identities=24% Similarity=0.332 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHH
Q 029414 12 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 91 (194)
Q Consensus 12 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 91 (194)
.+...+........++.+|||+|||+|..++.++...++.++++++|+++++++.+++++..+++.+++.++.+|..+.+
T Consensus 26 ~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l 105 (198)
T PRK00377 26 EEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEIL 105 (198)
T ss_pred HHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhH
Confidence 44444433334455778999999999999999988765568999999999999999999999886668999999998766
Q ss_pred HHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414 92 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 138 (194)
Q Consensus 92 ~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 138 (194)
+.. .+.||.||+++.......+++.+.+.|+|||.++++..
T Consensus 106 ~~~------~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 106 FTI------NEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred hhc------CCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEee
Confidence 553 36899999977666778899999999999999998543
No 11
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.74 E-value=4e-17 Score=120.22 Aligned_cols=102 Identities=23% Similarity=0.332 Sum_probs=87.9
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 103 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 103 (194)
..++.+|||+|||+|..+..++...+ .++|+++|.++++++.++++.+..+++ +++++++|+.+. .. .++
T Consensus 40 ~~~~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~-~~-------~~~ 109 (181)
T TIGR00138 40 YLDGKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDF-QH-------EEQ 109 (181)
T ss_pred hcCCCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhc-cc-------cCC
Confidence 34688999999999999999987665 789999999999999999999988876 699999998774 11 368
Q ss_pred eeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
||+|++++ ..+...+++.+.+.|+|||.+++.
T Consensus 110 fD~I~s~~-~~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 110 FDVITSRA-LASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred ccEEEehh-hhCHHHHHHHHHHhcCCCCEEEEE
Confidence 99999987 556778889999999999999985
No 12
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.74 E-value=6.6e-17 Score=111.62 Aligned_cols=117 Identities=23% Similarity=0.289 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHH
Q 029414 12 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 91 (194)
Q Consensus 12 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 91 (194)
++....+.......+..+|||+|||+|..+..+++..+ ..+++++|+++.+++.+++++...+.+ +++++.+|+....
T Consensus 5 ~~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~ 82 (124)
T TIGR02469 5 REVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEAL 82 (124)
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccC
Confidence 34444444444455567999999999999999999876 689999999999999999999988776 7899888876433
Q ss_pred HHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 92 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 92 ~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
+.. .++||.|+++.......++++.+.+.|+|||.+++.
T Consensus 83 ~~~------~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 83 EDS------LPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred hhh------cCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEE
Confidence 322 368999999876666778999999999999999986
No 13
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.73 E-value=3.4e-16 Score=116.03 Aligned_cols=119 Identities=27% Similarity=0.296 Sum_probs=97.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414 9 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 88 (194)
Q Consensus 9 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 88 (194)
.+.+...+.+...+...++.+|||+|||+|..+..++...+ +.+++++|+++++++.+++++...+++ +++++.+|..
T Consensus 14 ~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~ 91 (187)
T PRK08287 14 MTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAP 91 (187)
T ss_pred CchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCch
Confidence 34445555555555556788999999999999999998875 789999999999999999999988875 7999998874
Q ss_pred HHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414 89 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 138 (194)
Q Consensus 89 ~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 138 (194)
. .+ .++||+|+++........+++.+.+.|+|||+++++..
T Consensus 92 ~---~~------~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 92 I---EL------PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred h---hc------CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEe
Confidence 2 11 35799999987666677889999999999999999653
No 14
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.72 E-value=5.8e-16 Score=114.40 Aligned_cols=101 Identities=18% Similarity=0.259 Sum_probs=87.8
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 105 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD 105 (194)
++.+|||+|||+|..++.++...+ +++|+++|.++++++.++++.+..+++ +++++++|+.+... .++||
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~--------~~~fD 114 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQ--------EEKFD 114 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCC--------CCCcc
Confidence 478999999999999999998765 789999999999999999999999986 59999999876421 36899
Q ss_pred EEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414 106 YAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 106 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
+|+++. ..+...+++.+.+.|+|||.+++..
T Consensus 115 lV~~~~-~~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 115 VVTSRA-VASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred EEEEcc-ccCHHHHHHHHHHhcCCCeEEEEEe
Confidence 999976 3566788999999999999999863
No 15
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.72 E-value=4.9e-17 Score=124.12 Aligned_cols=113 Identities=19% Similarity=0.260 Sum_probs=84.1
Q ss_pred HHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCC
Q 029414 20 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE 99 (194)
Q Consensus 20 ~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 99 (194)
.+....++.+|||+|||+|..+..+++..++.++|+++|+++++++.+++++...+.. +++++++|+.+....
T Consensus 41 ~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~------ 113 (233)
T PF01209_consen 41 KLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFP------ 113 (233)
T ss_dssp HHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-------
T ss_pred hccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCC------
Confidence 3344567789999999999999999998876899999999999999999999988876 999999999775221
Q ss_pred CCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414 100 NEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW 140 (194)
Q Consensus 100 ~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 140 (194)
+++||.|.+... .++....++++.+.|||||.+++-+...
T Consensus 114 -d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~ 156 (233)
T PF01209_consen 114 -DNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSK 156 (233)
T ss_dssp -TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred -CCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccC
Confidence 589999998865 4677889999999999999999866543
No 16
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.72 E-value=6.8e-17 Score=121.99 Aligned_cols=118 Identities=26% Similarity=0.351 Sum_probs=98.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecch
Q 029414 8 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 87 (194)
Q Consensus 8 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 87 (194)
..+.|.....+...+...++.+|||+|||+|+.+..+++..+++++|+++|+++++++.++++++..+.. +++++.+|+
T Consensus 58 ~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~ 136 (212)
T PRK13942 58 TISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDG 136 (212)
T ss_pred EeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCc
Confidence 4567777777777777778899999999999999999988765789999999999999999999988875 899999998
Q ss_pred HHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 88 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 88 ~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
.+..+. .++||+|++++..+... +.+.+.|+|||.+++.
T Consensus 137 ~~~~~~-------~~~fD~I~~~~~~~~~~---~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 137 TLGYEE-------NAPYDRIYVTAAGPDIP---KPLIEQLKDGGIMVIP 175 (212)
T ss_pred ccCCCc-------CCCcCEEEECCCcccch---HHHHHhhCCCcEEEEE
Confidence 654322 36899999987654443 4567889999999984
No 17
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=5.2e-17 Score=119.92 Aligned_cols=116 Identities=23% Similarity=0.298 Sum_probs=100.4
Q ss_pred cCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414 7 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 86 (194)
Q Consensus 7 ~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d 86 (194)
...+.|...+.|-.++...++.+|||||||+|+.+..+|+.. ++|+++|..++..+.|+++++..++. |+.+.++|
T Consensus 53 qtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gD 128 (209)
T COG2518 53 QTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYE-NVTVRHGD 128 (209)
T ss_pred ceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECC
Confidence 556778888888888889999999999999999999999985 49999999999999999999999987 69999999
Q ss_pred hHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 87 ALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 87 ~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
...-++. ..+||.|++.+....... .+.+.|++||.+++-
T Consensus 129 G~~G~~~-------~aPyD~I~Vtaaa~~vP~---~Ll~QL~~gGrlv~P 168 (209)
T COG2518 129 GSKGWPE-------EAPYDRIIVTAAAPEVPE---ALLDQLKPGGRLVIP 168 (209)
T ss_pred cccCCCC-------CCCcCEEEEeeccCCCCH---HHHHhcccCCEEEEE
Confidence 9776555 479999999987555433 356899999999994
No 18
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.71 E-value=1.2e-16 Score=120.10 Aligned_cols=117 Identities=22% Similarity=0.321 Sum_probs=93.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH
Q 029414 11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 90 (194)
Q Consensus 11 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 90 (194)
.+...+.+...+...++.+|||+|||+|+.+..++..+++.++|+++|+++++++.+++++...++.++++++.+|+.+.
T Consensus 57 ~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~ 136 (205)
T PRK13944 57 APHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRG 136 (205)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccC
Confidence 34444444444445566899999999999999999887656899999999999999999999988876799999998764
Q ss_pred HHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414 91 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 91 ~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
++. ..+||+|+++..... +.+.+.+.|+|||.|++..
T Consensus 137 ~~~-------~~~fD~Ii~~~~~~~---~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 137 LEK-------HAPFDAIIVTAAAST---IPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred Ccc-------CCCccEEEEccCcch---hhHHHHHhcCcCcEEEEEE
Confidence 332 368999999876443 3356789999999999853
No 19
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.70 E-value=1.4e-16 Score=120.96 Aligned_cols=107 Identities=21% Similarity=0.323 Sum_probs=94.7
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 105 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD 105 (194)
++.+|||+|||||..++.+++..+ .++|+++|+++.+++.++++....+..+ ++++++|+++.. + .+++||
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LP--f-----~D~sFD 121 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLP--F-----PDNSFD 121 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCC--C-----CCCccC
Confidence 689999999999999999999998 8999999999999999999999888764 999999997753 2 268999
Q ss_pred EEEEeCC---ccccHHHHHHHHhcccCCeEEEEeccccc
Q 029414 106 YAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWG 141 (194)
Q Consensus 106 ~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~ 141 (194)
++.+.-. ..+...+++++.|.|||||.+++-+...+
T Consensus 122 ~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 122 AVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred EEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 9998854 67889999999999999999998776543
No 20
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.70 E-value=4.4e-16 Score=129.23 Aligned_cols=164 Identities=22% Similarity=0.249 Sum_probs=120.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414 10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 89 (194)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 89 (194)
......+++..++...++.+|||+|||+|..+..++..++..++|+++|+++.+++.+++++++.++. +++++.+|+.+
T Consensus 236 ~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~ 314 (434)
T PRK14901 236 VQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRN 314 (434)
T ss_pred EECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhh
Confidence 33445556666666667789999999999999999998765689999999999999999999999986 69999999876
Q ss_pred HHHHHhhcCCCCCceeEEEEeCCcc---------c----------------cHHHHHHHHhcccCCeEEEEecccccccc
Q 029414 90 VLDQLLKYSENEGSFDYAFVDADKD---------N----------------YCNYHERLMKLLKVGGIAVYDNTLWGGTV 144 (194)
Q Consensus 90 ~~~~~~~~~~~~~~fD~i~id~~~~---------~----------------~~~~~~~~~~~L~~gG~lv~~~~~~~g~~ 144 (194)
....... ..++||.|++|++.+ + ....++.+++.|||||.|+...+....
T Consensus 315 ~~~~~~~---~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~-- 389 (434)
T PRK14901 315 LLELKPQ---WRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP-- 389 (434)
T ss_pred ccccccc---ccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh--
Confidence 5321100 036799999996521 1 246788999999999999987655321
Q ss_pred cCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEEE-----eeec---CCeeEEEEEcC
Q 029414 145 AVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLS-----HVAL---GDGITICRRIF 194 (194)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~p~---~~G~~i~~~~~ 194 (194)
.++ .......+.++|+|+.. ++|- .+|+-+|+.+|
T Consensus 390 ---~En------------e~~v~~~l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l~k 432 (434)
T PRK14901 390 ---AEN------------EAQIEQFLARHPDWKLEPPKQKIWPHRQDGDGFFMAVLRK 432 (434)
T ss_pred ---hhH------------HHHHHHHHHhCCCcEecCCCCccCCCCCCCCcEEEEEEEe
Confidence 111 33444455668888755 3453 49999998765
No 21
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.70 E-value=1.8e-16 Score=119.97 Aligned_cols=116 Identities=28% Similarity=0.385 Sum_probs=94.6
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414 10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 89 (194)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 89 (194)
+.+...+.+...+...++.+|||+|||+|+.+..++...+++++|+++|+++++++.|++++...++. +++++.+|+.+
T Consensus 61 ~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-~v~~~~~d~~~ 139 (215)
T TIGR00080 61 SAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-NVIVIVGDGTQ 139 (215)
T ss_pred chHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CeEEEECCccc
Confidence 44555556666666778899999999999999999998765688999999999999999999999875 89999999876
Q ss_pred HHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 90 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 90 ~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
..+. .++||+|++++..... .+.+.+.|+|||++++.
T Consensus 140 ~~~~-------~~~fD~Ii~~~~~~~~---~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 140 GWEP-------LAPYDRIYVTAAGPKI---PEALIDQLKEGGILVMP 176 (215)
T ss_pred CCcc-------cCCCCEEEEcCCcccc---cHHHHHhcCcCcEEEEE
Confidence 4332 3689999998765443 35577899999999984
No 22
>PLN03075 nicotianamine synthase; Provisional
Probab=99.70 E-value=2e-16 Score=123.48 Aligned_cols=120 Identities=13% Similarity=0.167 Sum_probs=98.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEEccccc-HHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHH-cCCCCcEEEEecch
Q 029414 10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTG-YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK-AGVDHKINFIESEA 87 (194)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G-~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~~~~~~v~~~~~d~ 87 (194)
..+..+.+|..+... ++++|+|||||.| .+++.++....++++++++|.++++++.|++.+.. .++.++++|..+|+
T Consensus 108 L~~lE~~~L~~~~~~-~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da 186 (296)
T PLN03075 108 LSKLEFDLLSQHVNG-VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADV 186 (296)
T ss_pred HHHHHHHHHHHhhcC-CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECch
Confidence 445566777666655 8899999999955 56666665554589999999999999999999965 78888899999999
Q ss_pred HHHHHHHhhcCCCCCceeEEEEeCC----ccccHHHHHHHHhcccCCeEEEEec
Q 029414 88 LSVLDQLLKYSENEGSFDYAFVDAD----KDNYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 88 ~~~~~~~~~~~~~~~~fD~i~id~~----~~~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
.+.... .++||+||+++. +++...+++.+.+.|+|||++++..
T Consensus 187 ~~~~~~-------l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 187 MDVTES-------LKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred hhcccc-------cCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 875322 368999999952 5788999999999999999999975
No 23
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.70 E-value=7.4e-17 Score=120.97 Aligned_cols=119 Identities=24% Similarity=0.309 Sum_probs=94.6
Q ss_pred cCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414 7 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 86 (194)
Q Consensus 7 ~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d 86 (194)
...+.|...+.+-..+...++.+|||||||+|+.+..++....+.++|+++|.+++..+.|+++++..+.. |+.++.+|
T Consensus 53 ~~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gd 131 (209)
T PF01135_consen 53 QTISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGD 131 (209)
T ss_dssp EEE--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-
T ss_pred eechHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcc
Confidence 45567777777777787889999999999999999999998876789999999999999999999999876 89999999
Q ss_pred hHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 87 ALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 87 ~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
.....+. ..+||.|++.+..+... ..+.+.|++||++|+-
T Consensus 132 g~~g~~~-------~apfD~I~v~~a~~~ip---~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 132 GSEGWPE-------EAPFDRIIVTAAVPEIP---EALLEQLKPGGRLVAP 171 (209)
T ss_dssp GGGTTGG-------G-SEEEEEESSBBSS-----HHHHHTEEEEEEEEEE
T ss_pred hhhcccc-------CCCcCEEEEeeccchHH---HHHHHhcCCCcEEEEE
Confidence 8775544 37899999998755443 3466889999999994
No 24
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.69 E-value=9.5e-16 Score=114.49 Aligned_cols=122 Identities=24% Similarity=0.254 Sum_probs=99.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecch
Q 029414 8 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 87 (194)
Q Consensus 8 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 87 (194)
..+.++..+++...+...++.+|||+|||+|..+..++...+ +++++++|.++++++.++++++..+.+ +++++.+|+
T Consensus 22 p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~ 99 (196)
T PRK07402 22 PLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSA 99 (196)
T ss_pred CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECch
Confidence 456667777766666666778999999999999999987765 789999999999999999999988875 799999998
Q ss_pred HHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414 88 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 138 (194)
Q Consensus 88 ~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 138 (194)
.+.+..+ ...+|.++++.. .....+++.+.+.|+|||.+++...
T Consensus 100 ~~~~~~~------~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 100 PECLAQL------APAPDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred HHHHhhC------CCCCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 7754443 245788888764 3456889999999999999999753
No 25
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.69 E-value=2.8e-16 Score=112.69 Aligned_cols=108 Identities=27% Similarity=0.387 Sum_probs=90.8
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414 25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f 104 (194)
.+..+|||+|||+|..+..++....++.+++++|+++++++.|+++++..+.+ ++++.++|..+ ++... .++|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~~-----~~~~ 74 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED-LPQEL-----EEKF 74 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC-GCGCS-----STTE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc-ccccc-----CCCe
Confidence 35689999999999999999955444899999999999999999999999988 99999999988 44310 1689
Q ss_pred eEEEEeCC---ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414 105 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL 139 (194)
Q Consensus 105 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~ 139 (194)
|+|++... ..+....++.+.+.|+++|.+++.+..
T Consensus 75 D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 75 DIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999865 445667899999999999999997765
No 26
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.68 E-value=2.5e-15 Score=124.40 Aligned_cols=125 Identities=21% Similarity=0.296 Sum_probs=100.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414 9 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 88 (194)
Q Consensus 9 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 88 (194)
.......+++..++...++.+|||+|||+|..|..++..++.+++|+++|+++.+++.+++++++.++. ++++..+|+.
T Consensus 220 ~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~ 298 (431)
T PRK14903 220 TVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAE 298 (431)
T ss_pred EEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchh
Confidence 344455566666666777889999999999999999998865789999999999999999999999986 6999999987
Q ss_pred HHHHHHhhcCCCCCceeEEEEeCCcc-------------------------ccHHHHHHHHhcccCCeEEEEecccc
Q 029414 89 SVLDQLLKYSENEGSFDYAFVDADKD-------------------------NYCNYHERLMKLLKVGGIAVYDNTLW 140 (194)
Q Consensus 89 ~~~~~~~~~~~~~~~fD~i~id~~~~-------------------------~~~~~~~~~~~~L~~gG~lv~~~~~~ 140 (194)
+..... .++||.|++|++.. .....++.+++.|+|||.+++..+..
T Consensus 299 ~l~~~~------~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 299 RLTEYV------QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred hhhhhh------hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 653222 36799999997521 12456888999999999999987653
No 27
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.67 E-value=4.8e-15 Score=116.53 Aligned_cols=119 Identities=14% Similarity=0.266 Sum_probs=94.8
Q ss_pred CCCHHHHHHHHHHHH----HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe
Q 029414 9 GTAPDAGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE 84 (194)
Q Consensus 9 ~~~~~~~~~l~~l~~----~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~ 84 (194)
.+.++++.++...+. ..++.+|||+|||+|..++.++...+ +.+++++|+++.+++.|++++..+++.++++++.
T Consensus 100 ipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~ 178 (284)
T TIGR03533 100 IPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQ 178 (284)
T ss_pred cCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE
Confidence 355666666665543 12457999999999999999999876 7899999999999999999999998877899999
Q ss_pred cchHHHHHHHhhcCCCCCceeEEEEeCCc----------------------------cccHHHHHHHHhcccCCeEEEEe
Q 029414 85 SEALSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 85 ~d~~~~~~~~~~~~~~~~~fD~i~id~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
+|..+.++ .++||+|+++++. ..+..+++.+.+.|+|||.+++.
T Consensus 179 ~D~~~~~~--------~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 179 SDLFAALP--------GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred CchhhccC--------CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99865321 2579999998541 01245678888999999999985
No 28
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.67 E-value=1.4e-15 Score=118.06 Aligned_cols=103 Identities=18% Similarity=0.220 Sum_probs=88.1
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414 25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f 104 (194)
.++.+|||+|||+|..+..++.. +.+|+++|+++++++.|+++....++.++++++++|+.+..+.. .++|
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~------~~~f 113 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL------ETPV 113 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc------CCCC
Confidence 35679999999999999999985 56999999999999999999998888778999999998764332 4689
Q ss_pred eEEEEeCC---ccccHHHHHHHHhcccCCeEEEEe
Q 029414 105 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 105 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
|+|++... ..+...+++.+.+.|||||++++.
T Consensus 114 D~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 114 DLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred CEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence 99998764 346678899999999999999864
No 29
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.66 E-value=1.2e-14 Score=113.23 Aligned_cols=119 Identities=15% Similarity=0.212 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHH
Q 029414 13 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD 92 (194)
Q Consensus 13 ~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 92 (194)
....+...++...++.+|||+|||+|..+..++..++..++|+++|+++.+++.+++++++.++. ++++...|+.....
T Consensus 58 ~~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~ 136 (264)
T TIGR00446 58 ASSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGA 136 (264)
T ss_pred HHHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhh
Confidence 33444444555556789999999999999999998865689999999999999999999999986 79999999866422
Q ss_pred HHhhcCCCCCceeEEEEeCCcc-------------------------ccHHHHHHHHhcccCCeEEEEeccc
Q 029414 93 QLLKYSENEGSFDYAFVDADKD-------------------------NYCNYHERLMKLLKVGGIAVYDNTL 139 (194)
Q Consensus 93 ~~~~~~~~~~~fD~i~id~~~~-------------------------~~~~~~~~~~~~L~~gG~lv~~~~~ 139 (194)
. .+.||.|++|++.. ....+++.++++|||||+|+.....
T Consensus 137 ~-------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 137 A-------VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred h-------ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 2 35699999996521 1245788899999999999987654
No 30
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.66 E-value=7.5e-16 Score=112.51 Aligned_cols=110 Identities=23% Similarity=0.393 Sum_probs=89.1
Q ss_pred HHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHh
Q 029414 16 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL 95 (194)
Q Consensus 16 ~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 95 (194)
.+|...+...+.++|||+|||+|..++.++...+ ..+++++|+++.+++.++++++.+++++ ++++.+|..+..+
T Consensus 21 ~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~--- 95 (170)
T PF05175_consen 21 RLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALP--- 95 (170)
T ss_dssp HHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC---
T ss_pred HHHHHHHhhccCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccc---
Confidence 3555545455788999999999999999999876 7789999999999999999999999875 9999999866432
Q ss_pred hcCCCCCceeEEEEeCCc----c----ccHHHHHHHHhcccCCeEEEE
Q 029414 96 KYSENEGSFDYAFVDADK----D----NYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 96 ~~~~~~~~fD~i~id~~~----~----~~~~~~~~~~~~L~~gG~lv~ 135 (194)
.++||+|+++++. . ....+++.+.++|+|||.+++
T Consensus 96 -----~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 96 -----DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp -----TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred -----ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 3789999999762 1 246778899999999999965
No 31
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.65 E-value=6.1e-15 Score=122.84 Aligned_cols=125 Identities=21% Similarity=0.272 Sum_probs=100.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecch
Q 029414 8 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 87 (194)
Q Consensus 8 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 87 (194)
+........++...+...++.+|||+|||+|..+..++...++.++++++|+++.+++.++++++..++. +++++++|+
T Consensus 232 ~~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~ 310 (444)
T PRK14902 232 ITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDA 310 (444)
T ss_pred EEEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCc
Confidence 3445555666666666667789999999999999999998754789999999999999999999999986 599999998
Q ss_pred HHHHHHHhhcCCCCCceeEEEEeCCccc-------------------------cHHHHHHHHhcccCCeEEEEeccc
Q 029414 88 LSVLDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTL 139 (194)
Q Consensus 88 ~~~~~~~~~~~~~~~~fD~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~ 139 (194)
.+....+ .++||+|++|++... ...+++.+.+.|+|||.+++..+.
T Consensus 311 ~~~~~~~------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 311 RKVHEKF------AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred ccccchh------cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 7654333 257999999975210 135788899999999999986554
No 32
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.65 E-value=2.4e-15 Score=114.99 Aligned_cols=110 Identities=17% Similarity=0.363 Sum_probs=90.6
Q ss_pred HHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCC
Q 029414 21 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 100 (194)
Q Consensus 21 l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 100 (194)
.+...++.+|||+|||+|..+..+++..++.++++++|+++++++.+++++...+.+ +++++.+|+.+.. + .
T Consensus 40 ~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~--~-----~ 111 (231)
T TIGR02752 40 RMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLH-NVELVHGNAMELP--F-----D 111 (231)
T ss_pred hcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCC-ceEEEEechhcCC--C-----C
Confidence 334446789999999999999999998765789999999999999999999887764 8999999986531 1 1
Q ss_pred CCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecc
Q 029414 101 EGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT 138 (194)
Q Consensus 101 ~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~ 138 (194)
.++||+|++... .+++..+++.+.+.|+|||.+++.+.
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 112 DNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 468999998743 45677889999999999999998654
No 33
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.65 E-value=3e-15 Score=115.72 Aligned_cols=124 Identities=17% Similarity=0.217 Sum_probs=104.8
Q ss_pred cCCCCHHHHHHHHHHHH---HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEE
Q 029414 7 MMGTAPDAGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI 83 (194)
Q Consensus 7 ~~~~~~~~~~~l~~l~~---~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~ 83 (194)
-++++..+.+.+..++. +.++++|||||||.|..++++|+.+ +.+|+++++|++..+.+++++...|++.++++.
T Consensus 50 ~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~ 127 (283)
T COG2230 50 DMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVR 127 (283)
T ss_pred CCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEE
Confidence 34566666666666665 5578999999999999999999986 689999999999999999999999999899999
Q ss_pred ecchHHHHHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEecccccc
Q 029414 84 ESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLWGG 142 (194)
Q Consensus 84 ~~d~~~~~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 142 (194)
..|..++ .++||-|+.-+. .+++..+|+.+.+.|+|||.++++.+....
T Consensus 128 l~d~rd~----------~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 128 LQDYRDF----------EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred ecccccc----------ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 8887654 356999986654 567999999999999999999998876433
No 34
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.65 E-value=1.1e-14 Score=108.47 Aligned_cols=106 Identities=21% Similarity=0.331 Sum_probs=88.6
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414 25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f 104 (194)
.+..++||||||+|.++..+|...+ +..++++|+++.+++.+++++...++. |++++++|+.+....... .+.+
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~----~~~~ 88 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFP----DGSL 88 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCC----CCce
Confidence 3567899999999999999999886 889999999999999999999988886 899999999886554321 3589
Q ss_pred eEEEEeCCcc-----------ccHHHHHHHHhcccCCeEEEEe
Q 029414 105 DYAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 105 D~i~id~~~~-----------~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
|.|+++.+.+ ....+++.+.+.|+|||.+++.
T Consensus 89 d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 89 SKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred eEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 9999875311 1257899999999999999884
No 35
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.64 E-value=6.2e-15 Score=122.74 Aligned_cols=123 Identities=24% Similarity=0.235 Sum_probs=97.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414 9 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 88 (194)
Q Consensus 9 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 88 (194)
.+......+...++...++.+|||+|||+|..+..++..++..++|+++|+++.+++.+++++++.++. +++++.+|+.
T Consensus 233 ~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~ 311 (445)
T PRK14904 233 SVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDAR 311 (445)
T ss_pred EEeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCccc
Confidence 333344455555555566789999999999999999987765689999999999999999999999986 7999999986
Q ss_pred HHHHHHhhcCCCCCceeEEEEeCCcc-------------------------ccHHHHHHHHhcccCCeEEEEecccc
Q 029414 89 SVLDQLLKYSENEGSFDYAFVDADKD-------------------------NYCNYHERLMKLLKVGGIAVYDNTLW 140 (194)
Q Consensus 89 ~~~~~~~~~~~~~~~fD~i~id~~~~-------------------------~~~~~~~~~~~~L~~gG~lv~~~~~~ 140 (194)
+..+ .++||.|++|++.. ....+++.+.+.|+|||.+++..+..
T Consensus 312 ~~~~--------~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 312 SFSP--------EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred cccc--------CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 6431 36799999986410 12357889999999999999987653
No 36
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.64 E-value=1.8e-14 Score=114.40 Aligned_cols=119 Identities=15% Similarity=0.268 Sum_probs=93.4
Q ss_pred CCCHHHHHHHHHHHHH--c-C-CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe
Q 029414 9 GTAPDAGQLMAMLLRL--V-N-AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE 84 (194)
Q Consensus 9 ~~~~~~~~~l~~l~~~--~-~-~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~ 84 (194)
...+++..++...+.. . . +.+|||+|||+|..++.++...+ +.+++++|+++.+++.|++++..+++.+++++++
T Consensus 112 ipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~ 190 (307)
T PRK11805 112 VPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIE 190 (307)
T ss_pred CCCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 3455566665554431 1 2 36899999999999999999876 7899999999999999999999998877899999
Q ss_pred cchHHHHHHHhhcCCCCCceeEEEEeCCc----------------------------cccHHHHHHHHhcccCCeEEEEe
Q 029414 85 SEALSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 85 ~d~~~~~~~~~~~~~~~~~fD~i~id~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
+|..+.++ .++||+|+++++. ..+..+++.+.+.|+|||.+++.
T Consensus 191 ~D~~~~l~--------~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 191 SDLFAALP--------GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CchhhhCC--------CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99865432 2579999998541 11246678888999999999985
No 37
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.64 E-value=3.2e-15 Score=116.30 Aligned_cols=112 Identities=13% Similarity=0.172 Sum_probs=88.5
Q ss_pred HHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHH--cCCCCcEEEEecchHHHHHHHhhcCC
Q 029414 22 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK--AGVDHKINFIESEALSVLDQLLKYSE 99 (194)
Q Consensus 22 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~--~~~~~~v~~~~~d~~~~~~~~~~~~~ 99 (194)
....++.+|||+|||+|..+..+++..++.++|+++|+++++++.|+++... .....+++++++|+.+. + +
T Consensus 69 ~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p-~----- 141 (261)
T PLN02233 69 SGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-P-F----- 141 (261)
T ss_pred hCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-C-C-----
Confidence 3445678999999999999999998765568999999999999999887642 22234799999998654 1 1
Q ss_pred CCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414 100 NEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW 140 (194)
Q Consensus 100 ~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 140 (194)
.+++||+|++... ..+...+++++.+.|||||.+++.+...
T Consensus 142 ~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 142 DDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred CCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence 1468999998653 4567889999999999999999876543
No 38
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.63 E-value=3.4e-15 Score=111.95 Aligned_cols=119 Identities=21% Similarity=0.299 Sum_probs=92.6
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414 10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 89 (194)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 89 (194)
+++....+...+.. +..+|||+|||+|..+..++...+ ..+++++|+++++++.+++++...+++ +++++++|+.+
T Consensus 26 ~~~~~~~~~~~~~~--~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~~-~v~~~~~d~~~ 101 (202)
T PRK00121 26 LSPAPLDWAELFGN--DAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGLT-NLRLLCGDAVE 101 (202)
T ss_pred hcCCCCCHHHHcCC--CCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCCC-CEEEEecCHHH
Confidence 33444455555554 567999999999999999998876 789999999999999999999888774 89999999844
Q ss_pred HHHHHhhcCCCCCceeEEEEeCCcc-----------ccHHHHHHHHhcccCCeEEEEe
Q 029414 90 VLDQLLKYSENEGSFDYAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 90 ~~~~~~~~~~~~~~fD~i~id~~~~-----------~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
.++... ..+.||+|++....+ ....+++.+.+.|+|||.+++.
T Consensus 102 ~l~~~~----~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 155 (202)
T PRK00121 102 VLLDMF----PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA 155 (202)
T ss_pred HHHHHc----CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence 444321 136799999864211 2467899999999999999985
No 39
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.63 E-value=9e-15 Score=121.21 Aligned_cols=126 Identities=18% Similarity=0.223 Sum_probs=96.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414 9 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 88 (194)
Q Consensus 9 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 88 (194)
.......+++...+...++.+|||+|||+|..+..++..++ .++++++|+++++++.+++++++.++..++.+..+|..
T Consensus 221 ~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~ 299 (426)
T TIGR00563 221 TVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGR 299 (426)
T ss_pred EEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccc
Confidence 33445566666667666788999999999999999999886 78999999999999999999999987634444666654
Q ss_pred HHHHHHhhcCCCCCceeEEEEeCCcc---------c----------------cHHHHHHHHhcccCCeEEEEecccc
Q 029414 89 SVLDQLLKYSENEGSFDYAFVDADKD---------N----------------YCNYHERLMKLLKVGGIAVYDNTLW 140 (194)
Q Consensus 89 ~~~~~~~~~~~~~~~fD~i~id~~~~---------~----------------~~~~~~~~~~~L~~gG~lv~~~~~~ 140 (194)
.... +. ..++||.|++|++.. + ...+++.++++|||||.+++..+..
T Consensus 300 ~~~~-~~----~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 300 GPSQ-WA----ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred cccc-cc----cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 3211 10 136799999996411 1 2567889999999999999987654
No 40
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=3.4e-15 Score=112.71 Aligned_cols=114 Identities=17% Similarity=0.269 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHH
Q 029414 14 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ 93 (194)
Q Consensus 14 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 93 (194)
-..++.+.+...++.+|+|.|+|+|..+.+||..+.+.++|+++|+.++.++.|++|++.+++.+++++..+|..+....
T Consensus 82 D~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 82 DAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred CHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence 34455566667789999999999999999999988878999999999999999999999999987799999998775432
Q ss_pred HhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414 94 LLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 94 ~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
..||.||+|- +++..+++.+...|+|||.+++..
T Consensus 162 --------~~vDav~LDm--p~PW~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 162 --------EDVDAVFLDL--PDPWNVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred --------cccCEEEEcC--CChHHHHHHHHHHhCCCcEEEEEc
Confidence 4899999985 567789999999999999999964
No 41
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.62 E-value=5.3e-15 Score=111.77 Aligned_cols=115 Identities=21% Similarity=0.255 Sum_probs=94.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecch
Q 029414 8 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 87 (194)
Q Consensus 8 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 87 (194)
..+++...+.+..++...++.+|||+|||+|+.+..++... ++++++|+++++++.+++++...++. ++++..+|.
T Consensus 60 ~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~ 135 (212)
T PRK00312 60 TISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDG 135 (212)
T ss_pred eeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCc
Confidence 35677777787777777788999999999999999888764 48999999999999999999998876 699999997
Q ss_pred HHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 88 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 88 ~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
.+..+. .++||+|+++...... .+.+.+.|+|||.+++.
T Consensus 136 ~~~~~~-------~~~fD~I~~~~~~~~~---~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 136 WKGWPA-------YAPFDRILVTAAAPEI---PRALLEQLKEGGILVAP 174 (212)
T ss_pred ccCCCc-------CCCcCEEEEccCchhh---hHHHHHhcCCCcEEEEE
Confidence 553222 3689999998754433 45678999999999985
No 42
>PRK00811 spermidine synthase; Provisional
Probab=99.62 E-value=3.5e-14 Score=111.62 Aligned_cols=105 Identities=21% Similarity=0.279 Sum_probs=86.7
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC--C--CCcEEEEecchHHHHHHHhhcCCC
Q 029414 25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V--DHKINFIESEALSVLDQLLKYSEN 100 (194)
Q Consensus 25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~--~~~v~~~~~d~~~~~~~~~~~~~~ 100 (194)
.++++||++|||.|..+.++++..+ ..+|+++|++++.++.+++++...+ . +++++++.+|+.+.+...
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~-~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~------ 147 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPS-VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET------ 147 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCC-CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC------
Confidence 4688999999999999999987633 5799999999999999999987532 1 468999999999877652
Q ss_pred CCceeEEEEeCCcc-------ccHHHHHHHHhcccCCeEEEEe
Q 029414 101 EGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 101 ~~~fD~i~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
.++||+|++|...+ ...++++.+.+.|+|||++++.
T Consensus 148 ~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 148 ENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred CCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 47899999996421 1367789999999999999985
No 43
>PLN02366 spermidine synthase
Probab=99.62 E-value=4.3e-14 Score=111.89 Aligned_cols=108 Identities=19% Similarity=0.298 Sum_probs=88.4
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC--C-CCcEEEEecchHHHHHHHhhcCCC
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSEN 100 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~~~~~~~~~~ 100 (194)
..++++||+||+|.|..+.++++. +...+++.+|++++.++.+++.+...+ + +++++++.+|+.+.+....
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~----- 162 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP----- 162 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc-----
Confidence 357899999999999999999876 435799999999999999999987532 2 3689999999988876531
Q ss_pred CCceeEEEEeCCcc-------ccHHHHHHHHhcccCCeEEEEec
Q 029414 101 EGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 101 ~~~fD~i~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
.++||+|++|...+ ....+++.+.+.|+|||+++.+.
T Consensus 163 ~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 163 EGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred CCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 35799999997532 24578999999999999998853
No 44
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.62 E-value=2.3e-14 Score=118.79 Aligned_cols=123 Identities=22% Similarity=0.269 Sum_probs=96.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414 9 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 88 (194)
Q Consensus 9 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 88 (194)
.+......+...++...++.+|||+|||+|..+..++...+ +++|+++|.++.+++.++++++..++. ++++.+|+.
T Consensus 227 ~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~ 303 (427)
T PRK10901 227 SVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDAR 303 (427)
T ss_pred EEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcc
Confidence 34445555666666666788999999999999999999875 589999999999999999999998864 688899986
Q ss_pred HHHHHHhhcCCCCCceeEEEEeCCccc-------------------------cHHHHHHHHhcccCCeEEEEeccc
Q 029414 89 SVLDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTL 139 (194)
Q Consensus 89 ~~~~~~~~~~~~~~~fD~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~ 139 (194)
+..... ..++||.|++|++... ...+++.+.+.|+|||.+++..+.
T Consensus 304 ~~~~~~-----~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 304 DPAQWW-----DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred cchhhc-----ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 542211 1357999999975211 135788899999999999987654
No 45
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.62 E-value=8.9e-15 Score=100.12 Aligned_cols=102 Identities=24% Similarity=0.446 Sum_probs=85.4
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 029414 27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 106 (194)
Q Consensus 27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~ 106 (194)
+.+|||+|||+|..++.+++.. ..+++++|+++..++.++.++...++.++++++++|..+..+.+ ..++||+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~-----~~~~~D~ 73 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL-----PDGKFDL 73 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC-----TTT-EEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc-----cCceeEE
Confidence 3589999999999999999885 47999999999999999999999998778999999998876433 2578999
Q ss_pred EEEeCCcc-----------ccHHHHHHHHhcccCCeEEEE
Q 029414 107 AFVDADKD-----------NYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 107 i~id~~~~-----------~~~~~~~~~~~~L~~gG~lv~ 135 (194)
|+.+.+.. .+..+++.+.++|+|||.+++
T Consensus 74 Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 74 IVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp EEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 99997621 246789999999999999987
No 46
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.61 E-value=4e-15 Score=111.52 Aligned_cols=104 Identities=18% Similarity=0.231 Sum_probs=88.5
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414 25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f 104 (194)
..+.+|||+|||.|..+..+|+. +..|+++|.+++.++.|+.+..+.++. +.+.+..+++.... .++|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~-------~~~F 125 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASA-------GGQF 125 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhc-------CCCc
Confidence 36789999999999999999996 679999999999999999999888863 67777777665443 4799
Q ss_pred eEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414 105 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW 140 (194)
Q Consensus 105 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 140 (194)
|+|.|--. .++...++..|.+++||||.++++.+.+
T Consensus 126 DvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 126 DVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred cEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEecccc
Confidence 99998754 5678889999999999999999987643
No 47
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.61 E-value=6.1e-15 Score=112.84 Aligned_cols=115 Identities=17% Similarity=0.213 Sum_probs=90.5
Q ss_pred HHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH-HHHH
Q 029414 15 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-VLDQ 93 (194)
Q Consensus 15 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~ 93 (194)
..++-..+...++.+|||.|+|+|..|.+|++.+.+.|+|+++|..++.++.|+++++.+++++++++.++|..+ .+..
T Consensus 29 ~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 29 ISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred HHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence 345555566778999999999999999999999988999999999999999999999999999899999999864 2211
Q ss_pred HhhcCCCCCceeEEEEeCCccccHHHHHHHHhcc-cCCeEEEEe
Q 029414 94 LLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL-KVGGIAVYD 136 (194)
Q Consensus 94 ~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L-~~gG~lv~~ 136 (194)
- ....+|.||+|-+ ++..++..+.+.| ++||.|++-
T Consensus 109 ~-----~~~~~DavfLDlp--~Pw~~i~~~~~~L~~~gG~i~~f 145 (247)
T PF08704_consen 109 E-----LESDFDAVFLDLP--DPWEAIPHAKRALKKPGGRICCF 145 (247)
T ss_dssp T------TTSEEEEEEESS--SGGGGHHHHHHHE-EEEEEEEEE
T ss_pred c-----ccCcccEEEEeCC--CHHHHHHHHHHHHhcCCceEEEE
Confidence 0 1368999999964 4446788899999 899999984
No 48
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.61 E-value=4.2e-15 Score=115.93 Aligned_cols=118 Identities=20% Similarity=0.305 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHH---HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414 12 PDAGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 88 (194)
Q Consensus 12 ~~~~~~l~~l~~---~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 88 (194)
......+..++. ..++.+|||||||.|..+.++|+.. +.+|+++.+|++..+.+++.+.+.++++++++...|..
T Consensus 45 ~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~ 122 (273)
T PF02353_consen 45 EAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYR 122 (273)
T ss_dssp HHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GG
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecc
Confidence 334444555444 5578899999999999999999985 67999999999999999999999999999999999986
Q ss_pred HHHHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEeccccc
Q 029414 89 SVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLWG 141 (194)
Q Consensus 89 ~~~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~ 141 (194)
+. .++||.|+.-.. ..++..+++.+.+.|+|||.++++.+...
T Consensus 123 ~~----------~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~ 170 (273)
T PF02353_consen 123 DL----------PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHR 170 (273)
T ss_dssp G-------------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE-
T ss_pred cc----------CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 54 358999986643 35778999999999999999999876543
No 49
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.61 E-value=9.4e-15 Score=111.07 Aligned_cols=115 Identities=21% Similarity=0.303 Sum_probs=98.9
Q ss_pred HHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHH
Q 029414 15 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL 94 (194)
Q Consensus 15 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 94 (194)
+-+|..++.....++|||+|||+|..++.+|...+ ..+++++|+++++.+.|+++++.++++++++++++|..++.+..
T Consensus 33 aiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~ 111 (248)
T COG4123 33 AILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL 111 (248)
T ss_pred HHHHHhhcccccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc
Confidence 45677777777789999999999999999999876 59999999999999999999999999999999999998876664
Q ss_pred hhcCCCCCceeEEEEeCCc---------------------cccHHHHHHHHhcccCCeEEEE
Q 029414 95 LKYSENEGSFDYAFVDADK---------------------DNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 95 ~~~~~~~~~fD~i~id~~~---------------------~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
. ..+||+|+++++. ....++++.+.++|||||.+.+
T Consensus 112 ~-----~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~ 168 (248)
T COG4123 112 V-----FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF 168 (248)
T ss_pred c-----ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence 2 3579999999751 1235678888899999999998
No 50
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=99.60 E-value=1.2e-15 Score=102.92 Aligned_cols=102 Identities=31% Similarity=0.562 Sum_probs=52.3
Q ss_pred EEEcccccHHHHHHHhhCCCCC--EEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 029414 31 IEIGVFTGYSLLLTALTIPEDG--QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF 108 (194)
Q Consensus 31 LeiG~G~G~~~~~la~~~~~~~--~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~ 108 (194)
||+|++.|.++.++++.+++.. +++++|..+. .+..++.+++.++.++++++.+++.+.++.+. .++||+++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~-----~~~~dli~ 74 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP-----DGPIDLIF 74 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH-----H--EEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC-----CCCEEEEE
Confidence 7999999999999999887554 7999999986 44555556556777789999999999888773 26899999
Q ss_pred EeCC--ccccHHHHHHHHhcccCCeEEEEecc
Q 029414 109 VDAD--KDNYCNYHERLMKLLKVGGIAVYDNT 138 (194)
Q Consensus 109 id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~ 138 (194)
+|+. .+.....++.+++.|+|||+|+++|+
T Consensus 75 iDg~H~~~~~~~dl~~~~~~l~~ggviv~dD~ 106 (106)
T PF13578_consen 75 IDGDHSYEAVLRDLENALPRLAPGGVIVFDDY 106 (106)
T ss_dssp EES---HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred ECCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 9997 36677889999999999999999984
No 51
>PRK01581 speE spermidine synthase; Validated
Probab=99.60 E-value=9.2e-14 Score=110.99 Aligned_cols=106 Identities=15% Similarity=0.217 Sum_probs=85.4
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHH--H---HcCC-CCcEEEEecchHHHHHHHhhc
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII--K---KAGV-DHKINFIESEALSVLDQLLKY 97 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~--~---~~~~-~~~v~~~~~d~~~~~~~~~~~ 97 (194)
..++++||++|+|.|..+..+++.. +..+|+++|+++++++.|++.. . +..+ +++++++.+|+.+++...
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~--- 223 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP--- 223 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc---
Confidence 4578999999999999888888753 3689999999999999999732 1 1222 469999999999987663
Q ss_pred CCCCCceeEEEEeCCcc--------ccHHHHHHHHhcccCCeEEEEe
Q 029414 98 SENEGSFDYAFVDADKD--------NYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 98 ~~~~~~fD~i~id~~~~--------~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
.++||+|++|...+ ...++++.+.+.|+|||++++.
T Consensus 224 ---~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 224 ---SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred ---CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 46899999996422 1256899999999999999886
No 52
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.60 E-value=9.7e-14 Score=113.51 Aligned_cols=109 Identities=20% Similarity=0.321 Sum_probs=88.6
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC-CcEEEEecchHHHHHHHhhcCCCCC
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEG 102 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~ 102 (194)
..++++|||+|||+|.+++..+.. ...+|+++|+++.+++.++++++.++++ .+++++.+|+.+.+..+... .+
T Consensus 218 ~~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~---~~ 292 (396)
T PRK15128 218 YVENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDR---GE 292 (396)
T ss_pred hcCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhc---CC
Confidence 346789999999999998876653 2459999999999999999999999986 58999999999987665321 35
Q ss_pred ceeEEEEeCCc------------cccHHHHHHHHhcccCCeEEEEec
Q 029414 103 SFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 103 ~fD~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
+||+|++|++. ..+..+++.+.++|+|||++++..
T Consensus 293 ~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 293 KFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred CCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 89999999772 134556667889999999999854
No 53
>PLN02244 tocopherol O-methyltransferase
Probab=99.59 E-value=1.1e-14 Score=117.42 Aligned_cols=105 Identities=16% Similarity=0.255 Sum_probs=88.3
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414 25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f 104 (194)
.++.+|||+|||+|..+..++... +.+|+++|+++.+++.++++....++.++++++.+|+.+.. + ..++|
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~--~-----~~~~F 187 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP--F-----EDGQF 187 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC--C-----CCCCc
Confidence 356799999999999999999865 57999999999999999999988888778999999986631 1 14789
Q ss_pred eEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecc
Q 029414 105 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT 138 (194)
Q Consensus 105 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~ 138 (194)
|+|++... ..+...+++++.+.|||||.+++.+.
T Consensus 188 D~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 188 DLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred cEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99998643 34667899999999999999998653
No 54
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.59 E-value=3e-14 Score=108.42 Aligned_cols=103 Identities=19% Similarity=0.283 Sum_probs=87.4
Q ss_pred CeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 029414 28 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 107 (194)
Q Consensus 28 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i 107 (194)
++|||+|||+|..+..+++.++ +.+++++|++++.++.+++++...++.++++++.+|..+. + + .++||+|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~-~------~~~fD~I 71 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-P-F------PDTYDLV 71 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-C-C------CCCCCEe
Confidence 4799999999999999999875 6899999999999999999999988888899999887543 1 1 3579999
Q ss_pred EEeCC---ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414 108 FVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL 139 (194)
Q Consensus 108 ~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~ 139 (194)
++... ..+...+++.+.+.|+|||.+++.+..
T Consensus 72 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 72 FGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred ehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 86532 346778999999999999999998764
No 55
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.59 E-value=4.5e-15 Score=108.41 Aligned_cols=140 Identities=17% Similarity=0.237 Sum_probs=91.7
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 029414 27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 106 (194)
Q Consensus 27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~ 106 (194)
-.++||+|||.|.+|..||..+. +++++|+++.+++.|++++... ++|++.+.+..+..+ .++||+
T Consensus 44 y~~alEvGCs~G~lT~~LA~rCd---~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~~P--------~~~FDL 109 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRCD---RLLAVDISPRALARARERLAGL---PHVEWIQADVPEFWP--------EGRFDL 109 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGEE---EEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT-----------SS-EEE
T ss_pred cceeEecCCCccHHHHHHHHhhC---ceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCCCC--------CCCeeE
Confidence 36899999999999999999854 9999999999999999998643 389999999877644 379999
Q ss_pred EEEeCC------ccccHHHHHHHHhcccCCeEEEEecc-----cccccccCCCCCCCCCcccchHHHHHHHHHHhhcCCC
Q 029414 107 AFVDAD------KDNYCNYHERLMKLLKVGGIAVYDNT-----LWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPR 175 (194)
Q Consensus 107 i~id~~------~~~~~~~~~~~~~~L~~gG~lv~~~~-----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 175 (194)
|++... ..+...+++.+...|+|||.+|+-.. ...|+... .....+-|.+.+.+-..
T Consensus 110 IV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~g------------a~tv~~~~~~~~~~~~~ 177 (201)
T PF05401_consen 110 IVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAG------------AETVLEMLQEHLTEVER 177 (201)
T ss_dssp EEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--------------HHHHHHHHHHHSEEEEE
T ss_pred EEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccc------------hHHHHHHHHHHhhheeE
Confidence 999854 12345677888899999999999432 22333222 22234555666654444
Q ss_pred eEEEeeecCCeeEEEEE
Q 029414 176 VQLSHVALGDGITICRR 192 (194)
Q Consensus 176 ~~~~~~p~~~G~~i~~~ 192 (194)
++..--..+..-.+++-
T Consensus 178 ~~~~~~~~~~~~~~~~~ 194 (201)
T PF05401_consen 178 VECRGGSPNEDCLLARF 194 (201)
T ss_dssp EEEE-SSTTSEEEEEEE
T ss_pred EEEcCCCCCCceEeeee
Confidence 44444344444455543
No 56
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.58 E-value=1.6e-14 Score=113.05 Aligned_cols=112 Identities=18% Similarity=0.307 Sum_probs=91.1
Q ss_pred HHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414 23 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 102 (194)
Q Consensus 23 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 102 (194)
...++.+|||+|||+|..+..++....+.++|+++|+++.+++.++++....+.+ ++++..+|..+. + + ..+
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l-~-~-----~~~ 145 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEAL-P-V-----ADN 145 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhC-C-C-----CCC
Confidence 3456789999999999998888887655679999999999999999999888875 899999987553 1 1 136
Q ss_pred ceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccccc
Q 029414 103 SFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWGG 142 (194)
Q Consensus 103 ~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 142 (194)
+||+|+.... ..+....++.+.+.|||||.+++.+....+
T Consensus 146 ~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~ 188 (272)
T PRK11873 146 SVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRG 188 (272)
T ss_pred ceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccC
Confidence 8999998754 345678899999999999999998765433
No 57
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.58 E-value=1.8e-14 Score=114.73 Aligned_cols=104 Identities=19% Similarity=0.168 Sum_probs=85.8
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 105 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD 105 (194)
++.+|||||||+|..+..+++. +.+|+++|.++++++.|+++....+...+++++++++.+.... .++||
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~-------~~~FD 200 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADE-------GRKFD 200 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhc-------cCCCC
Confidence 4568999999999999999873 6799999999999999998876655545899999998665221 47899
Q ss_pred EEEEeCC---ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414 106 YAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL 139 (194)
Q Consensus 106 ~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~ 139 (194)
+|++... ..+...+++.+.+.|||||.+++....
T Consensus 201 ~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 201 AVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred EEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9998654 456788999999999999999997643
No 58
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.58 E-value=1.5e-14 Score=108.08 Aligned_cols=100 Identities=18% Similarity=0.230 Sum_probs=81.6
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 103 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 103 (194)
..++.+|||+|||+|..+.++|+. +.+|+++|+++++++.++++....++. ++++...|..+. .+ .++
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~--~~------~~~ 95 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNL--TF------DGE 95 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhC--Cc------CCC
Confidence 446789999999999999999985 569999999999999999999888875 688888887543 11 357
Q ss_pred eeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEE
Q 029414 104 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 104 fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
||+|++... ......+++.+.++|+|||.+++
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 999997654 23456889999999999999554
No 59
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.57 E-value=1.8e-13 Score=101.94 Aligned_cols=122 Identities=14% Similarity=0.099 Sum_probs=91.1
Q ss_pred cCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414 7 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 86 (194)
Q Consensus 7 ~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d 86 (194)
+++++...+.++..+....+..+|||+|||+|..++.++... ..+|+++|.+++.++.++++++.++.. +++++.+|
T Consensus 34 Rp~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D 110 (199)
T PRK10909 34 RPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTN 110 (199)
T ss_pred CcCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEch
Confidence 444455555566666555567899999999999998754432 369999999999999999999999875 79999999
Q ss_pred hHHHHHHHhhcCCCCCceeEEEEeCC-ccc-cHHHHHHHHh--cccCCeEEEEec
Q 029414 87 ALSVLDQLLKYSENEGSFDYAFVDAD-KDN-YCNYHERLMK--LLKVGGIAVYDN 137 (194)
Q Consensus 87 ~~~~~~~~~~~~~~~~~fD~i~id~~-~~~-~~~~~~~~~~--~L~~gG~lv~~~ 137 (194)
+.+.++.. .++||+|++|++ ... ....++.+.+ .|+|+++++++-
T Consensus 111 ~~~~l~~~------~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 111 ALSFLAQP------GTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred HHHHHhhc------CCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 98766432 357999999988 333 3344454443 378999999863
No 60
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.57 E-value=1.1e-13 Score=112.05 Aligned_cols=111 Identities=21% Similarity=0.342 Sum_probs=95.6
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC-CcEEEEecchHHHHHHHhhcCCCCC
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEG 102 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~ 102 (194)
..++++||++.|+||.+++..|... ..+|+++|.|...++.|++|++-++++ .++.++++|+.+++.....+ ..
T Consensus 215 ~~~GkrvLNlFsYTGgfSv~Aa~gG--A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~---g~ 289 (393)
T COG1092 215 LAAGKRVLNLFSYTGGFSVHAALGG--ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERR---GE 289 (393)
T ss_pred hccCCeEEEecccCcHHHHHHHhcC--CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhc---CC
Confidence 3458999999999999999999862 249999999999999999999999986 66899999999999887543 45
Q ss_pred ceeEEEEeCC------------ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414 103 SFDYAFVDAD------------KDNYCNYHERLMKLLKVGGIAVYDNTL 139 (194)
Q Consensus 103 ~fD~i~id~~------------~~~~~~~~~~~~~~L~~gG~lv~~~~~ 139 (194)
+||+|++|++ ..++...+..+.++|+|||++++....
T Consensus 290 ~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 290 KFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred cccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 8999999986 245677888899999999999997655
No 61
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.57 E-value=5.7e-14 Score=110.60 Aligned_cols=119 Identities=19% Similarity=0.314 Sum_probs=92.0
Q ss_pred CCHHHHHHHHHHHHH---cCC-CeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414 10 TAPDAGQLMAMLLRL---VNA-KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 85 (194)
Q Consensus 10 ~~~~~~~~l~~l~~~---~~~-~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 85 (194)
..++++.++...... .++ .+|||+|||+|..++.++...+ +.+++++|+++++++.+++++...++.++++++.+
T Consensus 94 Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~ 172 (284)
T TIGR00536 94 PRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQS 172 (284)
T ss_pred CCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence 344555555554422 223 6899999999999999999876 78999999999999999999999888767999999
Q ss_pred chHHHHHHHhhcCCCCCceeEEEEeCCc----------------------------cccHHHHHHHHhcccCCeEEEEec
Q 029414 86 EALSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 86 d~~~~~~~~~~~~~~~~~fD~i~id~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
|..+.++ ..+||+|+++++. ..+..+++.+.+.|+|||++++.-
T Consensus 173 d~~~~~~--------~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 173 NLFEPLA--------GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred chhccCc--------CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 9865321 2379999987531 024456788889999999999863
No 62
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.56 E-value=6.4e-14 Score=111.47 Aligned_cols=117 Identities=21% Similarity=0.371 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414 9 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 88 (194)
Q Consensus 9 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 88 (194)
++.+.....+...+...++.+|||+|||+|+.+..+++..+..++|+++|.++++++.|++++...+.+ ++.++.+|+.
T Consensus 63 ~~~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~ 141 (322)
T PRK13943 63 SSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGY 141 (322)
T ss_pred CCcHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChh
Confidence 345555555544555567789999999999999999998764578999999999999999999998875 7999999986
Q ss_pred HHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 89 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 89 ~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
+..+. .++||+|+++...... .+.+.+.|+|||.+++.
T Consensus 142 ~~~~~-------~~~fD~Ii~~~g~~~i---p~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 142 YGVPE-------FAPYDVIFVTVGVDEV---PETWFTQLKEGGRVIVP 179 (322)
T ss_pred hcccc-------cCCccEEEECCchHHh---HHHHHHhcCCCCEEEEE
Confidence 65433 3579999998654333 34567899999998884
No 63
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.56 E-value=3.5e-13 Score=105.41 Aligned_cols=106 Identities=22% Similarity=0.262 Sum_probs=86.6
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC--C-CCcEEEEecchHHHHHHHhhcCCC
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSEN 100 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~~~~~~~~~~ 100 (194)
..++++||++|||+|..+..+++..+ ..+++++|++++.++.+++++...+ . .+++++..+|+.+.+...
T Consensus 70 ~~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~------ 142 (270)
T TIGR00417 70 HPNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT------ 142 (270)
T ss_pred CCCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC------
Confidence 34678999999999999998887643 5789999999999999999886542 1 257899999998877654
Q ss_pred CCceeEEEEeCCcc-----c--cHHHHHHHHhcccCCeEEEEe
Q 029414 101 EGSFDYAFVDADKD-----N--YCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 101 ~~~fD~i~id~~~~-----~--~~~~~~~~~~~L~~gG~lv~~ 136 (194)
.++||+|++|...+ . ..++++.+.+.|+|||++++.
T Consensus 143 ~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 143 ENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 47899999997511 1 467889999999999999996
No 64
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.56 E-value=5.6e-14 Score=108.54 Aligned_cols=106 Identities=15% Similarity=0.177 Sum_probs=86.5
Q ss_pred cCCCeEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414 25 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 103 (194)
Q Consensus 25 ~~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 103 (194)
.++.+|||+|||+|..+..+++.+ .++.+++++|+++++++.+++++...+...+++++.+|+.+.. .+.
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~---------~~~ 125 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA---------IEN 125 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC---------CCC
Confidence 356799999999999999998853 2478999999999999999999998887778999999986531 245
Q ss_pred eeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414 104 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL 139 (194)
Q Consensus 104 fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~ 139 (194)
+|+|++... ......+++.+.+.|+|||.+++.+..
T Consensus 126 ~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 126 ASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred CCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 898886532 223467899999999999999997643
No 65
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=99.56 E-value=3.3e-13 Score=99.59 Aligned_cols=157 Identities=20% Similarity=0.278 Sum_probs=120.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEEcccccH--HHHHHHhhC-CCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414 10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGY--SLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 86 (194)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~--~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d 86 (194)
.+|..++++..++...+.+.++|+.++.|. .++.||.+. ..+++++||.++++.+...++.+...++.+.++|+.++
T Consensus 25 ~ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~ 104 (218)
T PF07279_consen 25 KEPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGE 104 (218)
T ss_pred CCCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecC
Confidence 467899999999999999999999877553 344443332 24799999999999999999999988887678999998
Q ss_pred h-HHHHHHHhhcCCCCCceeEEEEeCCccccH-HHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHH
Q 029414 87 A-LSVLDQLLKYSENEGSFDYAFVDADKDNYC-NYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAIL 164 (194)
Q Consensus 87 ~-~~~~~~~~~~~~~~~~fD~i~id~~~~~~~-~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 164 (194)
. .+.++.+ ...|++++|+...++. .+|+.+ ++-+.|.++|..|....+. . --
T Consensus 105 ~~e~~~~~~-------~~iDF~vVDc~~~d~~~~vl~~~-~~~~~GaVVV~~Na~~r~~------~------------~~ 158 (218)
T PF07279_consen 105 APEEVMPGL-------KGIDFVVVDCKREDFAARVLRAA-KLSPRGAVVVCYNAFSRST------N------------GF 158 (218)
T ss_pred CHHHHHhhc-------cCCCEEEEeCCchhHHHHHHHHh-ccCCCceEEEEeccccCCc------C------------Cc
Confidence 5 4567665 6899999999888877 777654 5445667777777653220 0 12
Q ss_pred HHHHHhhcCCCeEEEeeecCCeeEEEEE
Q 029414 165 DLNRSLADDPRVQLSHVALGDGITICRR 192 (194)
Q Consensus 165 ~~~~~l~~~~~~~~~~~p~~~G~~i~~~ 192 (194)
.|...++..+.+.+.+||+|.|+.|.+.
T Consensus 159 ~w~~~~~~~r~Vrsv~LPIG~GleVt~i 186 (218)
T PF07279_consen 159 SWRSVLRGRRVVRSVFLPIGKGLEVTRI 186 (218)
T ss_pred cHHHhcCCCCceeEEEeccCCCeEEEEE
Confidence 4555667778899999999999999863
No 66
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.55 E-value=1.5e-13 Score=105.67 Aligned_cols=106 Identities=12% Similarity=0.132 Sum_probs=86.7
Q ss_pred CCCeEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f 104 (194)
+..+|||+|||+|..+..++..++ ++.+++++|+++++++.|++++...+...+++++++|..+.. .+.+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~ 123 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE---------IKNA 123 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---------CCCC
Confidence 567899999999999999998752 478999999999999999999987766568999999986541 2458
Q ss_pred eEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414 105 DYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLW 140 (194)
Q Consensus 105 D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 140 (194)
|+|++... ..+...+++.+.+.|+|||.+++.+...
T Consensus 124 d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 124 SMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred CEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 98877643 2245678999999999999999987543
No 67
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.55 E-value=4.7e-14 Score=105.26 Aligned_cols=103 Identities=16% Similarity=0.196 Sum_probs=80.1
Q ss_pred HHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCC
Q 029414 21 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 100 (194)
Q Consensus 21 l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 100 (194)
.+...++.+|||+|||+|.++.++|.. +.+|+++|+++.+++.++++....+++ ++....|.... .+
T Consensus 25 ~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~--~~------ 91 (195)
T TIGR00477 25 AVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAA--AL------ 91 (195)
T ss_pred HhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhc--cc------
Confidence 334456789999999999999999984 579999999999999999988877763 66666665432 11
Q ss_pred CCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEe
Q 029414 101 EGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 101 ~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
.++||+|++... ......+++.+.+.|+|||++++-
T Consensus 92 ~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 92 NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 257999987643 234568899999999999985553
No 68
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.55 E-value=1.6e-14 Score=106.23 Aligned_cols=98 Identities=22% Similarity=0.267 Sum_probs=86.3
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 103 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 103 (194)
..++.+|.|+|||.|.+|..+++..| ...++++|.|+++++.|+++. +++++..+|..++-+. .+
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p~--------~~ 92 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKPE--------QP 92 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCCC--------Cc
Confidence 44678999999999999999999998 999999999999999997764 3899999998776443 68
Q ss_pred eeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEe
Q 029414 104 FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 104 fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
.|++|.++. .++....|..++..|.|||+|.++
T Consensus 93 ~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 93 TDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred cchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEE
Confidence 999998875 677888999999999999999996
No 69
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=2.9e-13 Score=105.52 Aligned_cols=114 Identities=18% Similarity=0.266 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHH
Q 029414 14 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ 93 (194)
Q Consensus 14 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 93 (194)
.-++|..+.. ++++|||+|||+|..++..++.. ..+++++|++|.+++.+++|++.++++..++....+..+..
T Consensus 152 cL~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLG--A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-- 225 (300)
T COG2264 152 CLEALEKLLK--KGKTVLDVGCGSGILAIAAAKLG--AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-- 225 (300)
T ss_pred HHHHHHHhhc--CCCEEEEecCChhHHHHHHHHcC--CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc--
Confidence 3444444443 78999999999999999998863 46899999999999999999999998753333333333321
Q ss_pred HhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEeccc
Q 029414 94 LLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 139 (194)
Q Consensus 94 ~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 139 (194)
..++||+|+++--..-...+...+.++++|||.++++.++
T Consensus 226 ------~~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 226 ------ENGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred ------ccCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeeh
Confidence 1368999999876556667788899999999999998755
No 70
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.54 E-value=2.9e-14 Score=95.22 Aligned_cols=93 Identities=20% Similarity=0.372 Sum_probs=74.0
Q ss_pred EEEEcccccHHHHHHHhhCCC--CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 029414 30 TIEIGVFTGYSLLLTALTIPE--DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 107 (194)
Q Consensus 30 vLeiG~G~G~~~~~la~~~~~--~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i 107 (194)
|||+|||+|..+..++..++. ..+++++|+++++++.+++++...+. +++++++|+.+.. .. .++||+|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~-~~------~~~~D~v 71 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLP-FS------DGKFDLV 71 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHH-HH------SSSEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCc-cc------CCCeeEE
Confidence 799999999999999988732 37999999999999999999988664 7899999997753 32 5799999
Q ss_pred EEeCC------ccccHHHHHHHHhcccCCe
Q 029414 108 FVDAD------KDNYCNYHERLMKLLKVGG 131 (194)
Q Consensus 108 ~id~~------~~~~~~~~~~~~~~L~~gG 131 (194)
++... ......+++.+.++|+|||
T Consensus 72 ~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 72 VCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred EEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 99432 3456788999999999998
No 71
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.54 E-value=8.4e-14 Score=112.83 Aligned_cols=113 Identities=14% Similarity=0.103 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC--CcEEEEecchHHHH
Q 029414 14 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEALSVL 91 (194)
Q Consensus 14 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~ 91 (194)
..-++..+. .....+|||+|||+|..++.++...| ..+|+++|.++.+++.++++++.++.. .+++++.+|..+..
T Consensus 217 trllL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~ 294 (378)
T PRK15001 217 ARFFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV 294 (378)
T ss_pred HHHHHHhCC-cccCCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC
Confidence 344444433 22346899999999999999999876 889999999999999999999887643 37888988875432
Q ss_pred HHHhhcCCCCCceeEEEEeCCcc--------ccHHHHHHHHhcccCCeEEEEe
Q 029414 92 DQLLKYSENEGSFDYAFVDADKD--------NYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 92 ~~~~~~~~~~~~fD~i~id~~~~--------~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
+ .++||+|+++++.. ....+++.+.+.|+|||.+++.
T Consensus 295 ~--------~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 295 E--------PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred C--------CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 1 35799999986621 2356788899999999999885
No 72
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.53 E-value=4.2e-14 Score=109.74 Aligned_cols=95 Identities=15% Similarity=0.123 Sum_probs=79.7
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414 25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f 104 (194)
.++.+|||+|||+|..+..++...+ +.+++++|+++.+++.+++. +++++.+|+.+.. . .++|
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~-~-------~~~f 90 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK-P-------KPDT 90 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC-C-------CCCc
Confidence 4578999999999999999999875 78999999999999988752 5788889986542 1 3689
Q ss_pred eEEEEeCC---ccccHHHHHHHHhcccCCeEEEEe
Q 029414 105 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 105 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
|+|++... ..+...+++.+.+.|+|||.+++.
T Consensus 91 D~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 91 DVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred eEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 99999764 456678899999999999999985
No 73
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.53 E-value=6.4e-14 Score=108.86 Aligned_cols=98 Identities=23% Similarity=0.324 Sum_probs=82.1
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 103 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 103 (194)
..++.+|||+|||+|..+..++..++ +.+++++|+++.+++.+++++ ++++++.+|..+..+ .++
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~--------~~~ 93 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQP--------PQA 93 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCC--------CCC
Confidence 34578999999999999999998876 789999999999999998764 268888888865421 368
Q ss_pred eeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEe
Q 029414 104 FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 104 fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
||+|++... ..+...+++.+.+.|+|||.+++.
T Consensus 94 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 94 LDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred ccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 999998865 346778999999999999999985
No 74
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.53 E-value=1.3e-14 Score=95.22 Aligned_cols=92 Identities=24% Similarity=0.316 Sum_probs=74.2
Q ss_pred EEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEe
Q 029414 31 IEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD 110 (194)
Q Consensus 31 LeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id 110 (194)
||+|||+|..+..++.. +..+++++|+++++++.++++.... ++.+..+|..+. +- .+++||+|++.
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l-~~------~~~sfD~v~~~ 67 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDL-PF------PDNSFDVVFSN 67 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSS-SS-------TT-EEEEEEE
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhC-cc------ccccccccccc
Confidence 89999999999999998 3789999999999999999887533 456888888665 21 15899999987
Q ss_pred CC---ccccHHHHHHHHhcccCCeEEEE
Q 029414 111 AD---KDNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 111 ~~---~~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
.. .++...+++++.+.|||||.+++
T Consensus 68 ~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 68 SVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred cceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 64 35778899999999999999986
No 75
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.53 E-value=1.4e-12 Score=100.87 Aligned_cols=108 Identities=17% Similarity=0.234 Sum_probs=82.9
Q ss_pred HHHHHHHHH-HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHH
Q 029414 15 GQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ 93 (194)
Q Consensus 15 ~~~l~~l~~-~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 93 (194)
..++..+.. ..++++|||+|||+|..++.++... ..+++++|+++.+++.+++++..+++..++.+..++
T Consensus 107 ~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g--~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~------- 177 (250)
T PRK00517 107 RLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLG--AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD------- 177 (250)
T ss_pred HHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-------
Confidence 334444443 2467899999999999998877643 347999999999999999999988875445443321
Q ss_pred HhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEeccc
Q 029414 94 LLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 139 (194)
Q Consensus 94 ~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 139 (194)
.+||+|+++........+++.+.+.|+|||.+++....
T Consensus 178 --------~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 178 --------LKADVIVANILANPLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred --------CCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 26999998876556677889999999999999997543
No 76
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.53 E-value=2.9e-13 Score=99.74 Aligned_cols=126 Identities=21% Similarity=0.253 Sum_probs=96.9
Q ss_pred cCCCCHHHHHHHHHHHHH-cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414 7 MMGTAPDAGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 85 (194)
Q Consensus 7 ~~~~~~~~~~~l~~l~~~-~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 85 (194)
+++++...+++...+... ..+.++||+.||+|..++..+... ..+++.+|.++..+...++|++..+..++++++.+
T Consensus 22 RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~ 99 (183)
T PF03602_consen 22 RPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKG 99 (183)
T ss_dssp -SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEES
T ss_pred CCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeecc
Confidence 567777777777777777 788999999999999999877653 36999999999999999999999998878999999
Q ss_pred chHHHHHHHhhcCCCCCceeEEEEeCCcc--c-cHHHHHHHH--hcccCCeEEEEec
Q 029414 86 EALSVLDQLLKYSENEGSFDYAFVDADKD--N-YCNYHERLM--KLLKVGGIAVYDN 137 (194)
Q Consensus 86 d~~~~~~~~~~~~~~~~~fD~i~id~~~~--~-~~~~~~~~~--~~L~~gG~lv~~~ 137 (194)
|+...+...... ..+||+||+|++.. . +...++.+. .+|+++|+|++.-
T Consensus 100 d~~~~l~~~~~~---~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 100 DAFKFLLKLAKK---GEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp SHHHHHHHHHHC---TS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred CHHHHHHhhccc---CCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 998888776332 57899999999833 2 256777776 7899999999964
No 77
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.52 E-value=5.7e-13 Score=105.13 Aligned_cols=103 Identities=16% Similarity=0.185 Sum_probs=84.7
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 105 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD 105 (194)
++++|||+|||+|..+..+++. + ..+++++|+++.+++.+++++..+++..++.+..++... .. .++||
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~---~~------~~~fD 227 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ---PI------EGKAD 227 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc---cc------CCCce
Confidence 5689999999999999888764 2 469999999999999999999998887677777765221 11 36899
Q ss_pred EEEEeCCccccHHHHHHHHhcccCCeEEEEeccc
Q 029414 106 YAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 139 (194)
Q Consensus 106 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 139 (194)
+|+++........++..+.+.|+|||.+++....
T Consensus 228 lVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 228 VIVANILAEVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred EEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 9999876666677889999999999999997653
No 78
>PLN02823 spermine synthase
Probab=99.52 E-value=7.2e-13 Score=106.02 Aligned_cols=106 Identities=18% Similarity=0.190 Sum_probs=86.8
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC---CCCcEEEEecchHHHHHHHhhcCCC
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG---VDHKINFIESEALSVLDQLLKYSEN 100 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~~ 100 (194)
..++++||.+|+|.|..+.++++..+ ..+++.+|++++.++.+++.+.... -+++++++.+|+..++...
T Consensus 101 ~~~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~------ 173 (336)
T PLN02823 101 HPNPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR------ 173 (336)
T ss_pred CCCCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC------
Confidence 34688999999999999999887643 5789999999999999999986432 1469999999999988653
Q ss_pred CCceeEEEEeCCcc---------ccHHHHH-HHHhcccCCeEEEEe
Q 029414 101 EGSFDYAFVDADKD---------NYCNYHE-RLMKLLKVGGIAVYD 136 (194)
Q Consensus 101 ~~~fD~i~id~~~~---------~~~~~~~-~~~~~L~~gG~lv~~ 136 (194)
.++||+|++|...+ ...++++ .+.+.|+|||+++++
T Consensus 174 ~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 174 DEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred CCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 46899999995321 1457787 899999999999885
No 79
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.51 E-value=3.5e-13 Score=104.08 Aligned_cols=118 Identities=24% Similarity=0.385 Sum_probs=92.5
Q ss_pred CCCHHHHHHHHHHHHHc--CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414 9 GTAPDAGQLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 86 (194)
Q Consensus 9 ~~~~~~~~~l~~l~~~~--~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d 86 (194)
...+....++..+.... ++.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++...+++ +++++.+|
T Consensus 68 ~p~~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d 145 (251)
T TIGR03534 68 IPRPDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLD-NVTFLQSD 145 (251)
T ss_pred cCCCChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECc
Confidence 34455555555555433 346899999999999999999876 789999999999999999999988876 79999999
Q ss_pred hHHHHHHHhhcCCCCCceeEEEEeCCcc-----------------------------ccHHHHHHHHhcccCCeEEEEe
Q 029414 87 ALSVLDQLLKYSENEGSFDYAFVDADKD-----------------------------NYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 87 ~~~~~~~~~~~~~~~~~fD~i~id~~~~-----------------------------~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
+.+..+ .++||+|+++.+.. .+..+++.+.+.|+|||.+++.
T Consensus 146 ~~~~~~--------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 146 WFEPLP--------GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred hhccCc--------CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 866321 36899999875411 0235678889999999999985
No 80
>PRK08317 hypothetical protein; Provisional
Probab=99.51 E-value=5.2e-13 Score=102.09 Aligned_cols=115 Identities=19% Similarity=0.318 Sum_probs=89.9
Q ss_pred HHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcC
Q 029414 19 AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS 98 (194)
Q Consensus 19 ~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 98 (194)
...+...++.+|||+|||+|..+..++..+++.++++++|+++..++.++++.. ....++++..+|..+.. +
T Consensus 12 ~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~~--~---- 83 (241)
T PRK08317 12 FELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGLP--F---- 83 (241)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccCC--C----
Confidence 344445667899999999999999999987447899999999999999998833 22357899988875431 1
Q ss_pred CCCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccccc
Q 029414 99 ENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWGG 142 (194)
Q Consensus 99 ~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 142 (194)
..++||+|++... ..+...+++.+.+.|+|||.+++.+..+..
T Consensus 84 -~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 129 (241)
T PRK08317 84 -PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDT 129 (241)
T ss_pred -CCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCc
Confidence 1368999998754 356788999999999999999997755433
No 81
>PRK04266 fibrillarin; Provisional
Probab=99.51 E-value=1.5e-13 Score=104.48 Aligned_cols=113 Identities=15% Similarity=0.178 Sum_probs=85.7
Q ss_pred HHHHHHHH--HHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHH
Q 029414 14 AGQLMAML--LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 91 (194)
Q Consensus 14 ~~~~l~~l--~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 91 (194)
...++..+ +...++.+|||+|||+|..+..++..++ .++|+++|+++++++.+.++.... .|+.++.+|+....
T Consensus 58 ~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~ 133 (226)
T PRK04266 58 AAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPE 133 (226)
T ss_pred HHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcc
Confidence 34444434 4455778999999999999999999886 789999999999999887776543 37899999976421
Q ss_pred --HHHhhcCCCCCceeEEEEeCCcc-ccHHHHHHHHhcccCCeEEEEe
Q 029414 92 --DQLLKYSENEGSFDYAFVDADKD-NYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 92 --~~~~~~~~~~~~fD~i~id~~~~-~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
..+ .++||+|+++...+ ....+++.+.+.|||||.+++.
T Consensus 134 ~~~~l------~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 134 RYAHV------VEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred hhhhc------cccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 111 25699999886532 2234578999999999999995
No 82
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.51 E-value=3.8e-13 Score=117.54 Aligned_cols=109 Identities=19% Similarity=0.313 Sum_probs=90.9
Q ss_pred HHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC-CcEEEEecchHHHHHHHhhcCCC
Q 029414 22 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSEN 100 (194)
Q Consensus 22 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~ 100 (194)
....++++|||+|||+|.+++.++... ..+|+++|+++.+++.++++++.+++. ++++++++|+.+++..+
T Consensus 534 ~~~~~g~rVLDlf~gtG~~sl~aa~~G--a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~------ 605 (702)
T PRK11783 534 GQMAKGKDFLNLFAYTGTASVHAALGG--AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA------ 605 (702)
T ss_pred HHhcCCCeEEEcCCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc------
Confidence 334468899999999999999999852 347999999999999999999999986 68999999999877654
Q ss_pred CCceeEEEEeCCc--------------cccHHHHHHHHhcccCCeEEEEecc
Q 029414 101 EGSFDYAFVDADK--------------DNYCNYHERLMKLLKVGGIAVYDNT 138 (194)
Q Consensus 101 ~~~fD~i~id~~~--------------~~~~~~~~~~~~~L~~gG~lv~~~~ 138 (194)
.++||+|++|++. ..+...+..+.++|+|||++++...
T Consensus 606 ~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 606 REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 3689999999762 1245677888899999999998643
No 83
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.51 E-value=1.5e-12 Score=96.62 Aligned_cols=126 Identities=10% Similarity=-0.035 Sum_probs=94.8
Q ss_pred cCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414 7 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 86 (194)
Q Consensus 7 ~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d 86 (194)
+.+.+...+.+...+.....+.++||++||+|..++.++.... .+++++|.++..++.++++++..+..++++++.+|
T Consensus 30 rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D 107 (189)
T TIGR00095 30 RPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNS 107 (189)
T ss_pred CCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehh
Confidence 3344444455555555555788999999999999999998643 48999999999999999999999887789999999
Q ss_pred hHHHHHHHhhcCCCCCceeEEEEeCCc--cccHHHHHHHH--hcccCCeEEEEec
Q 029414 87 ALSVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLM--KLLKVGGIAVYDN 137 (194)
Q Consensus 87 ~~~~~~~~~~~~~~~~~fD~i~id~~~--~~~~~~~~~~~--~~L~~gG~lv~~~ 137 (194)
+.+.+..+... ...||+||.|++. ..+...++.+. ..|+++|++++..
T Consensus 108 ~~~~l~~~~~~---~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 108 ALRALKFLAKK---PTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred HHHHHHHhhcc---CCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 98876554211 2358999999873 23444555554 4789999999863
No 84
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.51 E-value=4.3e-13 Score=108.45 Aligned_cols=105 Identities=24% Similarity=0.288 Sum_probs=88.4
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414 25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f 104 (194)
.....+||||||+|..+..+|...| +..++|+|+++.+++.+.+++...++. |+.++.+|+...+..+ ..+++
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~-----~~~s~ 193 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELL-----PSNSV 193 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhC-----CCCce
Confidence 3456899999999999999999986 889999999999999999999998886 7999999998765443 24789
Q ss_pred eEEEEeCCcc---------ccHHHHHHHHhcccCCeEEEEe
Q 029414 105 DYAFVDADKD---------NYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 105 D~i~id~~~~---------~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
|.|++..+.+ ....+++.+.+.|+|||.+.+.
T Consensus 194 D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 194 EKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred eEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 9999875311 1257899999999999999883
No 85
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.51 E-value=1e-12 Score=96.76 Aligned_cols=108 Identities=19% Similarity=0.185 Sum_probs=85.7
Q ss_pred HHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHh
Q 029414 16 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL 95 (194)
Q Consensus 16 ~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 95 (194)
.+|.......++++|||+|||+|..+..++... .+++++|+++++++.+++++...+. +++++.+|..+..
T Consensus 9 ~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~---- 79 (179)
T TIGR00537 9 LLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV---- 79 (179)
T ss_pred HHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc----
Confidence 455555556677899999999999999999864 3899999999999999999987765 5888888875531
Q ss_pred hcCCCCCceeEEEEeCCcc------------------------ccHHHHHHHHhcccCCeEEEEec
Q 029414 96 KYSENEGSFDYAFVDADKD------------------------NYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 96 ~~~~~~~~fD~i~id~~~~------------------------~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
.++||+|+++.+.. ....+++.+.++|+|||.+++..
T Consensus 80 -----~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 80 -----RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred -----CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 25899999885410 03457888999999999998854
No 86
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.49 E-value=4.4e-13 Score=113.06 Aligned_cols=101 Identities=19% Similarity=0.315 Sum_probs=83.0
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 029414 27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 106 (194)
Q Consensus 27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~ 106 (194)
+.+|||+|||+|..++.++...+ +.+++++|+|+.+++.|++++..+++.++++++.+|..+.++ .++||+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--------~~~fDl 209 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--------KQKFDF 209 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc--------CCCccE
Confidence 46899999999999999998876 789999999999999999999998887789999999765321 257999
Q ss_pred EEEeCCc-----------------------------cccHHHHHHHHhcccCCeEEEEe
Q 029414 107 AFVDADK-----------------------------DNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 107 i~id~~~-----------------------------~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
|+++++. ..+..+++.+.+.|+|||.+++.
T Consensus 210 IvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 210 IVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred EEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 9987540 01234566777899999999985
No 87
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.49 E-value=3.3e-13 Score=107.44 Aligned_cols=112 Identities=13% Similarity=0.089 Sum_probs=90.7
Q ss_pred HHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCC
Q 029414 20 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE 99 (194)
Q Consensus 20 ~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 99 (194)
......+..+|||+|||+|..+..+++.+| +.+++++|. ++.++.++++++..++.++++++.+|+.+. .+
T Consensus 143 ~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~--~~----- 213 (306)
T TIGR02716 143 EEAKLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE--SY----- 213 (306)
T ss_pred HHcCCCCCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC--CC-----
Confidence 333445668999999999999999999987 889999998 789999999999999888999999998652 11
Q ss_pred CCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEecccccc
Q 029414 100 NEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLWGG 142 (194)
Q Consensus 100 ~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 142 (194)
+.+|+|++... .......++.+.+.|+|||.+++.+..+..
T Consensus 214 --~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~ 259 (306)
T TIGR02716 214 --PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDD 259 (306)
T ss_pred --CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence 34799887653 223356899999999999999998876543
No 88
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.49 E-value=1.5e-12 Score=104.06 Aligned_cols=122 Identities=12% Similarity=0.086 Sum_probs=93.7
Q ss_pred cccCCCCHHHHHHHHHHHH----HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcE
Q 029414 5 RAMMGTAPDAGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKI 80 (194)
Q Consensus 5 ~~~~~~~~~~~~~l~~l~~----~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v 80 (194)
..++++++...+.|...+. ..++.+|||+|||+|..++.+|.. +.+|+++|.++.+++.|+++++.++++ ++
T Consensus 148 ~sF~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~-~v 223 (315)
T PRK03522 148 QSFFQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLT-NV 223 (315)
T ss_pred CeeeecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCC-ce
Confidence 3467777776666654322 235689999999999999999984 569999999999999999999999984 89
Q ss_pred EEEecchHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 81 NFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 81 ~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
+++.+|+.+..... .++||+|++|++.......+...+..++|++++++.
T Consensus 224 ~~~~~D~~~~~~~~------~~~~D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvs 273 (315)
T PRK03522 224 QFQALDSTQFATAQ------GEVPDLVLVNPPRRGIGKELCDYLSQMAPRFILYSS 273 (315)
T ss_pred EEEEcCHHHHHHhc------CCCCeEEEECCCCCCccHHHHHHHHHcCCCeEEEEE
Confidence 99999998765432 357999999988554433443444557888877774
No 89
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.48 E-value=5.5e-13 Score=102.08 Aligned_cols=107 Identities=17% Similarity=0.279 Sum_probs=88.0
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414 25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f 104 (194)
.++.+|||+|||+|..+..++...+...+++++|+++.+++.+++++...+...++.+..+|+.+... ..+.|
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~~~ 122 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF-------PDNSF 122 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC-------CCCCc
Confidence 35679999999999999999998754689999999999999999998876666678999988865321 13689
Q ss_pred eEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecc
Q 029414 105 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT 138 (194)
Q Consensus 105 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~ 138 (194)
|+|++... ..+....++.+.+.|+|||.+++.+.
T Consensus 123 D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 123 DAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred cEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 99987643 45677889999999999999988654
No 90
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.48 E-value=3.7e-13 Score=106.20 Aligned_cols=99 Identities=19% Similarity=0.264 Sum_probs=81.0
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 103 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 103 (194)
..++.+|||+|||+|..+.+++.. +.+|+++|.++.+++.++++....++ ++++...|..+. .+ .++
T Consensus 118 ~~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~--~~------~~~ 184 (287)
T PRK12335 118 TVKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSA--SI------QEE 184 (287)
T ss_pred ccCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcc--cc------cCC
Confidence 346679999999999999999984 57999999999999999999988876 688887776542 11 368
Q ss_pred eeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEE
Q 029414 104 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 104 fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
||+|++... ......+++.+.+.|+|||++++
T Consensus 185 fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 185 YDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred ccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 999987653 23567889999999999999665
No 91
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.48 E-value=5e-13 Score=106.86 Aligned_cols=108 Identities=16% Similarity=0.177 Sum_probs=82.6
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414 25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f 104 (194)
.++++|||+|||+|+.+..++...+ .+|+++|+++.++..++..-...+...++.+..++..+. +. .++|
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l-p~-------~~~F 190 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL-PA-------LKAF 190 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC-CC-------cCCc
Confidence 4578999999999999999998743 479999999988865544333333335799999888654 21 3689
Q ss_pred eEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccccc
Q 029414 105 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWGG 142 (194)
Q Consensus 105 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 142 (194)
|+|++.+. ..+...+++.+.+.|+|||.+++++....+
T Consensus 191 D~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~ 231 (322)
T PRK15068 191 DTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDG 231 (322)
T ss_pred CEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecC
Confidence 99998754 356788999999999999999998655443
No 92
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.48 E-value=1.4e-14 Score=96.31 Aligned_cols=96 Identities=24% Similarity=0.334 Sum_probs=63.8
Q ss_pred EEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEe
Q 029414 31 IEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD 110 (194)
Q Consensus 31 LeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id 110 (194)
||+|||+|..+..++..++ ..+++++|+|+.+++.+++++...... +......+..+..... ..++||+|++.
T Consensus 1 LdiGcG~G~~~~~l~~~~~-~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~fD~V~~~ 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP-DARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYD-----PPESFDLVVAS 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CC-----C----SEEEEE
T ss_pred CEeCccChHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhcc-----cccccceehhh
Confidence 7999999999999999985 899999999999999999999887754 3344443333332221 12489999987
Q ss_pred CC---ccccHHHHHHHHhcccCCeEE
Q 029414 111 AD---KDNYCNYHERLMKLLKVGGIA 133 (194)
Q Consensus 111 ~~---~~~~~~~~~~~~~~L~~gG~l 133 (194)
.. .++...+++.+.++|+|||+|
T Consensus 74 ~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 74 NVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 54 456788999999999999986
No 93
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.48 E-value=1.8e-12 Score=101.90 Aligned_cols=112 Identities=21% Similarity=0.302 Sum_probs=85.0
Q ss_pred HHHHHHHHHHc-CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHH
Q 029414 15 GQLMAMLLRLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ 93 (194)
Q Consensus 15 ~~~l~~l~~~~-~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 93 (194)
.-+|..+.+.. ++++|||+|||+|..++..++.. ..+|+++|++|.+++.|++|+..+++.+++.+.. ..+.
T Consensus 149 ~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klG--A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~--~~~~--- 221 (295)
T PF06325_consen 149 RLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLG--AKKVVAIDIDPLAVEAARENAELNGVEDRIEVSL--SEDL--- 221 (295)
T ss_dssp HHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTT--BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC--TSCT---
T ss_pred HHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcC--CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE--eccc---
Confidence 33444454443 56899999999999999988863 4689999999999999999999999987776531 1111
Q ss_pred HhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEeccc
Q 029414 94 LLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 139 (194)
Q Consensus 94 ~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 139 (194)
..++||+|+.+-...........+.++|+|||.++++..+
T Consensus 222 ------~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl 261 (295)
T PF06325_consen 222 ------VEGKFDLVVANILADVLLELAPDIASLLKPGGYLILSGIL 261 (295)
T ss_dssp ------CCS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEE
T ss_pred ------ccccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEcccc
Confidence 1378999999887666677778888999999999998766
No 94
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.47 E-value=3.2e-13 Score=105.22 Aligned_cols=106 Identities=20% Similarity=0.250 Sum_probs=83.9
Q ss_pred HHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414 23 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 102 (194)
Q Consensus 23 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 102 (194)
...++.+|||+|||+|..+..++... +.+|+++|+++.+++.+++++.. .+++.+..+|+.+. + + ..+
T Consensus 49 ~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~-~-~-----~~~ 116 (263)
T PTZ00098 49 ELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKK-D-F-----PEN 116 (263)
T ss_pred CCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccC-C-C-----CCC
Confidence 34567899999999999999998753 57999999999999999988653 34799999887642 1 1 136
Q ss_pred ceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414 103 SFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLW 140 (194)
Q Consensus 103 ~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 140 (194)
+||+|++... ..+...+++.+.+.|||||.+++.+...
T Consensus 117 ~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 117 TFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred CeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 8999998422 2366789999999999999999987643
No 95
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.46 E-value=1.4e-12 Score=101.85 Aligned_cols=118 Identities=22% Similarity=0.360 Sum_probs=90.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC-CcEEEEecchHH
Q 029414 11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALS 89 (194)
Q Consensus 11 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~ 89 (194)
.++...++... .++++||++.|++|.+++..+... ..+|+++|.|..+++.+++|+..++++ .+++++.+|+.+
T Consensus 111 qR~nR~~v~~~---~~gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~ 185 (286)
T PF10672_consen 111 QRENRKWVRKY---AKGKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFK 185 (286)
T ss_dssp GHHHHHHHHHH---CTTCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHH
T ss_pred HHhhHHHHHHH---cCCCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHH
Confidence 34555555553 468999999999999999877642 358999999999999999999999986 689999999999
Q ss_pred HHHHHhhcCCCCCceeEEEEeCC---------ccccHHHHHHHHhcccCCeEEEEec
Q 029414 90 VLDQLLKYSENEGSFDYAFVDAD---------KDNYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 90 ~~~~~~~~~~~~~~fD~i~id~~---------~~~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
.+..+.. .++||+|++|++ ..++...+..+.++|+|||.|++..
T Consensus 186 ~l~~~~~----~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 186 FLKRLKK----GGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp HHHHHHH----TT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHhc----CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 8876533 368999999987 2356778888999999999998754
No 96
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.46 E-value=6e-13 Score=98.08 Aligned_cols=114 Identities=17% Similarity=0.234 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH
Q 029414 11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 90 (194)
Q Consensus 11 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 90 (194)
++....++.. +...++.++||+|||.|..+++||+. +-.|+++|.++..++.+++..+..+++ ++....|..+.
T Consensus 16 ~~~hs~v~~a-~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~ 89 (192)
T PF03848_consen 16 TPTHSEVLEA-VPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDF 89 (192)
T ss_dssp ----HHHHHH-CTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCB
T ss_pred CCCcHHHHHH-HhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhc
Confidence 3444444443 44557899999999999999999996 779999999999999999988888875 88888886553
Q ss_pred HHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEecc
Q 029414 91 LDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNT 138 (194)
Q Consensus 91 ~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~ 138 (194)
. + .+.||+|+.... .+.....++.+...++|||+.++...
T Consensus 90 ~--~------~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 90 D--F------PEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp S---------TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred c--c------cCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 1 2 367999987533 45566788999999999999888543
No 97
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.46 E-value=1.7e-12 Score=100.37 Aligned_cols=117 Identities=15% Similarity=0.093 Sum_probs=87.5
Q ss_pred CCHHHHHHHHHHHHHc----CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414 10 TAPDAGQLMAMLLRLV----NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 85 (194)
Q Consensus 10 ~~~~~~~~l~~l~~~~----~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 85 (194)
..+.+..++....... .+.+|||+|||+|..++.++...+ +.+++++|+++.+++.+++++..++ ++++++
T Consensus 66 pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~ 140 (251)
T TIGR03704 66 PRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAG----GTVHEG 140 (251)
T ss_pred CCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcC----CEEEEe
Confidence 4455555555544322 235899999999999999998776 6799999999999999999998765 378888
Q ss_pred chHHHHHHHhhcCCCCCceeEEEEeCCcc-----------------------------ccHHHHHHHHhcccCCeEEEEe
Q 029414 86 EALSVLDQLLKYSENEGSFDYAFVDADKD-----------------------------NYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 86 d~~~~~~~~~~~~~~~~~fD~i~id~~~~-----------------------------~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
|..+.++... .++||+|++|++.- .+..+++.+.++|+|||.+++.
T Consensus 141 D~~~~l~~~~-----~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 141 DLYDALPTAL-----RGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred echhhcchhc-----CCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 8876543311 25799999997511 0236677778999999999985
No 98
>PRK14967 putative methyltransferase; Provisional
Probab=99.46 E-value=1.8e-12 Score=98.70 Aligned_cols=100 Identities=16% Similarity=0.176 Sum_probs=79.8
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414 25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f 104 (194)
.+..+|||+|||+|..+..++.. + ..+++++|+++.+++.+++++...+. +++++.+|..+.++ .++|
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~--------~~~f 102 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVE--------FRPF 102 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhcc--------CCCe
Confidence 34579999999999999999875 2 35999999999999999999988775 58888888765422 3689
Q ss_pred eEEEEeCCcc------------------------ccHHHHHHHHhcccCCeEEEEe
Q 029414 105 DYAFVDADKD------------------------NYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 105 D~i~id~~~~------------------------~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
|+|+++.+.. ....+++.+.+.|+|||.+++.
T Consensus 103 D~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 103 DVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred eEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 9999985411 0245678889999999999973
No 99
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.46 E-value=1.4e-12 Score=106.24 Aligned_cols=121 Identities=17% Similarity=0.247 Sum_probs=92.6
Q ss_pred cCCCCHHHHHHHHHHHHH-cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414 7 MMGTAPDAGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 85 (194)
Q Consensus 7 ~~~~~~~~~~~l~~l~~~-~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 85 (194)
.+...+++..++..+... .+..+|||+|||+|..++.++...+ +.+++++|+|+++++.++++++..+. +++++++
T Consensus 231 vLIPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~g 307 (423)
T PRK14966 231 VLIPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGA--RVEFAHG 307 (423)
T ss_pred ccCCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEc
Confidence 344667777777776653 3457999999999999999998765 78999999999999999999988764 7999999
Q ss_pred chHHHHHHHhhcCCCCCceeEEEEeCCc----------------------------cccHHHHHHHHhcccCCeEEEEe
Q 029414 86 EALSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 86 d~~~~~~~~~~~~~~~~~fD~i~id~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
|..+.... ..++||+|+++++. ..+..+++.+.+.|+|||.+++.
T Consensus 308 Dl~e~~l~------~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE 380 (423)
T PRK14966 308 SWFDTDMP------SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE 380 (423)
T ss_pred chhccccc------cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 98653111 13579999998751 01235566667899999999884
No 100
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.46 E-value=3.4e-12 Score=104.13 Aligned_cols=122 Identities=14% Similarity=0.124 Sum_probs=96.8
Q ss_pred ccccCCCCHHHHHHHHHHHHH----cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCc
Q 029414 4 LRAMMGTAPDAGQLMAMLLRL----VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK 79 (194)
Q Consensus 4 ~~~~~~~~~~~~~~l~~l~~~----~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~ 79 (194)
...++++++...+.|...+.. ..+.+|||+|||+|..++.+|.. ..+++++|+++.+++.|+++++.++++ +
T Consensus 207 ~~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~-~ 282 (374)
T TIGR02085 207 PQSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLD-N 282 (374)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCC-c
Confidence 446788888888887654432 35689999999999999999964 568999999999999999999999886 8
Q ss_pred EEEEecchHHHHHHHhhcCCCCCceeEEEEeCCccc-cHHHHHHHHhcccCCeEEEEe
Q 029414 80 INFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 80 v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~~ 136 (194)
++++.+|+.+..... .++||+|++|++... ...+++.+ ..++|+++++++
T Consensus 283 ~~~~~~d~~~~~~~~------~~~~D~vi~DPPr~G~~~~~l~~l-~~~~p~~ivyvs 333 (374)
T TIGR02085 283 LSFAALDSAKFATAQ------MSAPELVLVNPPRRGIGKELCDYL-SQMAPKFILYSS 333 (374)
T ss_pred EEEEECCHHHHHHhc------CCCCCEEEECCCCCCCcHHHHHHH-HhcCCCeEEEEE
Confidence 999999998776442 246999999988543 34555555 457898888885
No 101
>PRK14968 putative methyltransferase; Provisional
Probab=99.45 E-value=1.9e-12 Score=95.71 Aligned_cols=110 Identities=16% Similarity=0.215 Sum_probs=85.5
Q ss_pred HHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCc-EEEEecchHHHHHHH
Q 029414 16 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK-INFIESEALSVLDQL 94 (194)
Q Consensus 16 ~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~ 94 (194)
.++.......++++|||+|||+|..+..++.. +.+++++|.++++++.+++++...++.++ +.++.+|..+.+.
T Consensus 13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~-- 87 (188)
T PRK14968 13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR-- 87 (188)
T ss_pred HHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc--
Confidence 44444444567789999999999999999986 57999999999999999999988877533 8888888755322
Q ss_pred hhcCCCCCceeEEEEeCCcc------------------------ccHHHHHHHHhcccCCeEEEEe
Q 029414 95 LKYSENEGSFDYAFVDADKD------------------------NYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 95 ~~~~~~~~~fD~i~id~~~~------------------------~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
..+||+|+.+.+.. ....+++.+.+.|+|||.+++.
T Consensus 88 ------~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~ 147 (188)
T PRK14968 88 ------GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL 147 (188)
T ss_pred ------ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 24799999875411 1345789999999999998874
No 102
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.44 E-value=3.2e-12 Score=106.57 Aligned_cols=123 Identities=14% Similarity=0.145 Sum_probs=93.9
Q ss_pred ccCCCCHHHHHHHHHHH-H---HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEE
Q 029414 6 AMMGTAPDAGQLMAMLL-R---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKIN 81 (194)
Q Consensus 6 ~~~~~~~~~~~~l~~l~-~---~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~ 81 (194)
.++++++...+.|...+ . ..++.+|||+|||+|..++.+|... .+++++|+++++++.|++++..+++. +++
T Consensus 273 ~F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~-~v~ 348 (443)
T PRK13168 273 DFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLD-NVT 348 (443)
T ss_pred CeEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCC-ceE
Confidence 45677777655544333 2 2345799999999999999999863 59999999999999999999988875 799
Q ss_pred EEecchHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 82 FIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 82 ~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
++.+|+.+.+..... ..++||+|++|++.......++.+.+ ++|+++++++
T Consensus 349 ~~~~d~~~~l~~~~~---~~~~fD~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 349 FYHANLEEDFTDQPW---ALGGFDKVLLDPPRAGAAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred EEEeChHHhhhhhhh---hcCCCCEEEECcCCcChHHHHHHHHh-cCCCeEEEEE
Confidence 999999876543211 13579999999886655666765544 6888988885
No 103
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.44 E-value=1.4e-12 Score=103.58 Aligned_cols=108 Identities=14% Similarity=0.107 Sum_probs=80.7
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414 25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f 104 (194)
.++++|||+|||+|+.+..++...+ .+|+++|+++.++..++..-...+...++.+...+..+. +. ..+|
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l-p~-------~~~F 189 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQL-HE-------LYAF 189 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHC-CC-------CCCc
Confidence 4568999999999999999887632 479999999998876543222223234778888776553 21 2579
Q ss_pred eEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccccc
Q 029414 105 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWGG 142 (194)
Q Consensus 105 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 142 (194)
|+|++.+. ..+...+++++.+.|+|||.+++......+
T Consensus 190 D~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g 230 (314)
T TIGR00452 190 DTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDG 230 (314)
T ss_pred CEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecC
Confidence 99998764 456678999999999999999998665544
No 104
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.44 E-value=1.3e-12 Score=102.39 Aligned_cols=117 Identities=24% Similarity=0.408 Sum_probs=88.8
Q ss_pred CCHHHHHHHHHHH---HHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414 10 TAPDAGQLMAMLL---RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 86 (194)
Q Consensus 10 ~~~~~~~~l~~l~---~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d 86 (194)
..+++..++..+. ...++.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++. .....+++++.+|
T Consensus 89 pr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d 166 (275)
T PRK09328 89 PRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGD 166 (275)
T ss_pred CCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEcc
Confidence 3444455555444 234567999999999999999999886 7899999999999999999988 3334589999998
Q ss_pred hHHHHHHHhhcCCCCCceeEEEEeCCc-----------------------------cccHHHHHHHHhcccCCeEEEEe
Q 029414 87 ALSVLDQLLKYSENEGSFDYAFVDADK-----------------------------DNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 87 ~~~~~~~~~~~~~~~~~fD~i~id~~~-----------------------------~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
..+... .++||+|+++.+. ..+..+++.+.++|+|||.+++.
T Consensus 167 ~~~~~~--------~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 167 WFEPLP--------GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred ccCcCC--------CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 744221 2689999987541 11345677788999999999994
No 105
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.44 E-value=1.4e-12 Score=104.99 Aligned_cols=109 Identities=19% Similarity=0.220 Sum_probs=85.0
Q ss_pred HHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHH
Q 029414 15 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL 94 (194)
Q Consensus 15 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 94 (194)
..++..+. .....+|||+|||+|..+..+++..+ ..+++++|+++.+++.++++++.+++. .+++.+|..+. .
T Consensus 186 ~lLl~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~---~ 258 (342)
T PRK09489 186 QLLLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD---I 258 (342)
T ss_pred HHHHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc---c
Confidence 33444333 33456899999999999999999876 789999999999999999999988864 46677776432 1
Q ss_pred hhcCCCCCceeEEEEeCCc--------cccHHHHHHHHhcccCCeEEEEe
Q 029414 95 LKYSENEGSFDYAFVDADK--------DNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 95 ~~~~~~~~~fD~i~id~~~--------~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
.++||+|+++.+. .....+++.+.+.|+|||.+++.
T Consensus 259 ------~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 259 ------KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred ------CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 3689999998652 23467889999999999999773
No 106
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.44 E-value=7.5e-12 Score=93.21 Aligned_cols=126 Identities=21% Similarity=0.309 Sum_probs=99.0
Q ss_pred CeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 029414 28 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 107 (194)
Q Consensus 28 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i 107 (194)
..+||||||.|.+.+.+|...| +..++|+|+....+..+.+.+...++. |+.++.+|+...+..+.. .+++|.|
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~~l~~~~~----~~~v~~i 92 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARELLRRLFP----PGSVDRI 92 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTTHHHHHST----TTSEEEE
T ss_pred CeEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHHHHhhccc----CCchheE
Confidence 3899999999999999999997 999999999999999999999999886 999999999998887753 3789999
Q ss_pred EEeCC----c-------cccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHHHHHHhhc-CCC
Q 029414 108 FVDAD----K-------DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD-DPR 175 (194)
Q Consensus 108 ~id~~----~-------~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 175 (194)
++..+ + -....+++.+.+.|+|||.|.+.. + .....+.+.+.+.. ++.
T Consensus 93 ~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T------------D--------~~~y~~~~~~~~~~~~~~ 152 (195)
T PF02390_consen 93 YINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT------------D--------VEEYAEWMLEQFEESHPG 152 (195)
T ss_dssp EEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE------------S---------HHHHHHHHHHHHHHSTT
T ss_pred EEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe------------C--------CHHHHHHHHHHHHhcCcC
Confidence 87754 1 134788999999999999998841 1 22335566666666 577
Q ss_pred eEEE
Q 029414 176 VQLS 179 (194)
Q Consensus 176 ~~~~ 179 (194)
|...
T Consensus 153 f~~~ 156 (195)
T PF02390_consen 153 FENI 156 (195)
T ss_dssp EEEE
T ss_pred eEEc
Confidence 7755
No 107
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.44 E-value=1.7e-12 Score=97.43 Aligned_cols=103 Identities=17% Similarity=0.217 Sum_probs=77.4
Q ss_pred HHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414 23 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 102 (194)
Q Consensus 23 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 102 (194)
...++.+|||+|||+|..+..++...+ +.+++++|+++++++.|++++ + ++++.++|+.+ +. ..+
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~-----~-~~~~~~~d~~~--~~------~~~ 104 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYL-----P-NINIIQGSLFD--PF------KDN 104 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhC-----C-CCcEEEeeccC--CC------CCC
Confidence 345677999999999999999998765 789999999999999998864 2 56777888765 11 147
Q ss_pred ceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEecccccc
Q 029414 103 SFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLWGG 142 (194)
Q Consensus 103 ~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 142 (194)
+||+|++... ......+++.+.+.+ ++++++.+...+.
T Consensus 105 sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 105 FFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred CEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 8999998764 223466777787776 4677776654433
No 108
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=1.1e-11 Score=97.16 Aligned_cols=119 Identities=20% Similarity=0.375 Sum_probs=90.4
Q ss_pred CCCCHHHHHHHHHHH-HHc-CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414 8 MGTAPDAGQLMAMLL-RLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 85 (194)
Q Consensus 8 ~~~~~~~~~~l~~l~-~~~-~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 85 (194)
....+++..++..+. ... .+.+|||+|||+|..++.++...+ ..+|+++|+|+++++.|++|...+++ .++.++.+
T Consensus 90 liPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~ 167 (280)
T COG2890 90 LIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGL-VRVLVVQS 167 (280)
T ss_pred eecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEee
Confidence 345566666666643 122 222799999999999999999987 78999999999999999999999998 46777766
Q ss_pred chHHHHHHHhhcCCCCCceeEEEEeCC---cc-------------------------ccHHHHHHHHhcccCCeEEEEec
Q 029414 86 EALSVLDQLLKYSENEGSFDYAFVDAD---KD-------------------------NYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 86 d~~~~~~~~~~~~~~~~~fD~i~id~~---~~-------------------------~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
|..+ .+ .++||+|+++++ .. .+..+++.+.+.|+|||.+++.-
T Consensus 168 dlf~---~~------~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 168 DLFE---PL------RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred eccc---cc------CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence 5544 32 358999998865 11 12455677788999999999963
No 109
>PRK06922 hypothetical protein; Provisional
Probab=99.43 E-value=2.2e-12 Score=109.66 Aligned_cols=112 Identities=16% Similarity=0.254 Sum_probs=87.7
Q ss_pred HHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCC
Q 029414 20 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE 99 (194)
Q Consensus 20 ~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 99 (194)
.+....++.+|||+|||+|..+..++...+ +.+++++|+++.+++.++++....+ .++.++.+|..+. +...
T Consensus 412 ~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dL-p~~f---- 483 (677)
T PRK06922 412 IILDYIKGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINL-SSSF---- 483 (677)
T ss_pred HHhhhcCCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhC-cccc----
Confidence 344555788999999999999999998876 8999999999999999998876554 3688899998763 2211
Q ss_pred CCCceeEEEEeCC----------------ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414 100 NEGSFDYAFVDAD----------------KDNYCNYHERLMKLLKVGGIAVYDNTL 139 (194)
Q Consensus 100 ~~~~fD~i~id~~----------------~~~~~~~~~~~~~~L~~gG~lv~~~~~ 139 (194)
..++||+|++... ......+++.+.+.|||||.+++.+..
T Consensus 484 edeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 484 EKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred CCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 1468999987532 124467889999999999999997653
No 110
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=99.43 E-value=1.1e-11 Score=96.79 Aligned_cols=107 Identities=22% Similarity=0.299 Sum_probs=92.0
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC--C-CCcEEEEecchHHHHHHHhhcCCC
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSEN 100 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~~~~~~~~~~ 100 (194)
..++++||-||.|.|..+.++++..+ ..+++.+|+++..++.+++.+.... . +++++++.+|+.+++...
T Consensus 74 h~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~------ 146 (282)
T COG0421 74 HPNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC------ 146 (282)
T ss_pred CCCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC------
Confidence 33568999999999999999999875 7899999999999999999997654 2 379999999999998875
Q ss_pred CCceeEEEEeCCcc-------ccHHHHHHHHhcccCCeEEEEec
Q 029414 101 EGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 101 ~~~fD~i~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
.++||+|++|...+ ....+++.|.+.|+++|+++++.
T Consensus 147 ~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 147 EEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 35899999997522 35789999999999999999973
No 111
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.43 E-value=1.2e-12 Score=110.21 Aligned_cols=106 Identities=18% Similarity=0.246 Sum_probs=85.4
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 103 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 103 (194)
..++.+|||+|||+|..+..++... +.+++++|+++++++.|+++.. +...++++..+|..+.. + ..++
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~--~-----~~~~ 332 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKT--Y-----PDNS 332 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCC--C-----CCCC
Confidence 4456799999999999999999864 5699999999999999998765 33457999999976531 1 1368
Q ss_pred eeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414 104 FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW 140 (194)
Q Consensus 104 fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 140 (194)
||+|++... ..+...+++.+.+.|+|||.+++.+...
T Consensus 333 fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 333 FDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred EEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 999998644 4567789999999999999999986543
No 112
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.43 E-value=1.5e-12 Score=99.60 Aligned_cols=100 Identities=20% Similarity=0.323 Sum_probs=81.8
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 105 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD 105 (194)
++.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++. +++.++.+|..+... ..++||
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~-------~~~~fD 100 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPL-------EDSSFD 100 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCC-------CCCcee
Confidence 457999999999999999999876 7889999999999998887653 378888888865321 146899
Q ss_pred EEEEeCC---ccccHHHHHHHHhcccCCeEEEEecc
Q 029414 106 YAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT 138 (194)
Q Consensus 106 ~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~ 138 (194)
+|++... ..+....++.+.+.|+|||.+++...
T Consensus 101 ~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 101 LIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred EEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 9998754 34677889999999999999998643
No 113
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.43 E-value=7.2e-12 Score=104.31 Aligned_cols=120 Identities=18% Similarity=0.227 Sum_probs=96.1
Q ss_pred HHHHHHHHH--HHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHH
Q 029414 14 AGQLMAMLL--RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 91 (194)
Q Consensus 14 ~~~~l~~l~--~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 91 (194)
.+.+...++ ...++.+|||++++.|.-|..+|..+...+.+++.|+++..+...++++++.|+. ++.+...|+....
T Consensus 99 sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~ 177 (470)
T PRK11933 99 SSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFG 177 (470)
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhh
Confidence 333334444 4457789999999999999999999876789999999999999999999999986 7899988987653
Q ss_pred HHHhhcCCCCCceeEEEEeCCcc-------c------------------cHHHHHHHHhcccCCeEEEEecccc
Q 029414 92 DQLLKYSENEGSFDYAFVDADKD-------N------------------YCNYHERLMKLLKVGGIAVYDNTLW 140 (194)
Q Consensus 92 ~~~~~~~~~~~~fD~i~id~~~~-------~------------------~~~~~~~~~~~L~~gG~lv~~~~~~ 140 (194)
..+ .+.||.|++|++.+ + ....++.++++|||||+||.+.+..
T Consensus 178 ~~~------~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 178 AAL------PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred hhc------hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 332 35799999997521 1 1567888899999999999987653
No 114
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.43 E-value=7.6e-12 Score=104.04 Aligned_cols=124 Identities=15% Similarity=0.111 Sum_probs=94.6
Q ss_pred cccCCCCHHHHHHHHHHHH----HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcE
Q 029414 5 RAMMGTAPDAGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKI 80 (194)
Q Consensus 5 ~~~~~~~~~~~~~l~~l~~----~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v 80 (194)
..+++.++...+.|...+. ..+..+|||+|||+|..++.+|... .+|+++|+++++++.|++++..+++. ++
T Consensus 267 ~~F~Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~-nv 342 (431)
T TIGR00479 267 RDFFQVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIA-NV 342 (431)
T ss_pred CceeecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCC-ce
Confidence 3466677766654444332 2345799999999999999999863 48999999999999999999998875 89
Q ss_pred EEEecchHHHHHHHhhcCCCCCceeEEEEeCCccc-cHHHHHHHHhcccCCeEEEEe
Q 029414 81 NFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 81 ~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~~ 136 (194)
+++.+|+.+.++.+... ..+||+|++|++... ...+++.+. .++|+++++++
T Consensus 343 ~~~~~d~~~~l~~~~~~---~~~~D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyvs 395 (431)
T TIGR00479 343 EFLAGTLETVLPKQPWA---GQIPDVLLLDPPRKGCAAEVLRTII-ELKPERIVYVS 395 (431)
T ss_pred EEEeCCHHHHHHHHHhc---CCCCCEEEECcCCCCCCHHHHHHHH-hcCCCEEEEEc
Confidence 99999998876553211 357999999988544 566666654 58898887774
No 115
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.43 E-value=1.8e-12 Score=104.19 Aligned_cols=115 Identities=18% Similarity=0.206 Sum_probs=91.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH
Q 029414 11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 90 (194)
Q Consensus 11 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 90 (194)
.+..+..+..++...++.+|||+|||+|..++..+.. +.+++++|+++.++..++++++..++++ +.+..+|+.+.
T Consensus 167 ~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l 242 (329)
T TIGR01177 167 DPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKL 242 (329)
T ss_pred CHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcC
Confidence 4455666666666667789999999999998887663 5799999999999999999999999874 88999998763
Q ss_pred HHHHhhcCCCCCceeEEEEeCCc------------cccHHHHHHHHhcccCCeEEEEe
Q 029414 91 LDQLLKYSENEGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 91 ~~~~~~~~~~~~~fD~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
+.. .++||+|++|++. ..+..+++.+.+.|+|||.+++-
T Consensus 243 -~~~------~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 243 -PLS------SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred -Ccc------cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 211 3689999998651 11467889999999999999884
No 116
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.42 E-value=9.5e-13 Score=101.92 Aligned_cols=96 Identities=16% Similarity=0.261 Sum_probs=76.8
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 105 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD 105 (194)
++.+|||+|||+|..+..++.. +.+++++|+++.+++.++++.. ...++.+|..+. + + ..++||
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~-~-~-----~~~~fD 105 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESL-P-L-----ATATFD 105 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccC-c-C-----CCCcEE
Confidence 4679999999999999988864 5799999999999999987642 245677887553 1 1 146899
Q ss_pred EEEEeCC---ccccHHHHHHHHhcccCCeEEEEec
Q 029414 106 YAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 106 ~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
+|++... ..+...++.++.+.|+|||.+++..
T Consensus 106 ~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 106 LAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred EEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 9998754 4567788999999999999999864
No 117
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=1.8e-12 Score=100.76 Aligned_cols=113 Identities=21% Similarity=0.236 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH
Q 029414 11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 90 (194)
Q Consensus 11 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 90 (194)
.....-+|..+.....+ +|||+|||.|..++.+|+..| ..+++.+|.+..+++.+|+++..++++ +..++.+|..+.
T Consensus 144 D~GS~lLl~~l~~~~~~-~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~-~~~v~~s~~~~~ 220 (300)
T COG2813 144 DKGSRLLLETLPPDLGG-KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVE-NTEVWASNLYEP 220 (300)
T ss_pred ChHHHHHHHhCCccCCC-cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCC-ccEEEEeccccc
Confidence 34444455555544444 899999999999999999987 899999999999999999999999876 446777776553
Q ss_pred HHHHhhcCCCCCceeEEEEeCCc----ccc----HHHHHHHHhcccCCeEEEE
Q 029414 91 LDQLLKYSENEGSFDYAFVDADK----DNY----CNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 91 ~~~~~~~~~~~~~fD~i~id~~~----~~~----~~~~~~~~~~L~~gG~lv~ 135 (194)
. .++||+|+++++. ... .++++.+.+.|++||-|.+
T Consensus 221 v---------~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~i 264 (300)
T COG2813 221 V---------EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWI 264 (300)
T ss_pred c---------cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEE
Confidence 2 3589999999872 222 3788999999999999887
No 118
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.42 E-value=2.9e-12 Score=97.07 Aligned_cols=106 Identities=21% Similarity=0.302 Sum_probs=85.5
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 103 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 103 (194)
..++.+|||+|||+|..+..+++..+...+++++|+++..++.+++++. ...++++..+|..+... ..++
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~-------~~~~ 106 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPF-------EDNS 106 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCC-------CCCc
Confidence 3467899999999999999999988633799999999999999998875 33478999988866421 1368
Q ss_pred eeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414 104 FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL 139 (194)
Q Consensus 104 fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~ 139 (194)
||+|++... ..+...+++.+.+.|+|||.+++.+..
T Consensus 107 ~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 107 FDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred EEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 999987643 456778899999999999999986543
No 119
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.40 E-value=2.5e-12 Score=102.90 Aligned_cols=100 Identities=16% Similarity=0.129 Sum_probs=80.6
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 105 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD 105 (194)
++.+|||+|||+|..+..+++..+ ..+++++|.++++++.++++... .+++++.+|..+.. . ..++||
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp-~------~~~sFD 180 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLP-F------PTDYAD 180 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCC-C------CCCcee
Confidence 457999999999999999988775 67999999999999999987641 36888999986531 1 146899
Q ss_pred EEEEeCC---ccccHHHHHHHHhcccCCeEEEEec
Q 029414 106 YAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 106 ~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
+|++... ..+....++++.+.|+|||.+++.+
T Consensus 181 vVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred EEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 9998654 3455678999999999999998743
No 120
>PRK03612 spermidine synthase; Provisional
Probab=99.40 E-value=3e-12 Score=108.53 Aligned_cols=107 Identities=19% Similarity=0.312 Sum_probs=85.4
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHH--HHHc---CC-CCcEEEEecchHHHHHHHhhc
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPI--IKKA---GV-DHKINFIESEALSVLDQLLKY 97 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~--~~~~---~~-~~~v~~~~~d~~~~~~~~~~~ 97 (194)
..++++||++|+|+|..+..+++. +...+++.+|+|++.++.++++ +... .. +++++++.+|+.+.+...
T Consensus 295 ~~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~--- 370 (521)
T PRK03612 295 SARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL--- 370 (521)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC---
Confidence 357899999999999999999875 3247999999999999999994 3321 12 258999999998877653
Q ss_pred CCCCCceeEEEEeCCcc--------ccHHHHHHHHhcccCCeEEEEec
Q 029414 98 SENEGSFDYAFVDADKD--------NYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 98 ~~~~~~fD~i~id~~~~--------~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
.++||+|++|...+ ...++++.+.+.|+|||+++++.
T Consensus 371 ---~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 371 ---AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred ---CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 46899999996522 12468899999999999999964
No 121
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.40 E-value=4.7e-13 Score=101.32 Aligned_cols=100 Identities=19% Similarity=0.189 Sum_probs=78.1
Q ss_pred CeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC-Cc----EEEEecchHHHHHHHhhcCCCCC
Q 029414 28 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HK----INFIESEALSVLDQLLKYSENEG 102 (194)
Q Consensus 28 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~----v~~~~~d~~~~~~~~~~~~~~~~ 102 (194)
++|||+|||+|-.+..||+. +..|+++|.++++++.|+++....... .+ +++...+.++. .+
T Consensus 91 ~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~----------~~ 157 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL----------TG 157 (282)
T ss_pred ceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc----------cc
Confidence 67999999999999999997 569999999999999999994333222 22 44444444332 46
Q ss_pred ceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414 103 SFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW 140 (194)
Q Consensus 103 ~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 140 (194)
+||.|++.-. ..+...+++.+.++|+|||.+++.+..+
T Consensus 158 ~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 158 KFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred ccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhh
Confidence 7999998754 4567889999999999999999977543
No 122
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=99.38 E-value=4.6e-11 Score=92.11 Aligned_cols=107 Identities=19% Similarity=0.211 Sum_probs=86.8
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCC---CCcEEEEecchHHHHHHHhhcCCC
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV---DHKINFIESEALSVLDQLLKYSEN 100 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~~ 100 (194)
..++++||-||.|.|..+..+++..+ ..+++.+|+++..++.+++.+..... +++++++.+|+..++.+.
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~~-~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~------ 146 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHPP-VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET------ 146 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTSTT--SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS------
T ss_pred CCCcCceEEEcCCChhhhhhhhhcCC-cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc------
Confidence 34689999999999999999987643 67999999999999999999875322 369999999999988774
Q ss_pred CC-ceeEEEEeCCc-------cccHHHHHHHHhcccCCeEEEEec
Q 029414 101 EG-SFDYAFVDADK-------DNYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 101 ~~-~fD~i~id~~~-------~~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
.+ +||+|++|... ....++++.+.+.|+|||+++++.
T Consensus 147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 147 QEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp SST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 34 89999999752 235789999999999999999974
No 123
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.38 E-value=2.1e-11 Score=88.90 Aligned_cols=125 Identities=18% Similarity=0.194 Sum_probs=98.3
Q ss_pred cCCCCHHHHHHHHHHHH-HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414 7 MMGTAPDAGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 85 (194)
Q Consensus 7 ~~~~~~~~~~~l~~l~~-~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 85 (194)
++++++-.+.+...+.. ...+.++||+.+|+|..++..+... ..+++.+|.+...+...++|++..++..+.+++..
T Consensus 23 RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG--A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~ 100 (187)
T COG0742 23 RPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG--AARVVFVEKDRKAVKILKENLKALGLEGEARVLRN 100 (187)
T ss_pred CCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC--CceEEEEecCHHHHHHHHHHHHHhCCccceEEEee
Confidence 56677766777777766 4788999999999999999987763 36999999999999999999999998889999999
Q ss_pred chHHHHHHHhhcCCCCCceeEEEEeCCcc--ccHHHHHHH----HhcccCCeEEEEec
Q 029414 86 EALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERL----MKLLKVGGIAVYDN 137 (194)
Q Consensus 86 d~~~~~~~~~~~~~~~~~fD~i~id~~~~--~~~~~~~~~----~~~L~~gG~lv~~~ 137 (194)
|+...++.... .++||+||+|++.. ......... ...|+|+|.+++..
T Consensus 101 da~~~L~~~~~----~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 101 DALRALKQLGT----REPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred cHHHHHHhcCC----CCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 99977777632 23599999999843 221122222 26799999999964
No 124
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.38 E-value=3.8e-12 Score=107.07 Aligned_cols=106 Identities=25% Similarity=0.301 Sum_probs=80.4
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 103 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 103 (194)
..+.++|||+|||+|..+..++.. ..+++++|+++++++.+++.. +..++++++.+|+......+ ..++
T Consensus 35 ~~~~~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~d~~~~~~~~-----~~~~ 103 (475)
T PLN02336 35 PYEGKSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKNESIN---GHYKNVKFMCADVTSPDLNI-----SDGS 103 (475)
T ss_pred ccCCCEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHh---ccCCceEEEEecccccccCC-----CCCC
Confidence 335679999999999999999986 359999999999998776532 22347899999885421111 1468
Q ss_pred eeEEEEeCCc-----cccHHHHHHHHhcccCCeEEEEecccc
Q 029414 104 FDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLW 140 (194)
Q Consensus 104 fD~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~ 140 (194)
||+|++.... .....+++.+.+.|+|||++++.+..+
T Consensus 104 fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~ 145 (475)
T PLN02336 104 VDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCF 145 (475)
T ss_pred EEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 9999987641 224678899999999999999977554
No 125
>PTZ00146 fibrillarin; Provisional
Probab=99.38 E-value=6.7e-12 Score=97.89 Aligned_cols=106 Identities=16% Similarity=0.129 Sum_probs=78.0
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 103 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 103 (194)
..+..+|||+|||+|.++..+|..+.+.++|+++|+++++.+...+..... .|+.++.+|+......... .+.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~----~~~ 202 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRML----VPM 202 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcc----cCC
Confidence 346679999999999999999999876789999999987654444433322 3788899997542111100 257
Q ss_pred eeEEEEeCCccccH-HHHHHHHhcccCCeEEEEe
Q 029414 104 FDYAFVDADKDNYC-NYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 104 fD~i~id~~~~~~~-~~~~~~~~~L~~gG~lv~~ 136 (194)
||+||+|...++.. .++.++.+.|||||.+++.
T Consensus 203 vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 203 VDVIFADVAQPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEE
Confidence 99999998754433 4456788999999999993
No 126
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.37 E-value=7.1e-12 Score=90.11 Aligned_cols=106 Identities=25% Similarity=0.305 Sum_probs=78.2
Q ss_pred HHHHHHHHHH-HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHH
Q 029414 14 AGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD 92 (194)
Q Consensus 14 ~~~~l~~l~~-~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 92 (194)
...++..+.. ..+..+|||+|||.|..+..++.. +.+++++|+++..++. .+......+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~ 74 (161)
T PF13489_consen 9 YADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPPF 74 (161)
T ss_dssp HHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH-----------TTSEEEEEECHTHHC
T ss_pred HHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhhc
Confidence 3455565664 567889999999999999999775 4499999999988876 122222222222211
Q ss_pred HHhhcCCCCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414 93 QLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW 140 (194)
Q Consensus 93 ~~~~~~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 140 (194)
. .++||+|++... .++...+++.+.++|||||++++.....
T Consensus 75 ~-------~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 75 P-------DGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp H-------SSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred c-------ccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 1 479999999865 4577899999999999999999987653
No 127
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.37 E-value=1.5e-11 Score=94.13 Aligned_cols=112 Identities=19% Similarity=0.245 Sum_probs=87.7
Q ss_pred HHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHH
Q 029414 15 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL 94 (194)
Q Consensus 15 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 94 (194)
.+++.......++.+|||+|||+|..+..+++. +.+++++|+++..++.+++++...+. ++++...+..+.....
T Consensus 37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~ 111 (233)
T PRK05134 37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEH 111 (233)
T ss_pred HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhc
Confidence 345555544556789999999999999988875 46899999999999999999877664 5778888876654322
Q ss_pred hhcCCCCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEec
Q 029414 95 LKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 95 ~~~~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
.++||+|++... ..+....++.+.+.|+|||.+++..
T Consensus 112 ------~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 112 ------PGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred ------CCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEe
Confidence 478999988643 3456778899999999999999864
No 128
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.37 E-value=7.5e-12 Score=102.29 Aligned_cols=100 Identities=17% Similarity=0.215 Sum_probs=80.4
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 103 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 103 (194)
..++.+|||||||+|..+..+++.. +.+|+++|+++++++.++++.. ++ .+++..+|..+. .++
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l----------~~~ 228 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL----------NGQ 228 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc----------CCC
Confidence 3466799999999999999999864 5699999999999999999874 32 477888876442 368
Q ss_pred eeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414 104 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL 139 (194)
Q Consensus 104 fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~ 139 (194)
||.|+.... ..++..+++.+.+.|+|||.+++....
T Consensus 229 fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 229 FDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred CCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 999986543 234578899999999999999997654
No 129
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.36 E-value=2.1e-11 Score=92.42 Aligned_cols=104 Identities=24% Similarity=0.350 Sum_probs=90.1
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 029414 27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 106 (194)
Q Consensus 27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~ 106 (194)
...+||||||.|.+.+.+|...| +.-++|||+....+..+.+.+.+.+++ |++++.+|+.++++.+.+ .++.|-
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~----~~sl~~ 122 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIP----DGSLDK 122 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCC----CCCeeE
Confidence 35899999999999999999988 889999999999999999999999987 999999999999888743 357888
Q ss_pred EEEeC---Cc--------cccHHHHHHHHhcccCCeEEEEe
Q 029414 107 AFVDA---DK--------DNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 107 i~id~---~~--------~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
|++.- +. --...+++.+.+.|+|||.|.+.
T Consensus 123 I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 123 IYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred EEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 87663 31 12578899999999999999984
No 130
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.36 E-value=6e-12 Score=94.98 Aligned_cols=101 Identities=13% Similarity=0.120 Sum_probs=75.1
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCC--------------CCcEEEEecchHHHH
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--------------DHKINFIESEALSVL 91 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--------------~~~v~~~~~d~~~~~ 91 (194)
++.+|||+|||.|..+++||.. +..|+++|+++.+++.+.+. .++ ..+++++++|..+..
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~ 107 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRYRAGNIEIFCGDFFALT 107 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHH---cCCCcceeccccceeeecCceEEEEccCCCCC
Confidence 5579999999999999999985 67999999999999975332 121 236889999987753
Q ss_pred HHHhhcCCCCCceeEEEEeC-----CccccHHHHHHHHhcccCCeEEEEecc
Q 029414 92 DQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNT 138 (194)
Q Consensus 92 ~~~~~~~~~~~~fD~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~ 138 (194)
... .+.||.|+-.. .......+++.+.++|+|||++++...
T Consensus 108 ~~~------~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 108 AAD------LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred ccc------CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 221 25688876432 244556789999999999998666433
No 131
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.35 E-value=6.1e-12 Score=98.55 Aligned_cols=94 Identities=20% Similarity=0.263 Sum_probs=72.9
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCC--CEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPED--GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 103 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 103 (194)
+..+|||+|||+|..+..++..++.. ..++++|+++.+++.|+++. +++.+..+|+.+. + + ..++
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~l-p-~-----~~~s 151 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRL-P-F-----ADQS 151 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccC-C-C-----cCCc
Confidence 44689999999999999999876532 37999999999999987753 3688888887653 2 1 1468
Q ss_pred eeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
||+|+..... ..++++.+.|+|||.+++.
T Consensus 152 fD~I~~~~~~----~~~~e~~rvLkpgG~li~~ 180 (272)
T PRK11088 152 LDAIIRIYAP----CKAEELARVVKPGGIVITV 180 (272)
T ss_pred eeEEEEecCC----CCHHHHHhhccCCCEEEEE
Confidence 9999875432 2357788999999999984
No 132
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.1e-10 Score=84.69 Aligned_cols=112 Identities=18% Similarity=0.266 Sum_probs=87.6
Q ss_pred ccccccCCCCHHHHHHHHHHHH--HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCc
Q 029414 2 LILRAMMGTAPDAGQLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK 79 (194)
Q Consensus 2 ~~~~~~~~~~~~~~~~l~~l~~--~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~ 79 (194)
+.|.++++..+..+.+|...-. ...+++|+|+|||||..++..+... ..+|+|+|+++++++.+++|..+ +..+
T Consensus 19 ~~LEQY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lG--a~~V~~vdiD~~a~ei~r~N~~~--l~g~ 94 (198)
T COG2263 19 LGLEQYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLG--ASRVLAVDIDPEALEIARANAEE--LLGD 94 (198)
T ss_pred ccceecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcC--CcEEEEEecCHHHHHHHHHHHHh--hCCc
Confidence 3567788888877777765532 2256789999999999999887763 37999999999999999999998 3458
Q ss_pred EEEEecchHHHHHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcc
Q 029414 80 INFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLL 127 (194)
Q Consensus 80 v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L 127 (194)
+.++.+|..++ .+++|.++++++ +.....+++.+++.-
T Consensus 95 v~f~~~dv~~~----------~~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s 137 (198)
T COG2263 95 VEFVVADVSDF----------RGKFDTVIMNPPFGSQRRHADRPFLLKALEIS 137 (198)
T ss_pred eEEEEcchhhc----------CCccceEEECCCCccccccCCHHHHHHHHHhh
Confidence 99999998765 578999999876 334466777776664
No 133
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.35 E-value=3.8e-11 Score=97.55 Aligned_cols=126 Identities=13% Similarity=0.098 Sum_probs=94.5
Q ss_pred ccccCCCCHHHHHHHHHHHHH-cC--CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcE
Q 029414 4 LRAMMGTAPDAGQLMAMLLRL-VN--AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKI 80 (194)
Q Consensus 4 ~~~~~~~~~~~~~~l~~l~~~-~~--~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v 80 (194)
...++++++...+.|...+.. .+ +.++||++||+|..++.++... .+|+++|.++.+++.+++++..+++. ++
T Consensus 181 ~~sF~Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~-~v 256 (362)
T PRK05031 181 ENSFTQPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGID-NV 256 (362)
T ss_pred CCCeeccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCC-cE
Confidence 346888888877777766543 22 3579999999999999999864 48999999999999999999999886 89
Q ss_pred EEEecchHHHHHHHhhcCC---------CCCceeEEEEeCCccc-cHHHHHHHHhcccCCeEEEEe
Q 029414 81 NFIESEALSVLDQLLKYSE---------NEGSFDYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 81 ~~~~~d~~~~~~~~~~~~~---------~~~~fD~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~~ 136 (194)
+++.+|+.+.++.+..... ...+||+|++|++... ....++.+.+ |+++++++
T Consensus 257 ~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~---~~~ivyvS 319 (362)
T PRK05031 257 QIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA---YERILYIS 319 (362)
T ss_pred EEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHc---cCCEEEEE
Confidence 9999999887765421100 0125899999998543 3444455533 67877775
No 134
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.33 E-value=3.4e-11 Score=95.64 Aligned_cols=124 Identities=11% Similarity=0.082 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHH-----HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414 11 APDAGQLMAMLLR-----LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 85 (194)
Q Consensus 11 ~~~~~~~l~~l~~-----~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 85 (194)
.+...++|...+. ..++.+|||+|||+|..+..++..++...+++++|+|+++++.+++++......-++..+++
T Consensus 43 tr~E~~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~g 122 (301)
T TIGR03438 43 TRTEAAILERHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICA 122 (301)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEE
Confidence 3334455554433 23558999999999999999998875457999999999999999998875432235777899
Q ss_pred chHHHHHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEe
Q 029414 86 EALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 86 d~~~~~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
|..+..+..... ..+...+++++.. ..+...+++.+.+.|+|||.+++.
T Consensus 123 D~~~~~~~~~~~--~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 123 DFTQPLALPPEP--AAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred cccchhhhhccc--ccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 987643322100 0012344454432 345667899999999999999874
No 135
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.33 E-value=1.3e-11 Score=93.49 Aligned_cols=98 Identities=11% Similarity=0.127 Sum_probs=74.6
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCC--------------CCcEEEEecchHHHH
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--------------DHKINFIESEALSVL 91 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--------------~~~v~~~~~d~~~~~ 91 (194)
+..+||++|||.|..+++||.. +.+|+++|+++.+++.+.+ +.++ ..++++.++|..+..
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT 110 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCC
Confidence 5579999999999999999985 7799999999999997642 2222 246889999987753
Q ss_pred HHHhhcCCCCCceeEEEEe-----CCccccHHHHHHHHhcccCCeEEEE
Q 029414 92 DQLLKYSENEGSFDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 92 ~~~~~~~~~~~~fD~i~id-----~~~~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
+.. .+.||+|+-. ...+....+++.+.++|+|||++++
T Consensus 111 ~~~------~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 111 AAD------LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred ccc------CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 321 3579998832 2345567889999999999986443
No 136
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.33 E-value=3.9e-11 Score=91.23 Aligned_cols=117 Identities=20% Similarity=0.194 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHH----cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecch
Q 029414 12 PDAGQLMAMLLRL----VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 87 (194)
Q Consensus 12 ~~~~~~l~~l~~~----~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 87 (194)
+...+++...+.. .++.+|||+|||+|..+..++.. ..+++++|.++..++.+++++...+.. ++++..+|+
T Consensus 27 ~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~ 102 (224)
T TIGR01983 27 PLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSV 102 (224)
T ss_pred HHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCH
Confidence 3334555555543 24789999999999999998875 347999999999999999998877653 688888888
Q ss_pred HHHHHHHhhcCCCCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecc
Q 029414 88 LSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT 138 (194)
Q Consensus 88 ~~~~~~~~~~~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~ 138 (194)
.+..... .++||+|++... ..+...+++.+.+.|+|||.+++...
T Consensus 103 ~~~~~~~------~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 103 EDLAEKG------AKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred HHhhcCC------CCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 7654321 368999998643 45667889999999999999998643
No 137
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.32 E-value=3.1e-11 Score=91.61 Aligned_cols=99 Identities=18% Similarity=0.239 Sum_probs=79.1
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414 25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f 104 (194)
.++.+|||+|||+|..+..++.. +.+++++|+++++++.+++++...+...++.+..+|..+. .++|
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----------~~~f 120 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL----------CGEF 120 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC----------CCCc
Confidence 45789999999999999999875 4699999999999999999998777656899999997653 2579
Q ss_pred eEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEe
Q 029414 105 DYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 105 D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
|+|++... .......+..+.+.+++++++.+.
T Consensus 121 D~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 121 DIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred CEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 99986432 233456678888888887777764
No 138
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.32 E-value=2.3e-11 Score=91.68 Aligned_cols=99 Identities=15% Similarity=0.198 Sum_probs=73.0
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcCCCCC
Q 029414 25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEG 102 (194)
Q Consensus 25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~ 102 (194)
.++.+|||+|||+|.++..+++..++.++|+++|+++. ... ++++++++|+.+. ++.+... ...+
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~-~~v~~i~~D~~~~~~~~~i~~~-~~~~ 116 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPI-VGVDFLQGDFRDELVLKALLER-VGDS 116 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCC-CCcEEEecCCCChHHHHHHHHH-hCCC
Confidence 45679999999999999999998765689999999881 122 3689999998763 2222111 0146
Q ss_pred ceeEEEEeCCc---c----c-------cHHHHHHHHhcccCCeEEEEe
Q 029414 103 SFDYAFVDADK---D----N-------YCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 103 ~fD~i~id~~~---~----~-------~~~~~~~~~~~L~~gG~lv~~ 136 (194)
+||+|+++... . + ...+++.+.+.|+|||.+++.
T Consensus 117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 89999988631 0 1 135788899999999999995
No 139
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.31 E-value=9.4e-12 Score=92.04 Aligned_cols=154 Identities=16% Similarity=0.109 Sum_probs=105.8
Q ss_pred CCCHHHHHHHHHHHHHcC-CC-eEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414 9 GTAPDAGQLMAMLLRLVN-AK-KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 86 (194)
Q Consensus 9 ~~~~~~~~~l~~l~~~~~-~~-~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d 86 (194)
+.++....++..|.+..+ .. +|||||||+|..+.+||..+| ..+....|.++......+..+...++++-...+.-|
T Consensus 6 AaeRNk~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lD 84 (204)
T PF06080_consen 6 AAERNKDPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALD 84 (204)
T ss_pred hhhhCHhHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEee
Confidence 345566667777766543 34 499999999999999999998 889999999999988999998888876222234434
Q ss_pred hHHHHHHHhhc-CCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchH
Q 029414 87 ALSVLDQLLKY-SENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSR 160 (194)
Q Consensus 87 ~~~~~~~~~~~-~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~ 160 (194)
+.+..-.+... ....++||+||+-.. .+....+|+.+.++|++||.+++...+..+....++.
T Consensus 85 v~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~S----------- 153 (204)
T PF06080_consen 85 VSAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSES----------- 153 (204)
T ss_pred cCCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcH-----------
Confidence 33321111000 001358999997532 4566888999999999999999988776654433322
Q ss_pred HHHHHHHHHhhc-CCCe
Q 029414 161 QAILDLNRSLAD-DPRV 176 (194)
Q Consensus 161 ~~~~~~~~~l~~-~~~~ 176 (194)
-++|...|+. +|.+
T Consensus 154 --N~~FD~sLr~rdp~~ 168 (204)
T PF06080_consen 154 --NAAFDASLRSRDPEW 168 (204)
T ss_pred --HHHHHHHHhcCCCCc
Confidence 4667666764 4543
No 140
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.31 E-value=2.4e-11 Score=92.57 Aligned_cols=125 Identities=19% Similarity=0.320 Sum_probs=96.1
Q ss_pred cCCCCHHHHHHHHHHHHHc------CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcE
Q 029414 7 MMGTAPDAGQLMAMLLRLV------NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKI 80 (194)
Q Consensus 7 ~~~~~~~~~~~l~~l~~~~------~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v 80 (194)
.+...+++++++....... ++..+||+|||+|..++.++..++ .++++++|.++.++..|.+|..+..+.+++
T Consensus 123 VlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i 201 (328)
T KOG2904|consen 123 VLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRI 201 (328)
T ss_pred eeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCce
Confidence 4566777777777766633 456799999999999999999998 999999999999999999999999998888
Q ss_pred EEEe----cchHHHHHHHhhcCCCCCceeEEEEeCCc-----------------------------cccHHHHHHHHhcc
Q 029414 81 NFIE----SEALSVLDQLLKYSENEGSFDYAFVDADK-----------------------------DNYCNYHERLMKLL 127 (194)
Q Consensus 81 ~~~~----~d~~~~~~~~~~~~~~~~~fD~i~id~~~-----------------------------~~~~~~~~~~~~~L 127 (194)
.+++ +|.....+.+ .+++|+++.+++. .....++..+.++|
T Consensus 202 ~v~~~~me~d~~~~~~l~------~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~L 275 (328)
T KOG2904|consen 202 EVIHNIMESDASDEHPLL------EGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRML 275 (328)
T ss_pred EEEecccccccccccccc------cCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhc
Confidence 8874 3433332222 4789999877540 11234455667999
Q ss_pred cCCeEEEEecc
Q 029414 128 KVGGIAVYDNT 138 (194)
Q Consensus 128 ~~gG~lv~~~~ 138 (194)
+|||.+.+.-.
T Consensus 276 q~gg~~~le~~ 286 (328)
T KOG2904|consen 276 QPGGFEQLELV 286 (328)
T ss_pred ccCCeEEEEec
Confidence 99999999643
No 141
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.31 E-value=8e-11 Score=96.04 Aligned_cols=120 Identities=15% Similarity=0.209 Sum_probs=93.5
Q ss_pred cCCCCHHHHHHHHHHH----HHc-CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEE
Q 029414 7 MMGTAPDAGQLMAMLL----RLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKIN 81 (194)
Q Consensus 7 ~~~~~~~~~~~l~~l~----~~~-~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~ 81 (194)
+++.......-|..++ ... ...+|||++||+|..++.+|...+ ..+|+++|+++++++.+++|++.+++. +++
T Consensus 33 Fyqp~~~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~ 110 (382)
T PRK04338 33 FYNPRMELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLE-NEK 110 (382)
T ss_pred eeCccccchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-ceE
Confidence 4444444444444332 222 235899999999999999998754 568999999999999999999999886 678
Q ss_pred EEecchHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 82 FIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 82 ~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
+..+|+.+.+.. .++||+|++|+. .....+++.+.+.+++||++.+.
T Consensus 111 v~~~Da~~~l~~-------~~~fD~V~lDP~-Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 111 VFNKDANALLHE-------ERKFDVVDIDPF-GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred EEhhhHHHHHhh-------cCCCCEEEECCC-CCcHHHHHHHHHHhcCCCEEEEE
Confidence 999999776543 257999999975 44567888888999999999996
No 142
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=6.1e-11 Score=97.86 Aligned_cols=125 Identities=15% Similarity=0.134 Sum_probs=102.9
Q ss_pred cccccCCCCHHHHHHHHHHHHHc----CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCC
Q 029414 3 ILRAMMGTAPDAGQLMAMLLRLV----NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH 78 (194)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~l~~~~----~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~ 78 (194)
...+++++++...+.|...+... +.++++|+-||.|.+++.+|.. ..+|+++|+++++++.|+++.+.+++.
T Consensus 266 ~~~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~- 341 (432)
T COG2265 266 SPRSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGID- 341 (432)
T ss_pred CCCCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCC-
Confidence 44579999999999998777633 4579999999999999999975 459999999999999999999999998
Q ss_pred cEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCccccH-HHHHHHHhcccCCeEEEEe
Q 029414 79 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC-NYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 79 ~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~-~~~~~~~~~L~~gG~lv~~ 136 (194)
|+++..+++.++.+.+. ....+|.|++|++..... .+++.+ ..++|..++.++
T Consensus 342 N~~f~~~~ae~~~~~~~----~~~~~d~VvvDPPR~G~~~~~lk~l-~~~~p~~IvYVS 395 (432)
T COG2265 342 NVEFIAGDAEEFTPAWW----EGYKPDVVVVDPPRAGADREVLKQL-AKLKPKRIVYVS 395 (432)
T ss_pred cEEEEeCCHHHHhhhcc----ccCCCCEEEECCCCCCCCHHHHHHH-HhcCCCcEEEEe
Confidence 59999999999887752 135799999999866555 555555 566777777774
No 143
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=1.1e-10 Score=94.61 Aligned_cols=128 Identities=21% Similarity=0.257 Sum_probs=100.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414 8 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 86 (194)
Q Consensus 8 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d 86 (194)
+.+.....++...++...++.+|||..++.|.=|..+|..+.. +..|+++|.++..+...++++.+.|+. ++.+...|
T Consensus 138 ~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d 216 (355)
T COG0144 138 IYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKD 216 (355)
T ss_pred EEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEecc
Confidence 3445556666666777778899999999999999999999874 355699999999999999999999987 68888888
Q ss_pred hHHHHHHHhhcCCCCCceeEEEEeCCc-------------------------cccHHHHHHHHhcccCCeEEEEecccc
Q 029414 87 ALSVLDQLLKYSENEGSFDYAFVDADK-------------------------DNYCNYHERLMKLLKVGGIAVYDNTLW 140 (194)
Q Consensus 87 ~~~~~~~~~~~~~~~~~fD~i~id~~~-------------------------~~~~~~~~~~~~~L~~gG~lv~~~~~~ 140 (194)
+........ ..++||.|++|++. .-..++++.++++|||||.|+.+.+..
T Consensus 217 ~~~~~~~~~----~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 217 ARRLAELLP----GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred ccccccccc----ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 765433331 12369999999651 112567889999999999999988764
No 144
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.30 E-value=4e-11 Score=87.46 Aligned_cols=103 Identities=12% Similarity=-0.001 Sum_probs=79.4
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 103 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 103 (194)
..++.+|||+|||+|..+..++.. ..+++++|+++.+++.+++++.. .++++++++|+.+.... ..+
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~-------~~~ 77 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLP-------KLQ 77 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCcc-------ccC
Confidence 345679999999999999999986 46999999999999999998854 24899999999775321 246
Q ss_pred eeEEEEeCCccccHHHHHHHHhc--ccCCeEEEEeccc
Q 029414 104 FDYAFVDADKDNYCNYHERLMKL--LKVGGIAVYDNTL 139 (194)
Q Consensus 104 fD~i~id~~~~~~~~~~~~~~~~--L~~gG~lv~~~~~ 139 (194)
||.|+.+.+.......+..+.+. +.++|+++++.-.
T Consensus 78 ~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~ 115 (169)
T smart00650 78 PYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEV 115 (169)
T ss_pred CCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHHH
Confidence 99999987655445666666643 4478999886543
No 145
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.30 E-value=1.2e-11 Score=90.60 Aligned_cols=101 Identities=19% Similarity=0.306 Sum_probs=80.4
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEE-EEecchHHHHHHHhhcCCCCCcee
Q 029414 27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKIN-FIESEALSVLDQLLKYSENEGSFD 105 (194)
Q Consensus 27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~~~~~~~fD 105 (194)
...+||+|||+|.+-.+.-. .+..+|+++|+++.+-+.+.+.+++... .++. +++++.+.. +++ .+++||
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge~l-~~l-----~d~s~D 147 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGENL-PQL-----ADGSYD 147 (252)
T ss_pred ccceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechhcC-ccc-----ccCCee
Confidence 34689999999998544422 1578999999999999999999988754 4666 888887554 444 258999
Q ss_pred EEEEe---CCccccHHHHHHHHhcccCCeEEEEe
Q 029414 106 YAFVD---ADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 106 ~i~id---~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
.|++- +..++....+++..++|+|||.|++-
T Consensus 148 tVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 148 TVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred eEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 99755 44788889999999999999999984
No 146
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.29 E-value=2.5e-11 Score=91.64 Aligned_cols=104 Identities=17% Similarity=0.254 Sum_probs=86.6
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCC-----CCEEEEEeCCcchHHhHHHHHHHcCCCC--cEEEEecchHHHHHHHhhcC
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPE-----DGQITAIDVNRETYEIGLPIIKKAGVDH--KINFIESEALSVLDQLLKYS 98 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~-----~~~v~~iD~~~~~~~~a~~~~~~~~~~~--~v~~~~~d~~~~~~~~~~~~ 98 (194)
+..++||+++|+|..+..+.+..+. +++|+..|++|+++..++++..+.++-. ++.++.+|+++.. +
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp--F---- 173 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP--F---- 173 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC--C----
Confidence 4568999999999999999998863 2899999999999999999987777653 4899999997752 2
Q ss_pred CCCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEe
Q 029414 99 ENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 99 ~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
.+..||...+... ..+....+++++|.|||||.+.+-
T Consensus 174 -dd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cL 213 (296)
T KOG1540|consen 174 -DDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCL 213 (296)
T ss_pred -CCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 2578998877654 567788999999999999998863
No 147
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2e-11 Score=89.64 Aligned_cols=117 Identities=18% Similarity=0.234 Sum_probs=88.9
Q ss_pred CCHHHHHHHHHHHH--HcCCCeEEEEcccccHHHHHHHhhCCCCCE-EEEEeCCcchHHhHHHHHHHcC--------CC-
Q 029414 10 TAPDAGQLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAG--------VD- 77 (194)
Q Consensus 10 ~~~~~~~~l~~l~~--~~~~~~vLeiG~G~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~--------~~- 77 (194)
+.+..-+.+...+. +.++.+.||+|+|+|+.+..++..+...+. .++||.-++.++.+++++...- +.
T Consensus 64 SAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~ 143 (237)
T KOG1661|consen 64 SAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKR 143 (237)
T ss_pred cchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhcc
Confidence 34444444444444 667889999999999999999977754554 4999999999999999997654 11
Q ss_pred CcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 78 HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 78 ~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
.++.++.||.....++ ..+||.|++.+..+. ..+.+...|++||.|++-
T Consensus 144 ~~l~ivvGDgr~g~~e-------~a~YDaIhvGAaa~~---~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 144 GELSIVVGDGRKGYAE-------QAPYDAIHVGAAASE---LPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CceEEEeCCccccCCc-------cCCcceEEEccCccc---cHHHHHHhhccCCeEEEe
Confidence 4678899998776554 479999999875443 345677899999999984
No 148
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.27 E-value=6e-11 Score=92.30 Aligned_cols=118 Identities=19% Similarity=0.176 Sum_probs=83.4
Q ss_pred HHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhh
Q 029414 17 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK 96 (194)
Q Consensus 17 ~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 96 (194)
.+...+...++++|||||||+|+.+..++... ...|+++|.++..+-..+..-.-.+....+..+ ....+.++.
T Consensus 106 rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~G--A~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~l-plgvE~Lp~--- 179 (315)
T PF08003_consen 106 RLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRG--AKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFEL-PLGVEDLPN--- 179 (315)
T ss_pred HHHhhhCCcCCCEEEEecCCCcHHHHHHhhcC--CCEEEEECCChHHHHHHHHHHHHhCCCccEEEc-Ccchhhccc---
Confidence 33333334578999999999999999999874 357999999987665543222222332223333 233344443
Q ss_pred cCCCCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccccccc
Q 029414 97 YSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTV 144 (194)
Q Consensus 97 ~~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~ 144 (194)
.+.||.||+-+. ..++...++.+...|++||.+|++.....|..
T Consensus 180 ----~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~ 226 (315)
T PF08003_consen 180 ----LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDE 226 (315)
T ss_pred ----cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCC
Confidence 378999999887 56788899999999999999999887776643
No 149
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.27 E-value=1.1e-10 Score=88.99 Aligned_cols=98 Identities=17% Similarity=0.194 Sum_probs=74.3
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414 25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f 104 (194)
.++.+|||+|||+|..+..++.. +.+++++|+++.+++.+++++...+..+++.+..+|.. .. .++|
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~----~~------~~~f 128 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE----SL------LGRF 128 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch----hc------cCCc
Confidence 45679999999999999999875 45799999999999999999988877568999998832 21 3689
Q ss_pred eEEEEeCC-----ccccHHHHHHHHhcccCCeEEEE
Q 029414 105 DYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 105 D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
|+|++... .+.....++.+.+.+++++++.+
T Consensus 129 D~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 129 DTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred CEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 99987643 22344566666666655454443
No 150
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.27 E-value=8.7e-11 Score=77.34 Aligned_cols=99 Identities=20% Similarity=0.320 Sum_probs=78.5
Q ss_pred eEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 029414 29 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF 108 (194)
Q Consensus 29 ~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~ 108 (194)
+++|+|||.|..+..++. . ...+++++|.++...+.+++...... ..+++++.+|..+..... .++||+|+
T Consensus 1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~d~i~ 71 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPEA------DESFDVII 71 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhcccc------CCceEEEE
Confidence 489999999999999987 2 37899999999999998886444333 347899999987764311 47899999
Q ss_pred EeCCc----cccHHHHHHHHhcccCCeEEEEe
Q 029414 109 VDADK----DNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 109 id~~~----~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
++... .....+++.+.+.++|||.+++.
T Consensus 72 ~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 72 SDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred EccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 98753 24577889999999999999885
No 151
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.27 E-value=2.4e-10 Score=90.20 Aligned_cols=99 Identities=15% Similarity=0.118 Sum_probs=80.9
Q ss_pred ccccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEE
Q 029414 4 LRAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI 83 (194)
Q Consensus 4 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~ 83 (194)
+++++.+++.....+...+...++.+|||||||+|..|..++.. ..+++++|+|+++++.+++++...+..++++++
T Consensus 14 ~GQnFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii 90 (294)
T PTZ00338 14 FGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVI 90 (294)
T ss_pred CCccccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEE
Confidence 45567777777777777776667789999999999999999986 458999999999999999999877655689999
Q ss_pred ecchHHHHHHHhhcCCCCCceeEEEEeCCcc
Q 029414 84 ESEALSVLDQLLKYSENEGSFDYAFVDADKD 114 (194)
Q Consensus 84 ~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~ 114 (194)
++|+.+. . .+.||.|+.+.+..
T Consensus 91 ~~Dal~~--~-------~~~~d~VvaNlPY~ 112 (294)
T PTZ00338 91 EGDALKT--E-------FPYFDVCVANVPYQ 112 (294)
T ss_pred ECCHhhh--c-------ccccCEEEecCCcc
Confidence 9999774 1 24689999876643
No 152
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.26 E-value=2.7e-10 Score=92.29 Aligned_cols=125 Identities=11% Similarity=0.067 Sum_probs=91.7
Q ss_pred cccCCCCHHHHHHHHHHH-HHcC--CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEE
Q 029414 5 RAMMGTAPDAGQLMAMLL-RLVN--AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKIN 81 (194)
Q Consensus 5 ~~~~~~~~~~~~~l~~l~-~~~~--~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~ 81 (194)
..+++++....+.|...+ ...+ +.++||+|||+|..++.++... .+|+++|.++++++.+++++..+++. +++
T Consensus 173 ~~F~Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~-~v~ 248 (353)
T TIGR02143 173 NSFTQPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNID-NVQ 248 (353)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCC-cEE
Confidence 357778887776666443 3222 3579999999999999999874 38999999999999999999999886 799
Q ss_pred EEecchHHHHHHHhh-------cC--CCCCceeEEEEeCCccc-cHHHHHHHHhcccCCeEEEEe
Q 029414 82 FIESEALSVLDQLLK-------YS--ENEGSFDYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 82 ~~~~d~~~~~~~~~~-------~~--~~~~~fD~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~~ 136 (194)
++.+|+.+.++.... .. .....||+||+|++... ....++.+.+ |+++++++
T Consensus 249 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~---~~~ivYvs 310 (353)
T TIGR02143 249 IIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQA---YERILYIS 310 (353)
T ss_pred EEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHc---CCcEEEEE
Confidence 999999887654210 00 00124899999998544 3455555543 78888875
No 153
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=99.26 E-value=6.4e-11 Score=87.79 Aligned_cols=163 Identities=16% Similarity=0.208 Sum_probs=92.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414 10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI---PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 86 (194)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d 86 (194)
-.|.-...+..++-..+|+.|+|+|+..|.+++++|..+ ...++|+++|++....+. +.++...+.+++++++||
T Consensus 16 q~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~~i~Gd 93 (206)
T PF04989_consen 16 QYPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRITFIQGD 93 (206)
T ss_dssp S-HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-
T ss_pred cCHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceEEEECC
Confidence 345556667777777899999999999999999987544 347899999996544322 223334556799999999
Q ss_pred hHHH--HHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccCCeEEEEecccccccccCCCC--CCCCCcccchH
Q 029414 87 ALSV--LDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEE--QVPDHFRGSSR 160 (194)
Q Consensus 87 ~~~~--~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~--~~~~~~~~~~~ 160 (194)
+.+. +.+.... .......+|+.|+. ..+..+.|+...+++++|+++|+.|............ .... ..
T Consensus 94 s~d~~~~~~v~~~-~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~-----g~ 167 (206)
T PF04989_consen 94 SIDPEIVDQVREL-ASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPWGP-----GN 167 (206)
T ss_dssp SSSTHHHHTSGSS-----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS----------------
T ss_pred CCCHHHHHHHHHh-hccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccccccccccccchhh-----hh
Confidence 8652 3332111 11246779999987 5677888899999999999999998876543322110 0000 11
Q ss_pred HHHHHHHHHhhcCCCeEEEe
Q 029414 161 QAILDLNRSLADDPRVQLSH 180 (194)
Q Consensus 161 ~~~~~~~~~l~~~~~~~~~~ 180 (194)
.-..+..+++.++++|+.-.
T Consensus 168 ~p~~av~~fL~~~~~f~iD~ 187 (206)
T PF04989_consen 168 NPKTAVKEFLAEHPDFEIDT 187 (206)
T ss_dssp --HHHHHHHHHTTTTEEEET
T ss_pred HHHHHHHHHHHHCCCcEecc
Confidence 12677777888899876543
No 154
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.25 E-value=8e-11 Score=84.70 Aligned_cols=106 Identities=24% Similarity=0.393 Sum_probs=82.3
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 029414 27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 106 (194)
Q Consensus 27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~ 106 (194)
..+|||+|||.|.....|+..-- .+.++++|.++.+++.|+...++.+.++.|++.+.|..+. ++ ..++||+
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~--~~-----~~~qfdl 139 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP--DF-----LSGQFDL 139 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC--cc-----cccceeE
Confidence 44999999999999999998654 4679999999999999999999999987799999887663 22 2467887
Q ss_pred EE----Ee-----CC--ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414 107 AF----VD-----AD--KDNYCNYHERLMKLLKVGGIAVYDNTLW 140 (194)
Q Consensus 107 i~----id-----~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 140 (194)
|+ .| +. .....-++..+.++|+|||++++..+.|
T Consensus 140 vlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 140 VLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred EeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 75 12 11 2223456777889999999999976654
No 155
>PLN02672 methionine S-methyltransferase
Probab=99.25 E-value=1.5e-10 Score=103.95 Aligned_cols=125 Identities=15% Similarity=0.153 Sum_probs=93.9
Q ss_pred ccCCCCHHHHHHHHHHHHHc----CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC----
Q 029414 6 AMMGTAPDAGQLMAMLLRLV----NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD---- 77 (194)
Q Consensus 6 ~~~~~~~~~~~~l~~l~~~~----~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~---- 77 (194)
+.+...+++..++..+.... ++++|||+|||+|..++.++...+ ..+++++|+++++++.|++|...++++
T Consensus 94 ~VLIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~ 172 (1082)
T PLN02672 94 SIFIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGL 172 (1082)
T ss_pred CcccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcccccc
Confidence 34556677777777743321 246899999999999999999876 679999999999999999999876432
Q ss_pred -----------CcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCc---------------------------------
Q 029414 78 -----------HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--------------------------------- 113 (194)
Q Consensus 78 -----------~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~--------------------------------- 113 (194)
++++++++|..+..... ..+||+|+.+.+.
T Consensus 173 ~~~~~~~~~l~~rV~f~~sDl~~~~~~~------~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g 246 (1082)
T PLN02672 173 PVYDGEGKTLLDRVEFYESDLLGYCRDN------NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQG 246 (1082)
T ss_pred cccccccccccccEEEEECchhhhcccc------CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccC
Confidence 47999999987754321 2379999877540
Q ss_pred ----cc----cHHHHHHHHhcccCCeEEEEec
Q 029414 114 ----DN----YCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 114 ----~~----~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
.+ +...++.+.+.|+|||.+++.-
T Consensus 247 ~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 247 FVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred CCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 00 1345666778999999999964
No 156
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.24 E-value=2.4e-10 Score=92.88 Aligned_cols=124 Identities=15% Similarity=0.091 Sum_probs=98.2
Q ss_pred cccCCCCHHHHHHHHH-HHHHcCC---CeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcE
Q 029414 5 RAMMGTAPDAGQLMAM-LLRLVNA---KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKI 80 (194)
Q Consensus 5 ~~~~~~~~~~~~~l~~-l~~~~~~---~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v 80 (194)
+|.|..+++..-++.. +....++ .+|||..||+|..++.++...+...+|+++|+++++++.+++|++.++.. ++
T Consensus 19 NP~~~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~ 97 (374)
T TIGR00308 19 NPRMQFNRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NI 97 (374)
T ss_pred CchhhccccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cE
Confidence 4556666665544332 3333333 48999999999999999987532468999999999999999999988876 78
Q ss_pred EEEecchHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 81 NFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 81 ~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
+++++|+...+... ..+||+|++|+ ......+++.+.+.+++||+|.+.
T Consensus 98 ~v~~~Da~~~l~~~------~~~fDvIdlDP-fGs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 98 EVPNEDAANVLRYR------NRKFHVIDIDP-FGTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred EEEchhHHHHHHHh------CCCCCEEEeCC-CCCcHHHHHHHHHhcccCCEEEEE
Confidence 99999998887654 36799999998 455568999999999999999986
No 157
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.24 E-value=6.8e-11 Score=88.02 Aligned_cols=114 Identities=20% Similarity=0.236 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHH
Q 029414 12 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 91 (194)
Q Consensus 12 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 91 (194)
+...+-.+......++..|+|..||.|.+++.+|...+ ..+|+++|++|.+++..+++++.+++.+++.++.+|+.++.
T Consensus 87 rl~~Er~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~ 165 (200)
T PF02475_consen 87 RLSTERRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL 165 (200)
T ss_dssp GGHHHHHHHHTC--TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG--
T ss_pred ccHHHHHHHHhcCCcceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc
Confidence 33333334333345788999999999999999998544 67999999999999999999999999989999999998876
Q ss_pred HHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414 92 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 92 ~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
+. ..||-|+++-+. ....+++.+..++++||++.+
T Consensus 166 ~~--------~~~drvim~lp~-~~~~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 166 PE--------GKFDRVIMNLPE-SSLEFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp -T--------T-EEEEEE--TS-SGGGGHHHHHHHEEEEEEEEE
T ss_pred Cc--------cccCEEEECChH-HHHHHHHHHHHHhcCCcEEEC
Confidence 52 789999997653 444788999999999998753
No 158
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.23 E-value=2.7e-11 Score=94.39 Aligned_cols=105 Identities=23% Similarity=0.301 Sum_probs=75.1
Q ss_pred CCCeEEEEcccccHH----HHHHHhhCCC----CCEEEEEeCCcchHHhHHHHHH----HcCC-----------------
Q 029414 26 NAKKTIEIGVFTGYS----LLLTALTIPE----DGQITAIDVNRETYEIGLPIIK----KAGV----------------- 76 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~----~~~la~~~~~----~~~v~~iD~~~~~~~~a~~~~~----~~~~----------------- 76 (194)
++.+|+++|||+|.- +..+++..+. +.+|+++|+|+.+++.|++.+- ..++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 456999999999974 3344444432 4689999999999999997531 0111
Q ss_pred -----CCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEec
Q 029414 77 -----DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 77 -----~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
..++++.++|..+.... .++||+|++... .+....+++.+.+.|+|||++++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~-------~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPP-------LGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCc-------cCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 13577888887653221 378999998643 2345678999999999999999953
No 159
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.23 E-value=7.8e-11 Score=87.37 Aligned_cols=100 Identities=15% Similarity=0.201 Sum_probs=71.8
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcCCCC
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENE 101 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~ 101 (194)
..++.+|||+|||+|..+..++....+.++++++|+++.. .. ++++++.+|..+. ...+... ...
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~-~~~ 96 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRER-VGD 96 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHH-hCC
Confidence 3567899999999999999998887546799999999854 12 2677887776442 1111100 013
Q ss_pred CceeEEEEeCCc-------c-------ccHHHHHHHHhcccCCeEEEEe
Q 029414 102 GSFDYAFVDADK-------D-------NYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 102 ~~fD~i~id~~~-------~-------~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
++||+|++++.. . .....++.+.+.|+|||.+++.
T Consensus 97 ~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 97 DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 579999997531 0 1256788999999999999995
No 160
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=3.4e-10 Score=86.28 Aligned_cols=112 Identities=14% Similarity=0.164 Sum_probs=90.9
Q ss_pred HHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhh
Q 029414 17 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK 96 (194)
Q Consensus 17 ~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 96 (194)
++-+.+...++.+|||-|+|+|..+.++++.+++.++++.+|......+.|.+.|+..++++++++.+.|....-...
T Consensus 96 ~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~-- 173 (314)
T KOG2915|consen 96 MILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI-- 173 (314)
T ss_pred HHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc--
Confidence 334445577889999999999999999999998899999999999999999999999999999999999987632221
Q ss_pred cCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414 97 YSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 97 ~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
....+|.||+|-+ .+..++..+++.||.+|.-++
T Consensus 174 ---ks~~aDaVFLDlP--aPw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 174 ---KSLKADAVFLDLP--APWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred ---cccccceEEEcCC--ChhhhhhhhHHHhhhcCceEE
Confidence 1468999999964 333556667778888875444
No 161
>PHA03412 putative methyltransferase; Provisional
Probab=99.22 E-value=2.6e-10 Score=86.29 Aligned_cols=118 Identities=14% Similarity=0.232 Sum_probs=82.9
Q ss_pred cccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEE
Q 029414 5 RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNRETYEIGLPIIKKAGVDHKINF 82 (194)
Q Consensus 5 ~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~ 82 (194)
+.+++.......+. .......+|||+|||+|..++.++..+. +..+|+++|+++.+++.|++++. ++.+
T Consensus 31 GqFfTP~~iAr~~~---i~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~ 101 (241)
T PHA03412 31 GAFFTPIGLARDFT---IDACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATW 101 (241)
T ss_pred CccCCCHHHHHHHH---HhccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEE
Confidence 45666665444332 1223467999999999999999988653 25699999999999999997752 5788
Q ss_pred EecchHHHHHHHhhcCCCCCceeEEEEeCCc-----cc----------cHHHHHHHHhcccCCeEEEEeccc
Q 029414 83 IESEALSVLDQLLKYSENEGSFDYAFVDADK-----DN----------YCNYHERLMKLLKVGGIAVYDNTL 139 (194)
Q Consensus 83 ~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~-----~~----------~~~~~~~~~~~L~~gG~lv~~~~~ 139 (194)
+.+|..... + .++||+|+.+++. .+ ...+++.+.+++++|+.|+=...+
T Consensus 102 ~~~D~~~~~--~------~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~ 165 (241)
T PHA03412 102 INADALTTE--F------DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMSA 165 (241)
T ss_pred EEcchhccc--c------cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcccc
Confidence 888886531 1 3689999998761 11 245678888888887775444433
No 162
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.21 E-value=2.5e-10 Score=83.55 Aligned_cols=108 Identities=22% Similarity=0.272 Sum_probs=71.9
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC--CCCcEEEEecchHHHH-HHHhhcCCC
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--VDHKINFIESEALSVL-DQLLKYSEN 100 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~-~~~~~~~~~ 100 (194)
..++++|||+|||+|..++.++...+ ..+|+..|.++ .++..+.+++.++ ...++.+..-+..+.. .... .
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~-~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~----~ 116 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFG-AARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL----E 116 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH----S
T ss_pred hcCCceEEEECCccchhHHHHHhccC-CceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc----c
Confidence 45789999999999999999998754 67999999998 9999999999876 4457777766543322 2221 1
Q ss_pred CCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEec
Q 029414 101 EGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 101 ~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
..+||+|+..-. .+....+++.+.++++++|.+++..
T Consensus 117 ~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 117 PHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp -SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred cccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 368999986432 5667788888999999998876653
No 163
>PRK05785 hypothetical protein; Provisional
Probab=99.21 E-value=1.6e-10 Score=88.06 Aligned_cols=88 Identities=13% Similarity=0.100 Sum_probs=69.5
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 105 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD 105 (194)
++.+|||+|||+|..+..++... +.+++++|+++++++.+++.. ..+++|+.+. +- .+++||
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~---------~~~~~d~~~l-p~------~d~sfD 112 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD---------DKVVGSFEAL-PF------RDKSFD 112 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc---------ceEEechhhC-CC------CCCCEE
Confidence 47899999999999999998864 469999999999999988641 2456777553 21 257899
Q ss_pred EEEEeCC---ccccHHHHHHHHhcccCCe
Q 029414 106 YAFVDAD---KDNYCNYHERLMKLLKVGG 131 (194)
Q Consensus 106 ~i~id~~---~~~~~~~~~~~~~~L~~gG 131 (194)
+|++... ..+....++++.+.|||..
T Consensus 113 ~v~~~~~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 113 VVMSSFALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred EEEecChhhccCCHHHHHHHHHHHhcCce
Confidence 9998754 4567789999999999953
No 164
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.19 E-value=3.5e-10 Score=80.27 Aligned_cols=122 Identities=18% Similarity=0.123 Sum_probs=98.1
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414 6 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 85 (194)
Q Consensus 6 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 85 (194)
+..-+++..++.|...+.-..+.-|||+|.|+|..|..+....-+...++++|.+++......+.+ +.++++.|
T Consensus 28 aI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~g 101 (194)
T COG3963 28 AILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIING 101 (194)
T ss_pred eecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCcccccc
Confidence 455678888888888888888889999999999999998877665789999999999999888776 25679999
Q ss_pred chHHHHHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEE
Q 029414 86 EALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 86 d~~~~~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
|+.+.-..+..+ ....||.|++.-+ .....+.++.+...|++||.++-
T Consensus 102 da~~l~~~l~e~--~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 102 DAFDLRTTLGEH--KGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred chhhHHHHHhhc--CCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 998764333222 2457999998754 34567889999999999999886
No 165
>PRK06202 hypothetical protein; Provisional
Probab=99.19 E-value=8.5e-11 Score=89.99 Aligned_cols=104 Identities=13% Similarity=0.074 Sum_probs=73.1
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCC---CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCC
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIP---EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 100 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 100 (194)
..++.+|||+|||+|..+..++...+ ++.+++++|+++++++.++++.... ++++...++... +. .
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l-~~------~ 126 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDEL-VA------E 126 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccc-cc------c
Confidence 34667999999999999998886432 2469999999999999998876433 345555544332 11 1
Q ss_pred CCceeEEEEeCCc---c--ccHHHHHHHHhcccCCeEEEEecccc
Q 029414 101 EGSFDYAFVDADK---D--NYCNYHERLMKLLKVGGIAVYDNTLW 140 (194)
Q Consensus 101 ~~~fD~i~id~~~---~--~~~~~~~~~~~~L~~gG~lv~~~~~~ 140 (194)
.++||+|++.... . ....+++.+.+.++ |.+++.+...
T Consensus 127 ~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~ 169 (232)
T PRK06202 127 GERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIR 169 (232)
T ss_pred CCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEecccc
Confidence 4689999987541 1 23468888988887 5666666544
No 166
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=99.19 E-value=1.9e-09 Score=84.80 Aligned_cols=153 Identities=22% Similarity=0.262 Sum_probs=113.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414 9 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 88 (194)
Q Consensus 9 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 88 (194)
.+......+...++...++.+|||..++.|.=|..+|..+...+.+++.|+++..+...++++.+.|.. ++.+...|+.
T Consensus 68 ~vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~ 146 (283)
T PF01189_consen 68 YVQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADAR 146 (283)
T ss_dssp EEHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHH
T ss_pred EecccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeeccc
Confidence 344444555555666667789999999999999999999987899999999999999999999999986 7888888887
Q ss_pred HHHHHHhhcCCCCCceeEEEEeCCc-------------------------cccHHHHHHHHhcc----cCCeEEEEeccc
Q 029414 89 SVLDQLLKYSENEGSFDYAFVDADK-------------------------DNYCNYHERLMKLL----KVGGIAVYDNTL 139 (194)
Q Consensus 89 ~~~~~~~~~~~~~~~fD~i~id~~~-------------------------~~~~~~~~~~~~~L----~~gG~lv~~~~~ 139 (194)
...+... ...||.|++|++. .-....++.+++.+ +|||.+|...+.
T Consensus 147 ~~~~~~~-----~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 147 KLDPKKP-----ESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp HHHHHHH-----TTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred ccccccc-----ccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 7755442 2469999999751 01246688899999 999999998765
Q ss_pred ccccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEEEeeecC
Q 029414 140 WGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG 184 (194)
Q Consensus 140 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~ 184 (194)
..-. + -...++.| +.++|+++..-++..
T Consensus 222 ~~~e------E--------NE~vV~~f---l~~~~~~~l~~~~~~ 249 (283)
T PF01189_consen 222 LSPE------E--------NEEVVEKF---LKRHPDFELVPIPLP 249 (283)
T ss_dssp HHGG------G--------THHHHHHH---HHHSTSEEEECCESS
T ss_pred HHHH------H--------HHHHHHHH---HHhCCCcEEEecccc
Confidence 4221 1 11224555 445777776655443
No 167
>PHA03411 putative methyltransferase; Provisional
Probab=99.17 E-value=7e-10 Score=85.83 Aligned_cols=96 Identities=14% Similarity=0.177 Sum_probs=74.0
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 105 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD 105 (194)
...+|||+|||+|..++.++...+ ..+++++|+++.+++.+++++ ++++++.+|..+... ..+||
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~--------~~kFD 128 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES--------NEKFD 128 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc--------cCCCc
Confidence 457999999999999998888654 579999999999999998863 268899999876532 36799
Q ss_pred EEEEeCCc-----c---c---------------cHHHHHHHHhcccCCeEEEEe
Q 029414 106 YAFVDADK-----D---N---------------YCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 106 ~i~id~~~-----~---~---------------~~~~~~~~~~~L~~gG~lv~~ 136 (194)
+|+++.+. . . ..++++....+|+|+|.+.+.
T Consensus 129 lIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 129 VVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred EEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 99998651 0 0 134556667889999977664
No 168
>PRK00536 speE spermidine synthase; Provisional
Probab=99.16 E-value=8.7e-10 Score=85.25 Aligned_cols=99 Identities=8% Similarity=0.059 Sum_probs=79.2
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC--C-CCcEEEEecchHHHHHHHhhcCCC
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSEN 100 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~~~~~~~~~~ 100 (194)
..+|++||-||.|-|..+..++++ + .+|+.+|+|++.++.+|+.+.... + +++++++.. . .+. .
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh-~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~-~~~-----~ 136 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY-D--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----L-LDL-----D 136 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc-C--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----h-hhc-----c
Confidence 457899999999999999999997 2 399999999999999999775432 2 368888751 1 111 1
Q ss_pred CCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414 101 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
.++||+|++|.. ....+++.+.+.|+|||+++.+.
T Consensus 137 ~~~fDVIIvDs~--~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 137 IKKYDLIICLQE--PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CCcCCEEEEcCC--CChHHHHHHHHhcCCCcEEEECC
Confidence 368999999964 44688899999999999999964
No 169
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.15 E-value=1.1e-10 Score=83.89 Aligned_cols=78 Identities=23% Similarity=0.303 Sum_probs=59.5
Q ss_pred CeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 029414 28 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 107 (194)
Q Consensus 28 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i 107 (194)
..|+|+.||.|..++.||+... +|+++|+++..++.++.|.+-.|+.++++++++|+.+.+..+.. ...+|+|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~----~~~~D~v 73 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKS----NKIFDVV 73 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB----------SEE
T ss_pred CEEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccc----cccccEE
Confidence 3699999999999999999854 99999999999999999999999988999999999997665421 1228999
Q ss_pred EEeCC
Q 029414 108 FVDAD 112 (194)
Q Consensus 108 ~id~~ 112 (194)
|++++
T Consensus 74 FlSPP 78 (163)
T PF09445_consen 74 FLSPP 78 (163)
T ss_dssp EE---
T ss_pred EECCC
Confidence 99965
No 170
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.13 E-value=4.2e-09 Score=83.83 Aligned_cols=83 Identities=13% Similarity=0.252 Sum_probs=65.8
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc-CCCCcEEEEe-cchHHHHHHHhhcCCCCCc
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFIE-SEALSVLDQLLKYSENEGS 103 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~v~~~~-~d~~~~~~~~~~~~~~~~~ 103 (194)
+..++||||||+|.....++...+ +.+++++|+++.+++.|+++++.+ ++.+++++.. .+....+..+.. ..+.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~---~~~~ 189 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIH---KNER 189 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccc---cCCc
Confidence 347899999999988888887765 789999999999999999999999 7888898864 444444333211 1468
Q ss_pred eeEEEEeCC
Q 029414 104 FDYAFVDAD 112 (194)
Q Consensus 104 fD~i~id~~ 112 (194)
||+|+++++
T Consensus 190 fDlivcNPP 198 (321)
T PRK11727 190 FDATLCNPP 198 (321)
T ss_pred eEEEEeCCC
Confidence 999999976
No 171
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.13 E-value=5.7e-10 Score=83.38 Aligned_cols=104 Identities=15% Similarity=0.232 Sum_probs=82.8
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCC-EEEEEeCCcchHHhHHHHHHHcCC-CCcEEEEecchHHHHHHHhhcCCCCC
Q 029414 25 VNAKKTIEIGVFTGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGV-DHKINFIESEALSVLDQLLKYSENEG 102 (194)
Q Consensus 25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~~~ 102 (194)
.++.+|||.++|-|+.++.-++. ++ +|+++|.+|..++.|+-|-=..++ ..+++++.||+.+..+.+ .++
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~r---GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~-----~D~ 204 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALER---GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDF-----DDE 204 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHc---CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcC-----Ccc
Confidence 35789999999999999998875 44 999999999999887654311121 236899999999998887 367
Q ss_pred ceeEEEEeCCc------cccHHHHHHHHhcccCCeEEEEe
Q 029414 103 SFDYAFVDADK------DNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 103 ~fD~i~id~~~------~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
+||+|+-|++. -....+++++.+.|+|||.++-.
T Consensus 205 sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHY 244 (287)
T COG2521 205 SFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHY 244 (287)
T ss_pred ccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEE
Confidence 89999999872 23467889999999999998753
No 172
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.12 E-value=2.6e-10 Score=84.93 Aligned_cols=112 Identities=14% Similarity=0.161 Sum_probs=77.7
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 105 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD 105 (194)
...++||+|+|.|..|..++... -.+|..+|+.+..++.|++.+.... ....++++.-..++.|. ..+||
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~-------~~~YD 124 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPE-------EGKYD 124 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG-----------TT-EE
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCC-------CCcEe
Confidence 45789999999999999876554 3599999999999999998775421 22356777666666554 47899
Q ss_pred EEEEeCC-----ccccHHHHHHHHhcccCCeEEEE-eccccccc-ccCC
Q 029414 106 YAFVDAD-----KDNYCNYHERLMKLLKVGGIAVY-DNTLWGGT-VAVP 147 (194)
Q Consensus 106 ~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~-~~~~~~g~-~~~~ 147 (194)
+|++... ..+..++|+.|...|+|||+|++ +|+...+. +.++
T Consensus 125 lIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~ 173 (218)
T PF05891_consen 125 LIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDE 173 (218)
T ss_dssp EEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEET
T ss_pred EEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCC
Confidence 9999865 35678899999999999999999 44554443 4444
No 173
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.11 E-value=1.1e-09 Score=87.41 Aligned_cols=117 Identities=20% Similarity=0.167 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHH
Q 029414 14 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ 93 (194)
Q Consensus 14 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 93 (194)
..+-.+..-....+.+|+|..+|.|.+++.+|.... .+|+++|++|.+++..++|+..+++.+.+..+.||+.+..+.
T Consensus 176 ~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~ 253 (341)
T COG2520 176 STERARVAELVKEGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPE 253 (341)
T ss_pred hHHHHHHHhhhcCCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhc
Confidence 334444444455689999999999999999999754 349999999999999999999999987799999999998776
Q ss_pred HhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecccc
Q 029414 94 LLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW 140 (194)
Q Consensus 94 ~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 140 (194)
+ +.+|-|++..+. ....++..+...+++||+|.++....
T Consensus 254 ~-------~~aDrIim~~p~-~a~~fl~~A~~~~k~~g~iHyy~~~~ 292 (341)
T COG2520 254 L-------GVADRIIMGLPK-SAHEFLPLALELLKDGGIIHYYEFVP 292 (341)
T ss_pred c-------ccCCEEEeCCCC-cchhhHHHHHHHhhcCcEEEEEeccc
Confidence 4 789999997643 55678889999999999999987653
No 174
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.11 E-value=2.4e-09 Score=83.85 Aligned_cols=106 Identities=14% Similarity=0.033 Sum_probs=77.4
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414 6 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 85 (194)
Q Consensus 6 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 85 (194)
..+.+++.....+...+...++.+|||+|||+|..+..++... .+++++|+++++++.+++++.. ++++++++
T Consensus 22 q~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~ 94 (272)
T PRK00274 22 QNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE----DNLTIIEG 94 (272)
T ss_pred cCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc----CceEEEEC
Confidence 4456666666666666666677899999999999999999874 3999999999999999987742 48999999
Q ss_pred chHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHh
Q 029414 86 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK 125 (194)
Q Consensus 86 d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~ 125 (194)
|+.+.... .-.+|.|+.+.+.......+..+..
T Consensus 95 D~~~~~~~-------~~~~~~vv~NlPY~iss~ii~~~l~ 127 (272)
T PRK00274 95 DALKVDLS-------ELQPLKVVANLPYNITTPLLFHLLE 127 (272)
T ss_pred hhhcCCHH-------HcCcceEEEeCCccchHHHHHHHHh
Confidence 98775211 0115788877654444555555543
No 175
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.10 E-value=2.2e-09 Score=83.46 Aligned_cols=95 Identities=16% Similarity=0.050 Sum_probs=78.1
Q ss_pred ccccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEE
Q 029414 4 LRAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI 83 (194)
Q Consensus 4 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~ 83 (194)
+++.+.+++.....+...+...++.+|||+|||+|..+..++.. ..+++++|+++.+++.+++++.. .++++++
T Consensus 7 ~GQnfl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii 80 (258)
T PRK14896 7 LGQHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA---AGNVEII 80 (258)
T ss_pred CCccccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc---CCCEEEE
Confidence 46677888888888888777777889999999999999999987 35899999999999999988854 2489999
Q ss_pred ecchHHHHHHHhhcCCCCCceeEEEEeCCc
Q 029414 84 ESEALSVLDQLLKYSENEGSFDYAFVDADK 113 (194)
Q Consensus 84 ~~d~~~~~~~~~~~~~~~~~fD~i~id~~~ 113 (194)
++|+.+.. ...||.|+.+.+.
T Consensus 81 ~~D~~~~~---------~~~~d~Vv~NlPy 101 (258)
T PRK14896 81 EGDALKVD---------LPEFNKVVSNLPY 101 (258)
T ss_pred EeccccCC---------chhceEEEEcCCc
Confidence 99987641 1458999887653
No 176
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.10 E-value=2e-09 Score=81.58 Aligned_cols=124 Identities=8% Similarity=0.003 Sum_probs=86.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHH------------HcCC
Q 029414 9 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK------------KAGV 76 (194)
Q Consensus 9 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~------------~~~~ 76 (194)
.+++...+.+..+. ..++.+||..|||.|....+||.. +.+|+++|+++.+++.+.+... ...
T Consensus 27 ~pnp~L~~~~~~l~-~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~- 101 (226)
T PRK13256 27 SPNEFLVKHFSKLN-INDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYK- 101 (226)
T ss_pred CCCHHHHHHHHhcC-CCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceec-
Confidence 34444444443332 224579999999999999999986 6789999999999988755210 011
Q ss_pred CCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEeccccc
Q 029414 77 DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLWG 141 (194)
Q Consensus 77 ~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~ 141 (194)
..+++++++|..+.-+.- ...++||+|+-.+. ......+.+.+.++|+|||.++.-.....
T Consensus 102 ~~~i~~~~gD~f~l~~~~----~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~ 167 (226)
T PRK13256 102 GDDIEIYVADIFNLPKIA----NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHD 167 (226)
T ss_pred cCceEEEEccCcCCCccc----cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecC
Confidence 237899999998752210 01367999875432 45677888999999999999888654433
No 177
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.10 E-value=4.4e-10 Score=84.37 Aligned_cols=108 Identities=21% Similarity=0.336 Sum_probs=78.6
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC------------------------------
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG------------------------------ 75 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~------------------------------ 75 (194)
.++.+|||||.+|..|+.+|+.+. ...+.|+|+++..+..|+++++..-
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 578999999999999999999987 6789999999999999999885321
Q ss_pred ----CCCcEEEEec----chHHHHHHHhhcCCCCCceeEEEEeCC---------ccccHHHHHHHHhcccCCeEEEEecc
Q 029414 76 ----VDHKINFIES----EALSVLDQLLKYSENEGSFDYAFVDAD---------KDNYCNYHERLMKLLKVGGIAVYDNT 138 (194)
Q Consensus 76 ----~~~~v~~~~~----d~~~~~~~~~~~~~~~~~fD~i~id~~---------~~~~~~~~~~~~~~L~~gG~lv~~~~ 138 (194)
.++++.+... +..+++.. ..+.||+|+|-.. ......+|..++++|.|||++|+.--
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~------~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQ 210 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDM------IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQ 210 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhh------ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCC
Confidence 0111111111 11222211 2478999986532 45568899999999999999999754
Q ss_pred cc
Q 029414 139 LW 140 (194)
Q Consensus 139 ~~ 140 (194)
-|
T Consensus 211 pW 212 (288)
T KOG2899|consen 211 PW 212 (288)
T ss_pred ch
Confidence 44
No 178
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.08 E-value=3.7e-09 Score=84.20 Aligned_cols=96 Identities=17% Similarity=0.088 Sum_probs=69.1
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCC----CCcEEEEecchHHHHHHHhhcCCCC
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV----DHKINFIESEALSVLDQLLKYSENE 101 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~~ 101 (194)
++.+|||+|||+|..+..++.. +.+|+++|+++.+++.+++++..... ..++++..+|..+. .
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----------~ 210 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----------S 210 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----------C
Confidence 4679999999999999999985 56999999999999999999876521 13578888886432 3
Q ss_pred CceeEEEEeCCc-----cccHHHHHHHHhcccCCeEEEE
Q 029414 102 GSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 102 ~~fD~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
++||+|++.... ......++.+. .+.++|+++.
T Consensus 211 ~~fD~Vv~~~vL~H~p~~~~~~ll~~l~-~l~~g~liIs 248 (315)
T PLN02585 211 GKYDTVTCLDVLIHYPQDKADGMIAHLA-SLAEKRLIIS 248 (315)
T ss_pred CCcCEEEEcCEEEecCHHHHHHHHHHHH-hhcCCEEEEE
Confidence 689999865331 11223445554 3456666664
No 179
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.07 E-value=1.3e-09 Score=80.10 Aligned_cols=120 Identities=19% Similarity=0.198 Sum_probs=88.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCE---------EEEEeCCcchHHhHHHHHHHcCCCCc
Q 029414 9 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------ITAIDVNRETYEIGLPIIKKAGVDHK 79 (194)
Q Consensus 9 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~---------v~~iD~~~~~~~~a~~~~~~~~~~~~ 79 (194)
+..+..+..|-.++...++..+||--||+|...++.|.... +.. +++.|+++++++.+++|+...++...
T Consensus 11 ~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~-~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~ 89 (179)
T PF01170_consen 11 PLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGA-NIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDY 89 (179)
T ss_dssp SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHT-TTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGG
T ss_pred CCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhh-CcccccccccccEEecCCCHHHHHHHHHHHHhcccCCc
Confidence 56677788888888877888999999999999988776654 333 99999999999999999999999888
Q ss_pred EEEEecchHHHHHHHhhcCCCCCceeEEEEeCCc-----------cccHHHHHHHHhcccCCeEEEEe
Q 029414 80 INFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----------DNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 80 v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~-----------~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
+.+.+.|+.+.. . ..+.+|.|+.|.+. .-|..+++.+.+.+++..++++.
T Consensus 90 i~~~~~D~~~l~-~------~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 90 IDFIQWDARELP-L------PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp EEEEE--GGGGG-G------TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred eEEEecchhhcc-c------ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 999999987764 1 14789999999761 22456677888889986666654
No 180
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=99.07 E-value=1.7e-09 Score=79.62 Aligned_cols=97 Identities=23% Similarity=0.278 Sum_probs=82.1
Q ss_pred eEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 029414 29 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF 108 (194)
Q Consensus 29 ~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~ 108 (194)
+++|+|+|.|.-++.+|-..| +.+++.+|.........+......+++ |++++++++++ .. ..+.||+|.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~--~~------~~~~fd~v~ 120 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE--PE------YRESFDVVT 120 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH--TT------TTT-EEEEE
T ss_pred eEEecCCCCCChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc--cc------cCCCccEEE
Confidence 799999999999999999987 899999999999999999999999997 89999999988 22 157899999
Q ss_pred EeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 109 VDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 109 id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
..+.. ....+++.+.+++++||.+++-
T Consensus 121 aRAv~-~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 121 ARAVA-PLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp EESSS-SHHHHHHHHGGGEEEEEEEEEE
T ss_pred eehhc-CHHHHHHHHHHhcCCCCEEEEE
Confidence 98753 5567889999999999999983
No 181
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.07 E-value=2e-09 Score=81.47 Aligned_cols=120 Identities=18% Similarity=0.236 Sum_probs=84.3
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHH-cC---------
Q 029414 6 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK-AG--------- 75 (194)
Q Consensus 6 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~~--------- 75 (194)
..-.+++...+++.. ....++.+||..|||.|....+||.. +.+|+++|+++.+++.+.+.-.. ..
T Consensus 18 ~~~~~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~ 93 (218)
T PF05724_consen 18 DQGEPNPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKR 93 (218)
T ss_dssp --TTSTHHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEE
T ss_pred CCCCCCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceee
Confidence 344566666666666 33456679999999999999999985 67999999999999887432211 00
Q ss_pred -CCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeC-----CccccHHHHHHHHhcccCCeEEEE
Q 029414 76 -VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 76 -~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
-..+++++++|..+.-+.. .++||+|+=.. +.....++.+.+.++|+|||.+++
T Consensus 94 ~~~~~i~~~~gDfF~l~~~~------~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 94 YQAGRITIYCGDFFELPPED------VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp ETTSSEEEEES-TTTGGGSC------HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred ecCCceEEEEcccccCChhh------cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 0236899999998853331 25799997432 256678889999999999999444
No 182
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=6.5e-10 Score=77.15 Aligned_cols=115 Identities=17% Similarity=0.269 Sum_probs=86.4
Q ss_pred cccccCCCCHHHHHHHHHHHHHc---CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCc
Q 029414 3 ILRAMMGTAPDAGQLMAMLLRLV---NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK 79 (194)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~l~~~~---~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~ 79 (194)
.+.++++.....+.+++.+-... .++.++|+|||+|..+..++ +++...++++|++|++++.+++|.+.+.+ +
T Consensus 22 ~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~s--m~~~e~vlGfDIdpeALEIf~rNaeEfEv--q 97 (185)
T KOG3420|consen 22 LLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFS--MPKNESVLGFDIDPEALEIFTRNAEEFEV--Q 97 (185)
T ss_pred hhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhh--cCCCceEEeeecCHHHHHHHhhchHHhhh--h
Confidence 35567777777777777776654 47899999999999884444 44578899999999999999999999887 4
Q ss_pred EEEEecchHHHHHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhccc
Q 029414 80 INFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLK 128 (194)
Q Consensus 80 v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~ 128 (194)
+.+.++|..+.... .+.||.++++.+ .....+++..++++.+
T Consensus 98 idlLqcdildle~~-------~g~fDtaviNppFGTk~~~aDm~fv~~al~~~~ 144 (185)
T KOG3420|consen 98 IDLLQCDILDLELK-------GGIFDTAVINPPFGTKKKGADMEFVSAALKVAS 144 (185)
T ss_pred hheeeeeccchhcc-------CCeEeeEEecCCCCcccccccHHHHHHHHHHHH
Confidence 68888888775444 478999999976 2233455555555544
No 183
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=99.06 E-value=5.1e-09 Score=78.51 Aligned_cols=98 Identities=21% Similarity=0.298 Sum_probs=84.5
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc-ee
Q 029414 27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS-FD 105 (194)
Q Consensus 27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~-fD 105 (194)
+++++|||+|.|.-++.+|-..| +.+++.+|.........+....+.+++ |++++++.+++...+ .. ||
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p-~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~--------~~~~D 137 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFP-DLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQE--------KKQYD 137 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhcc-CCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccc--------cccCc
Confidence 58999999999999999997776 778999999999999999999999987 899999999887443 23 99
Q ss_pred EEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414 106 YAFVDADKDNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 106 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
+|.+.+ ........+.+.+++++||.+++
T Consensus 138 ~vtsRA-va~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 138 VVTSRA-VASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred EEEeeh-ccchHHHHHHHHHhcccCCcchh
Confidence 999876 44566778889999999998876
No 184
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=3.6e-08 Score=71.13 Aligned_cols=103 Identities=21% Similarity=0.232 Sum_probs=80.6
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 105 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD 105 (194)
.++.++|||||+|..+.+++....+...+.++|++|++.+..++-...++. ++..++.|....+. .++.|
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~--------~~~VD 112 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLR--------NESVD 112 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhc--------cCCcc
Confidence 478999999999999999999988788999999999999999998887775 57888888766554 37899
Q ss_pred EEEEeCC------c--------------cc----cHHHHHHHHhcccCCeEEEEecc
Q 029414 106 YAFVDAD------K--------------DN----YCNYHERLMKLLKVGGIAVYDNT 138 (194)
Q Consensus 106 ~i~id~~------~--------------~~----~~~~~~~~~~~L~~gG~lv~~~~ 138 (194)
+++.+.+ . .+ ...++..+-.+|.|.|++.....
T Consensus 113 vLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 113 VLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred EEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 9987754 0 11 22344455567889999888543
No 185
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.03 E-value=1.1e-08 Score=86.52 Aligned_cols=104 Identities=18% Similarity=0.150 Sum_probs=84.8
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 105 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD 105 (194)
....+||||||.|.++..+|...| +..++++|+....+..+.+.....++. |+.++.+|+..+...+. .+++|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p-~~~~iGiE~~~~~~~~~~~~~~~~~l~-N~~~~~~~~~~~~~~~~-----~~sv~ 419 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDLILNDLP-----NNSLD 419 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHhcC-----ccccc
Confidence 456899999999999999999987 899999999999999888888888876 89998888755444432 36789
Q ss_pred EEEEeCC---c--------cccHHHHHHHHhcccCCeEEEEe
Q 029414 106 YAFVDAD---K--------DNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 106 ~i~id~~---~--------~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
.|++..+ + --...+++.+.+.|+|||.|.+.
T Consensus 420 ~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 420 GIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred EEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 8887643 1 12468899999999999999884
No 186
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.03 E-value=7.3e-09 Score=80.35 Aligned_cols=107 Identities=17% Similarity=0.107 Sum_probs=79.3
Q ss_pred ccccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEE
Q 029414 4 LRAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI 83 (194)
Q Consensus 4 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~ 83 (194)
++.++.+++...+.+...+...++.+|||+|||+|..+..++...+ +++++|+++.+++.+++++.. .++++++
T Consensus 7 ~gq~fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~---~~~v~v~ 80 (253)
T TIGR00755 7 LGQNFLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL---YERLEVI 80 (253)
T ss_pred CCCccCCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc---CCcEEEE
Confidence 4566777777777777766666788999999999999999998754 699999999999999987743 3489999
Q ss_pred ecchHHHHHHHhhcCCCCCcee---EEEEeCCccccHHHHHHHHh
Q 029414 84 ESEALSVLDQLLKYSENEGSFD---YAFVDADKDNYCNYHERLMK 125 (194)
Q Consensus 84 ~~d~~~~~~~~~~~~~~~~~fD---~i~id~~~~~~~~~~~~~~~ 125 (194)
.+|+.+... ..+| +|+.+.+.......+..+..
T Consensus 81 ~~D~~~~~~---------~~~d~~~~vvsNlPy~i~~~il~~ll~ 116 (253)
T TIGR00755 81 EGDALKVDL---------PDFPKQLKVVSNLPYNISSPLIFKLLE 116 (253)
T ss_pred ECchhcCCh---------hHcCCcceEEEcCChhhHHHHHHHHhc
Confidence 999876421 1344 67666554444455555543
No 187
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=8.9e-09 Score=79.19 Aligned_cols=108 Identities=14% Similarity=0.077 Sum_probs=83.6
Q ss_pred ccccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEE
Q 029414 4 LRAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI 83 (194)
Q Consensus 4 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~ 83 (194)
+++++..+.....-+...+...++.+|||||+|.|..|..+++.. .+|+++|+|+..++..++.+. ..+|++++
T Consensus 8 ~GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi 81 (259)
T COG0030 8 LGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA---PYDNLTVI 81 (259)
T ss_pred cccccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc---cccceEEE
Confidence 456777788777777777767677899999999999999999974 489999999999999998876 23599999
Q ss_pred ecchHHH-HHHHhhcCCCCCceeEEEEeCCccccHHHHHHHH
Q 029414 84 ESEALSV-LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 124 (194)
Q Consensus 84 ~~d~~~~-~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~ 124 (194)
++|+... ++.+ ..++.|+.+-+..-....+..+.
T Consensus 82 ~~DaLk~d~~~l-------~~~~~vVaNlPY~Isspii~kll 116 (259)
T COG0030 82 NGDALKFDFPSL-------AQPYKVVANLPYNISSPILFKLL 116 (259)
T ss_pred eCchhcCcchhh-------cCCCEEEEcCCCcccHHHHHHHH
Confidence 9999885 2322 16788988876544445544443
No 188
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.02 E-value=7.2e-10 Score=82.63 Aligned_cols=155 Identities=16% Similarity=0.226 Sum_probs=96.0
Q ss_pred HHHHHHHHHcC---CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHH
Q 029414 16 QLMAMLLRLVN---AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD 92 (194)
Q Consensus 16 ~~l~~l~~~~~---~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 92 (194)
.+|...+...+ -+++||+|||||-.+..+-... .+++++|+|..++++|.++ ++ --++.+.++..+++
T Consensus 112 ~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK----g~--YD~L~~Aea~~Fl~ 182 (287)
T COG4976 112 ELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK----GL--YDTLYVAEAVLFLE 182 (287)
T ss_pred HHHHHHHHhccCCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc----cc--hHHHHHHHHHHHhh
Confidence 44444444332 4699999999999988886654 4899999999999988765 21 12445566655554
Q ss_pred HHhhcCCCCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEeccccc---ccccCCCCCCCCCcccchHHHHHHH
Q 029414 93 QLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWG---GTVAVPEEQVPDHFRGSSRQAILDL 166 (194)
Q Consensus 93 ~~~~~~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
.. ..+.||+|..--. ......++..+..+|+|||.+.|+--... +-+..++.+.-+ -+.+
T Consensus 183 ~~-----~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH---------~~~Y 248 (287)
T COG4976 183 DL-----TQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAH---------SESY 248 (287)
T ss_pred hc-----cCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhcc---------chHH
Confidence 32 3578999975322 33455667778899999999999532211 111122111100 1233
Q ss_pred HHHhhcCCCeEEEee-----------ecCCeeEEEEEc
Q 029414 167 NRSLADDPRVQLSHV-----------ALGDGITICRRI 193 (194)
Q Consensus 167 ~~~l~~~~~~~~~~~-----------p~~~G~~i~~~~ 193 (194)
.+......+++++-+ |+.+++.|+||+
T Consensus 249 Vr~~l~~~Gl~~i~~~~ttiR~d~g~pv~G~L~iark~ 286 (287)
T COG4976 249 VRALLAASGLEVIAIEDTTIRRDAGEPVPGILVIARKK 286 (287)
T ss_pred HHHHHHhcCceEEEeecccchhhcCCCCCCceEEEecC
Confidence 333444455554433 778899999886
No 189
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.99 E-value=4.1e-09 Score=85.45 Aligned_cols=116 Identities=16% Similarity=0.161 Sum_probs=76.0
Q ss_pred ccccCCCCHHHHHHHHHHHHHc---CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcE
Q 029414 4 LRAMMGTAPDAGQLMAMLLRLV---NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKI 80 (194)
Q Consensus 4 ~~~~~~~~~~~~~~l~~l~~~~---~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v 80 (194)
...++++++...+.|...+... .+.++||+.||.|.+++.+|... .+|+++|+++++++.|++++..+++. |+
T Consensus 171 ~~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~-n~ 246 (352)
T PF05958_consen 171 PGSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGID-NV 246 (352)
T ss_dssp TTS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT---SE
T ss_pred CCcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCC-cc
Confidence 4578899999888888776532 23489999999999999999864 49999999999999999999999987 89
Q ss_pred EEEecchHHHHHHHhh---------cCCCCCceeEEEEeCCcccc-HHHHHHH
Q 029414 81 NFIESEALSVLDQLLK---------YSENEGSFDYAFVDADKDNY-CNYHERL 123 (194)
Q Consensus 81 ~~~~~d~~~~~~~~~~---------~~~~~~~fD~i~id~~~~~~-~~~~~~~ 123 (194)
+++.+++.++...+.. .......+|+|++|++.... ...++.+
T Consensus 247 ~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~ 299 (352)
T PF05958_consen 247 EFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELI 299 (352)
T ss_dssp EEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHH
T ss_pred eEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHH
Confidence 9999888765332210 00012368999999985443 3344444
No 190
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.99 E-value=2.1e-09 Score=78.66 Aligned_cols=98 Identities=12% Similarity=0.197 Sum_probs=73.7
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414 25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f 104 (194)
.++.+|||+|||.|....++... ++.+..++|++++.+..+.++ .+.++++|..+.+..+. +++|
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r--------Gv~Viq~Dld~gL~~f~-----d~sF 76 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR--------GVSVIQGDLDEGLADFP-----DQSF 76 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc--------CCCEEECCHHHhHhhCC-----CCCc
Confidence 45789999999999999998875 478999999999877665543 57799999999887763 6899
Q ss_pred eEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecc
Q 029414 105 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT 138 (194)
Q Consensus 105 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~ 138 (194)
|.|++... ...+...++++.+.-+ .+++-|.|.
T Consensus 77 D~VIlsqtLQ~~~~P~~vL~EmlRVgr-~~IVsFPNF 112 (193)
T PF07021_consen 77 DYVILSQTLQAVRRPDEVLEEMLRVGR-RAIVSFPNF 112 (193)
T ss_pred cEEehHhHHHhHhHHHHHHHHHHHhcC-eEEEEecCh
Confidence 99998754 3345556666655543 355555553
No 191
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.98 E-value=2e-09 Score=79.78 Aligned_cols=99 Identities=19% Similarity=0.213 Sum_probs=81.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecch
Q 029414 8 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 87 (194)
Q Consensus 8 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 87 (194)
.+.++...++-.....-..+..|+|..||.|..++.+|...+ .|+++|++|..+..|+.|++-.|+++++++++||.
T Consensus 76 vTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~---~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ 152 (263)
T KOG2730|consen 76 VTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP---YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDF 152 (263)
T ss_pred eccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC---eEEEEeccHHHHHHHhccceeecCCceeEEEechH
Confidence 345555566655555555788999999999999999999755 99999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCceeEEEEeCC
Q 029414 88 LSVLDQLLKYSENEGSFDYAFVDAD 112 (194)
Q Consensus 88 ~~~~~~~~~~~~~~~~fD~i~id~~ 112 (194)
.+....+... ...+|++|..++
T Consensus 153 ld~~~~lq~~---K~~~~~vf~spp 174 (263)
T KOG2730|consen 153 LDLASKLKAD---KIKYDCVFLSPP 174 (263)
T ss_pred HHHHHHHhhh---hheeeeeecCCC
Confidence 9987776322 235788988765
No 192
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.97 E-value=3.3e-09 Score=84.14 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=97.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec-c
Q 029414 8 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-E 86 (194)
Q Consensus 8 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d 86 (194)
-+..|..+..+..+++..++..|||--||||...+..... +.+++++|++..+++-++.|++..+++ ...+... |
T Consensus 179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~-~~~~~~~~D 254 (347)
T COG1041 179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIE-DYPVLKVLD 254 (347)
T ss_pred CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcC-ceeEEEecc
Confidence 4778999999999999999999999999999999888765 789999999999999999999999876 4545444 7
Q ss_pred hHHHHHHHhhcCCCCCceeEEEEeCCc------------cccHHHHHHHHhcccCCeEEEEe
Q 029414 87 ALSVLDQLLKYSENEGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 87 ~~~~~~~~~~~~~~~~~fD~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
+... + + ....+|.|..|++. .-+..+++.+.+.|++||.+++.
T Consensus 255 a~~l-p-l-----~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~ 309 (347)
T COG1041 255 ATNL-P-L-----RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA 309 (347)
T ss_pred cccC-C-C-----CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence 7554 2 3 12469999999861 12567889999999999999995
No 193
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.96 E-value=4.1e-09 Score=81.11 Aligned_cols=100 Identities=16% Similarity=0.208 Sum_probs=80.5
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 103 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 103 (194)
..+.++|+|||.|.|..+..+++.+| +.+++..|. |+.++.+++ .++++++.+|..+ .+ +.
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~---~~-------P~ 158 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAYP-NLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFD---PL-------PV 158 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHST-TSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTT---CC-------SS
T ss_pred ccCccEEEeccCcchHHHHHHHHHCC-CCcceeecc-Hhhhhcccc-------ccccccccccHHh---hh-------cc
Confidence 34567999999999999999999998 999999999 888888887 4599999999873 22 33
Q ss_pred eeEEEEeCC-----ccccHHHHHHHHhcccCC--eEEEEecccccc
Q 029414 104 FDYAFVDAD-----KDNYCNYHERLMKLLKVG--GIAVYDNTLWGG 142 (194)
Q Consensus 104 fD~i~id~~-----~~~~~~~~~~~~~~L~~g--G~lv~~~~~~~g 142 (194)
+|++++... .+.....++.+.+.|+|| |.|++.+...+.
T Consensus 159 ~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 159 ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence 999998765 345677899999999999 999998887544
No 194
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.95 E-value=8e-10 Score=82.96 Aligned_cols=111 Identities=12% Similarity=0.103 Sum_probs=76.0
Q ss_pred HHHHHHHHHHcCCC-eEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHH
Q 029414 15 GQLMAMLLRLVNAK-KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ 93 (194)
Q Consensus 15 ~~~l~~l~~~~~~~-~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 93 (194)
..++..++...+.+ .++|+|||+|..+..+|.... +|+++|+++.+++.+++........-..++-..+..+..
T Consensus 21 tdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~-- 95 (261)
T KOG3010|consen 21 TDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLL-- 95 (261)
T ss_pred HHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCcccccCCcccccccccccc--
Confidence 45677777776665 899999999988888888765 899999999999998877532211101111111111111
Q ss_pred HhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccCCe-EEEE
Q 029414 94 LLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGG-IAVY 135 (194)
Q Consensus 94 ~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~gG-~lv~ 135 (194)
...++.|+|.+... --+...+++.+.+.||++| +|.+
T Consensus 96 -----g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 96 -----GGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred -----CCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEE
Confidence 11478999987643 3466788999999998877 6655
No 195
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.92 E-value=8.5e-09 Score=81.13 Aligned_cols=82 Identities=12% Similarity=0.086 Sum_probs=67.9
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414 25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f 104 (194)
.++..++|++||.|..|..++..++++++|+++|.++++++.+++.+.. .+++++++++..++...+.. ...++
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~---~~~~v 91 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAE---GLGKV 91 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHc---CCCcc
Confidence 4567999999999999999999987679999999999999999998865 35899999999887554421 01379
Q ss_pred eEEEEeCC
Q 029414 105 DYAFVDAD 112 (194)
Q Consensus 105 D~i~id~~ 112 (194)
|.|++|..
T Consensus 92 DgIl~DLG 99 (296)
T PRK00050 92 DGILLDLG 99 (296)
T ss_pred CEEEECCC
Confidence 99999954
No 196
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.91 E-value=1.1e-09 Score=82.30 Aligned_cols=106 Identities=20% Similarity=0.204 Sum_probs=77.3
Q ss_pred CeEEEEcccccHHHHHHHhhCCCC--CEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH-HHHHhhcCCCCCce
Q 029414 28 KKTIEIGVFTGYSLLLTALTIPED--GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSENEGSF 104 (194)
Q Consensus 28 ~~vLeiG~G~G~~~~~la~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~~~~~~~f 104 (194)
.+|||+|||.|.....+.+..+ + -+++++|.+|.+++..+++..-.. .++.....|.... +... .+.+++
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~-n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~----~~~~sv 145 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSP-NNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEP----PEEGSV 145 (264)
T ss_pred hhheeeccCCCcccchhhhcCC-CCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCC----CCcCcc
Confidence 3799999999999999988776 5 789999999999999888764332 3454444444321 1111 234678
Q ss_pred eEEEEe----C-CccccHHHHHHHHhcccCCeEEEEecccc
Q 029414 105 DYAFVD----A-DKDNYCNYHERLMKLLKVGGIAVYDNTLW 140 (194)
Q Consensus 105 D~i~id----~-~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 140 (194)
|.|.+- + .+......++.+.++|||||.|++.|.-.
T Consensus 146 D~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 146 DIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred ceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence 877432 2 26678889999999999999999987543
No 197
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=1.5e-08 Score=83.69 Aligned_cols=127 Identities=15% Similarity=0.122 Sum_probs=98.6
Q ss_pred cccccCCCCHHHHHHHHHHHHHc----CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCC
Q 029414 3 ILRAMMGTAPDAGQLMAMLLRLV----NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH 78 (194)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~l~~~~----~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~ 78 (194)
+..++++++-..+++|+..+... ..+.++|+.||+|.+++.+|+.. .+|+++|++++.++.|+.+...+++.
T Consensus 356 Sp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~Ngis- 431 (534)
T KOG2187|consen 356 SPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGIS- 431 (534)
T ss_pred CCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCcc-
Confidence 56789999999999999988854 45789999999999999999964 59999999999999999999999987
Q ss_pred cEEEEecchHHHHHHHhhcCCCCCcee-EEEEeCCcc-ccHHHHHHHHhcccCCeEEEE
Q 029414 79 KINFIESEALSVLDQLLKYSENEGSFD-YAFVDADKD-NYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 79 ~v~~~~~d~~~~~~~~~~~~~~~~~fD-~i~id~~~~-~~~~~~~~~~~~L~~gG~lv~ 135 (194)
|.+++.|.+++.++.+.... .+.-+ ++++|.+.. -...+++.+...-++-=++.+
T Consensus 432 Na~Fi~gqaE~~~~sl~~~~--~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyv 488 (534)
T KOG2187|consen 432 NATFIVGQAEDLFPSLLTPC--CDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYV 488 (534)
T ss_pred ceeeeecchhhccchhcccC--CCCCceEEEECCCcccccHHHHHHHHhccCccceEEE
Confidence 99999999988887764330 12345 678887743 334555555544445544444
No 198
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=98.86 E-value=1.4e-08 Score=77.81 Aligned_cols=153 Identities=17% Similarity=0.169 Sum_probs=92.6
Q ss_pred cCCCCHHHHHHHHHHHHH----cCCCeEEEEcccccHHHHHHHhhC---C-CCCEEEEEeCCc-----------------
Q 029414 7 MMGTAPDAGQLMAMLLRL----VNAKKTIEIGVFTGYSLLLTALTI---P-EDGQITAIDVNR----------------- 61 (194)
Q Consensus 7 ~~~~~~~~~~~l~~l~~~----~~~~~vLeiG~G~G~~~~~la~~~---~-~~~~v~~iD~~~----------------- 61 (194)
+..+......-|..++.. .-+..++|+|+..|.+++.++..+ . .+-+++++|.-.
T Consensus 51 ~tm~g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~ 130 (248)
T PF05711_consen 51 HTMIGRERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWE 130 (248)
T ss_dssp S-SSHHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCT
T ss_pred ccccCHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhh
Confidence 333444444555555442 246789999999999887764332 1 245688888511
Q ss_pred ---------chHHhHHHHHHHcCC-CCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCC-ccccHHHHHHHHhcccCC
Q 029414 62 ---------ETYEIGLPIIKKAGV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-KDNYCNYHERLMKLLKVG 130 (194)
Q Consensus 62 ---------~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~-~~~~~~~~~~~~~~L~~g 130 (194)
...+..++++.+.++ +++++++.|.+.+.++... .+++-++.+|++ .+.....++.+++.|.||
T Consensus 131 ~~~~~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p-----~~~IAll~lD~DlYesT~~aLe~lyprl~~G 205 (248)
T PF05711_consen 131 FHEYNGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAP-----IERIALLHLDCDLYESTKDALEFLYPRLSPG 205 (248)
T ss_dssp CCGCCHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-T-----T--EEEEEE---SHHHHHHHHHHHGGGEEEE
T ss_pred hhhcccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCC-----CccEEEEEEeccchHHHHHHHHHHHhhcCCC
Confidence 023445566666665 3689999999999877642 367999999998 677888999999999999
Q ss_pred eEEEEecccccccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEEEeeecC
Q 029414 131 GIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG 184 (194)
Q Consensus 131 G~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~ 184 (194)
|+|+++|...+| .++++.+|.+... +...+.++.
T Consensus 206 GiIi~DDY~~~g----------------cr~AvdeF~~~~g----i~~~l~~id 239 (248)
T PF05711_consen 206 GIIIFDDYGHPG----------------CRKAVDEFRAEHG----ITDPLHPID 239 (248)
T ss_dssp EEEEESSTTTHH----------------HHHHHHHHHHHTT------S--EE-S
T ss_pred eEEEEeCCCChH----------------HHHHHHHHHHHcC----CCCccEEec
Confidence 999999976533 6677888766543 333344553
No 199
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.86 E-value=6.7e-08 Score=74.86 Aligned_cols=122 Identities=20% Similarity=0.260 Sum_probs=96.6
Q ss_pred HHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHH
Q 029414 17 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQ 93 (194)
Q Consensus 17 ~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~ 93 (194)
.+..+....++-+||||.||.|...+......+. ..++...|.++..++..++.+++.++.+-+++.++|+.+. +..
T Consensus 126 ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~ 205 (311)
T PF12147_consen 126 AIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAA 205 (311)
T ss_pred HHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhc
Confidence 3334444457889999999999999998888774 3689999999999999999999999997679999999874 333
Q ss_pred HhhcCCCCCceeEEEEeCCcc---c---cHHHHHHHHhcccCCeEEEEecccccccc
Q 029414 94 LLKYSENEGSFDYAFVDADKD---N---YCNYHERLMKLLKVGGIAVYDNTLWGGTV 144 (194)
Q Consensus 94 ~~~~~~~~~~fD~i~id~~~~---~---~~~~~~~~~~~L~~gG~lv~~~~~~~g~~ 144 (194)
+ ...++++++.+..+ + ....++.+...+.|||++|..+-.|+...
T Consensus 206 l------~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQl 256 (311)
T PF12147_consen 206 L------DPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQL 256 (311)
T ss_pred c------CCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcch
Confidence 2 46789999987622 2 33457778899999999999887776654
No 200
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.85 E-value=3.1e-08 Score=82.42 Aligned_cols=102 Identities=14% Similarity=0.104 Sum_probs=75.8
Q ss_pred CCeEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414 27 AKKTIEIGVFTGYSLLLTALTI---PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 103 (194)
Q Consensus 27 ~~~vLeiG~G~G~~~~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 103 (194)
.+.|+++|||+|-.+...+++. ....+|+++|-++.+....++.+...++.++|+++++|..++-. .++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l--------pek 258 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL--------PEK 258 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH--------SS-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC--------CCc
Confidence 4679999999999887766553 11469999999999888888888888998899999999987622 368
Q ss_pred eeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEe
Q 029414 104 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 104 fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
.|+|+.... .+-..+.+..+.+.|||||+++=+
T Consensus 259 vDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP~ 296 (448)
T PF05185_consen 259 VDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMIPS 296 (448)
T ss_dssp EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEESS
T ss_pred eeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEeCc
Confidence 999985522 344556778888999999988743
No 201
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.83 E-value=4.2e-08 Score=75.07 Aligned_cols=96 Identities=11% Similarity=0.079 Sum_probs=79.3
Q ss_pred cccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe
Q 029414 5 RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE 84 (194)
Q Consensus 5 ~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~ 84 (194)
+.+..-++.+..-+..-+...+++.|||+|.|+|..|..+.+. +.+|+++|++|.++....+++......+..++++
T Consensus 37 GQHilkNp~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~ 113 (315)
T KOG0820|consen 37 GQHILKNPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLH 113 (315)
T ss_pred chhhhcCHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEe
Confidence 3455556777777777777888899999999999999999986 5699999999999999999998766668999999
Q ss_pred cchHHHHHHHhhcCCCCCceeEEEEeCC
Q 029414 85 SEALSVLDQLLKYSENEGSFDYAFVDAD 112 (194)
Q Consensus 85 ~d~~~~~~~~~~~~~~~~~fD~i~id~~ 112 (194)
||.... +...||.++.+-+
T Consensus 114 gD~lK~---------d~P~fd~cVsNlP 132 (315)
T KOG0820|consen 114 GDFLKT---------DLPRFDGCVSNLP 132 (315)
T ss_pred cccccC---------CCcccceeeccCC
Confidence 998764 1367999988655
No 202
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.83 E-value=1.4e-08 Score=75.65 Aligned_cols=90 Identities=14% Similarity=0.216 Sum_probs=65.9
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414 25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f 104 (194)
.++.+|||+|||+|..+..++... ...++++|+++++++.+++. +++++.+|+.+.++.+ ..++|
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~-----~~~sf 76 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAF-----PDKSF 76 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhccccc-----CCCCc
Confidence 356799999999999999888653 45789999999988877541 4677888876533222 14689
Q ss_pred eEEEEeCC---ccccHHHHHHHHhcccC
Q 029414 105 DYAFVDAD---KDNYCNYHERLMKLLKV 129 (194)
Q Consensus 105 D~i~id~~---~~~~~~~~~~~~~~L~~ 129 (194)
|+|++... ..+...+++++.+.+++
T Consensus 77 D~Vi~~~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 77 DYVILSQTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred CEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence 99998754 34566777777776654
No 203
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.82 E-value=1.5e-08 Score=80.17 Aligned_cols=103 Identities=20% Similarity=0.289 Sum_probs=79.4
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 103 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 103 (194)
+.+++.|||+|||+|-.+++-|++. ..+|+++|-+. ..+.|++.+..+++.+.+++++|..+++ .++ .++
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi--~LP-----~eK 127 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDI--ELP-----VEK 127 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhC--cceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEE--ecC-----ccc
Confidence 4578999999999999999999874 47899999976 4599999999999998899999999886 221 278
Q ss_pred eeEEEEeCC--ccccHHHHHHHH----hcccCCeEEEEe
Q 029414 104 FDYAFVDAD--KDNYCNYHERLM----KLLKVGGIAVYD 136 (194)
Q Consensus 104 fD~i~id~~--~~~~~~~~~~~~----~~L~~gG~lv~~ 136 (194)
.|.|+.... .--+...++.++ +-|+|||+++=+
T Consensus 128 VDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 128 VDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred eeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence 999887643 111223333333 789999998654
No 204
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.79 E-value=2.6e-07 Score=70.64 Aligned_cols=133 Identities=14% Similarity=0.072 Sum_probs=87.6
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 105 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD 105 (194)
+.+++||||+|.|..|..++..+. +|++.|.|+.+....++ .| .+++..+ ++ .+ ...+||
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~rL~~----kg----~~vl~~~--~w-~~------~~~~fD 153 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRWRLSK----KG----FTVLDID--DW-QQ------TDFKFD 153 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHHHHHh----CC----CeEEehh--hh-hc------cCCceE
Confidence 567899999999999999999876 79999999987655443 34 3444322 22 11 146899
Q ss_pred EEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccccccccC--------CCCCCCCCcccchHHHHHHHHHHhhcCC
Q 029414 106 YAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAV--------PEEQVPDHFRGSSRQAILDLNRSLADDP 174 (194)
Q Consensus 106 ~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 174 (194)
+|-|-.. ...+...++.+.+.|+|+|.+++.-++-.-+..+ |.+..+-.-.+ ..+.+..|. .+-...
T Consensus 154 vIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~-~E~~v~~l~-~v~~p~ 231 (265)
T PF05219_consen 154 VISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGAT-FEEQVSSLV-NVFEPA 231 (265)
T ss_pred EEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCc-HHHHHHHHH-HHHHhc
Confidence 9976432 4567789999999999999999865544322211 11111222233 566677777 555566
Q ss_pred CeEEEe
Q 029414 175 RVQLSH 180 (194)
Q Consensus 175 ~~~~~~ 180 (194)
+|++..
T Consensus 232 GF~v~~ 237 (265)
T PF05219_consen 232 GFEVER 237 (265)
T ss_pred CCEEEE
Confidence 676543
No 205
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.79 E-value=2.5e-08 Score=69.67 Aligned_cols=111 Identities=23% Similarity=0.356 Sum_probs=75.3
Q ss_pred EEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCC------------ccccHHHH
Q 029414 53 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD------------KDNYCNYH 120 (194)
Q Consensus 53 ~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~------------~~~~~~~~ 120 (194)
+|+++|+.+++++.+++++++.++.++++++...-.. +..... .+++|+++.+-. .......+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~-l~~~i~----~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al 75 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHEN-LDEYIP----EGPVDAAIFNLGYLPGGDKSITTKPETTLKAL 75 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGG-GGGT------S--EEEEEEEESB-CTS-TTSB--HHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHH-HHhhCc----cCCcCEEEEECCcCCCCCCCCCcCcHHHHHHH
Confidence 6899999999999999999999988889999855444 333221 147999987622 24467889
Q ss_pred HHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEEEee
Q 029414 121 ERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHV 181 (194)
Q Consensus 121 ~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (194)
+.++++|+|||+|++ +.++|+..... ..+++.+|.+.|. ...|.+...
T Consensus 76 ~~al~lL~~gG~i~i--v~Y~GH~gG~e----------E~~av~~~~~~L~-~~~~~V~~~ 123 (140)
T PF06962_consen 76 EAALELLKPGGIITI--VVYPGHPGGKE----------ESEAVEEFLASLD-QKEFNVLKY 123 (140)
T ss_dssp HHHHHHEEEEEEEEE--EE--STCHHHH----------HHHHHHHHHHTS--TTTEEEEEE
T ss_pred HHHHHhhccCCEEEE--EEeCCCCCCHH----------HHHHHHHHHHhCC-cceEEEEEE
Confidence 999999999999999 67777654332 5556777766662 235666555
No 206
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.77 E-value=3.8e-08 Score=76.52 Aligned_cols=104 Identities=20% Similarity=0.288 Sum_probs=70.5
Q ss_pred CCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHH-HcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414 27 AKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK-KAGVDHKINFIESEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 27 ~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f 104 (194)
|++|+=||||. -.+++.++.....+..++++|+++++.+.+++.+. ..++..+++++.+|..+...++ ..|
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl-------~~~ 193 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL-------KEY 193 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-----------
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc-------ccC
Confidence 56999999995 56777787654447889999999999999999888 5677788999999987654343 689
Q ss_pred eEEEEeCCcc----ccHHHHHHHHhcccCCeEEEEec
Q 029414 105 DYAFVDADKD----NYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 105 D~i~id~~~~----~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
|+||+.+-.. .-...++++.+.++||+.|++..
T Consensus 194 DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 194 DVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred CEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 9999987644 77889999999999999999974
No 207
>PRK04148 hypothetical protein; Provisional
Probab=98.76 E-value=9.8e-08 Score=66.30 Aligned_cols=98 Identities=12% Similarity=0.098 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHcCCCeEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHH
Q 029414 14 AGQLMAMLLRLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD 92 (194)
Q Consensus 14 ~~~~l~~l~~~~~~~~vLeiG~G~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 92 (194)
.+++|.......++.+++|||||+|. .+..|++. +..|+++|+++..++.++++ .+.++.+|..+.-.
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~ 72 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNL 72 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCH
Confidence 34455544444456889999999997 77777764 67999999999988877765 35778888776434
Q ss_pred HHhhcCCCCCceeEEEEeCCccccHHHHHHHHhccc
Q 029414 93 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLK 128 (194)
Q Consensus 93 ~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~ 128 (194)
.+ -+.+|+|+.-.+.++....+-.+.+.+.
T Consensus 73 ~~------y~~a~liysirpp~el~~~~~~la~~~~ 102 (134)
T PRK04148 73 EI------YKNAKLIYSIRPPRDLQPFILELAKKIN 102 (134)
T ss_pred HH------HhcCCEEEEeCCCHHHHHHHHHHHHHcC
Confidence 43 3679999987776666666555555544
No 208
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.70 E-value=8.6e-08 Score=76.89 Aligned_cols=107 Identities=19% Similarity=0.205 Sum_probs=71.3
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC---------CCCcEEEEecchHH-HHHHHh
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG---------VDHKINFIESEALS-VLDQLL 95 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---------~~~~v~~~~~d~~~-~~~~~~ 95 (194)
++.+|||+|||-|....-...+ .-.+++++|++.+.++.|+++..... ..-...++.+|... .+....
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 5679999999988755555443 25699999999999999999993311 11245677787654 222221
Q ss_pred hcCCCCCceeEEEEeCC-------ccccHHHHHHHHhcccCCeEEEEe
Q 029414 96 KYSENEGSFDYAFVDAD-------KDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 96 ~~~~~~~~fD~i~id~~-------~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
.. ...+||+|=|... .+....+++.+...|+|||+++..
T Consensus 140 ~~--~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 140 PP--RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp SS--TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cc--cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 11 1258999977754 344567899999999999999984
No 209
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.64 E-value=4.5e-07 Score=67.26 Aligned_cols=107 Identities=17% Similarity=0.197 Sum_probs=84.8
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414 25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f 104 (194)
.++.+||++|-|.|.....+-+.- -.+.+.||.+|+.+.+.++.- +.-..||.++.|..++.++.+. ++.|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~--p~~H~IiE~hp~V~krmr~~g--w~ek~nViil~g~WeDvl~~L~-----d~~F 170 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAP--PDEHWIIEAHPDVLKRMRDWG--WREKENVIILEGRWEDVLNTLP-----DKHF 170 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcC--CcceEEEecCHHHHHHHHhcc--cccccceEEEecchHhhhcccc-----ccCc
Confidence 578999999999999888886653 356667899999988776653 1112689999999999888874 5679
Q ss_pred eEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414 105 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW 140 (194)
Q Consensus 105 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 140 (194)
|=|+-|.. .++...+.+.+.++|||+|++-+-|.+.
T Consensus 171 DGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~ 209 (271)
T KOG1709|consen 171 DGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGLG 209 (271)
T ss_pred ceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecCcc
Confidence 99999976 4566777889999999999998866554
No 210
>PRK10742 putative methyltransferase; Provisional
Probab=98.61 E-value=3.9e-07 Score=69.60 Aligned_cols=88 Identities=10% Similarity=0.179 Sum_probs=71.5
Q ss_pred HHHHHHHHHcCCC--eEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc------C--CCCcEEEEec
Q 029414 16 QLMAMLLRLVNAK--KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA------G--VDHKINFIES 85 (194)
Q Consensus 16 ~~l~~l~~~~~~~--~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~------~--~~~~v~~~~~ 85 (194)
+.|...+...++. +|||+.+|+|..+..+|.. +++|+.+|.++......+++++.. + +..+++++++
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 4444555455555 8999999999999999986 668999999999999999998874 2 2257999999
Q ss_pred chHHHHHHHhhcCCCCCceeEEEEeCC
Q 029414 86 EALSVLDQLLKYSENEGSFDYAFVDAD 112 (194)
Q Consensus 86 d~~~~~~~~~~~~~~~~~fD~i~id~~ 112 (194)
|+.+++... ...||+||+|+.
T Consensus 153 da~~~L~~~------~~~fDVVYlDPM 173 (250)
T PRK10742 153 SSLTALTDI------TPRPQVVYLDPM 173 (250)
T ss_pred cHHHHHhhC------CCCCcEEEECCC
Confidence 999998774 357999999976
No 211
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.61 E-value=9.9e-08 Score=68.95 Aligned_cols=78 Identities=14% Similarity=0.164 Sum_probs=60.6
Q ss_pred EEEeCCcchHHhHHHHHHHcC--CCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCC---ccccHHHHHHHHhcccC
Q 029414 55 TAIDVNRETYEIGLPIIKKAG--VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKV 129 (194)
Q Consensus 55 ~~iD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~ 129 (194)
+++|+++++++.|+++....+ ..++++++++|+.+. +. ..++||+|++... ..+....++++.+.|||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-p~------~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkp 73 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-PF------DDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKP 73 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-CC------CCCCeeEEEecchhhcCCCHHHHHHHHHHHcCc
Confidence 479999999999987765322 234799999998764 22 1468999988753 45778899999999999
Q ss_pred CeEEEEeccc
Q 029414 130 GGIAVYDNTL 139 (194)
Q Consensus 130 gG~lv~~~~~ 139 (194)
||.+++.+..
T Consensus 74 GG~l~i~d~~ 83 (160)
T PLN02232 74 GSRVSILDFN 83 (160)
T ss_pred CeEEEEEECC
Confidence 9999987654
No 212
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.61 E-value=9.4e-08 Score=71.09 Aligned_cols=95 Identities=21% Similarity=0.215 Sum_probs=69.8
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 029414 27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 106 (194)
Q Consensus 27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~ 106 (194)
+.-|||||||+|.++..+... +...+++|+||.+++.|.+.- . + -.++.+|-.+-++- ..+.||-
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~e--~--e--gdlil~DMG~Glpf------rpGtFDg 115 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVERE--L--E--GDLILCDMGEGLPF------RPGTFDG 115 (270)
T ss_pred CcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHhh--h--h--cCeeeeecCCCCCC------CCCccce
Confidence 678999999999999988763 678999999999999998632 1 1 24555665554433 2588998
Q ss_pred EEEeC--------C------ccccHHHHHHHHhcccCCeEEEEe
Q 029414 107 AFVDA--------D------KDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 107 i~id~--------~------~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
++.-. . +.....||..++..|++|+.-|+.
T Consensus 116 ~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 116 VISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred EEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 86432 2 122356788889999999999885
No 213
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.59 E-value=6.5e-07 Score=67.12 Aligned_cols=99 Identities=18% Similarity=0.172 Sum_probs=73.6
Q ss_pred EEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 029414 30 TIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFV 109 (194)
Q Consensus 30 vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~i 109 (194)
|.||||--|+...++++... ..+++++|+++.-++.|+++++..++.+++++..+|..+.++. .+..|.|++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-------~e~~d~ivI 72 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-------GEDVDTIVI 72 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-------GG---EEEE
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-------CCCCCEEEE
Confidence 68999999999999999754 5689999999999999999999999999999999999887654 234899988
Q ss_pred eCC-ccccHHHHHHHHhcccCCeEEEEe
Q 029414 110 DAD-KDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 110 d~~-~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
.+. ..-....++.....++....+|+.
T Consensus 73 AGMGG~lI~~ILe~~~~~~~~~~~lILq 100 (205)
T PF04816_consen 73 AGMGGELIIEILEAGPEKLSSAKRLILQ 100 (205)
T ss_dssp EEE-HHHHHHHHHHTGGGGTT--EEEEE
T ss_pred ecCCHHHHHHHHHhhHHHhccCCeEEEe
Confidence 765 334456667666667666677775
No 214
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=98.58 E-value=7.3e-07 Score=69.09 Aligned_cols=149 Identities=17% Similarity=0.211 Sum_probs=114.4
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc--CCC-CcEEEEecchHHHHHHHhhcCCC
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GVD-HKINFIESEALSVLDQLLKYSEN 100 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~~-~~v~~~~~d~~~~~~~~~~~~~~ 100 (194)
..+|+++|-||-|-|......+++ +.-+.++.+|++...++..++.+... +.+ +++.+..||...++....
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~----- 192 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK----- 192 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc-----
Confidence 557899999999999999988887 44678999999999999999988764 333 689999999999887763
Q ss_pred CCceeEEEEeCCc-------cccHHHHHHHHhcccCCeEEEEec-ccccccccCCCCCCCCCcccchHHHHHHHHHHhhc
Q 029414 101 EGSFDYAFVDADK-------DNYCNYHERLMKLLKVGGIAVYDN-TLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 172 (194)
Q Consensus 101 ~~~fD~i~id~~~-------~~~~~~~~~~~~~L~~gG~lv~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 172 (194)
.++||+|+.|... .....++..+.+.||+||+++... ..|-- .. ....+++|...+-.
T Consensus 193 ~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~------~~--------~i~e~r~~~~~~f~ 258 (337)
T KOG1562|consen 193 ENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLH------LD--------YIKEGRSFCYVIFD 258 (337)
T ss_pred cCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHH------HH--------HHHHHHHhHHHhcC
Confidence 4789999999752 224567888899999999999843 22211 01 44557888888877
Q ss_pred CCCeEEEeeecC----CeeEEEEE
Q 029414 173 DPRVQLSHVALG----DGITICRR 192 (194)
Q Consensus 173 ~~~~~~~~~p~~----~G~~i~~~ 192 (194)
.-.+-.+..|.. -|+.+|.+
T Consensus 259 ~t~ya~ttvPTypsg~igf~l~s~ 282 (337)
T KOG1562|consen 259 LTAYAITTVPTYPSGRIGFMLCSK 282 (337)
T ss_pred ccceeeecCCCCccceEEEEEecc
Confidence 778888888854 46666663
No 215
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.56 E-value=3.5e-07 Score=72.15 Aligned_cols=110 Identities=12% Similarity=0.147 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHH
Q 029414 13 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD 92 (194)
Q Consensus 13 ~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 92 (194)
+..++|.... ..+++.|||+|||+|..+.+.|.+. ..+|+++|.+. +.+.|++.++.+.+.+++.++.|..+++
T Consensus 165 Y~~Ail~N~s-DF~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdi-- 238 (517)
T KOG1500|consen 165 YQRAILENHS-DFQDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDI-- 238 (517)
T ss_pred HHHHHHhccc-ccCCcEEEEecCCccHHHHHHHHhC--cceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccc--
Confidence 3344444333 2357899999999999998888763 46899999864 8999999999998889999999998776
Q ss_pred HHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEE
Q 029414 93 QLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAV 134 (194)
Q Consensus 93 ~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv 134 (194)
++ .++.|+|+..+. -+...+-+-.+.+.|+|+|...
T Consensus 239 eL------PEk~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 239 EL------PEKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred cC------chhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 22 368998887653 2233333445668999999875
No 216
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.56 E-value=3e-07 Score=74.36 Aligned_cols=113 Identities=19% Similarity=0.231 Sum_probs=89.9
Q ss_pred HHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCC
Q 029414 21 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 100 (194)
Q Consensus 21 l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 100 (194)
.+...++.+|||..+..|.=|.++|..+...|.|++.|.+...+...+.++.+.|+. +..+...|..++.....
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~~~~----- 309 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPEKEF----- 309 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCccccccccc-----
Confidence 344556789999999999999999999987799999999999999999999999987 56666667765432221
Q ss_pred CCceeEEEEeCCccc-------------------------cHHHHHHHHhcccCCeEEEEeccc
Q 029414 101 EGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTL 139 (194)
Q Consensus 101 ~~~fD~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~ 139 (194)
.++||-|++|++.+. ..+.+..+..++++||+||.+.+.
T Consensus 310 ~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 310 PGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred CcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 348999999965111 245677888999999999998765
No 217
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.53 E-value=1.9e-07 Score=71.03 Aligned_cols=92 Identities=14% Similarity=0.126 Sum_probs=57.8
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHh-HHHHHHHcCCCCcEE-EEecchHHH-HHHHhhcCCCCC
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI-GLPIIKKAGVDHKIN-FIESEALSV-LDQLLKYSENEG 102 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~-a~~~~~~~~~~~~v~-~~~~d~~~~-~~~~~~~~~~~~ 102 (194)
+++++||+|||+|.++..+++. + ..+|+++|+++.++.. .+++ +++. +...|.... ..... .+..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~~~l~~~l~~~-------~~v~~~~~~ni~~~~~~~~~---~d~~ 142 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGYNQLAEKLRQD-------ERVKVLERTNIRYVTPADIF---PDFA 142 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHhcC-------CCeeEeecCCcccCCHhHcC---CCce
Confidence 5678999999999999999986 2 4689999999976654 2221 1322 222222211 01110 0124
Q ss_pred ceeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414 103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
.+|+.|+.. ...+..+.+.|++ |.+++
T Consensus 143 ~~DvsfiS~-----~~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 143 TFDVSFISL-----ISILPELDLLLNP-NDLTL 169 (228)
T ss_pred eeeEEEeeh-----HhHHHHHHHHhCc-CeEEE
Confidence 677777643 3357888899999 77665
No 218
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.53 E-value=1.7e-06 Score=69.04 Aligned_cols=106 Identities=20% Similarity=0.276 Sum_probs=84.9
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHH--HH---cCC-CCcEEEEecchHHHHHHHhhcC
Q 029414 25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII--KK---AGV-DHKINFIESEALSVLDQLLKYS 98 (194)
Q Consensus 25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~--~~---~~~-~~~v~~~~~d~~~~~~~~~~~~ 98 (194)
....+||-+|.|-|--...+.+. |.-.+++-+|.+|++++.++++. .. ... +++++++..|+..++..-
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a---- 362 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA---- 362 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh----
Confidence 35678999999999999999875 43689999999999999998443 22 222 378999999999998875
Q ss_pred CCCCceeEEEEeCCcc--------ccHHHHHHHHhcccCCeEEEEec
Q 029414 99 ENEGSFDYAFVDADKD--------NYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 99 ~~~~~fD~i~id~~~~--------~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
.+.||+|++|-..+ .-.+++..+.+.|+++|++|++.
T Consensus 363 --~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 363 --ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred --cccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 46899999996522 23577888899999999999964
No 219
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.53 E-value=5.7e-07 Score=73.39 Aligned_cols=126 Identities=17% Similarity=0.202 Sum_probs=89.6
Q ss_pred ccCCCCHHHHHHH---HHHHHH--cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCC-c
Q 029414 6 AMMGTAPDAGQLM---AMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-K 79 (194)
Q Consensus 6 ~~~~~~~~~~~~l---~~l~~~--~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~ 79 (194)
|.|..+++..-++ ...... .++-++||.=+|+|.=++-.+..++...+|+.-|+++++.+.+++|++.+++.+ +
T Consensus 24 P~~~~nRDlsvl~~~~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~ 103 (377)
T PF02005_consen 24 PVMEFNRDLSVLAIRYLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDER 103 (377)
T ss_dssp GGGHHHHHHHHHH---HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCC
T ss_pred cchhcccceeehhHHHHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCce
Confidence 4445555555555 222222 134589999999999999998886545799999999999999999999999986 7
Q ss_pred EEEEecchHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414 80 INFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 138 (194)
Q Consensus 80 v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 138 (194)
+++.+.|+...+... ...||+|=+|+. .....+++.+.+.++.||+|.+..+
T Consensus 104 ~~v~~~DAn~ll~~~------~~~fD~IDlDPf-GSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 104 IEVSNMDANVLLYSR------QERFDVIDLDPF-GSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp EEEEES-HHHHHCHS------TT-EEEEEE--S-S--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred EEEehhhHHHHhhhc------cccCCEEEeCCC-CCccHhHHHHHHHhhcCCEEEEecc
Confidence 999999998876421 478999999974 4556899999999999999998543
No 220
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.50 E-value=2e-06 Score=73.45 Aligned_cols=105 Identities=15% Similarity=0.134 Sum_probs=71.0
Q ss_pred cccCCCCHHHHHHHHHHHHHc------CCCeEEEEcccccHHHHHHHhhCCC-------CCEEEEEeCCcchHHhHHHHH
Q 029414 5 RAMMGTAPDAGQLMAMLLRLV------NAKKTIEIGVFTGYSLLLTALTIPE-------DGQITAIDVNRETYEIGLPII 71 (194)
Q Consensus 5 ~~~~~~~~~~~~~l~~l~~~~------~~~~vLeiG~G~G~~~~~la~~~~~-------~~~v~~iD~~~~~~~~a~~~~ 71 (194)
+.+++....+..++..+.... ...+|||.+||+|.+...++..++. ...++++|+++..+..++.++
T Consensus 4 GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l 83 (524)
T TIGR02987 4 GTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL 83 (524)
T ss_pred cccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence 456666666666666554321 3458999999999999988876631 257899999999999999998
Q ss_pred HHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCC
Q 029414 72 KKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 112 (194)
Q Consensus 72 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~ 112 (194)
...+. ..+.+..+|.......... ...+.||+|+.+++
T Consensus 84 ~~~~~-~~~~i~~~d~l~~~~~~~~--~~~~~fD~IIgNPP 121 (524)
T TIGR02987 84 GEFAL-LEINVINFNSLSYVLLNIE--SYLDLFDIVITNPP 121 (524)
T ss_pred hhcCC-CCceeeecccccccccccc--cccCcccEEEeCCC
Confidence 87652 2355666665432111100 11358999998876
No 221
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.48 E-value=1.2e-06 Score=68.26 Aligned_cols=124 Identities=12% Similarity=0.051 Sum_probs=87.9
Q ss_pred ccccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEE
Q 029414 4 LRAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI 83 (194)
Q Consensus 4 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~ 83 (194)
+++++..++.....+...+...+...|||+|+|.|..|..++... .+++++|.++...+..++.+. ..++++++
T Consensus 8 ~gQnFL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi 81 (262)
T PF00398_consen 8 LGQNFLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA---SNPNVEVI 81 (262)
T ss_dssp CTSSEEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT---TCSSEEEE
T ss_pred CCcCeeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh---hcccceee
Confidence 456677788888888888877788999999999999999999875 699999999999999888775 33589999
Q ss_pred ecchHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhccc---CCeEEEEec
Q 029414 84 ESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLK---VGGIAVYDN 137 (194)
Q Consensus 84 ~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~---~gG~lv~~~ 137 (194)
.+|+.++-.... .......|+..-+.......+..+...-+ ...++++..
T Consensus 82 ~~D~l~~~~~~~----~~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~vq~ 134 (262)
T PF00398_consen 82 NGDFLKWDLYDL----LKNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLMVQK 134 (262)
T ss_dssp ES-TTTSCGGGH----CSSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEEEH
T ss_pred ecchhccccHHh----hcCCceEEEEEecccchHHHHHHHhhcccccccceEEEEeh
Confidence 999987521100 01345566665554444456666665333 335566643
No 222
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.48 E-value=1.4e-06 Score=65.20 Aligned_cols=106 Identities=18% Similarity=0.155 Sum_probs=74.0
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 103 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 103 (194)
..++.+||-+|+.+|.....++.-..++|.|+++|.++......-...++. +|+-.+.+|+.....-.. --+.
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~----lv~~ 143 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRM----LVEM 143 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTT----TS--
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhc----cccc
Confidence 345789999999999999999999888999999999996555444333333 388888889865321111 1368
Q ss_pred eeEEEEeCCcccc-HHHHHHHHhcccCCeEEEEe
Q 029414 104 FDYAFVDADKDNY-CNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 104 fD~i~id~~~~~~-~~~~~~~~~~L~~gG~lv~~ 136 (194)
.|+||.|-..++. .-+...+...||+||.+++.
T Consensus 144 VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 144 VDVIFQDVAQPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccEEEecCCChHHHHHHHHHHHhhccCCcEEEEE
Confidence 9999999875554 44556777899999998873
No 223
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.47 E-value=2.6e-06 Score=63.87 Aligned_cols=111 Identities=17% Similarity=0.237 Sum_probs=68.3
Q ss_pred HHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHH-------HcCC-CCcEEEEecchHHH--H
Q 029414 22 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK-------KAGV-DHKINFIESEALSV--L 91 (194)
Q Consensus 22 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-------~~~~-~~~v~~~~~d~~~~--~ 91 (194)
+...+....+|+|||.|......|...+ -.+.+|||+.+...+.|++..+ ..+. ..++++.++|..+. .
T Consensus 38 ~~l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~ 116 (205)
T PF08123_consen 38 LNLTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFV 116 (205)
T ss_dssp TT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHH
T ss_pred hCCCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhH
Confidence 3455678999999999999888887654 5679999999998877764332 3343 25788899998653 2
Q ss_pred HHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414 92 DQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTL 139 (194)
Q Consensus 92 ~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~ 139 (194)
..+. ..-|+||++.. .+.....+......||+|..||.-..+
T Consensus 117 ~~~~------s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~~~~ 160 (205)
T PF08123_consen 117 KDIW------SDADVVFVNNTCFDPDLNLALAELLLELKPGARIISTKPF 160 (205)
T ss_dssp HHHG------HC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEESS-S
T ss_pred hhhh------cCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEECCCc
Confidence 3331 45799999865 345556667777899999988875433
No 224
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.46 E-value=7.5e-07 Score=71.10 Aligned_cols=122 Identities=21% Similarity=0.247 Sum_probs=81.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhC------CCCCEEEEEeCCcchHHhHHHHHHHcCCCC-cEE
Q 029414 9 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI------PEDGQITAIDVNRETYEIGLPIIKKAGVDH-KIN 81 (194)
Q Consensus 9 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~------~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~v~ 81 (194)
-+......++..++...+..+|+|-.||+|.+...+...+ .....++|+|+++.....++-++.-.+... +..
T Consensus 29 ~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~ 108 (311)
T PF02384_consen 29 YTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNIN 108 (311)
T ss_dssp ---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCE
T ss_pred ehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccc
Confidence 3456677888888877777799999999999988877643 126799999999999999998876666442 346
Q ss_pred EEecchHHHHHHHhhcCCCCCceeEEEEeCCcc------------------------ccHHHHHHHHhcccCCeEEEE
Q 029414 82 FIESEALSVLDQLLKYSENEGSFDYAFVDADKD------------------------NYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 82 ~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~------------------------~~~~~~~~~~~~L~~gG~lv~ 135 (194)
+..+|+....... ....||+|+.+++.. ....++..+.+.|++||.+++
T Consensus 109 i~~~d~l~~~~~~-----~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~ 181 (311)
T PF02384_consen 109 IIQGDSLENDKFI-----KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAI 181 (311)
T ss_dssp EEES-TTTSHSCT-----ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEE
T ss_pred ccccccccccccc-----cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeE
Confidence 8888875532110 136899999886510 113578899999999998655
No 225
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=4.9e-06 Score=61.84 Aligned_cols=100 Identities=20% Similarity=0.212 Sum_probs=72.2
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH--HHHHHhhcCCCCCc
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGS 103 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~ 103 (194)
++..|+|+|+..|.++-..++.+.++++|+++|+.|-. .-+++.++++|+.+ .+..+... ....+
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------------~~~~V~~iq~d~~~~~~~~~l~~~-l~~~~ 111 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------------PIPGVIFLQGDITDEDTLEKLLEA-LGGAP 111 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------------cCCCceEEeeeccCccHHHHHHHH-cCCCC
Confidence 56899999999999999999999878889999998721 12468999988754 23332211 12245
Q ss_pred eeEEEEeCCc--------c------ccHHHHHHHHhcccCCeEEEEecc
Q 029414 104 FDYAFVDADK--------D------NYCNYHERLMKLLKVGGIAVYDNT 138 (194)
Q Consensus 104 fD~i~id~~~--------~------~~~~~~~~~~~~L~~gG~lv~~~~ 138 (194)
+|+|..|..+ . -....++.+...|+|||.+++-..
T Consensus 112 ~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 112 VDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred cceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 7999999652 1 123445667789999999999754
No 226
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.44 E-value=5.7e-07 Score=65.41 Aligned_cols=101 Identities=9% Similarity=0.099 Sum_probs=80.3
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 105 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD 105 (194)
....+.|+|+|+|-.+...|.. ..+|+++|.+|.....|.+++.-.+.. |++++.+|+.+.- -+.-|
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~-n~evv~gDA~~y~---------fe~AD 98 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDV-NWEVVVGDARDYD---------FENAD 98 (252)
T ss_pred hhhceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCc-ceEEEeccccccc---------ccccc
Confidence 3478999999999999888876 359999999999999999999777765 8999999997741 24578
Q ss_pred EEEEeCC-----ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414 106 YAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL 139 (194)
Q Consensus 106 ~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~ 139 (194)
.|+|..- .+.....+..++..|+-++.|+-..+.
T Consensus 99 vvicEmlDTaLi~E~qVpV~n~vleFLr~d~tiiPq~v~ 137 (252)
T COG4076 99 VVICEMLDTALIEEKQVPVINAVLEFLRYDPTIIPQEVR 137 (252)
T ss_pred eeHHHHhhHHhhcccccHHHHHHHHHhhcCCccccHHHh
Confidence 8876532 345567788888999999998865543
No 227
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.40 E-value=6.4e-06 Score=65.17 Aligned_cols=83 Identities=12% Similarity=0.098 Sum_probs=68.0
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414 25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f 104 (194)
.++..++|..+|.|..+..++..++ +++|+++|.++++++.+++.+..+ .+++.++++++.++...+... ...++
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~--~~~~v 93 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDEL--LVTKI 93 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhc--CCCcc
Confidence 4567999999999999999999887 599999999999999999998765 358999999998765444221 12579
Q ss_pred eEEEEeCC
Q 029414 105 DYAFVDAD 112 (194)
Q Consensus 105 D~i~id~~ 112 (194)
|.|++|-.
T Consensus 94 DgIl~DLG 101 (305)
T TIGR00006 94 DGILVDLG 101 (305)
T ss_pred cEEEEecc
Confidence 99999954
No 228
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.40 E-value=1.3e-06 Score=64.31 Aligned_cols=99 Identities=18% Similarity=0.257 Sum_probs=62.0
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH--HHHHHhhc-CCCCC
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKY-SENEG 102 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~-~~~~~ 102 (194)
++.++||+||+.|.++..++....+.++|+++|+.+. ... .++..+.+|..+ ....+... ....+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~ 90 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGE 90 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccchhhHHHhhhhhcccccc
Confidence 3479999999999999999998744689999999875 111 355665665432 11111110 00126
Q ss_pred ceeEEEEeCCc--------------cccHHHHHHHHhcccCCeEEEEe
Q 029414 103 SFDYAFVDADK--------------DNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 103 ~fD~i~id~~~--------------~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
++|+|++|... .-....+..+...|+|||.+|+-
T Consensus 91 ~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K 138 (181)
T PF01728_consen 91 KFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK 138 (181)
T ss_dssp SESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred CcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence 89999999830 11234455666889999988874
No 229
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.37 E-value=1.8e-06 Score=67.71 Aligned_cols=108 Identities=18% Similarity=0.214 Sum_probs=75.9
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC-----CcEEEEecchHHH-HHHHhhcC
Q 029414 25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-----HKINFIESEALSV-LDQLLKYS 98 (194)
Q Consensus 25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~-~~~~~~~~ 98 (194)
.+...++++|||-|...+-.-++. =+.++++|+....++.|+++.+...-- -.+.++.+|.... +..+...
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~- 192 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF- 192 (389)
T ss_pred ccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC-
Confidence 356789999999998776665441 368999999999999999888754311 1367888887653 3333211
Q ss_pred CCCCceeEEEEeCC-------ccccHHHHHHHHhcccCCeEEEEe
Q 029414 99 ENEGSFDYAFVDAD-------KDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 99 ~~~~~fD~i~id~~-------~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
.+++||+|=+.-. .+...-++..+.+.|+|||++|-.
T Consensus 193 -~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 193 -KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred -CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 1345999855422 344556788899999999999873
No 230
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.36 E-value=1.7e-06 Score=61.04 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=49.8
Q ss_pred eEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecch
Q 029414 29 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 87 (194)
Q Consensus 29 ~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 87 (194)
+++|+|||.|..+.+++...+ ..+++++|++++.++.++++++.++++ +++++....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al 57 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAV 57 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeee
Confidence 489999999999999998875 679999999999999999999988875 577776554
No 231
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.36 E-value=6.2e-07 Score=66.80 Aligned_cols=105 Identities=23% Similarity=0.256 Sum_probs=64.4
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCC--------CCEEEEEeCCcchHHhHHHHH--------------HHc-----C---
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPE--------DGQITAIDVNRETYEIGLPII--------------KKA-----G--- 75 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~--------~~~v~~iD~~~~~~~~a~~~~--------------~~~-----~--- 75 (194)
++-+|+-.||++|.-+..+|..+.+ ..+|+++|+|+..++.|++-. .+. +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4569999999999755554433321 358999999999998876422 100 0
Q ss_pred -----CCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEec
Q 029414 76 -----VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 76 -----~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
+-.+|++...|..+..+. .+.||+|||... .+.....++.+.+.|+|||+|++-.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~-------~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPP-------FGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S-------------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcc-------cCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 012477777776661121 478999999865 4455788899999999999999953
No 232
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.33 E-value=2.9e-06 Score=63.04 Aligned_cols=121 Identities=14% Similarity=0.151 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHH
Q 029414 14 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ 93 (194)
Q Consensus 14 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 93 (194)
+-.++..+....+...|-|+|||-+..+..+ +....|.++|.-+. +-.+..+|.... |-
T Consensus 60 vd~iI~~l~~~~~~~viaD~GCGdA~la~~~----~~~~~V~SfDLva~----------------n~~Vtacdia~v-PL 118 (219)
T PF05148_consen 60 VDVIIEWLKKRPKSLVIADFGCGDAKLAKAV----PNKHKVHSFDLVAP----------------NPRVTACDIANV-PL 118 (219)
T ss_dssp HHHHHHHHCTS-TTS-EEEES-TT-HHHHH------S---EEEEESS-S----------------STTEEES-TTS--S-
T ss_pred HHHHHHHHHhcCCCEEEEECCCchHHHHHhc----ccCceEEEeeccCC----------------CCCEEEecCccC-cC
Confidence 3445555555555578999999998877443 33457999998541 223555666443 11
Q ss_pred HhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHHHHHHhh
Q 029414 94 LLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLA 171 (194)
Q Consensus 94 ~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 171 (194)
+++..|++++.-. ..++..++++++|.|||||.+.+.++...= . .+++|.+.+.
T Consensus 119 ------~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf------~------------~~~~F~~~~~ 174 (219)
T PF05148_consen 119 ------EDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRF------E------------NVKQFIKALK 174 (219)
T ss_dssp -------TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-------S-------------HHHHHHHHH
T ss_pred ------CCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccC------c------------CHHHHHHHHH
Confidence 1578999987654 679999999999999999999998765211 1 1788888876
Q ss_pred cCCCeEEEe
Q 029414 172 DDPRVQLSH 180 (194)
Q Consensus 172 ~~~~~~~~~ 180 (194)
.- +|....
T Consensus 175 ~~-GF~~~~ 182 (219)
T PF05148_consen 175 KL-GFKLKS 182 (219)
T ss_dssp CT-TEEEEE
T ss_pred HC-CCeEEe
Confidence 43 554443
No 233
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.31 E-value=1.2e-05 Score=64.32 Aligned_cols=108 Identities=11% Similarity=0.045 Sum_probs=77.2
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCcchHHhHHHHHHHcCCCCcEE--EEecchHHHHHHHhhcCCC
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKKAGVDHKIN--FIESEALSVLDQLLKYSEN 100 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~--~~~~d~~~~~~~~~~~~~~ 100 (194)
++..++|+|||+|.-+..+..++.+ ..+++++|+|.+.++.+.+++.....+ .++ -+.+|..+.+..+... ..
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p-~l~v~~l~gdy~~~l~~l~~~-~~ 153 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFS-HVRCAGLLGTYDDGLAWLKRP-EN 153 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCC-CeEEEEEEecHHHHHhhcccc-cc
Confidence 4558999999999988877776632 367999999999999999999844444 444 4889987765433210 00
Q ss_pred CCceeEEEEeCC------ccccHHHHHHHHh-cccCCeEEEE
Q 029414 101 EGSFDYAFVDAD------KDNYCNYHERLMK-LLKVGGIAVY 135 (194)
Q Consensus 101 ~~~fD~i~id~~------~~~~~~~~~~~~~-~L~~gG~lv~ 135 (194)
.....+++.-+. ......+++.+.+ .|+||+.+++
T Consensus 154 ~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 154 RSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred cCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 123566655442 4566788899988 9999988887
No 234
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.31 E-value=5.8e-06 Score=72.91 Aligned_cols=82 Identities=13% Similarity=0.191 Sum_probs=65.8
Q ss_pred CCCeEEEEcccccHHHHHHHhhC---CC--------------------------------------CCEEEEEeCCcchH
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTI---PE--------------------------------------DGQITAIDVNRETY 64 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~---~~--------------------------------------~~~v~~iD~~~~~~ 64 (194)
++..++|.+||+|...+..|... ++ ..+++++|+++.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 46789999999999998876531 11 23799999999999
Q ss_pred HhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCC
Q 029414 65 EIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 112 (194)
Q Consensus 65 ~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~ 112 (194)
+.|++|+..+++.+.+.+.++|+.+..... ..++||+|+.+++
T Consensus 270 ~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-----~~~~~d~IvtNPP 312 (702)
T PRK11783 270 QAARKNARRAGVAELITFEVKDVADLKNPL-----PKGPTGLVISNPP 312 (702)
T ss_pred HHHHHHHHHcCCCcceEEEeCChhhccccc-----ccCCCCEEEECCC
Confidence 999999999999888999999987753221 1257999999976
No 235
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.28 E-value=7.3e-07 Score=70.09 Aligned_cols=105 Identities=22% Similarity=0.258 Sum_probs=69.6
Q ss_pred CCCeEEEEcccccHHHHHHHhhCC-------CCCEEEEEeCCcchHHhHHHHH------------------HHc-----C
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIP-------EDGQITAIDVNRETYEIGLPII------------------KKA-----G 75 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~-------~~~~v~~iD~~~~~~~~a~~~~------------------~~~-----~ 75 (194)
++-+|+-.||.+|.-+..+|..+. .+.+|+++|+|+..++.|++.. ... +
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 346999999999975555444331 1357999999999999887652 110 0
Q ss_pred -------CCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEe
Q 029414 76 -------VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 76 -------~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
+-..|++.+.|..+. .+ ...+.||+|+|... .+.....++.+.+.|+|||+|++.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~--~~----~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAK--QW----AVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred eEEEChHHHccCEEEcccCCCC--CC----ccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 012344544444331 00 01368999998543 455678899999999999999884
No 236
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.25 E-value=2.1e-05 Score=63.62 Aligned_cols=104 Identities=17% Similarity=0.189 Sum_probs=81.2
Q ss_pred CCCeEEEEcccccHHHHHHHhhCC---C----------------------------CC-------EEEEEeCCcchHHhH
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIP---E----------------------------DG-------QITAIDVNRETYEIG 67 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~---~----------------------------~~-------~v~~iD~~~~~~~~a 67 (194)
+...++|--||+|...+..|...+ | .. .++|+|+++.+++.|
T Consensus 191 ~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~A 270 (381)
T COG0116 191 PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGA 270 (381)
T ss_pred CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHH
Confidence 445899999999999999877653 1 01 478999999999999
Q ss_pred HHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCc-----------cccHHHHHHHHhcccCCeEEEEe
Q 029414 68 LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----------DNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 68 ~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~-----------~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
+.|...+|+.+.|++.++|+..+.+. .+.+|+|+++++. .-|..+.+.+.+.++-.+..++.
T Consensus 271 k~NA~~AGv~d~I~f~~~d~~~l~~~-------~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~t 343 (381)
T COG0116 271 KANARAAGVGDLIEFKQADATDLKEP-------LEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFT 343 (381)
T ss_pred HHHHHhcCCCceEEEEEcchhhCCCC-------CCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 99999999999999999998665332 1589999999761 12445556666788877888874
No 237
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.23 E-value=9.7e-06 Score=57.29 Aligned_cols=74 Identities=19% Similarity=0.296 Sum_probs=56.1
Q ss_pred HHHHHHHHHH----cCCCeEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCcchHHhHHHHHHHcC--CCCcEEEEec
Q 029414 15 GQLMAMLLRL----VNAKKTIEIGVFTGYSLLLTALTI---PEDGQITAIDVNRETYEIGLPIIKKAG--VDHKINFIES 85 (194)
Q Consensus 15 ~~~l~~l~~~----~~~~~vLeiG~G~G~~~~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~--~~~~v~~~~~ 85 (194)
.+++..+... .+..+|+|+|||.|+.+..++..+ .++.+|+++|.++...+.+.++.+..+ ...+..+..+
T Consensus 10 ~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (141)
T PF13679_consen 10 AELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQG 89 (141)
T ss_pred HHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhcc
Confidence 3444555444 677899999999999999999822 137899999999999999999988777 4345666665
Q ss_pred chH
Q 029414 86 EAL 88 (194)
Q Consensus 86 d~~ 88 (194)
+..
T Consensus 90 ~~~ 92 (141)
T PF13679_consen 90 DIA 92 (141)
T ss_pred chh
Confidence 543
No 238
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=1.9e-05 Score=63.23 Aligned_cols=124 Identities=15% Similarity=0.178 Sum_probs=95.2
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414 6 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 85 (194)
Q Consensus 6 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 85 (194)
|.|..+++..-.+-.......+.+|+|.-+|+|.=++-+|...+ ..+++.-|++|++.+.+++|+..+... +..++..
T Consensus 32 P~m~~NRDlsV~~l~~~~~~~~~~v~DalsatGiRgIRya~E~~-~~~v~lNDisp~Avelik~Nv~~N~~~-~~~v~n~ 109 (380)
T COG1867 32 PAMEFNRDLSVLVLKAFGKLLPKRVLDALSATGIRGIRYAVETG-VVKVVLNDISPKAVELIKENVRLNSGE-DAEVINK 109 (380)
T ss_pred chhhhccchhHHHHHHhhccCCeEEeecccccchhHhhhhhhcC-ccEEEEccCCHHHHHHHHHHHHhcCcc-cceeecc
Confidence 45555555544433333222288999999999999999998876 448999999999999999999988433 5666668
Q ss_pred chHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414 86 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 138 (194)
Q Consensus 86 d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 138 (194)
|+...+.+. ...||+|=+|+. ..+..+++.+.+.++.||++.+..+
T Consensus 110 DAN~lm~~~------~~~fd~IDiDPF-GSPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 110 DANALLHEL------HRAFDVIDIDPF-GSPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred hHHHHHHhc------CCCccEEecCCC-CCCchHHHHHHHHhhcCCEEEEEec
Confidence 988877664 478999888864 3556789999999999999998544
No 239
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=98.23 E-value=5.2e-05 Score=55.46 Aligned_cols=126 Identities=21% Similarity=0.204 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCC---CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414 12 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP---EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 88 (194)
Q Consensus 12 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 88 (194)
+.--..+..++-..+|..|+|+|+-.|.+++++|..+- ...+|+++|++-..++.+... . +++.++.+++.
T Consensus 55 p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~-p~i~f~egss~ 128 (237)
T COG3510 55 PSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----V-PDILFIEGSST 128 (237)
T ss_pred HHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----C-CCeEEEeCCCC
Confidence 33344455666677899999999999999999987542 235899999876554433221 2 48999999875
Q ss_pred HH--HHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccCCeEEEEecccccccc
Q 029414 89 SV--LDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTV 144 (194)
Q Consensus 89 ~~--~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~ 144 (194)
+. ..+.... .+..+-=+++.|.+ .....+.++...++|..|-++++.|....++.
T Consensus 129 dpai~eqi~~~-~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp 187 (237)
T COG3510 129 DPAIAEQIRRL-KNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLP 187 (237)
T ss_pred CHHHHHHHHHH-hcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCC
Confidence 52 2222111 11123345556665 45667788888899999999999998877754
No 240
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=98.20 E-value=8.8e-06 Score=59.97 Aligned_cols=105 Identities=17% Similarity=0.168 Sum_probs=78.7
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCC------CCcEEEEecchHHHHHHHhhcCCC
Q 029414 27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV------DHKINFIESEALSVLDQLLKYSEN 100 (194)
Q Consensus 27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~------~~~v~~~~~d~~~~~~~~~~~~~~ 100 (194)
.-...|||||.|.....++..+| +..+.++|+-...-+..++++..... -.|+.+...++...++.++..
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fP-dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~k--- 136 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFP-DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEK--- 136 (249)
T ss_pred cceEEeeccCccchhhhccccCc-cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhh---
Confidence 34689999999999999999998 89999999999888999998877651 137889999999988887543
Q ss_pred CCceeEEEEeCC-c----------cccHHHHHHHHhcccCCeEEEEe
Q 029414 101 EGSFDYAFVDAD-K----------DNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 101 ~~~fD~i~id~~-~----------~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
++.+-.|+--+ + -.....+.+..-.|++||.++..
T Consensus 137 -gqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yti 182 (249)
T KOG3115|consen 137 -GQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTI 182 (249)
T ss_pred -cccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEE
Confidence 44433332211 1 11245566677889999998874
No 241
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.17 E-value=7.1e-05 Score=56.00 Aligned_cols=111 Identities=18% Similarity=0.184 Sum_probs=86.3
Q ss_pred HHHHHHHc-CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhh
Q 029414 18 MAMLLRLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK 96 (194)
Q Consensus 18 l~~l~~~~-~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 96 (194)
|..++... +..++.||||--++.+.++....+ ..++++.|+++..++.|.+++..+++.+++++..+|....+..
T Consensus 7 L~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~--- 82 (226)
T COG2384 7 LTTVANLVKQGARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL--- 82 (226)
T ss_pred HHHHHHHHHcCCceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc---
Confidence 44444433 345599999999999999999876 8899999999999999999999999999999999998665433
Q ss_pred cCCCCCceeEEEEeCCc-cccHHHHHHHHhcccCCeEEEEe
Q 029414 97 YSENEGSFDYAFVDADK-DNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 97 ~~~~~~~fD~i~id~~~-~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
+..+|.|.+.+.. .-....+++-...|+.--.+|+.
T Consensus 83 ----~d~~d~ivIAGMGG~lI~~ILee~~~~l~~~~rlILQ 119 (226)
T COG2384 83 ----EDEIDVIVIAGMGGTLIREILEEGKEKLKGVERLILQ 119 (226)
T ss_pred ----cCCcCEEEEeCCcHHHHHHHHHHhhhhhcCcceEEEC
Confidence 3579999998763 33456677777777644456663
No 242
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.15 E-value=8.2e-06 Score=63.48 Aligned_cols=103 Identities=18% Similarity=0.175 Sum_probs=67.8
Q ss_pred CCeEEEEcccccHHHHH----HHhhCCC----CCEEEEEeCCcchHHhHHHHHHH-----cCCC----------------
Q 029414 27 AKKTIEIGVFTGYSLLL----TALTIPE----DGQITAIDVNRETYEIGLPIIKK-----AGVD---------------- 77 (194)
Q Consensus 27 ~~~vLeiG~G~G~~~~~----la~~~~~----~~~v~~iD~~~~~~~~a~~~~~~-----~~~~---------------- 77 (194)
+-+|+-.||++|.-... +.+..+. ..+|+++|+|...++.|+.-+=. .+++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 67999999999964433 3344332 47899999999999888643211 1221
Q ss_pred -------CcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEe
Q 029414 78 -------HKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 78 -------~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
..|++...|..+..+ ..+.||+|||-.. .+.....++.....|+|||+|++-
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~-------~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSP-------FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEChHHhcccEEeecCCCCCcc-------ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 112333333222111 1467999998754 456678889999999999999994
No 243
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.10 E-value=2.5e-05 Score=62.25 Aligned_cols=97 Identities=12% Similarity=0.127 Sum_probs=75.5
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 029414 27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 106 (194)
Q Consensus 27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~ 106 (194)
-...+|+|.|.|..+..+...+| ++.+++.+...+..++.++. . .|+.+.+|..+.. ++-|+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-~----gV~~v~gdmfq~~----------P~~da 239 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-P----GVEHVAGDMFQDT----------PKGDA 239 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc-C----CcceecccccccC----------CCcCe
Confidence 37899999999999999998776 68889988888877777664 3 3677777765542 44579
Q ss_pred EEEeCC-----ccccHHHHHHHHhcccCCeEEEEeccccc
Q 029414 107 AFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLWG 141 (194)
Q Consensus 107 i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~ 141 (194)
||+-.. .++..+++++|++.|+|||.|++-+...+
T Consensus 240 I~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 240 IWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred EEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 987643 45678999999999999999988666433
No 244
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.10 E-value=0.0002 Score=54.45 Aligned_cols=101 Identities=23% Similarity=0.282 Sum_probs=63.5
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 105 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD 105 (194)
.+++||-+|=.--.+ +.+|.... ..+|+.+|++...++..++..++.+++ ++.++.|....+|.-. .++||
T Consensus 44 ~gk~il~lGDDDLtS-lA~al~~~-~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~-----~~~fD 114 (243)
T PF01861_consen 44 EGKRILFLGDDDLTS-LALALTGL-PKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEEL-----RGKFD 114 (243)
T ss_dssp TT-EEEEES-TT-HH-HHHHHHT---SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTT-----SS-BS
T ss_pred cCCEEEEEcCCcHHH-HHHHhhCC-CCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHH-----hcCCC
Confidence 578999999655443 44443333 579999999999999999999999985 9999999988777632 58999
Q ss_pred EEEEeCC--ccccHHHHHHHHhcccCCe-EEEE
Q 029414 106 YAFVDAD--KDNYCNYHERLMKLLKVGG-IAVY 135 (194)
Q Consensus 106 ~i~id~~--~~~~~~~~~~~~~~L~~gG-~lv~ 135 (194)
++|.|++ .+....++..+...||..| ..++
T Consensus 115 ~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~ 147 (243)
T PF01861_consen 115 VFFTDPPYTPEGLKLFLSRGIEALKGEGCAGYF 147 (243)
T ss_dssp EEEE---SSHHHHHHHHHHHHHTB-STT-EEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHhCCCCceEEE
Confidence 9999987 4566778889999998666 4444
No 245
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=2.6e-05 Score=55.49 Aligned_cols=119 Identities=18% Similarity=0.163 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHH---HcCCCeEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC--CcEEEEec
Q 029414 12 PDAGQLMAMLLR---LVNAKKTIEIGVFTGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD--HKINFIES 85 (194)
Q Consensus 12 ~~~~~~l~~l~~---~~~~~~vLeiG~G~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~v~~~~~ 85 (194)
|..+++-..+++ ..++.+|||+|.|.-. .++.+|...+ ...|...|-+.+.++..++....+... ..+.++.-
T Consensus 12 pseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~-~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw 90 (201)
T KOG3201|consen 12 PSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAP-DSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRW 90 (201)
T ss_pred ccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecC-CceEEEecCCHHHHHHHHHHHhcccccccceehhhHH
Confidence 333444444443 3357899999998644 5555666554 889999999999998888766544221 12222211
Q ss_pred chHHHHHHHhhcCCCCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEe
Q 029414 86 EALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 86 d~~~~~~~~~~~~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
+... .+... +...||.|++.-. .+...+..+.++.+|+|.|.-++-
T Consensus 91 ~~~~--aqsq~---eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~f 139 (201)
T KOG3201|consen 91 LIWG--AQSQQ---EQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLF 139 (201)
T ss_pred HHhh--hHHHH---hhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEe
Confidence 1111 11111 1358999986432 456677889999999999986553
No 246
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=4.4e-05 Score=56.37 Aligned_cols=102 Identities=20% Similarity=0.250 Sum_probs=76.6
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcCCCC
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENE 101 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~ 101 (194)
..++.+||=+|+.+|.....++.-.+ .+.++++|.++......-...++. +|+-.+.+|+... ...+ -
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P~~Y~~~------V 143 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKPEKYRHL------V 143 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCcHHhhhh------c
Confidence 34678999999999999999999887 899999999997665544444332 3788888887543 2222 3
Q ss_pred CceeEEEEeCCccccHHH-HHHHHhcccCCeEEEE
Q 029414 102 GSFDYAFVDADKDNYCNY-HERLMKLLKVGGIAVY 135 (194)
Q Consensus 102 ~~fD~i~id~~~~~~~~~-~~~~~~~L~~gG~lv~ 135 (194)
+..|+||.|...++..+. ...+...|++||.+++
T Consensus 144 e~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 144 EKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVI 178 (231)
T ss_pred ccccEEEEecCCchHHHHHHHHHHHhcccCCeEEE
Confidence 679999999886665554 4566789999996655
No 247
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.02 E-value=4.4e-05 Score=59.92 Aligned_cols=113 Identities=11% Similarity=0.112 Sum_probs=69.0
Q ss_pred HHHHHHHHH---HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHH
Q 029414 15 GQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 91 (194)
Q Consensus 15 ~~~l~~l~~---~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 91 (194)
..+|..+.. ..+|.+|||+|+|.|..+......++.-.+++++|.++.+.+.++..++......... ...+ ..
T Consensus 19 ~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~-~~~~---~~ 94 (274)
T PF09243_consen 19 YRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAE-WRRV---LY 94 (274)
T ss_pred HHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccch-hhhh---hh
Confidence 344444443 2368899999999998777666666645689999999999999998776543211111 1111 11
Q ss_pred HHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEe
Q 029414 92 DQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 92 ~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
.... .....|+|++... ......+++.+++.+.+ -+|+++
T Consensus 95 ~~~~----~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~-~LVlVE 139 (274)
T PF09243_consen 95 RDFL----PFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP-VLVLVE 139 (274)
T ss_pred cccc----cCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC-cEEEEc
Confidence 1110 1234599987643 23455667777777765 344443
No 248
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.02 E-value=1.4e-05 Score=62.89 Aligned_cols=80 Identities=15% Similarity=0.304 Sum_probs=49.0
Q ss_pred CeEEEEcccccHH-HHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc-CCCCcEEEEecchHH-HHHHHhhcCCCCCce
Q 029414 28 KKTIEIGVFTGYS-LLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEALS-VLDQLLKYSENEGSF 104 (194)
Q Consensus 28 ~~vLeiG~G~G~~-~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~-~~~~~~~~~~~~~~f 104 (194)
-++||||||.... .+.-++. . +-+++++|+++..++.|+++++.+ ++.++|+++...... ++..+.. ..+.|
T Consensus 104 v~glDIGTGAscIYpLLg~~~-~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~---~~e~~ 178 (299)
T PF05971_consen 104 VRGLDIGTGASCIYPLLGAKL-Y-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQ---PNERF 178 (299)
T ss_dssp -EEEEES-TTTTHHHHHHHHH-H---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT-----S-E
T ss_pred eEeecCCccHHHHHHHHhhhh-c-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhc---cccee
Confidence 4799999987643 3333333 2 789999999999999999999999 898999997654322 3332221 24689
Q ss_pred eEEEEeCC
Q 029414 105 DYAFVDAD 112 (194)
Q Consensus 105 D~i~id~~ 112 (194)
|+..|.++
T Consensus 179 dftmCNPP 186 (299)
T PF05971_consen 179 DFTMCNPP 186 (299)
T ss_dssp EEEEE---
T ss_pred eEEecCCc
Confidence 99999876
No 249
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.00 E-value=3.8e-06 Score=69.68 Aligned_cols=98 Identities=13% Similarity=0.074 Sum_probs=58.5
Q ss_pred CeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHH-HcCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 029414 28 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK-KAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 106 (194)
Q Consensus 28 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~ 106 (194)
..+||+|||.|.++.+|... +....++-.. ....++..|. +.|++.-+.++ +..-++-. .+.||+
T Consensus 119 R~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~--d~~~~qvqfaleRGvpa~~~~~---~s~rLPfp------~~~fDm 184 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER---NVTTMSFAPN--DEHEAQVQFALERGVPAMIGVL---GSQRLPFP------SNAFDM 184 (506)
T ss_pred EEEEeccceeehhHHHHhhC---CceEEEcccc--cCCchhhhhhhhcCcchhhhhh---ccccccCC------ccchhh
Confidence 47999999999999999874 3344444332 2222233332 24554332222 11222222 578999
Q ss_pred EEEeCC----ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414 107 AFVDAD----KDNYCNYHERLMKLLKVGGIAVYDNTL 139 (194)
Q Consensus 107 i~id~~----~~~~~~~~~~~~~~L~~gG~lv~~~~~ 139 (194)
|+|... .....-++-++-|.|+|||+++.+...
T Consensus 185 vHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 185 VHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred hhcccccccchhcccceeehhhhhhccCceEEecCCc
Confidence 988754 222233566677999999999997654
No 250
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.00 E-value=0.00011 Score=57.53 Aligned_cols=85 Identities=14% Similarity=0.165 Sum_probs=70.6
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 103 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 103 (194)
..+....+|..-|.|..+..++..+++.++++++|.+|++++.|++.+..++ ++++++++++.+....+... ..++
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~--~i~~ 96 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKEL--GIGK 96 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhc--CCCc
Confidence 3355799999999999999999999878899999999999999999998776 59999999987765554322 1358
Q ss_pred eeEEEEeCC
Q 029414 104 FDYAFVDAD 112 (194)
Q Consensus 104 fD~i~id~~ 112 (194)
+|-|++|-.
T Consensus 97 vDGiL~DLG 105 (314)
T COG0275 97 VDGILLDLG 105 (314)
T ss_pred eeEEEEecc
Confidence 999998854
No 251
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.91 E-value=3e-05 Score=59.32 Aligned_cols=96 Identities=15% Similarity=0.172 Sum_probs=69.1
Q ss_pred HHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHH
Q 029414 15 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL 94 (194)
Q Consensus 15 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 94 (194)
-.++..+-...+...|-|+|||-+..+. . ....|+++|+-+ .+-+++.+|...+ |-
T Consensus 169 d~ii~~ik~r~~~~vIaD~GCGEakiA~----~--~~~kV~SfDL~a----------------~~~~V~~cDm~~v-Pl- 224 (325)
T KOG3045|consen 169 DVIIRKIKRRPKNIVIADFGCGEAKIAS----S--ERHKVHSFDLVA----------------VNERVIACDMRNV-PL- 224 (325)
T ss_pred HHHHHHHHhCcCceEEEecccchhhhhh----c--cccceeeeeeec----------------CCCceeeccccCC-cC-
Confidence 3455555555566789999999987755 2 245799999853 1445566665553 21
Q ss_pred hhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414 95 LKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTL 139 (194)
Q Consensus 95 ~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~ 139 (194)
++++.|++++.-. ..+...+++++.+.|++||.+.+..+.
T Consensus 225 -----~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 225 -----EDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred -----ccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehh
Confidence 2588998876544 678999999999999999999997764
No 252
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.86 E-value=6.5e-05 Score=59.55 Aligned_cols=85 Identities=18% Similarity=0.165 Sum_probs=61.3
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 103 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 103 (194)
..++..++|...|.|..+..++..++ +++++++|.|+++++.+++++... .+++.++++++.++...+... ....+
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~-~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~-~~~~~ 93 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLP-NGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKEL-NGINK 93 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-T-T-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHT-TTTS-
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCC-CCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHc-cCCCc
Confidence 44667999999999999999999998 599999999999999999887655 469999999987765444321 12368
Q ss_pred eeEEEEeCC
Q 029414 104 FDYAFVDAD 112 (194)
Q Consensus 104 fD~i~id~~ 112 (194)
+|-|++|-.
T Consensus 94 ~dgiL~DLG 102 (310)
T PF01795_consen 94 VDGILFDLG 102 (310)
T ss_dssp EEEEEEE-S
T ss_pred cCEEEEccc
Confidence 999999965
No 253
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.85 E-value=0.00015 Score=58.10 Aligned_cols=87 Identities=11% Similarity=0.149 Sum_probs=61.0
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414 25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f 104 (194)
.++.++||+||++|.+|..+++. +.+|++||..+- . ..+. . +++|+.+.+|.....+. .+.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~l-~----~~L~--~-~~~V~h~~~d~fr~~p~-------~~~v 271 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGPM-A----QSLM--D-TGQVEHLRADGFKFRPP-------RKNV 271 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechhc-C----Hhhh--C-CCCEEEEeccCcccCCC-------CCCC
Confidence 36789999999999999999986 569999996651 1 1222 1 35899999998776443 3689
Q ss_pred eEEEEeCCccccHHHHHHHHhcccCC
Q 029414 105 DYAFVDADKDNYCNYHERLMKLLKVG 130 (194)
Q Consensus 105 D~i~id~~~~~~~~~~~~~~~~L~~g 130 (194)
|++++|... .+....+.+.+-|..|
T Consensus 272 DwvVcDmve-~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 272 DWLVCDMVE-KPARVAELMAQWLVNG 296 (357)
T ss_pred CEEEEeccc-CHHHHHHHHHHHHhcC
Confidence 999999752 2234445555555544
No 254
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.81 E-value=5.2e-05 Score=55.69 Aligned_cols=97 Identities=18% Similarity=0.183 Sum_probs=69.0
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 103 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 103 (194)
..++++|||+|+|+|..++.-++.. ...|++.|++|.....++-|.+.+++ .+.+...|... . ++.
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g---~-------~~~ 142 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG---S-------PPA 142 (218)
T ss_pred ccccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC---C-------Ccc
Confidence 4468999999999999888877763 36799999999888888888888885 57777766533 1 478
Q ss_pred eeEEEEeCC---ccccHHHHHHHHhcccCCeEEEE
Q 029414 104 FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 104 fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
||+++..-. +......+. +...++..|..|+
T Consensus 143 ~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 143 FDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred eeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEE
Confidence 999987533 334444555 4444544444443
No 255
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=0.00048 Score=52.26 Aligned_cols=113 Identities=19% Similarity=0.123 Sum_probs=77.7
Q ss_pred CCHHHHHHHHHHHH---HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe-c
Q 029414 10 TAPDAGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-S 85 (194)
Q Consensus 10 ~~~~~~~~l~~l~~---~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-~ 85 (194)
+++....+...+-. ..+++.+||+|+.||.+|..+.+.. ..+|+++|.....+.. .+ ..++++..+. .
T Consensus 60 VSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~---kL---R~d~rV~~~E~t 131 (245)
T COG1189 60 VSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHW---KL---RNDPRVIVLERT 131 (245)
T ss_pred cccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCH---hH---hcCCcEEEEecC
Confidence 44444444444433 3367899999999999999999863 4699999997654432 11 1234666554 3
Q ss_pred chHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414 86 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 86 d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
|+....+.-. .+..|++++|...-.....+..+..++++++.++.
T Consensus 132 N~r~l~~~~~-----~~~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 132 NVRYLTPEDF-----TEKPDLIVIDVSFISLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred ChhhCCHHHc-----ccCCCeEEEEeehhhHHHHHHHHHHhcCCCceEEE
Confidence 4443323221 35789999998877777888999999999988876
No 256
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=2.9e-05 Score=64.32 Aligned_cols=115 Identities=19% Similarity=0.169 Sum_probs=93.7
Q ss_pred HHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCC
Q 029414 20 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE 99 (194)
Q Consensus 20 ~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 99 (194)
...+..++-+|||.-+++|.-++..|..++.-.++++-|.++..++..+++++.++..+.++..++|+.-..-....
T Consensus 103 ~~~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~--- 179 (525)
T KOG1253|consen 103 LLKREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPM--- 179 (525)
T ss_pred hhhhccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccc---
Confidence 34445567899999999999999999999855789999999999999999999998888888999998765433210
Q ss_pred CCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414 100 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 138 (194)
Q Consensus 100 ~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 138 (194)
....||+|-+|+. .....|++.+.+.++.||++.+..+
T Consensus 180 ~~~~FDvIDLDPy-Gs~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 180 VAKFFDVIDLDPY-GSPSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred cccccceEecCCC-CCccHHHHHHHHHhhcCCEEEEEec
Confidence 1368999999974 3445789999999999999998543
No 257
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.74 E-value=0.00042 Score=61.06 Aligned_cols=104 Identities=20% Similarity=0.126 Sum_probs=71.1
Q ss_pred CCeEEEEcccccHHHHHHHhhC-------CC----CCEEEEEeCCcchHHhH--------------HHHHHHc-----CC
Q 029414 27 AKKTIEIGVFTGYSLLLTALTI-------PE----DGQITAIDVNRETYEIG--------------LPIIKKA-----GV 76 (194)
Q Consensus 27 ~~~vLeiG~G~G~~~~~la~~~-------~~----~~~v~~iD~~~~~~~~a--------------~~~~~~~-----~~ 76 (194)
.-+|+|+|-|+|.+.+...+.. ++ .-+++++|..|-..+.. ++..+.+ ++
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 3589999999999877766444 11 24789999866332222 2222111 11
Q ss_pred ------CC--cEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCcc-----c-cHHHHHHHHhcccCCeEEEEe
Q 029414 77 ------DH--KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----N-YCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 77 ------~~--~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~-----~-~~~~~~~~~~~L~~gG~lv~~ 136 (194)
.+ +++++.||+.+.++++ ...+|++|.|+..+ - ..++|+.+.++++|||.++..
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~------~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQL------DARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhc------cccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 11 3457889999988876 35699999997522 1 367889999999999999864
No 258
>PHA01634 hypothetical protein
Probab=97.70 E-value=0.00012 Score=50.03 Aligned_cols=74 Identities=11% Similarity=0.008 Sum_probs=55.2
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 105 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD 105 (194)
+.++|+|||++.|.++++|+... ..+|+++|.++...+..+++++.+..-+...-.. .+.. +-+.||
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G--AK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~--------eW~~---~Y~~~D 94 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG--ASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG--------EWNG---EYEDVD 94 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC--ccEEEEeccCHHHHHHHHHHhhhheeeeceeecc--------cccc---cCCCcc
Confidence 67999999999999999999863 3689999999999999999887654322221111 1211 147899
Q ss_pred EEEEeCC
Q 029414 106 YAFVDAD 112 (194)
Q Consensus 106 ~i~id~~ 112 (194)
...+|+.
T Consensus 95 i~~iDCe 101 (156)
T PHA01634 95 IFVMDCE 101 (156)
T ss_pred eEEEEcc
Confidence 9999976
No 259
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.69 E-value=9.5e-05 Score=61.33 Aligned_cols=115 Identities=17% Similarity=0.190 Sum_probs=87.7
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 105 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD 105 (194)
.+..+|-+|-|.|....++-..++ ..+++++|++|++++.++.+|.-..-. +.++...|..+.+.+......+...||
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p-~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k~~~~~~~~d 372 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLP-KFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQRTAKSQQEDICPD 372 (482)
T ss_pred ccCcEEEEecCCCccccceeeecC-ccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHHHHHHhhccccccCCc
Confidence 345789999999999999888887 789999999999999999999544322 566777888888777655333456899
Q ss_pred EEEEeCCcc------------ccHHHHHHHHhcccCCeEEEEecccccc
Q 029414 106 YAFVDADKD------------NYCNYHERLMKLLKVGGIAVYDNTLWGG 142 (194)
Q Consensus 106 ~i~id~~~~------------~~~~~~~~~~~~L~~gG~lv~~~~~~~g 142 (194)
++++|-+.. -...++..+...|.|.|+++++-+.+..
T Consensus 373 vl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~ 421 (482)
T KOG2352|consen 373 VLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNS 421 (482)
T ss_pred EEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCc
Confidence 999985411 1245566777899999999998665433
No 260
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.65 E-value=3.6e-05 Score=58.52 Aligned_cols=75 Identities=20% Similarity=0.255 Sum_probs=48.8
Q ss_pred eEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc---C-C----CCcEEEEecchHHHHHHHhhcCCC
Q 029414 29 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA---G-V----DHKINFIESEALSVLDQLLKYSEN 100 (194)
Q Consensus 29 ~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~---~-~----~~~v~~~~~d~~~~~~~~~~~~~~ 100 (194)
+|||..+|.|..+..+|.. +++|+++|.+|-.....+.-++.+ . . ..+++++++|+.+.+...
T Consensus 78 ~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~------ 148 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQP------ 148 (234)
T ss_dssp -EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCH------
T ss_pred EEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhc------
Confidence 8999999999999999865 579999999997766555444322 1 1 137999999999887632
Q ss_pred CCceeEEEEeCC
Q 029414 101 EGSFDYAFVDAD 112 (194)
Q Consensus 101 ~~~fD~i~id~~ 112 (194)
..+||+||+|+.
T Consensus 149 ~~s~DVVY~DPM 160 (234)
T PF04445_consen 149 DNSFDVVYFDPM 160 (234)
T ss_dssp SS--SEEEE--S
T ss_pred CCCCCEEEECCC
Confidence 578999999975
No 261
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=0.00053 Score=55.13 Aligned_cols=118 Identities=19% Similarity=0.219 Sum_probs=80.2
Q ss_pred HHHcCCCeEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHh-hc
Q 029414 22 LRLVNAKKTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL-KY 97 (194)
Q Consensus 22 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~ 97 (194)
+...++++|||..+..|.-|+.+.+...+ .+.+++=|.++..+...+.......- +++.+...++..+-.... ..
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceeccccccccC
Confidence 34557889999999999999888777642 35899999999999888888854443 355555555433211110 00
Q ss_pred -CCCCCceeEEEEeCCc--------------c------------ccHHHHHHHHhcccCCeEEEEecccc
Q 029414 98 -SENEGSFDYAFVDADK--------------D------------NYCNYHERLMKLLKVGGIAVYDNTLW 140 (194)
Q Consensus 98 -~~~~~~fD~i~id~~~--------------~------------~~~~~~~~~~~~L~~gG~lv~~~~~~ 140 (194)
+.+...||-|++|.+. . -....+....++||+||.+|.+.+..
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 0123589999999530 0 11345677789999999999987653
No 262
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.56 E-value=0.001 Score=46.27 Aligned_cols=105 Identities=20% Similarity=0.211 Sum_probs=66.9
Q ss_pred EEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC-CceeEEE
Q 029414 30 TIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE-GSFDYAF 108 (194)
Q Consensus 30 vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~-~~fD~i~ 108 (194)
++|+|||+|..+ .++........++++|.++.++..++..... .....+.+..++.......+ .. ..||++.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~d~~~ 124 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPF-----EDSASFDLVI 124 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCC-----CCCCceeEEe
Confidence 999999999987 4444333124889999999988885554433 21111567776655420111 12 3799993
Q ss_pred EeCCc--cccHHHHHHHHhcccCCeEEEEeccccc
Q 029414 109 VDADK--DNYCNYHERLMKLLKVGGIAVYDNTLWG 141 (194)
Q Consensus 109 id~~~--~~~~~~~~~~~~~L~~gG~lv~~~~~~~ 141 (194)
..... ......+..+.+.++|+|.+++......
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 125 SLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred eeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 33221 1146788899999999999998765543
No 263
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.51 E-value=0.0013 Score=51.03 Aligned_cols=126 Identities=10% Similarity=0.131 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHH----cCCCeEEEEccccc--HHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414 13 DAGQLMAMLLRL----VNAKKTIEIGVFTG--YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 86 (194)
Q Consensus 13 ~~~~~l~~l~~~----~~~~~vLeiG~G~G--~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d 86 (194)
....+|...++. ..-...||||||.- .++-.+|+...++.+|+.+|.+|-.+..++..+..... .+..++++|
T Consensus 51 ~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD 129 (267)
T PF04672_consen 51 ANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQAD 129 (267)
T ss_dssp HHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--
T ss_pred HHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCC
Confidence 334455544443 24468999999965 36677877777799999999999999999998875542 248899999
Q ss_pred hHHHHHHHh---hc--CCCCCceeEEEEeC-----CccccHHHHHHHHhcccCCeEEEEeccc
Q 029414 87 ALSVLDQLL---KY--SENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTL 139 (194)
Q Consensus 87 ~~~~~~~~~---~~--~~~~~~fD~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 139 (194)
..+.-.-+. .. -+-..+.-++++.. +..+....+..+...|.||++|++.-..
T Consensus 130 ~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 130 LRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred CCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 766422221 10 01223444444432 2356778899999999999999996543
No 264
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.49 E-value=0.00013 Score=59.24 Aligned_cols=105 Identities=18% Similarity=0.210 Sum_probs=79.9
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414 25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f 104 (194)
.++..++++|||.|....+++.- ...++++++.++..+.++........+.++..++.+|..... .++..|
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~-------fedn~f 179 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP-------FEDNTF 179 (364)
T ss_pred cccccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC-------CCcccc
Confidence 34557999999999999999875 368899999999888888777777776655555555554431 235789
Q ss_pred eEEEE-eCC--ccccHHHHHHHHhcccCCeEEEEecc
Q 029414 105 DYAFV-DAD--KDNYCNYHERLMKLLKVGGIAVYDNT 138 (194)
Q Consensus 105 D~i~i-d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~ 138 (194)
|.+.+ +.. .++....++++++.++|||+.+..+.
T Consensus 180 d~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 180 DGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred CcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHH
Confidence 99864 332 56778899999999999999998553
No 265
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.48 E-value=0.00024 Score=52.25 Aligned_cols=108 Identities=13% Similarity=0.102 Sum_probs=65.2
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchH------HhHHHHHHHcCCCCcEEEEecchHHHHHHHhhc
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY------EIGLPIIKKAGVDHKINFIESEALSVLDQLLKY 97 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~------~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 97 (194)
+.++.+|+|+-.|.|++|..|+..+.+.+.|+++-...... ...+....+.... |++.+-.+..... .
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~a-N~e~~~~~~~A~~-~---- 119 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYA-NVEVIGKPLVALG-A---- 119 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhh-hhhhhCCcccccC-C----
Confidence 34567999999999999999999998889998876544311 1111111112222 3333332221111 0
Q ss_pred CCCCCceeEEEEeCC----------ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414 98 SENEGSFDYAFVDAD----------KDNYCNYHERLMKLLKVGGIAVYDNTLW 140 (194)
Q Consensus 98 ~~~~~~fD~i~id~~----------~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 140 (194)
.+..|+++-... ......+...+.+.|||||++++.|..-
T Consensus 120 ---pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a 169 (238)
T COG4798 120 ---PQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRA 169 (238)
T ss_pred ---CCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 234555543211 2334567788899999999999977543
No 266
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=97.47 E-value=0.0014 Score=49.92 Aligned_cols=102 Identities=17% Similarity=0.191 Sum_probs=73.8
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcch----HHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCC
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRET----YEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE 99 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~----~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 99 (194)
..++.+||-+|+++|.+....+.-+.+.+-|+++|.++.. +..|+++ .|+-.+..|+.........
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-------tNiiPIiEDArhP~KYRml--- 223 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-------TNIIPIIEDARHPAKYRML--- 223 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc-------CCceeeeccCCCchheeee---
Confidence 4467899999999999999999999889999999998753 3333332 3677777777553222110
Q ss_pred CCCceeEEEEeCCccccHHHH-HHHHhcccCCeEEEEe
Q 029414 100 NEGSFDYAFVDADKDNYCNYH-ERLMKLLKVGGIAVYD 136 (194)
Q Consensus 100 ~~~~fD~i~id~~~~~~~~~~-~~~~~~L~~gG~lv~~ 136 (194)
-+-.|+||.|...++....+ -.+...||+||.+++.
T Consensus 224 -VgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 224 -VGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred -eeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEE
Confidence 24689999998866654443 3455789999999884
No 267
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.43 E-value=0.001 Score=51.85 Aligned_cols=108 Identities=20% Similarity=0.182 Sum_probs=70.9
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHH----------------------------c----
Q 029414 27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK----------------------------A---- 74 (194)
Q Consensus 27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~----------------------------~---- 74 (194)
..+||--|||.|..+..+|.. +-.+.+.|.|--++-..+=.+.. .
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 468999999999999999986 56899999877654322211110 0
Q ss_pred -------CCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE----EeCCccccHHHHHHHHhcccCCeEEEEecccccc
Q 029414 75 -------GVDHKINFIESEALSVLDQLLKYSENEGSFDYAF----VDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGG 142 (194)
Q Consensus 75 -------~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~----id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 142 (194)
..+.++....||+.+....- ...++||.|+ +|- .++..++++.+.++|||||+-|=-..+..+
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~----~~~~~~d~VvT~FFIDT-A~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh 207 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPD----ENKGSFDVVVTCFFIDT-AENIIEYIETIEHLLKPGGYWINFGPLLYH 207 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCc----ccCCcccEEEEEEEeec-hHHHHHHHHHHHHHhccCCEEEecCCcccc
Confidence 01134556666666653321 0136899884 443 567889999999999999965544444444
No 268
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.37 E-value=0.0079 Score=46.22 Aligned_cols=140 Identities=15% Similarity=0.096 Sum_probs=81.8
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 105 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD 105 (194)
.+.+|+|||||.--.++.+.... ++..++++|++...++.....+...+.+ .++...|.....+ ....|
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~~--------~~~~D 173 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDPP--------KEPAD 173 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSHT--------TSEES
T ss_pred CCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccCC--------CCCcc
Confidence 47899999999887777665443 3789999999999999999999988865 4555555544322 36799
Q ss_pred EEEEeCCc-----cccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEEEe
Q 029414 106 YAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSH 180 (194)
Q Consensus 106 ~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 180 (194)
+.++---. ......++ +...++.. .++++... .....+.++ +.....++.+.......+....
T Consensus 174 laLllK~lp~le~q~~g~g~~-ll~~~~~~-~~vVSfPt---------rSL~gR~~g-m~~~y~~~fe~~~~~~~~~~~~ 241 (251)
T PF07091_consen 174 LALLLKTLPCLERQRRGAGLE-LLDALRSP-HVVVSFPT---------RSLGGRNKG-MEQTYSAWFEALAAERGWIVDR 241 (251)
T ss_dssp EEEEET-HHHHHHHSTTHHHH-HHHHSCES-EEEEEEES----------------TT-HHHCHHHHHHHHCCTTCEEEEE
T ss_pred hhhHHHHHHHHHHHhcchHHH-HHHHhCCC-eEEEeccc---------cccccCccc-cccCHHHHHHHhcccCCceeee
Confidence 99876431 11112222 22344432 33333222 112233344 5555666777777777788887
Q ss_pred eecCCeeE
Q 029414 181 VALGDGIT 188 (194)
Q Consensus 181 ~p~~~G~~ 188 (194)
+-+++-+.
T Consensus 242 ~~~~~Elv 249 (251)
T PF07091_consen 242 LTFGNELV 249 (251)
T ss_dssp EEETTEEE
T ss_pred eeccccee
Confidence 77777653
No 269
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.26 E-value=0.00026 Score=53.45 Aligned_cols=98 Identities=12% Similarity=0.096 Sum_probs=70.5
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 029414 27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 106 (194)
Q Consensus 27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~ 106 (194)
-..++||||+.|.....+.... -.+++-+|.+..+++.++..- ..++ .+..+.+|- ++++ + +.+++|+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~q-dp~i--~~~~~v~DE-E~Ld-f-----~ens~DL 140 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQ-DPSI--ETSYFVGDE-EFLD-F-----KENSVDL 140 (325)
T ss_pred CcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccC-CCce--EEEEEecch-hccc-c-----cccchhh
Confidence 3579999999999998886542 468999999999998776532 1111 244555663 4443 2 2579999
Q ss_pred EEEeC---CccccHHHHHHHHhcccCCeEEEEe
Q 029414 107 AFVDA---DKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 107 i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
|+..- +.-+.+..+..|...|||+|.++..
T Consensus 141 iisSlslHW~NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 141 IISSLSLHWTNDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhhhhhhhhccCchHHHHHHHhcCCCccchhH
Confidence 98653 3456667788999999999999874
No 270
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.26 E-value=0.0015 Score=47.92 Aligned_cols=103 Identities=15% Similarity=0.226 Sum_probs=66.1
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec-chHH--HHHHHhhcCCCC
Q 029414 25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALS--VLDQLLKYSENE 101 (194)
Q Consensus 25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~--~~~~~~~~~~~~ 101 (194)
.++.+|||+|+..|.++--.-+...+++-|.++|+-. +. . ++.++++.+ |..+ ....+.+. ..+
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~--p-~~Ga~~i~~~dvtdp~~~~ki~e~-lp~ 134 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IE--P-PEGATIIQGNDVTDPETYRKIFEA-LPN 134 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------cc--C-CCCcccccccccCCHHHHHHHHHh-CCC
Confidence 3578999999999999998888886799999999854 11 1 234555555 3222 11111111 014
Q ss_pred CceeEEEEeCC-------ccccHH-------HHHHHHhcccCCeEEEEecccccc
Q 029414 102 GSFDYAFVDAD-------KDNYCN-------YHERLMKLLKVGGIAVYDNTLWGG 142 (194)
Q Consensus 102 ~~fD~i~id~~-------~~~~~~-------~~~~~~~~L~~gG~lv~~~~~~~g 142 (194)
.+.|+|+.|.. ..+... ++-.+...++|+|.+++- +|.|
T Consensus 135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK--~w~g 187 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK--LWDG 187 (232)
T ss_pred CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE--EecC
Confidence 68999998853 112222 333345788999999995 5666
No 271
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.25 E-value=3.6e-05 Score=57.04 Aligned_cols=98 Identities=13% Similarity=0.043 Sum_probs=67.0
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 105 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD 105 (194)
.++++||+|+|.|..+..++..+. +|++.|.|..+..+.++. + .+++. ..+.... +-+||
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~kk----~----ynVl~--~~ew~~t-------~~k~d 171 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKKK----N----YNVLT--EIEWLQT-------DVKLD 171 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhhc----C----Cceee--ehhhhhc-------Cceee
Confidence 368999999999999999987654 788889888777765543 2 22221 1233222 34789
Q ss_pred EEEEeCC---ccccHHHHHHHHhcccC-CeEEEEeccccccc
Q 029414 106 YAFVDAD---KDNYCNYHERLMKLLKV-GGIAVYDNTLWGGT 143 (194)
Q Consensus 106 ~i~id~~---~~~~~~~~~~~~~~L~~-gG~lv~~~~~~~g~ 143 (194)
+|.|-.. .-+....++.++..|+| +|.+|+.-++..-+
T Consensus 172 li~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVLP~~h 213 (288)
T KOG3987|consen 172 LILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMH 213 (288)
T ss_pred hHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEecccc
Confidence 8864321 33556788999999998 89888866554433
No 272
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.21 E-value=0.00055 Score=53.03 Aligned_cols=113 Identities=18% Similarity=0.111 Sum_probs=64.4
Q ss_pred CCCeEEEEcccccHH-HHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCc-------------------------
Q 029414 26 NAKKTIEIGVFTGYS-LLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK------------------------- 79 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~-~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~------------------------- 79 (194)
++.++||||||.-.. .+.+... -..|+..|..+...+..++.++..+.-+.
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~---f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEW---FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGT---EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHh---hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 456899999997543 2233333 24899999999888877777654321110
Q ss_pred --EE-EEecchHHHHHHHhhcCCCCCceeEEEEeCC-------ccccHHHHHHHHhcccCCeEEEEecccccc
Q 029414 80 --IN-FIESEALSVLDQLLKYSENEGSFDYAFVDAD-------KDNYCNYHERLMKLLKVGGIAVYDNTLWGG 142 (194)
Q Consensus 80 --v~-~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~-------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 142 (194)
|+ ++.+|..+.-+ +.......++||+|+.-.. ...+...++.+.++|||||.|++..++...
T Consensus 133 ~~Vk~Vv~cDV~~~~p-l~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t 204 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNP-LDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGST 204 (256)
T ss_dssp HHEEEEEE--TTSSST-TTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-S
T ss_pred HhhceEEEeeccCCCC-CCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCce
Confidence 21 33333322100 0000001135999876532 566788899999999999999997766543
No 273
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.18 E-value=0.00083 Score=53.57 Aligned_cols=120 Identities=16% Similarity=0.076 Sum_probs=88.5
Q ss_pred cCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHH-------hHHHHHHHcCCC-C
Q 029414 7 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYE-------IGLPIIKKAGVD-H 78 (194)
Q Consensus 7 ~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~-------~a~~~~~~~~~~-~ 78 (194)
-.+..++..-++..++...+++.|.|--.|||.....-|.- ++.|++.|++-.++. ..+.||++.+.. .
T Consensus 189 nTSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~ 265 (421)
T KOG2671|consen 189 NTSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQ 265 (421)
T ss_pred CcccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcch
Confidence 34566777788888888889999999999999987777764 679999999876654 568999999865 3
Q ss_pred cEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCc------------------------------------cccHHHHHH
Q 029414 79 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADK------------------------------------DNYCNYHER 122 (194)
Q Consensus 79 ~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~------------------------------------~~~~~~~~~ 122 (194)
-+.++.+|...- .+.. ...||.|+||++. .-..+.+.-
T Consensus 266 fldvl~~D~sn~--~~rs----n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~f 339 (421)
T KOG2671|consen 266 FLDVLTADFSNP--PLRS----NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCF 339 (421)
T ss_pred hhheeeecccCc--chhh----cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHh
Confidence 456777776542 1211 3689999999640 001234555
Q ss_pred HHhcccCCeEEEE
Q 029414 123 LMKLLKVGGIAVY 135 (194)
Q Consensus 123 ~~~~L~~gG~lv~ 135 (194)
..+.|..||.+++
T Consensus 340 ss~~L~~ggrlv~ 352 (421)
T KOG2671|consen 340 SSRRLVDGGRLVF 352 (421)
T ss_pred hHhhhhcCceEEE
Confidence 6689999999998
No 274
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=97.18 E-value=0.0035 Score=51.02 Aligned_cols=102 Identities=13% Similarity=0.086 Sum_probs=69.5
Q ss_pred CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec-chHHHHHHHhhcCCCCCc
Q 029414 26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEGS 103 (194)
Q Consensus 26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~~~~ 103 (194)
++.+|+-+|+|. |..+..+|+..+ ..+|+.+|.+++.++.|++..... .+..... +......... ....
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g~~----~~~~~~~~~~~~~~~~~t----~g~g 238 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGGAD----VVVNPSEDDAGAEILELT----GGRG 238 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCCCe----EeecCccccHHHHHHHHh----CCCC
Confidence 344899999996 777777888776 689999999999999998865211 1111111 2222222221 1236
Q ss_pred eeEEEEeCCccccHHHHHHHHhcccCCeEEEEeccc
Q 029414 104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 139 (194)
Q Consensus 104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 139 (194)
+|++|-... ....++.+.+.++++|.+++-.+.
T Consensus 239 ~D~vie~~G---~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 239 ADVVIEAVG---SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CCEEEECCC---CHHHHHHHHHHhcCCCEEEEEecc
Confidence 998886543 455788999999999999986544
No 275
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=97.08 E-value=0.067 Score=41.09 Aligned_cols=140 Identities=12% Similarity=0.117 Sum_probs=96.4
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414 6 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 85 (194)
Q Consensus 6 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 85 (194)
...........++..+-..+.+.+ |..-+|+-..+..+.+. ..++..+|..|+-....+++|. -..++++..+
T Consensus 69 ~a~~lpa~l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR~---qDRl~l~ELHp~D~~~L~~~f~---~d~~vrv~~~ 141 (279)
T COG2961 69 QAADLPAELEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLRE---QDRLVLTELHPSDAPLLRNNFA---GDRRVRVLRG 141 (279)
T ss_pred hcCCchHHHHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcch---hceeeeeecCccHHHHHHHHhC---CCcceEEEec
Confidence 334455566677777777766555 88888887777777764 5699999999999999999986 2358999999
Q ss_pred chHHHHHHHhhcCCCCCceeEEEEeCC---ccccHHHHHHHHhccc--CCeEEEEecccccccccCCCCCCCCCcccchH
Q 029414 86 EALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLK--VGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSR 160 (194)
Q Consensus 86 d~~~~~~~~~~~~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~--~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~ 160 (194)
|....+....+. .+.--+|+||.+ +.++....+.+.+.++ ++|+..+ |.-. . ..
T Consensus 142 DG~~~l~a~LPP---~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yai----WYPi------k--------~r 200 (279)
T COG2961 142 DGFLALKAHLPP---KERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAI----WYPI------K--------DR 200 (279)
T ss_pred CcHHHHhhhCCC---CCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEE----EEee------c--------ch
Confidence 998876554332 356789999988 3445555444443333 4566555 3211 0 33
Q ss_pred HHHHHHHHHhhcC
Q 029414 161 QAILDLNRSLADD 173 (194)
Q Consensus 161 ~~~~~~~~~l~~~ 173 (194)
+.++.|.+.++..
T Consensus 201 ~~~~~f~~~L~~~ 213 (279)
T COG2961 201 RQIRRFLRALEAL 213 (279)
T ss_pred HHHHHHHHHHhhc
Confidence 4588998888865
No 276
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.06 E-value=0.0009 Score=53.60 Aligned_cols=106 Identities=17% Similarity=0.185 Sum_probs=65.3
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 105 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD 105 (194)
.|++|||+|.|.|.....+-..+|.-..++.+|.+|..-+......+... +.......+|...-...+. ....|+
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~-t~~td~r~s~vt~dRl~lp----~ad~yt 187 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS-TEKTDWRASDVTEDRLSLP----AADLYT 187 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc-cccCCCCCCccchhccCCC----ccceee
Confidence 47899999999998877776666644678888888865544443332222 2122223333333222221 124688
Q ss_pred EEEEeC------CccccHHHHHHHHhcccCCeEEEEe
Q 029414 106 YAFVDA------DKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 106 ~i~id~------~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
++++-. ........++.+|.++.|||.||+-
T Consensus 188 l~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lViv 224 (484)
T COG5459 188 LAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIV 224 (484)
T ss_pred hhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEE
Confidence 876542 2233445789999999999999984
No 277
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.01 E-value=0.0021 Score=53.77 Aligned_cols=130 Identities=15% Similarity=0.213 Sum_probs=76.6
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 105 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD 105 (194)
.-.+|+|..+|.|.++..|... .|..+-.-|..-...-..+-..|+ +-+++ |-.+.++++ ...||
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~-----~VWVMNVVP~~~~ntL~vIydRGL---IG~yh-DWCE~fsTY------PRTYD 429 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDD-----PVWVMNVVPVSGPNTLPVIYDRGL---IGVYH-DWCEAFSTY------PRTYD 429 (506)
T ss_pred ceeeeeeecccccHHHHHhccC-----CceEEEecccCCCCcchhhhhccc---chhcc-chhhccCCC------Ccchh
Confidence 3458999999999999998753 244444333211111111222232 33333 444544554 57899
Q ss_pred EEEEeCC------ccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEEE
Q 029414 106 YAFVDAD------KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLS 179 (194)
Q Consensus 106 ~i~id~~------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 179 (194)
+|+.++. .......+-++-|.|+|+|.+++.|... ....++.....+ +|.+.
T Consensus 430 LlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~------------------vl~~v~~i~~~l----rW~~~ 487 (506)
T PF03141_consen 430 LLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVD------------------VLEKVKKIAKSL----RWEVR 487 (506)
T ss_pred heehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHH------------------HHHHHHHHHHhC----cceEE
Confidence 9998864 2334556666779999999999976441 444455555554 45555
Q ss_pred eeecC------CeeEEEEE
Q 029414 180 HVALG------DGITICRR 192 (194)
Q Consensus 180 ~~p~~------~G~~i~~~ 192 (194)
+.-.. ..+.+|+|
T Consensus 488 ~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 488 IHDTEDGPDGPEKILICQK 506 (506)
T ss_pred EEecCCCCCCCceEEEEEC
Confidence 55433 45666664
No 278
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.98 E-value=0.0003 Score=54.98 Aligned_cols=114 Identities=13% Similarity=0.032 Sum_probs=74.4
Q ss_pred HHHHHHHHHHcCCCeEEEEcccccHHHH-HHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHH
Q 029414 15 GQLMAMLLRLVNAKKTIEIGVFTGYSLL-LTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ 93 (194)
Q Consensus 15 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~-~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 93 (194)
.+.++.+--...+..|+|+.+|.||+|+ ++..+ + ...|+++|.+|..++..+++++.+++..+..+..+|....-+.
T Consensus 183 ~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~a-g-Ak~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~ 260 (351)
T KOG1227|consen 183 KEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTA-G-AKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPR 260 (351)
T ss_pred HHHHHhhhcccccchhhhhhcccceEEeehhhcc-C-ccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCcc
Confidence 3444444444456889999999999999 55443 2 5789999999999999999999888777777777776443222
Q ss_pred HhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCC-e-EEEEeccc
Q 029414 94 LLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-G-IAVYDNTL 139 (194)
Q Consensus 94 ~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~g-G-~lv~~~~~ 139 (194)
...|-|.+.--++.-.. +-.+.+.|+|. | ++-++...
T Consensus 261 --------~~AdrVnLGLlPSse~~-W~~A~k~Lk~eggsilHIHenV 299 (351)
T KOG1227|consen 261 --------LRADRVNLGLLPSSEQG-WPTAIKALKPEGGSILHIHENV 299 (351)
T ss_pred --------ccchheeeccccccccc-hHHHHHHhhhcCCcEEEEeccc
Confidence 45666666533322222 22334566655 4 55555433
No 279
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.031 Score=42.95 Aligned_cols=122 Identities=12% Similarity=0.139 Sum_probs=85.1
Q ss_pred CCHHHHHHHHH----HHHHcCCCeEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEE
Q 029414 10 TAPDAGQLMAM----LLRLVNAKKTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKKAGVDHKINF 82 (194)
Q Consensus 10 ~~~~~~~~l~~----l~~~~~~~~vLeiG~G~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~ 82 (194)
..+-..+++.. ++....+...+|+|+|+-.-+..+...+.+ -.+++.+|++...+....+.+.+--..-.+.-
T Consensus 58 pTRtEaaIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~ 137 (321)
T COG4301 58 PTRTEAAILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNA 137 (321)
T ss_pred CchhHHHHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEee
Confidence 34445555554 444567899999999999988888777753 26899999999988766655554322224666
Q ss_pred EecchHHHHHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEE
Q 029414 83 IESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 83 ~~~d~~~~~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
+.+|....+..+.. .+.-=++|+... +.....++..+...++||-++.+
T Consensus 138 l~~~~~~~La~~~~----~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll 191 (321)
T COG4301 138 LCGDYELALAELPR----GGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLL 191 (321)
T ss_pred hhhhHHHHHhcccC----CCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence 77888777666531 244445555532 55677889999999999988877
No 280
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.97 E-value=0.011 Score=47.11 Aligned_cols=106 Identities=15% Similarity=0.121 Sum_probs=68.1
Q ss_pred HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414 24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 102 (194)
Q Consensus 24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 102 (194)
...+.+||-+|+|. |..+...|+++. ..+|+.+|.++..++.||+ + |...-...-+.+..+.+.+.........
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~-~---Ga~~~~~~~~~~~~~~~~~~v~~~~g~~ 241 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK-F---GATVTDPSSHKSSPQELAELVEKALGKK 241 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH-h---CCeEEeeccccccHHHHHHHHHhhcccc
Confidence 34578999999995 778888888887 7899999999999999998 4 4331111122221222222211111123
Q ss_pred ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414 103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
.+|+.|-.. ....-++.+...++++|.+++..
T Consensus 242 ~~d~~~dCs---G~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 242 QPDVTFDCS---GAEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred CCCeEEEcc---CchHHHHHHHHHhccCCEEEEec
Confidence 588777433 22334667789999999977743
No 281
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.93 E-value=0.005 Score=52.34 Aligned_cols=131 Identities=21% Similarity=0.303 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414 10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 86 (194)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d 86 (194)
+.+++.++|..++...+..+|.|-.||+|......+..+.. ...+++.|.++..+..++.++--++.+..+...++|
T Consensus 170 TP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~d 249 (489)
T COG0286 170 TPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGD 249 (489)
T ss_pred ChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccc
Confidence 45567777777777656679999999999887776666532 367999999999999999999888876445666666
Q ss_pred hHHHHHHHhhcCCCCCceeEEEEeCC----------------------------ccccHHHHHHHHhcccCCe---EEEE
Q 029414 87 ALSVLDQLLKYSENEGSFDYAFVDAD----------------------------KDNYCNYHERLMKLLKVGG---IAVY 135 (194)
Q Consensus 87 ~~~~~~~~~~~~~~~~~fD~i~id~~----------------------------~~~~~~~~~~~~~~L~~gG---~lv~ 135 (194)
........ ..+..+.||+|+..++ ......++.++...|+||| +++.
T Consensus 250 tl~~~~~~--~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~ 327 (489)
T COG0286 250 TLSNPKHD--DKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP 327 (489)
T ss_pred cccCCccc--ccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence 54321110 0012367898875532 0112677899999999976 3444
Q ss_pred ecccccc
Q 029414 136 DNTLWGG 142 (194)
Q Consensus 136 ~~~~~~g 142 (194)
+.++..|
T Consensus 328 ~gvlfr~ 334 (489)
T COG0286 328 DGVLFRG 334 (489)
T ss_pred CCcCcCC
Confidence 4454443
No 282
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.0055 Score=43.26 Aligned_cols=115 Identities=14% Similarity=0.108 Sum_probs=80.1
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414 10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 89 (194)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 89 (194)
+.......|+.+ +.++..+.+|+|+|-|...+.-++.. --.-+++|.+|-.+..++-+.-+.++....+++..|...
T Consensus 57 tteQv~nVLSll-~~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK 133 (199)
T KOG4058|consen 57 TTEQVENVLSLL-RGNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWK 133 (199)
T ss_pred cHHHHHHHHHHc-cCCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhh
Confidence 344444454433 34555789999999999988888764 245789999999999888888788888788888777655
Q ss_pred HHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 90 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 90 ~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
+ + ...|..+.+-+..+-....-..+...++.|..++.-
T Consensus 134 ~--d-------l~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 134 V--D-------LRDYRNVVIFGAESVMPDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred c--c-------ccccceEEEeehHHHHhhhHHHHHhhCcCCCeEEEE
Confidence 3 1 245666666555444444445555578888888774
No 283
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.85 E-value=0.017 Score=46.60 Aligned_cols=97 Identities=21% Similarity=0.205 Sum_probs=67.8
Q ss_pred HcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414 24 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 102 (194)
Q Consensus 24 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 102 (194)
..++++|+-+|.| .|..++.+|+.+ +.+|+++|.+++..+.|++. +.+ .++.....+..+.. .+
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~l----GAd---~~i~~~~~~~~~~~------~~ 228 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKL----GAD---HVINSSDSDALEAV------KE 228 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHh----CCc---EEEEcCCchhhHHh------Hh
Confidence 4467889998887 345788888875 48999999999988888765 322 33332222333443 23
Q ss_pred ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEeccc
Q 029414 103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 139 (194)
Q Consensus 103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 139 (194)
.||+|+.-.. ...++...+.|++||.+++-...
T Consensus 229 ~~d~ii~tv~----~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 229 IADAIIDTVG----PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred hCcEEEECCC----hhhHHHHHHHHhcCCEEEEECCC
Confidence 4998887553 45678888999999999986544
No 284
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=96.82 E-value=0.01 Score=45.74 Aligned_cols=115 Identities=14% Similarity=0.163 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH
Q 029414 11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 90 (194)
Q Consensus 11 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 90 (194)
.+....++..+...+.... +..-.|+-..+..+.+ +..+.+.+|+.|+-.+..++++... .++++.+.|..+.
T Consensus 43 p~~l~~yl~~v~~~n~~~~-l~~YPGSP~ia~~llR---~qDrl~l~ELHp~d~~~L~~~~~~~---~~v~v~~~DG~~~ 115 (245)
T PF04378_consen 43 PPALQPYLDAVRALNPDGE-LRFYPGSPAIAARLLR---EQDRLVLFELHPQDFEALKKNFRRD---RRVRVHHRDGYEG 115 (245)
T ss_dssp -GGGHHHHHHHHHHSSSSS---EEE-HHHHHHHHS----TTSEEEEE--SHHHHHHHTTS--TT---S-EEEE-S-HHHH
T ss_pred hHHHHHHHHHHHHhccCCC-cCcCCCCHHHHHHhCC---ccceEEEEecCchHHHHHHHHhccC---CccEEEeCchhhh
Confidence 3445667777766654433 6666666666666665 3679999999999999988888643 4899999999998
Q ss_pred HHHHhhcCCCCCceeEEEEeCC---ccccHHHHHHHHhccc--CCeEEEE
Q 029414 91 LDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLK--VGGIAVY 135 (194)
Q Consensus 91 ~~~~~~~~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~--~gG~lv~ 135 (194)
+..+.+. .++--+|+||.+ +.++....+.+...++ +.|++++
T Consensus 116 l~allPP---~~rRglVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~i 162 (245)
T PF04378_consen 116 LKALLPP---PERRGLVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAI 162 (245)
T ss_dssp HHHH-S----TTS-EEEEE-----STTHHHHHHHHHHHHHHH-TTSEEEE
T ss_pred hhhhCCC---CCCCeEEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEE
Confidence 7776443 456789999987 4455555554444443 5576655
No 285
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=96.76 E-value=0.054 Score=38.24 Aligned_cols=102 Identities=18% Similarity=0.230 Sum_probs=56.0
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 029414 27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 106 (194)
Q Consensus 27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~ 106 (194)
+.-|||+|-|+|..=-.+-+.+| +-+|+.+|..-.... .-.|+.-.++.||+.+.++.+..- ..+.-+
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p-~R~I~vfDR~l~~hp--------~~~P~~~~~ilGdi~~tl~~~~~~---g~~a~l 96 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFP-DRRIYVFDRALACHP--------SSTPPEEDLILGDIRETLPALARF---GAGAAL 96 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH---SS-EEEEESS--S-G--------GG---GGGEEES-HHHHHHHHHHH----S-EEE
T ss_pred CCceEEeccCCCccHHHHHHhCC-CCeEEEEeeecccCC--------CCCCchHheeeccHHHHhHHHHhc---CCceEE
Confidence 35799999999999888988887 899999997532211 122445678999999988773211 356677
Q ss_pred EEEeCCccc---cHH---HH-HHHHhcccCCeEEEEecccc
Q 029414 107 AFVDADKDN---YCN---YH-ERLMKLLKVGGIAVYDNTLW 140 (194)
Q Consensus 107 i~id~~~~~---~~~---~~-~~~~~~L~~gG~lv~~~~~~ 140 (194)
++.|-...+ -.. .+ ..+..+|.|||+++....+.
T Consensus 97 aHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl~ 137 (160)
T PF12692_consen 97 AHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPLY 137 (160)
T ss_dssp EEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred EEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence 777754211 111 11 22347999999999976654
No 286
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=96.70 E-value=0.0072 Score=41.51 Aligned_cols=91 Identities=20% Similarity=0.258 Sum_probs=61.2
Q ss_pred cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCccc
Q 029414 36 FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN 115 (194)
Q Consensus 36 G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~ 115 (194)
|.|..++.+|+... .+|+++|.+++..+.+++ .|...-+.....|..+.+..+.. ...+|+++-...
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~----~Ga~~~~~~~~~~~~~~i~~~~~----~~~~d~vid~~g--- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKE----LGADHVIDYSDDDFVEQIRELTG----GRGVDVVIDCVG--- 67 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHH----TTESEEEETTTSSHHHHHHHHTT----TSSEEEEEESSS---
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHh----hcccccccccccccccccccccc----cccceEEEEecC---
Confidence 46888999999864 899999999988877765 34221111122334444444421 247998875432
Q ss_pred cHHHHHHHHhcccCCeEEEEeccc
Q 029414 116 YCNYHERLMKLLKVGGIAVYDNTL 139 (194)
Q Consensus 116 ~~~~~~~~~~~L~~gG~lv~~~~~ 139 (194)
....++.+++.++++|.+++-...
T Consensus 68 ~~~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 68 SGDTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp SHHHHHHHHHHEEEEEEEEEESST
T ss_pred cHHHHHHHHHHhccCCEEEEEEcc
Confidence 246788899999999999996544
No 287
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.63 E-value=0.0027 Score=48.08 Aligned_cols=84 Identities=10% Similarity=0.248 Sum_probs=58.5
Q ss_pred CeEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHhHHHHHHHc-CCCCcEEEEe-cchHHHHHHHhhcCCCCCce
Q 029414 28 KKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFIE-SEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 28 ~~vLeiG~G~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~v~~~~-~d~~~~~~~~~~~~~~~~~f 104 (194)
-++||||+| .+.++=...+ ..+-+.++.|+++..++.|+..+..+ ++...+++.. .|...+++..... .+.|
T Consensus 80 i~~LDIGvG--AnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~---nE~y 154 (292)
T COG3129 80 IRILDIGVG--ANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGK---NERY 154 (292)
T ss_pred eEEEeeccC--cccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccc---ccee
Confidence 378999885 4555533222 23678999999999999999999887 6666677644 4555555554221 5789
Q ss_pred eEEEEeCCcccc
Q 029414 105 DYAFVDADKDNY 116 (194)
Q Consensus 105 D~i~id~~~~~~ 116 (194)
|+..|+++..+.
T Consensus 155 d~tlCNPPFh~s 166 (292)
T COG3129 155 DATLCNPPFHDS 166 (292)
T ss_pred eeEecCCCcchh
Confidence 999999874443
No 288
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.57 E-value=0.0038 Score=46.90 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHHHcC----CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414 10 TAPDAGQLMAMLLRLVN----AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES 85 (194)
Q Consensus 10 ~~~~~~~~l~~l~~~~~----~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 85 (194)
++.-..++|.......+ .-++|||||=+..+...-.. --.|+.||+++. .-.+.+.
T Consensus 31 SSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~----~fdvt~IDLns~----------------~~~I~qq 90 (219)
T PF11968_consen 31 SSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSG----WFDVTRIDLNSQ----------------HPGILQQ 90 (219)
T ss_pred hhHHHHHHhhhhccccccccccceEEeecccCCCCcccccC----ceeeEEeecCCC----------------CCCceee
Confidence 34444455554443322 24899999976655444322 235999999862 2345556
Q ss_pred chHHH-HHHHhhcCCCCCceeEEEEeCC------ccccHHHHHHHHhcccCCeE
Q 029414 86 EALSV-LDQLLKYSENEGSFDYAFVDAD------KDNYCNYHERLMKLLKVGGI 132 (194)
Q Consensus 86 d~~~~-~~~~~~~~~~~~~fD~i~id~~------~~~~~~~~~~~~~~L~~gG~ 132 (194)
|+.+. ++. .+.++||+|.+.-. ....-..++.+.+.|+|+|.
T Consensus 91 DFm~rplp~-----~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 91 DFMERPLPK-----NESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred ccccCCCCC-----CcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence 66553 222 13578999976632 44566788999999999999
No 289
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.56 E-value=0.0055 Score=50.61 Aligned_cols=59 Identities=24% Similarity=0.351 Sum_probs=51.8
Q ss_pred eEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414 29 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 89 (194)
Q Consensus 29 ~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 89 (194)
.|||||+|+|..+...+++. ...++++|.-..+.+.|++-...+|..++++++...+.+
T Consensus 69 ~vLdigtGTGLLSmMAvrag--aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte 127 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG--ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE 127 (636)
T ss_pred EEEEccCCccHHHHHHHHhc--CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence 58999999999998888875 357999999999999999999999999999988766544
No 290
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.41 E-value=0.043 Score=45.15 Aligned_cols=106 Identities=17% Similarity=0.176 Sum_probs=67.7
Q ss_pred HHcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc-hHHHHHHHhhcCCC
Q 029414 23 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-ALSVLDQLLKYSEN 100 (194)
Q Consensus 23 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~~~~~ 100 (194)
+..++.+||..|+|. |..+..+|+..+ ..++++++.+++..+.+++.. +. ..+.....+ ..+.+..+. .
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~----~ 251 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELT----G 251 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHc----C
Confidence 344677999999987 888888998864 346999999998888777653 21 122222221 223233321 1
Q ss_pred CCceeEEEEeCCc------------------cccHHHHHHHHhcccCCeEEEEec
Q 029414 101 EGSFDYAFVDADK------------------DNYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 101 ~~~fD~i~id~~~------------------~~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
...+|+++-.... .+....++.+++.++++|.++.-.
T Consensus 252 ~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 252 GRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 2469977643211 123456788899999999998753
No 291
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.33 E-value=0.016 Score=43.89 Aligned_cols=97 Identities=14% Similarity=0.168 Sum_probs=63.2
Q ss_pred CCeEEEEcccccHHHHHHHhhCCC----C----CEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH--HHHHHhh
Q 029414 27 AKKTIEIGVFTGYSLLLTALTIPE----D----GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLK 96 (194)
Q Consensus 27 ~~~vLeiG~G~G~~~~~la~~~~~----~----~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~ 96 (194)
-++++|+.+..|.++-.+++.+-+ . .+++++|+.+- ... +.|.-+++|... .+..+..
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI-~GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------API-EGVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------Ccc-CceEEeecccCCHhHHHHHHH
Confidence 478999999999999998877632 1 13999999751 122 356666777432 1222111
Q ss_pred cCCCCCceeEEEEeCCc-----cc---------cHHHHHHHHhcccCCeEEEEe
Q 029414 97 YSENEGSFDYAFVDADK-----DN---------YCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 97 ~~~~~~~fD~i~id~~~-----~~---------~~~~~~~~~~~L~~gG~lv~~ 136 (194)
. ...++-|+|++|+.+ ++ ..+.+.-....|+|||.+|.-
T Consensus 110 h-fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 110 H-FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred H-hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 1 134689999999862 12 234455556899999999874
No 292
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=96.27 E-value=0.014 Score=40.16 Aligned_cols=52 Identities=25% Similarity=0.324 Sum_probs=39.4
Q ss_pred cEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCcc--c----cHHHHHHHHhcccCCeEEEEe
Q 029414 79 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--N----YCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 79 ~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~--~----~~~~~~~~~~~L~~gG~lv~~ 136 (194)
++++..||+.+.++++ ...||++|.|+..+ + ..++++.+.++++|||++...
T Consensus 32 ~L~L~~gDa~~~l~~l------~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Ty 89 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQL------DARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATY 89 (124)
T ss_dssp EEEEEES-HHHHHHHB-------T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES
T ss_pred EEEEEEcHHHHHHHhC------cccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEe
Confidence 4678899999998887 47899999997521 1 367899999999999999985
No 293
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.20 E-value=0.048 Score=44.03 Aligned_cols=97 Identities=18% Similarity=0.248 Sum_probs=58.4
Q ss_pred CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414 26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f 104 (194)
++++||-.|+|. |..+..+|+... ..+|+++|.+++.++.+++ .|...-+.....+..+.... .+.+
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~-------~g~~ 236 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKAE-------KGYF 236 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhcc-------CCCC
Confidence 467899888752 456666777653 3479999999988887765 24321111111122121111 2459
Q ss_pred eEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414 105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
|+||-.... ...++.+.+.+++||.++.-.
T Consensus 237 D~vid~~G~---~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 237 DVSFEVSGH---PSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred CEEEECCCC---HHHHHHHHHHhhcCCEEEEEc
Confidence 987743222 245677889999999999854
No 294
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=96.01 E-value=0.026 Score=45.87 Aligned_cols=53 Identities=13% Similarity=0.178 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHH
Q 029414 14 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGL 68 (194)
Q Consensus 14 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~ 68 (194)
..+++..+......+.++|+|+|.|+.+..++..+ +..|.+||.+....+.|+
T Consensus 141 lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 141 LSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQ 193 (476)
T ss_pred HHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHH
Confidence 34566667777788999999999999999999875 689999999987666554
No 295
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.94 E-value=0.032 Score=37.54 Aligned_cols=89 Identities=19% Similarity=0.082 Sum_probs=60.1
Q ss_pred ccccHHHHHHHhhCCCCC-EEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH--HHHHHhhcCCCCCceeEEEEeC
Q 029414 35 VFTGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFDYAFVDA 111 (194)
Q Consensus 35 ~G~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~fD~i~id~ 111 (194)
||.|..+..+++.+..++ .++.+|.+++..+.+++. .+.++.||+.+ .+... .-.+.|.+++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~--------~~~~i~gd~~~~~~l~~a-----~i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE--------GVEVIYGDATDPEVLERA-----GIEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--------TSEEEES-TTSHHHHHHT-----TGGCESEEEEES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc--------ccccccccchhhhHHhhc-----CccccCEEEEcc
Confidence 456788888877775555 899999999887766643 36788898865 34443 135789999876
Q ss_pred CccccHHHHHHHHhcccCCeEEEEe
Q 029414 112 DKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 112 ~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
......-......+.+.|...+++.
T Consensus 71 ~~d~~n~~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 71 DDDEENLLIALLARELNPDIRIIAR 95 (116)
T ss_dssp SSHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 5444444444555777788888774
No 296
>PRK11524 putative methyltransferase; Provisional
Probab=95.86 E-value=0.022 Score=44.99 Aligned_cols=53 Identities=21% Similarity=0.339 Sum_probs=41.0
Q ss_pred cEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCcc------c---------c----HHHHHHHHhcccCCeEEEEe
Q 029414 79 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------N---------Y----CNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 79 ~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~------~---------~----~~~~~~~~~~L~~gG~lv~~ 136 (194)
+.+++++|+.+.+..+. .++||+|++|++.. . + ..+++.+.++|+|||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l~-----~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIP-----SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcc-----cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 56899999999876652 47899999997621 0 1 35778889999999999874
No 297
>PRK13699 putative methylase; Provisional
Probab=95.86 E-value=0.018 Score=44.00 Aligned_cols=51 Identities=16% Similarity=0.264 Sum_probs=39.9
Q ss_pred EEEEecchHHHHHHHhhcCCCCCceeEEEEeCCcc------------------ccHHHHHHHHhcccCCeEEEE
Q 029414 80 INFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------------------NYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 80 v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~------------------~~~~~~~~~~~~L~~gG~lv~ 135 (194)
.+++.+|+.+.+..+. ++++|+|+.|++.. -....++++.+.|||||.+++
T Consensus 2 ~~l~~gD~le~l~~lp-----d~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARFP-----DNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechHHHHHHhCC-----ccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3688999999988863 67999999997521 013567888899999999876
No 298
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.82 E-value=0.047 Score=42.13 Aligned_cols=101 Identities=18% Similarity=0.169 Sum_probs=60.1
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHH-----HHcCCCCcEE---EEecchHHHHHHHhhc
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII-----KKAGVDHKIN---FIESEALSVLDQLLKY 97 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~-----~~~~~~~~v~---~~~~d~~~~~~~~~~~ 97 (194)
++.+|||+|+|+|..++.+|... ...++..|... .....+.+. +..++...+. +..+++......
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~---- 158 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL--GAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFR---- 158 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh--cceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhc----
Confidence 45679999999998888888764 56788877743 333333332 2122211232 233444333222
Q ss_pred CCCCCc-eeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEe
Q 029414 98 SENEGS-FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 98 ~~~~~~-fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
.+. +|+|+..-. .+........+..+|..++.+.+.
T Consensus 159 ---~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~ 198 (248)
T KOG2793|consen 159 ---LPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLA 198 (248)
T ss_pred ---cCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEE
Confidence 233 899986533 455666777777888888855554
No 299
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.80 E-value=0.38 Score=41.23 Aligned_cols=106 Identities=18% Similarity=0.126 Sum_probs=66.2
Q ss_pred cCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEE--e-------------cchH
Q 029414 25 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI--E-------------SEAL 88 (194)
Q Consensus 25 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~--~-------------~d~~ 88 (194)
.++.+|+-+|+|. |..++..|+.+. .+|+++|.+++.++.+++. |.. .+.+- . .+..
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aesl----GA~-~v~i~~~e~~~~~~gya~~~s~~~~ 235 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVESM----GAE-FLELDFEEEGGSGDGYAKVMSEEFI 235 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHc----CCe-EEEeccccccccccchhhhcchhHH
Confidence 3588999999996 667888888764 5899999999988877762 321 11110 0 0111
Q ss_pred HHHHHHhhcCCCCCceeEEEEeCCcc---ccHHHHHHHHhcccCCeEEEEeccc
Q 029414 89 SVLDQLLKYSENEGSFDYAFVDADKD---NYCNYHERLMKLLKVGGIAVYDNTL 139 (194)
Q Consensus 89 ~~~~~~~~~~~~~~~fD~i~id~~~~---~~~~~~~~~~~~L~~gG~lv~~~~~ 139 (194)
+.......+ ....+|+++-....+ ....+.+.+.+.+||||+|+.-.+.
T Consensus 236 ~~~~~~~~~--~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~ 287 (509)
T PRK09424 236 KAEMALFAE--QAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAE 287 (509)
T ss_pred HHHHHHHHh--ccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccC
Confidence 111111000 124699888665432 2333359999999999999875543
No 300
>PRK11524 putative methyltransferase; Provisional
Probab=95.68 E-value=0.055 Score=42.74 Aligned_cols=56 Identities=11% Similarity=0.094 Sum_probs=45.6
Q ss_pred HHHHHHHHHH--cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHH
Q 029414 15 GQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK 73 (194)
Q Consensus 15 ~~~l~~l~~~--~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~ 73 (194)
.+++..++.. .++..|||..+|+|..++...+. +-+.+++|++++..+.|++++..
T Consensus 195 ~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~l---gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASSNPGDIVLDPFAGSFTTGAVAKAS---GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh
Confidence 5666666654 46789999999999887766654 56899999999999999999864
No 301
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=95.62 E-value=0.19 Score=40.05 Aligned_cols=99 Identities=21% Similarity=0.243 Sum_probs=60.9
Q ss_pred HcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414 24 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 102 (194)
Q Consensus 24 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 102 (194)
..++.+||..|+| .|..+..+|+.. +.++++++.+++..+.+++ .+...-+.....+..+.+ ... ..+
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~-~~~----~~~ 231 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKK-AAG----LGG 231 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHH-HHh----cCC
Confidence 4456788888876 477788888874 5679999998887776643 343211111111222222 211 135
Q ss_pred ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
.+|+++-... ....++.+++.|+++|.++.-
T Consensus 232 ~~D~vid~~g---~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 232 GFDVIFDFVG---TQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred CceEEEECCC---CHHHHHHHHHHhhcCCEEEEE
Confidence 7997663221 134677889999999999874
No 302
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.53 E-value=0.19 Score=40.10 Aligned_cols=95 Identities=14% Similarity=0.158 Sum_probs=68.3
Q ss_pred CCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414 27 AKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 105 (194)
Q Consensus 27 ~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD 105 (194)
+.+|.-+|.|. |..+..+|..+ ++.|+.+|.|.+.+......| ..++..+..+...+-..+ .+.|
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~f-----~~rv~~~~st~~~iee~v-------~~aD 233 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDDLF-----GGRVHTLYSTPSNIEEAV-------KKAD 233 (371)
T ss_pred CccEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhHhh-----CceeEEEEcCHHHHHHHh-------hhcc
Confidence 45677777774 78888888875 589999999998888777665 246777777776655544 5678
Q ss_pred EEEEe---CCccccHHHHHHHHhcccCCeEEEE
Q 029414 106 YAFVD---ADKDNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 106 ~i~id---~~~~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
+++-. .....+.-..++..+.+|||++|+=
T Consensus 234 lvIgaVLIpgakaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 234 LVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred EEEEEEEecCCCCceehhHHHHHhcCCCcEEEE
Confidence 77532 2234455567888899999999874
No 303
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=95.46 E-value=0.0091 Score=46.60 Aligned_cols=104 Identities=22% Similarity=0.192 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414 10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 89 (194)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 89 (194)
..|.+.+++... ..+..++|+|||.|-.+. ..+...+++.|.+...+..+++. + ...+..+|+..
T Consensus 32 ~Wp~v~qfl~~~---~~gsv~~d~gCGngky~~-----~~p~~~~ig~D~c~~l~~~ak~~----~---~~~~~~ad~l~ 96 (293)
T KOG1331|consen 32 PWPMVRQFLDSQ---PTGSVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTGLLGGAKRS----G---GDNVCRADALK 96 (293)
T ss_pred ccHHHHHHHhcc---CCcceeeecccCCcccCc-----CCCcceeeecchhhhhccccccC----C---Cceeehhhhhc
Confidence 344455554432 346789999999986522 11367899999998777766642 1 11455566655
Q ss_pred HHHHHhhcCCCCCceeEEEEeCC------ccccHHHHHHHHhcccCCeEEEE
Q 029414 90 VLDQLLKYSENEGSFDYAFVDAD------KDNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 90 ~~~~~~~~~~~~~~fD~i~id~~------~~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
.... ..+||.++.-+. .......++++.+.++|||-..+
T Consensus 97 ~p~~-------~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 97 LPFR-------EESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred CCCC-------CCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 4322 578998875543 33456778999999999998666
No 304
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=95.42 E-value=0.63 Score=33.63 Aligned_cols=110 Identities=19% Similarity=0.234 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHHH--cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414 11 APDAGQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 88 (194)
Q Consensus 11 ~~~~~~~l~~l~~~--~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 88 (194)
+..+...|...+.. ....+|+-|||=+-+..+.- ...++.++...|.|. +++..+-+ ...++-.+..
T Consensus 8 s~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~--------RF~~~~~~-~F~fyD~~~p 76 (162)
T PF10237_consen 8 SDETAEFLARELLDGALDDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDR--------RFEQFGGD-EFVFYDYNEP 76 (162)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecc--------hHHhcCCc-ceEECCCCCh
Confidence 44455555554444 34578999998554443333 222367899999986 34443321 2444444444
Q ss_pred HHHHHHhhcCCCCCceeEEEEeCCc--cccH-HHHHHHHhcccCCeEEEEe
Q 029414 89 SVLDQLLKYSENEGSFDYAFVDADK--DNYC-NYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 89 ~~~~~~~~~~~~~~~fD~i~id~~~--~~~~-~~~~~~~~~L~~gG~lv~~ 136 (194)
..++... .++||+|++|++. +... .....+..++++++.|++.
T Consensus 77 ~~~~~~l-----~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~ 122 (162)
T PF10237_consen 77 EELPEEL-----KGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILC 122 (162)
T ss_pred hhhhhhc-----CCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEe
Confidence 3333321 4799999999883 2333 3334444556787888874
No 305
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.41 E-value=0.036 Score=46.94 Aligned_cols=117 Identities=15% Similarity=0.107 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHcC------CCeEEEEcccccHHHHH---HHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEE
Q 029414 12 PDAGQLMAMLLRLVN------AKKTIEIGVFTGYSLLL---TALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF 82 (194)
Q Consensus 12 ~~~~~~l~~l~~~~~------~~~vLeiG~G~G~~~~~---la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~ 82 (194)
.+..+++..|....+ ...|+-+|+|.|-.... .|+......+++++|-+|.++-..+. .......++|++
T Consensus 347 ~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vti 425 (649)
T KOG0822|consen 347 QYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTI 425 (649)
T ss_pred HHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEE
Confidence 345556666665432 34688899999964433 34444446789999999998876654 222233568999
Q ss_pred EecchHHHHHHHhhcCCCCCceeEEEEe-----CCccccHHHHHHHHhcccCCeEEEEe
Q 029414 83 IESEALSVLDQLLKYSENEGSFDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 83 ~~~d~~~~~~~~~~~~~~~~~fD~i~id-----~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
+.+|-.++-+. .++.|+++.. ++-+--.+-++.+.+.|||+|+-|=.
T Consensus 426 i~~DMR~w~ap-------~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 426 ISSDMRKWNAP-------REQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred EeccccccCCc-------hhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 99987665321 2678887532 22344467788899999999876643
No 306
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.39 E-value=0.049 Score=40.91 Aligned_cols=52 Identities=13% Similarity=0.144 Sum_probs=37.5
Q ss_pred HHHHHHHHH--HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHH
Q 029414 15 GQLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLP 69 (194)
Q Consensus 15 ~~~l~~l~~--~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~ 69 (194)
.+++..++. ..++..|||..+|+|..+....+. +-+.+++|++++..+.|++
T Consensus 178 ~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l---~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKASTNPGDIVLDPFAGSGTTAVAAEEL---GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHT---T-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhhhccceeeehhhhccChHHHHHHHc---CCeEEEEeCCHHHHHHhcC
Confidence 445555554 346789999999999887776665 5589999999999998875
No 307
>PRK13699 putative methylase; Provisional
Probab=95.38 E-value=0.096 Score=40.02 Aligned_cols=58 Identities=7% Similarity=0.003 Sum_probs=44.9
Q ss_pred HHHHHHHHH--HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC
Q 029414 15 GQLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG 75 (194)
Q Consensus 15 ~~~l~~l~~--~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 75 (194)
.+++..++. ..++..|||.-||+|..+....+. +-+.+++|++++..+.+++++....
T Consensus 150 ~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~~~ 209 (227)
T PRK13699 150 VTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAAVQ 209 (227)
T ss_pred HHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHHH
Confidence 345555543 346789999999999887776654 5689999999999999999886543
No 308
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=95.38 E-value=0.22 Score=40.69 Aligned_cols=102 Identities=23% Similarity=0.328 Sum_probs=59.6
Q ss_pred HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414 24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 102 (194)
Q Consensus 24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 102 (194)
..++++||-.|+|. |..+..+|+... ..+|+++|.+++..+.+++ .+...-+.....+..+.+..+. .+
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~-----~~ 258 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAG-ASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELT-----GG 258 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHh-----CC
Confidence 34567888888753 445566676643 2369999999988877754 3432111111122222222221 23
Q ss_pred ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414 103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 138 (194)
Q Consensus 103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 138 (194)
.+|+++- ... ....+..+++.++++|.++.-..
T Consensus 259 g~d~vid-~~G--~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 259 GVDYAFE-MAG--SVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CCCEEEE-CCC--ChHHHHHHHHHHhcCCEEEEEcc
Confidence 6897763 321 23456778899999999987543
No 309
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=95.34 E-value=0.21 Score=40.32 Aligned_cols=94 Identities=13% Similarity=0.097 Sum_probs=56.7
Q ss_pred cCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414 25 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 103 (194)
Q Consensus 25 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 103 (194)
.++++||-+|+|. |..+..+|+......+++++|.+++.++.+++ .+. .... + +. .. ...
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~~--~--~~-~~-------~~g 222 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYLI--D--DI-PE-------DLA 222 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eeeh--h--hh-hh-------ccC
Confidence 4578999999753 33444556542114689999999888877764 221 1111 1 11 11 135
Q ss_pred eeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414 104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
+|+|+=..........++.+.+.++++|.+++-.
T Consensus 223 ~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 223 VDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred CcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEe
Confidence 8977632222223456788899999999998754
No 310
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=95.31 E-value=0.26 Score=40.06 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=60.9
Q ss_pred HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414 24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 102 (194)
Q Consensus 24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 102 (194)
..++++||-.|+|. |..++.+|+... ..+|+++|.+++..+.+++ .+...-+.....+..+.+.... ...
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~----~~~ 244 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAG-ASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALT----GGF 244 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHh----CCC
Confidence 34578899988743 445666777643 2369999999888777754 3432112222223333333321 123
Q ss_pred ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414 103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 138 (194)
Q Consensus 103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 138 (194)
.+|+++ |.... ...+..+++.+++||.+++-..
T Consensus 245 g~d~vi-d~~g~--~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 245 GADVVI-DAVGR--PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCCEEE-ECCCC--HHHHHHHHHHhccCCEEEEECC
Confidence 689776 43221 2356778899999999987543
No 311
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=95.24 E-value=0.42 Score=38.74 Aligned_cols=100 Identities=12% Similarity=0.074 Sum_probs=62.6
Q ss_pred HcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec-chHHHHHHHhhcCCC
Q 029414 24 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSEN 100 (194)
Q Consensus 24 ~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~ 100 (194)
..++.+||-.|+ +.|..+..+|+.. +.++++++.+++..+.+++. .|...-+..... +..+.+....
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~----- 225 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKNK---LGFDEAFNYKEEPDLDAALKRYF----- 225 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHh---cCCCEEEECCCcccHHHHHHHHC-----
Confidence 446788999987 4677888888875 56899998888766655433 343311221111 3333333321
Q ss_pred CCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414 101 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
.+.+|+++ |... ...+..+++.++++|.++.-.
T Consensus 226 ~~gvD~v~-d~vG---~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 226 PEGIDIYF-DNVG---GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred CCCcEEEE-ECCC---HHHHHHHHHHhccCCEEEEEC
Confidence 24689777 4432 245678889999999998754
No 312
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=95.15 E-value=0.46 Score=37.74 Aligned_cols=100 Identities=11% Similarity=0.050 Sum_probs=62.3
Q ss_pred HHHcCCCeEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCC
Q 029414 22 LRLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE 99 (194)
Q Consensus 22 ~~~~~~~~vLeiG--~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 99 (194)
....++.+||-.| .+.|..++.+|+.. +.++++++.+++..+.+++ .+...-+.....+..+.+....
T Consensus 139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~~---- 208 (329)
T cd08294 139 CKPKAGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEAA---- 208 (329)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHC----
Confidence 3345677888887 45677778888875 5689999888877766654 3542112212223333333321
Q ss_pred CCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 100 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 100 ~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
.+.+|+++ |.... ..++.+++.|+++|.++.-
T Consensus 209 -~~gvd~vl-d~~g~---~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 209 -PDGIDCYF-DNVGG---EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred -CCCcEEEE-ECCCH---HHHHHHHHhhccCCEEEEE
Confidence 24699777 43222 4567888999999999864
No 313
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=95.08 E-value=0.45 Score=38.16 Aligned_cols=95 Identities=14% Similarity=0.135 Sum_probs=59.0
Q ss_pred CeEEEEcc--cccHHHHHHHhhCCCCC-EEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414 28 KKTIEIGV--FTGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 28 ~~vLeiG~--G~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f 104 (194)
.+||-.|+ |.|..+..+|+.. +. ++++++.+++..+.+++. .|...-+.....+..+.+..+. .+.+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~--G~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~~-----~~gv 225 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL--GCSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLRELC-----PEGV 225 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHC-----CCCc
Confidence 78988885 5677888888875 45 799998888766665553 3543111211223333333331 2469
Q ss_pred eEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
|+++ |.... ..+..+++.|+++|.++.-
T Consensus 226 d~vi-d~~g~---~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 226 DVYF-DNVGG---EISDTVISQMNENSHIILC 253 (345)
T ss_pred eEEE-ECCCc---HHHHHHHHHhccCCEEEEE
Confidence 9887 44322 2357788999999999863
No 314
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=95.06 E-value=1.1 Score=35.09 Aligned_cols=110 Identities=8% Similarity=0.045 Sum_probs=62.0
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCC--CCcEEEEecchHHHH-HHHhhcCCCCCc
Q 029414 27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--DHKINFIESEALSVL-DQLLKYSENEGS 103 (194)
Q Consensus 27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~-~~~~~~~~~~~~ 103 (194)
...|+.+|||. .|..+-...+.+.+++-+|. |+.++.=++.+.+.+. +.+.+++..|..+.+ ..+.........
T Consensus 82 ~~qvV~LGaGl--DTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 82 IRQVVILGAGL--DTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred CcEEEEeCCcc--ccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 56799999955 44444333232344544444 4455555555665442 357888888876422 333211011123
Q ss_pred eeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414 104 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL 139 (194)
Q Consensus 104 fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~ 139 (194)
.-++++.+. .+.....++.+.+...||+.|+++-+.
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 344554443 445667788887888899999997543
No 315
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=95.00 E-value=0.059 Score=38.38 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=28.8
Q ss_pred EEccccc--HHHHHHH-hhCCCCCEEEEEeCCcchHHhHHHH--HHHc
Q 029414 32 EIGVFTG--YSLLLTA-LTIPEDGQITAIDVNRETYEIGLPI--IKKA 74 (194)
Q Consensus 32 eiG~G~G--~~~~~la-~~~~~~~~v~~iD~~~~~~~~a~~~--~~~~ 74 (194)
|||++.| .++.+++ +...++++++++|++|..++..+++ +..+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 7999999 7766664 2344489999999999999999988 5544
No 316
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=94.96 E-value=0.76 Score=36.64 Aligned_cols=101 Identities=12% Similarity=0.082 Sum_probs=61.6
Q ss_pred HHHcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec-chHHHHHHHhhcC
Q 029414 22 LRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYS 98 (194)
Q Consensus 22 ~~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~ 98 (194)
....++.+||-.|. +.|..+..+|+.. +.++++++.+++..+.+++ .+...-+..... +..+.....
T Consensus 134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~---- 203 (325)
T TIGR02825 134 CGVKGGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKA---- 203 (325)
T ss_pred hCCCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHh----
Confidence 33456788998884 5677888888874 5689988888877666543 354211111111 222222222
Q ss_pred CCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414 99 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 99 ~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
..+.+|+++ |.... ..++.+++.|+++|.++.-.
T Consensus 204 -~~~gvdvv~-d~~G~---~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 204 -SPDGYDCYF-DNVGG---EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred -CCCCeEEEE-ECCCH---HHHHHHHHHhCcCcEEEEec
Confidence 124699877 44322 34577889999999999743
No 317
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=94.94 E-value=0.26 Score=38.67 Aligned_cols=102 Identities=18% Similarity=0.176 Sum_probs=70.0
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 105 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD 105 (194)
.++.|+-+|---=.+...++..+| .++..+|++...++...+-.++.++. |++.+.-|....+|+-. .++||
T Consensus 152 ~gK~I~vvGDDDLtsia~aLt~mp--k~iaVvDIDERli~fi~k~aee~g~~-~ie~~~~Dlr~plpe~~-----~~kFD 223 (354)
T COG1568 152 EGKEIFVVGDDDLTSIALALTGMP--KRIAVVDIDERLIKFIEKVAEELGYN-NIEAFVFDLRNPLPEDL-----KRKFD 223 (354)
T ss_pred CCCeEEEEcCchhhHHHHHhcCCC--ceEEEEechHHHHHHHHHHHHHhCcc-chhheeehhcccChHHH-----HhhCC
Confidence 457799998433222222333333 58999999999999999999999986 78888888877666632 47899
Q ss_pred EEEEeCC--ccccHHHHHHHHhcccCC---eEEEE
Q 029414 106 YAFVDAD--KDNYCNYHERLMKLLKVG---GIAVY 135 (194)
Q Consensus 106 ~i~id~~--~~~~~~~~~~~~~~L~~g---G~lv~ 135 (194)
+++-|++ ......++..-...|+-- |++-+
T Consensus 224 vfiTDPpeTi~alk~FlgRGI~tLkg~~~aGyfgi 258 (354)
T COG1568 224 VFITDPPETIKALKLFLGRGIATLKGEGCAGYFGI 258 (354)
T ss_pred eeecCchhhHHHHHHHHhccHHHhcCCCccceEee
Confidence 9988876 234455555555667655 55444
No 318
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=94.89 E-value=0.046 Score=42.98 Aligned_cols=70 Identities=11% Similarity=-0.019 Sum_probs=49.7
Q ss_pred eEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 029414 29 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF 108 (194)
Q Consensus 29 ~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~ 108 (194)
+++|+.||.|..+..+.... -..+.++|+++.+.+..+.++... ++.+|..++...-. .+.+|+++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~~-------~~~~Di~~~~~~~~-----~~~~D~l~ 67 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPNK-------LIEGDITKIDEKDF-----IPDIDLLT 67 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCCC-------CccCccccCchhhc-----CCCCCEEE
Confidence 68999999999988887652 236788999999998888876321 45566655432210 25799999
Q ss_pred EeCC
Q 029414 109 VDAD 112 (194)
Q Consensus 109 id~~ 112 (194)
.+.+
T Consensus 68 ~gpP 71 (275)
T cd00315 68 GGFP 71 (275)
T ss_pred eCCC
Confidence 8754
No 319
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=94.84 E-value=0.68 Score=37.16 Aligned_cols=100 Identities=12% Similarity=0.104 Sum_probs=62.5
Q ss_pred HHcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec-chHHHHHHHhhcCC
Q 029414 23 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSE 99 (194)
Q Consensus 23 ~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~ 99 (194)
...++.+||-.|+ +.|..+..+|+.. +.+++++..+++..+.+++.+ |...-+..... +..+.+....
T Consensus 148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~l---Ga~~vi~~~~~~~~~~~i~~~~---- 218 (338)
T cd08295 148 KPKKGETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNKL---GFDDAFNYKEEPDLDAALKRYF---- 218 (338)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhc---CCceeEEcCCcccHHHHHHHhC----
Confidence 3456789999886 5677778888875 568888888887766665433 43211221111 3333333321
Q ss_pred CCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 100 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 100 ~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
.+.+|+++ |.... ..+..+++.|+++|.++.-
T Consensus 219 -~~gvd~v~-d~~g~---~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 219 -PNGIDIYF-DNVGG---KMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred -CCCcEEEE-ECCCH---HHHHHHHHHhccCcEEEEe
Confidence 24699877 44322 4577888999999999864
No 320
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=94.68 E-value=0.5 Score=38.09 Aligned_cols=102 Identities=23% Similarity=0.236 Sum_probs=59.3
Q ss_pred cCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414 25 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 103 (194)
Q Consensus 25 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 103 (194)
.++.+||-.|+|. |..+..+|+... ...+++++.+++..+.+++ .+...-+.....+. +....+. ....
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~-~~~~~~~----~~~~ 228 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDINSEKLALAKS----LGAMQTFNSREMSA-PQIQSVL----RELR 228 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCceEecCcccCH-HHHHHHh----cCCC
Confidence 3567899988753 445566677653 2347889988887776543 34321111111121 2222221 1246
Q ss_pred eeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414 104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 138 (194)
Q Consensus 104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 138 (194)
+|.+++|.... ...+..+.+.+++||.+++-..
T Consensus 229 ~d~~v~d~~G~--~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 229 FDQLILETAGV--PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred CCeEEEECCCC--HHHHHHHHHHhhcCCEEEEEcc
Confidence 88666665432 3467778899999999998543
No 321
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=94.59 E-value=0.026 Score=46.50 Aligned_cols=65 Identities=22% Similarity=0.121 Sum_probs=57.3
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCc-EEEEecchHHHHH
Q 029414 25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK-INFIESEALSVLD 92 (194)
Q Consensus 25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~ 92 (194)
..+..|.|+.||.|-.++..+.. +++|++-|.++++++..+.++..+.+.+. ++++..|+.+++.
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred CCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence 35678999999999999999884 68999999999999999999988887655 9999999988774
No 322
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.58 E-value=0.3 Score=41.79 Aligned_cols=101 Identities=19% Similarity=0.185 Sum_probs=59.7
Q ss_pred CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEE---------------ecchHH
Q 029414 26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI---------------ESEALS 89 (194)
Q Consensus 26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~---------------~~d~~~ 89 (194)
++.+++-+|+|. |..+...+..+ +..|+.+|.+++.++.+++ .+.. .+.+- -.+..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~----lGa~-~v~v~~~e~g~~~~gYa~~~s~~~~~ 235 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQS----MGAE-FLELDFKEEGGSGDGYAKVMSEEFIA 235 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCe-EEeccccccccccccceeecCHHHHH
Confidence 568999999985 56777777775 4679999999987776664 2321 11111 011111
Q ss_pred HHHHHhhcCCCCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEE
Q 029414 90 VLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 90 ~~~~~~~~~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
....+..+ ....+|+|+.... .+...-..+...+.+|||++|+=
T Consensus 236 ~~~~~~~e--~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 236 AEMELFAA--QAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHH--HhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 11111110 1357999975542 22333356777899999999774
No 323
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=94.57 E-value=0.68 Score=35.32 Aligned_cols=99 Identities=20% Similarity=0.256 Sum_probs=60.7
Q ss_pred cCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414 25 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 103 (194)
Q Consensus 25 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 103 (194)
.++.+||..|+|. |..+..+++.. +.++++++.+++..+.+++. +...-+.....+..+... .. ..+.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~-~~----~~~~ 201 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKEL----GADHVIDYKEEDLEEELR-LT----GGGG 201 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHh----CCceeccCCcCCHHHHHH-Hh----cCCC
Confidence 5678999999885 66777777764 47899999988766665432 321111111112222111 11 1367
Q ss_pred eeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414 104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
+|+++..... ...+..+++.++++|.++.-.
T Consensus 202 ~d~vi~~~~~---~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 202 ADVVIDAVGG---PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred CCEEEECCCC---HHHHHHHHHhcccCCEEEEEc
Confidence 9988854322 145677788999999998743
No 324
>PLN02740 Alcohol dehydrogenase-like
Probab=94.56 E-value=0.67 Score=38.03 Aligned_cols=102 Identities=20% Similarity=0.263 Sum_probs=59.5
Q ss_pred HHcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe--cchHHHHHHHhhcCC
Q 029414 23 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSE 99 (194)
Q Consensus 23 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~~~ 99 (194)
...++++||-+|+|. |..++.+|+... ..+|+++|.+++.++.+++ .+....+.... .+..+.+..+.
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~---- 265 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARG-ASKIIGVDINPEKFEKGKE----MGITDFINPKDSDKPVHERIREMT---- 265 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCC-CCcEEEEcCChHHHHHHHH----cCCcEEEecccccchHHHHHHHHh----
Confidence 345678999998753 445566677643 2369999999988887754 34321122111 11223333321
Q ss_pred CCCceeEEEEeCCccccHHHHHHHHhcccCC-eEEEEec
Q 029414 100 NEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDN 137 (194)
Q Consensus 100 ~~~~fD~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~ 137 (194)
.+.+|+++-... ....+..++..++++ |.+++-.
T Consensus 266 -~~g~dvvid~~G---~~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 266 -GGGVDYSFECAG---NVEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred -CCCCCEEEECCC---ChHHHHHHHHhhhcCCCEEEEEc
Confidence 236997764322 224567777888886 8887643
No 325
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=94.48 E-value=0.057 Score=41.87 Aligned_cols=47 Identities=11% Similarity=0.017 Sum_probs=37.1
Q ss_pred CCeEEEEcccccHHHHHHHhhCCC-------CCEEEEEeCCcchHHhHHHHHHH
Q 029414 27 AKKTIEIGVFTGYSLLLTALTIPE-------DGQITAIDVNRETYEIGLPIIKK 73 (194)
Q Consensus 27 ~~~vLeiG~G~G~~~~~la~~~~~-------~~~v~~iD~~~~~~~~a~~~~~~ 73 (194)
+-+|+|+|+|.|..+..++..+.. ..+++.+|.+|...+.-++.+..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 468999999999999998877652 35899999999998888888765
No 326
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=94.36 E-value=0.043 Score=36.72 Aligned_cols=40 Identities=20% Similarity=0.494 Sum_probs=28.8
Q ss_pred ceeEEEEeCC---------ccccHHHHHHHHhcccCCeEEEEecccccc
Q 029414 103 SFDYAFVDAD---------KDNYCNYHERLMKLLKVGGIAVYDNTLWGG 142 (194)
Q Consensus 103 ~fD~i~id~~---------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 142 (194)
+||+|+|-.. ......+|+.+..+|+|||++++.--.|..
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~s 49 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKS 49 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHH
Confidence 4899987654 345678899999999999999997655544
No 327
>PLN02827 Alcohol dehydrogenase-like
Probab=94.35 E-value=0.62 Score=38.26 Aligned_cols=101 Identities=23% Similarity=0.248 Sum_probs=58.1
Q ss_pred HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe--cchHHHHHHHhhcCCC
Q 029414 24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSEN 100 (194)
Q Consensus 24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~~~~ 100 (194)
..++.+||-.|+|. |..++.+|+... ...+++++.+++..+.+++ .+...-+.... .+..+.+..+.
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~----- 260 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRG-ASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMT----- 260 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHh-----
Confidence 44678999988743 445556676643 2368889988877776643 35321111111 12222233321
Q ss_pred CCceeEEEEeCCccccHHHHHHHHhcccCC-eEEEEec
Q 029414 101 EGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDN 137 (194)
Q Consensus 101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~ 137 (194)
.+.+|+++- ... ....+..+.+.+++| |.+++-.
T Consensus 261 ~~g~d~vid-~~G--~~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 261 GGGADYSFE-CVG--DTGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CCCCCEEEE-CCC--ChHHHHHHHHhhccCCCEEEEEC
Confidence 236897763 321 223467788899998 9998744
No 328
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=94.25 E-value=1 Score=36.06 Aligned_cols=100 Identities=16% Similarity=0.211 Sum_probs=57.6
Q ss_pred HcCCCeEEEEcccc-cHHHHHHHhhCCCCCE-EEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414 24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 101 (194)
Q Consensus 24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 101 (194)
..++.+||-+|+|. |..+..+|+.. +.+ +++++.+++..+.+++ .+...-+.....+ .+.+.... ..
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~--G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~-~~~~~~~~----~~ 229 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARAL--GAEDVIGVDPSPERLELAKA----LGADFVINSGQDD-VQEIRELT----SG 229 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcch-HHHHHHHh----CC
Confidence 34577898888742 34555667765 445 9999998887776644 2432111111112 22222221 12
Q ss_pred CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414 102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
..+|+++-... ....+..+++.|+++|.+++-.
T Consensus 230 ~~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 230 AGADVAIECSG---NTAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CCCCEEEECCC---CHHHHHHHHHHhhcCCEEEEEc
Confidence 46997774322 2234566789999999998743
No 329
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.25 E-value=0.5 Score=38.87 Aligned_cols=96 Identities=17% Similarity=0.086 Sum_probs=55.7
Q ss_pred CCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414 26 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 26 ~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f 104 (194)
++.+|+-+|+| .|..+...+..+ +.+|+.+|.+++..+.+.+.+ +. .+.....+..+ +.+. -..+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~~~---g~--~v~~~~~~~~~-l~~~------l~~a 231 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL--GATVTILDINIDRLRQLDAEF---GG--RIHTRYSNAYE-IEDA------VKRA 231 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHhc---Cc--eeEeccCCHHH-HHHH------HccC
Confidence 56789999997 456666666665 458999999887665544433 21 22222222222 2332 2568
Q ss_pred eEEEEeCC---ccccHHHHHHHHhcccCCeEEEE
Q 029414 105 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 105 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
|+|+.... .....-+.+...+.++++++|+-
T Consensus 232 DvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 232 DLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred CEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEE
Confidence 99886532 11121123556677899887664
No 330
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.17 E-value=1.7 Score=32.11 Aligned_cols=101 Identities=19% Similarity=0.207 Sum_probs=51.8
Q ss_pred eEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHH------------HHHcCCCCcEEEEecchHHHHHHHh
Q 029414 29 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPI------------IKKAGVDHKINFIESEALSVLDQLL 95 (194)
Q Consensus 29 ~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~------------~~~~~~~~~v~~~~~d~~~~~~~~~ 95 (194)
+|--+|.| +.++.+|..+. .+.+|+++|++++.++..++- +.+..-..+.++. .|..+..
T Consensus 2 ~I~ViGlG--yvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai---- 74 (185)
T PF03721_consen 2 KIAVIGLG--YVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAI---- 74 (185)
T ss_dssp EEEEE--S--TTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH----
T ss_pred EEEEECCC--cchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhh----
Confidence 46667664 43333333221 257999999999877654421 1111001233333 2322222
Q ss_pred hcCCCCCceeEEEEeCC----------ccccHHHHHHHHhcccCCeEEEEecccccc
Q 029414 96 KYSENEGSFDYAFVDAD----------KDNYCNYHERLMKLLKVGGIAVYDNTLWGG 142 (194)
Q Consensus 96 ~~~~~~~~fD~i~id~~----------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 142 (194)
...|++|+..+ .....+..+.+.+.++++.++++..+..+|
T Consensus 75 ------~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppG 125 (185)
T PF03721_consen 75 ------KDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPG 125 (185)
T ss_dssp ------HH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTT
T ss_pred ------hccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEe
Confidence 24688887644 122356677778899999999998877666
No 331
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=94.13 E-value=0.24 Score=39.46 Aligned_cols=38 Identities=29% Similarity=0.415 Sum_probs=28.0
Q ss_pred CceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414 102 GSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL 139 (194)
Q Consensus 102 ~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~ 139 (194)
+.||+|+.... ..+..++++.+.+.|+|||+-+=-..+
T Consensus 258 ~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPL 298 (369)
T KOG2798|consen 258 GSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPL 298 (369)
T ss_pred CccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccce
Confidence 47998854321 567889999999999999987754333
No 332
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=94.03 E-value=0.82 Score=36.86 Aligned_cols=102 Identities=17% Similarity=0.225 Sum_probs=60.8
Q ss_pred HcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414 24 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 102 (194)
Q Consensus 24 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 102 (194)
..++++||-.|+| .|..+..+|+... ...+++++.+++..+.+++ .+...-+.....+..+....+. ...
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~----~~~ 234 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRG-AGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLT----GGK 234 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHh----CCC
Confidence 4456788888765 3556666777654 3468999998877766654 3432112222223223222321 124
Q ss_pred ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414 103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
.+|+++-.... ...+..+++.|+++|.++.-.
T Consensus 235 ~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 235 GVDAVIIAGGG---QDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred CCcEEEECCCC---HHHHHHHHHHhhcCCEEEEec
Confidence 69977743221 245778889999999998644
No 333
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.90 E-value=0.056 Score=44.03 Aligned_cols=90 Identities=21% Similarity=0.225 Sum_probs=70.2
Q ss_pred HHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhh
Q 029414 17 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK 96 (194)
Q Consensus 17 ~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 96 (194)
+-.+++....+.+|+|..|..|..|..+|......+++.++|.+++..+..++.+...|.. .+....+|+... ....
T Consensus 204 lpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~-~~~~~~~df~~t-~~~~- 280 (413)
T KOG2360|consen 204 LPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVS-IVESVEGDFLNT-ATPE- 280 (413)
T ss_pred chhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCC-ccccccccccCC-CCcc-
Confidence 3345555556789999999999999999998876799999999999999999999999976 677778888764 2210
Q ss_pred cCCCCCceeEEEEeCC
Q 029414 97 YSENEGSFDYAFVDAD 112 (194)
Q Consensus 97 ~~~~~~~fD~i~id~~ 112 (194)
.-+..-.|++|+.
T Consensus 281 ---~~~~v~~iL~Dps 293 (413)
T KOG2360|consen 281 ---KFRDVTYILVDPS 293 (413)
T ss_pred ---cccceeEEEeCCC
Confidence 1245677777753
No 334
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=93.90 E-value=0.13 Score=41.07 Aligned_cols=94 Identities=18% Similarity=0.282 Sum_probs=60.1
Q ss_pred HHHHHHHHHcC-C-CeE---EEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414 16 QLMAMLLRLVN-A-KKT---IEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 89 (194)
Q Consensus 16 ~~l~~l~~~~~-~-~~v---LeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 89 (194)
.++..|+...+ . .++ +|||+ |.++++-+.... .+...+++|++.-..+.|++++.++++...+.+++-....
T Consensus 87 hwI~DLLss~q~~k~~i~~GiDIgt--gasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~k 164 (419)
T KOG2912|consen 87 HWIEDLLSSQQSDKSTIRRGIDIGT--GASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQK 164 (419)
T ss_pred HHHHHHhhcccCCCcceeeeeeccC--chhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchh
Confidence 44455554432 2 233 57766 666666554432 2567899999999999999999999999889888876544
Q ss_pred H-HHHHhhcCCCCCceeEEEEeCC
Q 029414 90 V-LDQLLKYSENEGSFDYAFVDAD 112 (194)
Q Consensus 90 ~-~~~~~~~~~~~~~fD~i~id~~ 112 (194)
. +...... ..+..||++.++++
T Consensus 165 tll~d~~~~-~~e~~ydFcMcNPP 187 (419)
T KOG2912|consen 165 TLLMDALKE-ESEIIYDFCMCNPP 187 (419)
T ss_pred hcchhhhcc-CccceeeEEecCCc
Confidence 2 2222111 11234888877654
No 335
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=93.76 E-value=1.2 Score=36.00 Aligned_cols=101 Identities=20% Similarity=0.227 Sum_probs=62.7
Q ss_pred HcCCCeEEEEcccc--cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414 24 LVNAKKTIEIGVFT--GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 101 (194)
Q Consensus 24 ~~~~~~vLeiG~G~--G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 101 (194)
...+++||-.|... |..++.||+... ..++++-.+++..+.+ ...+-+.-+.+...|..+...++. ..
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G--~~~v~~~~s~~k~~~~----~~lGAd~vi~y~~~~~~~~v~~~t----~g 209 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALG--ATVVAVVSSSEKLELL----KELGADHVINYREEDFVEQVRELT----GG 209 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcC--CcEEEEecCHHHHHHH----HhcCCCEEEcCCcccHHHHHHHHc----CC
Confidence 45678999999554 557778888864 3666665555444433 334544334455555555555542 12
Q ss_pred CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414 102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 138 (194)
Q Consensus 102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 138 (194)
..+|+|+-.. -...+......|+++|.++.-..
T Consensus 210 ~gvDvv~D~v----G~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 210 KGVDVVLDTV----GGDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred CCceEEEECC----CHHHHHHHHHHhccCCEEEEEec
Confidence 4699887532 23456667899999999998544
No 336
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.72 E-value=1.5 Score=34.22 Aligned_cols=99 Identities=18% Similarity=0.188 Sum_probs=57.4
Q ss_pred CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414 26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f 104 (194)
++++||-+|+|. |..+..+|+... ..+|+.+|.+++..+.+++ .+...-+.. .+..+...... ....+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~--~~~~~~~~~~~----~~~g~ 188 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAG-AARVVAADPSPDRRELALS----FGATALAEP--EVLAERQGGLQ----NGRGV 188 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCcEecCc--hhhHHHHHHHh----CCCCC
Confidence 567899888753 445566777643 2348889988877776655 343211111 11112222221 12468
Q ss_pred eEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414 105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 138 (194)
Q Consensus 105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 138 (194)
|+++-... ....++.+.+.++++|.++.-..
T Consensus 189 d~vid~~G---~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 189 DVALEFSG---ATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred CEEEECCC---ChHHHHHHHHHhcCCCEEEEecc
Confidence 97764221 23456778899999999997543
No 337
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=93.65 E-value=0.22 Score=43.16 Aligned_cols=96 Identities=17% Similarity=0.164 Sum_probs=63.4
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH-----HHHHHhhcC
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-----VLDQLLKYS 98 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~~~~~~~ 98 (194)
+.+.+.|||+||..|.+.--.+..+|.++.|+++|+-|-. . .+++.-++.|... .+.....
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p-~~~c~t~v~dIttd~cr~~l~k~l~-- 107 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------P-IPNCDTLVEDITTDECRSKLRKILK-- 107 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------c-CCccchhhhhhhHHHHHHHHHHHHH--
Confidence 4467889999999999999999999988999999997721 1 1244333333221 1122211
Q ss_pred CCCCceeEEEEeCCcc--------------ccHHHHHHHHhcccCCeEEEE
Q 029414 99 ENEGSFDYAFVDADKD--------------NYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 99 ~~~~~fD~i~id~~~~--------------~~~~~~~~~~~~L~~gG~lv~ 135 (194)
.-+.|+|+-|+.+. -....++.+...|+.||.++.
T Consensus 108 --t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvt 156 (780)
T KOG1098|consen 108 --TWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVT 156 (780)
T ss_pred --hCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccc
Confidence 24569999987521 123446667788999999554
No 338
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=93.59 E-value=0.073 Score=40.07 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=35.4
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCC-CEEEEEeCCcchHHhHHHHHH
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPED-GQITAIDVNRETYEIGLPIIK 72 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~-~~v~~iD~~~~~~~~a~~~~~ 72 (194)
.|-++.|-.||.|+....+....... ..|++.|++++.++.|++|+.
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 45689999999999877776655422 579999999999998887763
No 339
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=93.55 E-value=0.78 Score=31.61 Aligned_cols=94 Identities=16% Similarity=0.105 Sum_probs=49.2
Q ss_pred HHHHHHcCCCeEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhc
Q 029414 19 AMLLRLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY 97 (194)
Q Consensus 19 ~~l~~~~~~~~vLeiG~G~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 97 (194)
..+++..+..+|+|+|.|.=. .+..|.+. +..|+++|+++. .. +..+.++..|..+.-..+
T Consensus 6 ~~ia~~~~~~kiVEVGiG~~~~vA~~L~~~---G~dV~~tDi~~~-------~a-----~~g~~~v~DDif~P~l~i--- 67 (127)
T PF03686_consen 6 EYIARLNNYGKIVEVGIGFNPEVAKKLKER---GFDVIATDINPR-------KA-----PEGVNFVVDDIFNPNLEI--- 67 (127)
T ss_dssp HHHHHHS-SSEEEEET-TT--HHHHHHHHH---S-EEEEE-SS-S----------------STTEE---SSS--HHH---
T ss_pred HHHHHhCCCCcEEEECcCCCHHHHHHHHHc---CCcEEEEECccc-------cc-----ccCcceeeecccCCCHHH---
Confidence 345556677799999998765 45555554 578999999986 11 124566776766532222
Q ss_pred CCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414 98 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 98 ~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
-...|+|+.-.+..+....+-.+.+.+ |.-+++
T Consensus 68 ---Y~~a~lIYSiRPP~El~~~il~lA~~v--~adlii 100 (127)
T PF03686_consen 68 ---YEGADLIYSIRPPPELQPPILELAKKV--GADLII 100 (127)
T ss_dssp ---HTTEEEEEEES--TTSHHHHHHHHHHH--T-EEEE
T ss_pred ---hcCCcEEEEeCCChHHhHHHHHHHHHh--CCCEEE
Confidence 257999998777666655555555543 344444
No 340
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=93.51 E-value=0.36 Score=40.66 Aligned_cols=97 Identities=14% Similarity=0.087 Sum_probs=66.3
Q ss_pred eEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 029414 29 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF 108 (194)
Q Consensus 29 ~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~ 108 (194)
+++.+|||.-..+..+-+.. -..|+.+|.|+..++.....-. .. .+..++...|.....- ++++||.++
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~-~~-~~~~~~~~~d~~~l~f-------edESFdiVI 119 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNA-KE-RPEMQMVEMDMDQLVF-------EDESFDIVI 119 (482)
T ss_pred eeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhccc-cC-CcceEEEEecchhccC-------CCcceeEEE
Confidence 79999999887777776542 2479999999988887765543 12 2467788877755422 257888776
Q ss_pred EeCC-------------ccccHHHHHHHHhcccCCeEEEEe
Q 029414 109 VDAD-------------KDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 109 id~~-------------~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
--+. .......+..+.+.+++||.++.-
T Consensus 120 dkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~sv 160 (482)
T KOG2352|consen 120 DKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISV 160 (482)
T ss_pred ecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence 3221 112334567788999999997664
No 341
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=93.49 E-value=0.5 Score=34.30 Aligned_cols=101 Identities=12% Similarity=0.048 Sum_probs=61.1
Q ss_pred EEcccccHHHHHHHhhCCCCCEEEEEeCC--cchHH---hHHHHHHHcCCCCcEEEEe-cchHHHHHHHhhcCCCCCcee
Q 029414 32 EIGVFTGYSLLLTALTIPEDGQITAIDVN--RETYE---IGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEGSFD 105 (194)
Q Consensus 32 eiG~G~G~~~~~la~~~~~~~~v~~iD~~--~~~~~---~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~~~~~fD 105 (194)
-+|=|.=.+++.|++.......+++.-.+ .+..+ .+.++++...- ..++++. -|+......... ....||
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~-~g~~V~~~VDat~l~~~~~~---~~~~FD 77 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRE-LGVTVLHGVDATKLHKHFRL---KNQRFD 77 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhh-cCCccccCCCCCcccccccc---cCCcCC
Confidence 35666677888898887645566665443 33332 23455555432 2344443 355444333211 247899
Q ss_pred EEEEeCCcc----------------ccHHHHHHHHhcccCCeEEEEe
Q 029414 106 YAFVDADKD----------------NYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 106 ~i~id~~~~----------------~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
.|+.+.+.. -...+|+.+.++|+++|.|.+.
T Consensus 78 rIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT 124 (166)
T PF10354_consen 78 RIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT 124 (166)
T ss_pred EEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 999875521 1356788999999999999984
No 342
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=93.46 E-value=1.3 Score=35.89 Aligned_cols=105 Identities=21% Similarity=0.218 Sum_probs=60.0
Q ss_pred cCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414 25 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 103 (194)
Q Consensus 25 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 103 (194)
.++.+|+-.|+|. |..+..+|+.. +.++++++.+++.++.+++ .+...-+.....+..+........ .....
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~--G~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~-t~~~g 237 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAM--GAAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAF-AKARG 237 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhh-cccCC
Confidence 4577999999854 66677778775 4589999999988877754 243211221111111222211100 01134
Q ss_pred eeE---EEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414 104 FDY---AFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 138 (194)
Q Consensus 104 fD~---i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 138 (194)
+|. +++|... ....++.+.+.|++||.+++-..
T Consensus 238 ~d~~~d~v~d~~g--~~~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 238 LRSTGWKIFECSG--SKPGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred CCCCcCEEEECCC--ChHHHHHHHHHHhcCCeEEEECc
Confidence 551 3445432 23456677899999999998544
No 343
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=93.38 E-value=1 Score=36.07 Aligned_cols=101 Identities=20% Similarity=0.222 Sum_probs=57.7
Q ss_pred HcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414 24 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 102 (194)
Q Consensus 24 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 102 (194)
..++.+||..|+| .|..++.+|+... ..++++++.+++..+.+++ .+...-+.....+..+.+.... ..+
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~----~~~ 235 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELT----GGR 235 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHc----CCC
Confidence 3456788887764 3667777888753 2478888777766655443 2322111112222223222221 125
Q ss_pred ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
.+|+++ |.... ...+..+++.|+++|.++.-
T Consensus 236 ~~d~vl-d~~g~--~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 236 GVDCVI-EAVGF--EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred CCcEEE-EccCC--HHHHHHHHHHhhcCCEEEEE
Confidence 699777 33221 24677788999999998864
No 344
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=93.15 E-value=2.2 Score=34.77 Aligned_cols=101 Identities=20% Similarity=0.285 Sum_probs=58.8
Q ss_pred HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe--cchHHHHHHHhhcCCC
Q 029414 24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSEN 100 (194)
Q Consensus 24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~~~~ 100 (194)
...+.+||-.|+|. |..++.+|+... ..+|+++|.+++..+.+++ .+...-+.... .+..+.+.++.
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~----- 252 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAK-ASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEIT----- 252 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHh-----
Confidence 44578899998753 456666777653 2379999999988777754 24321111111 11222222221
Q ss_pred CCceeEEEEeCCccccHHHHHHHHhcccCC-eEEEEec
Q 029414 101 EGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDN 137 (194)
Q Consensus 101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~ 137 (194)
.+.+|+++- ... ....+..+++.++++ |.++.-.
T Consensus 253 ~~g~d~vid-~~G--~~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 253 DGGVDYSFE-CIG--NVNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred CCCCCEEEE-CCC--CHHHHHHHHHHhhcCCCeEEEEe
Confidence 236897763 321 134567778899886 9887643
No 345
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.14 E-value=0.92 Score=36.74 Aligned_cols=96 Identities=14% Similarity=0.140 Sum_probs=56.8
Q ss_pred cCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeC---CcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCC
Q 029414 25 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDV---NRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN 100 (194)
Q Consensus 25 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~---~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 100 (194)
.++.+||-+|+|. |..+..+|+.. +.++++++. +++..+.++ +.+.. .+.....+..+ . ..
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~----~~Ga~-~v~~~~~~~~~-~-~~------ 235 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVE----ELGAT-YVNSSKTPVAE-V-KL------ 235 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHH----HcCCE-EecCCccchhh-h-hh------
Confidence 3567899998863 55667777775 458999887 455555444 34432 12111111111 1 11
Q ss_pred CCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414 101 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 138 (194)
Q Consensus 101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 138 (194)
.+.+|+||-.... ...+..+.+.++++|.+++-..
T Consensus 236 ~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 236 VGEFDLIIEATGV---PPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred cCCCCEEEECcCC---HHHHHHHHHHccCCcEEEEEec
Confidence 2569977643322 2356778899999999987543
No 346
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=92.88 E-value=0.55 Score=33.57 Aligned_cols=95 Identities=18% Similarity=0.099 Sum_probs=58.4
Q ss_pred eEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHH------cCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414 29 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK------AGVDHKINFIESEALSVLDQLLKYSENEG 102 (194)
Q Consensus 29 ~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~------~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 102 (194)
+|.-+|+|.+..++....... +.+|+....+++.++..++.-.. ..++.++.+ ..|..+.+ .
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~----------~ 68 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-GHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL----------E 68 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-TEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH----------T
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh----------C
Confidence 366788887765554332222 45899999998777766654321 112234544 34443332 4
Q ss_pred ceeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414 103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
.-|+|++.-+......+++.+.+.++++-.++.
T Consensus 69 ~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~ 101 (157)
T PF01210_consen 69 DADIIIIAVPSQAHREVLEQLAPYLKKGQIIIS 101 (157)
T ss_dssp T-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred cccEEEecccHHHHHHHHHHHhhccCCCCEEEE
Confidence 579999987777778899999999987777776
No 347
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=92.78 E-value=2.8 Score=34.13 Aligned_cols=102 Identities=19% Similarity=0.278 Sum_probs=59.2
Q ss_pred HcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec--chHHHHHHHhhcCCC
Q 029414 24 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYSEN 100 (194)
Q Consensus 24 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~~~~~~~~~~~ 100 (194)
..++.+||-.|+| .|..+..+|+... ..++++++.+++..+.+++ .+...-+..... +..+.+..+.
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G-~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~----- 253 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAG-ASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMT----- 253 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHh-----
Confidence 4567889988864 2445566777653 2379999999988776653 343211211111 1222222321
Q ss_pred CCceeEEEEeCCccccHHHHHHHHhcccCC-eEEEEecc
Q 029414 101 EGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT 138 (194)
Q Consensus 101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~ 138 (194)
.+.+|+|+- ... ....+..+.+.++++ |.++.-..
T Consensus 254 ~~g~d~vid-~~g--~~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 254 DGGVDYTFE-CIG--NVKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred CCCCcEEEE-CCC--ChHHHHHHHHhhccCCCeEEEEcc
Confidence 236997764 321 124567788999887 88887543
No 348
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=92.76 E-value=4.3 Score=33.65 Aligned_cols=122 Identities=20% Similarity=0.242 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CcchHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414 11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV-NRETYEIGLPIIKKAGVDHKINFIESEALS 89 (194)
Q Consensus 11 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 89 (194)
+|-...+-..++.+..+..++-..+|.+..+..+...++++.+++..+. -.......++.+...++ .+.++..+..+
T Consensus 54 nPt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv--~v~~~d~~d~~ 131 (386)
T PF01053_consen 54 NPTVRALEQRLAALEGGEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGV--EVTFVDPTDLE 131 (386)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTS--EEEEESTTSHH
T ss_pred cccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCc--EEEEeCchhHH
Confidence 4556666667777778888999999998887666666766788888764 33455556666666665 46666553334
Q ss_pred HHHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccCCe--EEEEeccc
Q 029414 90 VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGG--IAVYDNTL 139 (194)
Q Consensus 90 ~~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~gG--~lv~~~~~ 139 (194)
.+.... .+.-.+||+..+ +.-....++.+.++.+..| .+++||+.
T Consensus 132 ~l~~~l-----~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~ 180 (386)
T PF01053_consen 132 ALEAAL-----RPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTF 180 (386)
T ss_dssp HHHHHH-----CTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTT
T ss_pred HHHhhc-----cccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccc
Confidence 333322 457899999865 2223344555656665554 56666654
No 349
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=92.71 E-value=1.9 Score=35.02 Aligned_cols=104 Identities=22% Similarity=0.304 Sum_probs=66.5
Q ss_pred HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec-chHHHHHHHhhcCCCC
Q 029414 24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENE 101 (194)
Q Consensus 24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~~ 101 (194)
..++.+|.-+|+|. |..++.-|.... ..+++++|++++.++.|++. |..+-+.-... |..+....+. .
T Consensus 183 v~~G~tvaV~GlGgVGlaaI~gA~~ag-A~~IiAvD~~~~Kl~~A~~f----GAT~~vn~~~~~~vv~~i~~~T-----~ 252 (366)
T COG1062 183 VEPGDTVAVFGLGGVGLAAIQGAKAAG-AGRIIAVDINPEKLELAKKF----GATHFVNPKEVDDVVEAIVELT-----D 252 (366)
T ss_pred CCCCCeEEEEeccHhHHHHHHHHHHcC-CceEEEEeCCHHHHHHHHhc----CCceeecchhhhhHHHHHHHhc-----C
Confidence 45677899999874 666666676655 78999999999999887764 43322222211 3444444442 3
Q ss_pred CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecccc
Q 029414 102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW 140 (194)
Q Consensus 102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 140 (194)
+..|..|--. .....++.++..++++|..++-.+.-
T Consensus 253 gG~d~~~e~~---G~~~~~~~al~~~~~~G~~v~iGv~~ 288 (366)
T COG1062 253 GGADYAFECV---GNVEVMRQALEATHRGGTSVIIGVAG 288 (366)
T ss_pred CCCCEEEEcc---CCHHHHHHHHHHHhcCCeEEEEecCC
Confidence 4678776432 22236777778888898888755433
No 350
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=92.54 E-value=0.76 Score=36.52 Aligned_cols=87 Identities=13% Similarity=0.090 Sum_probs=53.1
Q ss_pred CCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414 26 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 26 ~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f 104 (194)
+++++|-+|+| .|..++.+|+..+ ...++++|.+++.++.+++. . ++ |..+. . ...+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~--~-------~~g~ 201 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAG-GSPPAVWETNPRRRDGATGY----E------VL--DPEKD--P-------RRDY 201 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHhhhhc----c------cc--Chhhc--c-------CCCC
Confidence 55688988875 3566677777754 33477788877666554431 1 11 11110 1 2468
Q ss_pred eEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414 105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
|+|| |+.. ....++.+.+.++++|.+++-.
T Consensus 202 Dvvi-d~~G--~~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 202 RAIY-DASG--DPSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred CEEE-ECCC--CHHHHHHHHHhhhcCcEEEEEe
Confidence 9776 4322 2235678889999999999754
No 351
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=92.53 E-value=1 Score=37.37 Aligned_cols=102 Identities=20% Similarity=0.214 Sum_probs=60.7
Q ss_pred cCCCeEEEEc--ccccHHHHHHHhhCCC-CCEEEEEeCCcchHHhHHHHHHHc----CCCCcEEEEe----cchHHHHHH
Q 029414 25 VNAKKTIEIG--VFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKA----GVDHKINFIE----SEALSVLDQ 93 (194)
Q Consensus 25 ~~~~~vLeiG--~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~----~~~~~v~~~~----~d~~~~~~~ 93 (194)
.++.+|+-+| .+.|..+..+|+.... ..+++++|.+++.++.+++.+... |. ...++. .+..+.+..
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga--~~~~i~~~~~~~~~~~v~~ 251 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI--ELLYVNPATIDDLHATLME 251 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc--eEEEECCCccccHHHHHHH
Confidence 3457888887 3367777778876421 237999999999998888753211 11 111221 122233333
Q ss_pred HhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414 94 LLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 94 ~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
+. ....+|+++..... ...+..+.+.++++|.+++
T Consensus 252 ~t----~g~g~D~vid~~g~---~~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 252 LT----GGQGFDDVFVFVPV---PELVEEADTLLAPDGCLNF 286 (410)
T ss_pred Hh----CCCCCCEEEEcCCC---HHHHHHHHHHhccCCeEEE
Confidence 21 12469988764322 3456778899998886654
No 352
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=92.42 E-value=0.54 Score=38.24 Aligned_cols=48 Identities=21% Similarity=0.061 Sum_probs=38.3
Q ss_pred CCeEEEEcccccHHHHHHHhhCC-------CCCEEEEEeCCcchHHhHHHHHHHc
Q 029414 27 AKKTIEIGVFTGYSLLLTALTIP-------EDGQITAIDVNRETYEIGLPIIKKA 74 (194)
Q Consensus 27 ~~~vLeiG~G~G~~~~~la~~~~-------~~~~v~~iD~~~~~~~~a~~~~~~~ 74 (194)
+-.++|+|+|.|.....+++... ...++..+|+|++....=|+.++..
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 35799999999999888776551 2578999999999888777777654
No 353
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=92.41 E-value=0.43 Score=30.75 Aligned_cols=86 Identities=10% Similarity=0.022 Sum_probs=51.9
Q ss_pred EEEEcccccHHHHHHHhhCCC-C---CEEE-EEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414 30 TIEIGVFTGYSLLLTALTIPE-D---GQIT-AIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 30 vLeiG~G~G~~~~~la~~~~~-~---~~v~-~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f 104 (194)
|.=||+ |..+..++..+-. + .++. +.+.+++..+..++.+ + +.+...+..+... .-
T Consensus 2 I~iIG~--G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~---~----~~~~~~~~~~~~~----------~a 62 (96)
T PF03807_consen 2 IGIIGA--GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY---G----VQATADDNEEAAQ----------EA 62 (96)
T ss_dssp EEEEST--SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC---T----TEEESEEHHHHHH----------HT
T ss_pred EEEECC--CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh---c----cccccCChHHhhc----------cC
Confidence 445666 4444444433311 2 5777 4499988777666553 2 4444445555543 36
Q ss_pred eEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414 105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
|+|++...+....+.++.+ ..+.++.+++-
T Consensus 63 dvvilav~p~~~~~v~~~i-~~~~~~~~vis 92 (96)
T PF03807_consen 63 DVVILAVKPQQLPEVLSEI-PHLLKGKLVIS 92 (96)
T ss_dssp SEEEE-S-GGGHHHHHHHH-HHHHTTSEEEE
T ss_pred CEEEEEECHHHHHHHHHHH-hhccCCCEEEE
Confidence 9999988888888888888 66666666653
No 354
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=92.38 E-value=1.4 Score=36.45 Aligned_cols=106 Identities=18% Similarity=0.204 Sum_probs=61.4
Q ss_pred CeEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcC--------
Q 029414 28 KKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS-------- 98 (194)
Q Consensus 28 ~~vLeiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~-------- 98 (194)
.+|--+|- |+.++.+|..+.. +.+|+++|+++..++..++ | ...+..-+..+.+.......
T Consensus 10 ~~I~ViGL--GYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-----G---~~~i~e~~~~~~v~~~v~~g~lraTtd~ 79 (436)
T COG0677 10 ATIGVIGL--GYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR-----G---ESYIEEPDLDEVVKEAVESGKLRATTDP 79 (436)
T ss_pred eEEEEEcc--ccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC-----C---cceeecCcHHHHHHHHHhcCCceEecCh
Confidence 56666766 6666655554432 4789999999977765432 1 23333333333222221110
Q ss_pred CCCCceeEEEEeCC------c----cccHHHHHHHHhcccCCeEEEEeccccccc
Q 029414 99 ENEGSFDYAFVDAD------K----DNYCNYHERLMKLLKVGGIAVYDNTLWGGT 143 (194)
Q Consensus 99 ~~~~~fD~i~id~~------~----~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~ 143 (194)
.+...-|++++..+ . +......+.+.+.|++|-++++..+.++|.
T Consensus 80 ~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGT 134 (436)
T COG0677 80 EELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGT 134 (436)
T ss_pred hhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCc
Confidence 01125677766533 1 122344566678999999999999888884
No 355
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.36 E-value=0.91 Score=36.24 Aligned_cols=98 Identities=10% Similarity=0.008 Sum_probs=55.2
Q ss_pred CeEEEEcccc--cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414 28 KKTIEIGVFT--GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 105 (194)
Q Consensus 28 ~~vLeiG~G~--G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD 105 (194)
.+|+-+|+|. |+.+..|++. +..|+.++.+++.++..++. .| +.+.........+.........+.||
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~---G~~V~lv~r~~~~~~~i~~~---~G----l~i~~~g~~~~~~~~~~~~~~~~~~D 72 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA---GLPVRLILRDRQRLAAYQQA---GG----LTLVEQGQASLYAIPAETADAAEPIH 72 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC---CCCeEEEEechHHHHHHhhc---CC----eEEeeCCcceeeccCCCCcccccccC
Confidence 4688899874 4456666653 45788888876555544431 12 11111000000000000001135799
Q ss_pred EEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414 106 YAFVDADKDNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 106 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
+|++.....+..+.++.+.+.+.++..+++
T Consensus 73 ~viv~vK~~~~~~al~~l~~~l~~~t~vv~ 102 (305)
T PRK05708 73 RLLLACKAYDAEPAVASLAHRLAPGAELLL 102 (305)
T ss_pred EEEEECCHHhHHHHHHHHHhhCCCCCEEEE
Confidence 999976655667788888899999987654
No 356
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=92.14 E-value=3 Score=33.32 Aligned_cols=101 Identities=18% Similarity=0.267 Sum_probs=60.8
Q ss_pred HHcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414 23 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 101 (194)
Q Consensus 23 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 101 (194)
...++.+||-.|+|. |..++.+|+.. +.+++++..+++..+.+++ .+...-+.....+..+.+..+. ..
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~----~~ 225 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELT----DG 225 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHh----CC
Confidence 344677899998764 66777788874 5788888877776665533 2322112222223323333321 12
Q ss_pred CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
..+|+++-.... ...+..+++.|+++|.++.-
T Consensus 226 ~~vd~vld~~g~---~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 226 EGADVVIDATGN---PASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred CCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEE
Confidence 458988754221 24567788999999998863
No 357
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=92.07 E-value=3 Score=31.15 Aligned_cols=81 Identities=16% Similarity=0.189 Sum_probs=43.5
Q ss_pred cCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc-------------------chHHhHHHHHHHcCCCCcEEEEe
Q 029414 25 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIE 84 (194)
Q Consensus 25 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~ 84 (194)
.+..+|+-+|||. |...+..+...+ -++++.+|.+. ...+.+++++.+....-+++.+.
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~G-v~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~ 97 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAG-VGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALK 97 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcC-CCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEeh
Confidence 3568899999984 443333333322 47899999873 22344555555543222344343
Q ss_pred cchHH-HHHHHhhcCCCCCceeEEEEeCC
Q 029414 85 SEALS-VLDQLLKYSENEGSFDYAFVDAD 112 (194)
Q Consensus 85 ~d~~~-~~~~~~~~~~~~~~fD~i~id~~ 112 (194)
..... .+..+ ...+|+|+...+
T Consensus 98 ~~i~~~~~~~~------~~~~D~Vi~~~d 120 (202)
T TIGR02356 98 ERVTAENLELL------INNVDLVLDCTD 120 (202)
T ss_pred hcCCHHHHHHH------HhCCCEEEECCC
Confidence 33322 22333 257998876544
No 358
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=91.74 E-value=2.5 Score=33.94 Aligned_cols=92 Identities=14% Similarity=0.084 Sum_probs=57.1
Q ss_pred HcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414 24 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 102 (194)
Q Consensus 24 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 102 (194)
..++.+||-.|+| .|..+..+|+.. +.++++++.+++..+.+++ .|... ++. ..+ . ..+
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~----~Ga~~---vi~--~~~---~------~~~ 222 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALA----LGAAS---AGG--AYD---T------PPE 222 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----hCCce---ecc--ccc---c------Ccc
Confidence 3457799999864 344556677764 5689999998887766655 35331 111 000 0 024
Q ss_pred ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414 103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 138 (194)
Q Consensus 103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 138 (194)
.+|+++..... ...+..+.+.|++||.+++-..
T Consensus 223 ~~d~~i~~~~~---~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 223 PLDAAILFAPA---GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred cceEEEECCCc---HHHHHHHHHhhCCCcEEEEEec
Confidence 57876543222 2467888899999999988543
No 359
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=91.67 E-value=3.9 Score=32.92 Aligned_cols=101 Identities=16% Similarity=0.185 Sum_probs=58.7
Q ss_pred HcCCCeEEEEccc-ccHHHHHHHhhCCCCC-EEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414 24 LVNAKKTIEIGVF-TGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 101 (194)
Q Consensus 24 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 101 (194)
..++.+||-.|+| .|..+..+|+.. +. ++++++.+++..+.+++ .+...-+.....+..+.+.... ..
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~--G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~----~~ 239 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAA--GASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLT----GG 239 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHh----CC
Confidence 3456788888764 244555667664 44 78899888887776644 2432112222223333333321 12
Q ss_pred CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414 102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
+.+|+++-.... ...++.+++.|+++|.++.-.
T Consensus 240 ~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 240 GGVDVSFDCAGV---QATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred CCCCEEEECCCC---HHHHHHHHHhccCCCEEEEEc
Confidence 359987743221 235677889999999998744
No 360
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=91.67 E-value=2.7 Score=34.23 Aligned_cols=100 Identities=19% Similarity=0.216 Sum_probs=58.2
Q ss_pred HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414 24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 102 (194)
Q Consensus 24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 102 (194)
..++++||-.|+|. |..+..+|+... ..++++++.+++..+.+++ .+...-+.....+..+.+.... ..
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~~~~~----~g~~~~i~~~~~~~~~~v~~~~-----~~ 253 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDIVDSRLELAKE----LGATHVINPKEEDLVAAIREIT-----GG 253 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCcEEecCCCcCHHHHHHHHh-----CC
Confidence 34567888887643 556667777754 3369999998877665543 2322111111112223233321 24
Q ss_pred ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
.+|+++-.... ...+..+++.++++|.++.-
T Consensus 254 ~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 254 GVDYALDTTGV---PAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred CCcEEEECCCC---cHHHHHHHHHhccCCEEEEe
Confidence 69977643221 23567788999999998864
No 361
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=91.61 E-value=3 Score=33.28 Aligned_cols=99 Identities=18% Similarity=0.215 Sum_probs=59.5
Q ss_pred HcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe-cchHHHHHHHhhcCCCC
Q 029414 24 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENE 101 (194)
Q Consensus 24 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~~~ 101 (194)
..++.+||-.|+| .|..+..+|+... +.++++++.+++..+.+++ .+...-+.... .+..+.+... .
T Consensus 160 ~~~g~~vlV~g~g~vG~~~~~la~~~~-g~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~v~~~------~ 228 (338)
T PRK09422 160 IKPGQWIAIYGAGGLGNLALQYAKNVF-NAKVIAVDINDDKLALAKE----VGADLTINSKRVEDVAKIIQEK------T 228 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhC-CCeEEEEeCChHHHHHHHH----cCCcEEecccccccHHHHHHHh------c
Confidence 4456788888853 3456666777532 5689999999888777743 24321111111 1222222222 2
Q ss_pred CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
+.+|.++.+... ...++.+++.|+++|.++.-
T Consensus 229 ~~~d~vi~~~~~---~~~~~~~~~~l~~~G~~v~~ 260 (338)
T PRK09422 229 GGAHAAVVTAVA---KAAFNQAVDAVRAGGRVVAV 260 (338)
T ss_pred CCCcEEEEeCCC---HHHHHHHHHhccCCCEEEEE
Confidence 358877766432 34578889999999999863
No 362
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=91.60 E-value=2.5 Score=34.97 Aligned_cols=105 Identities=15% Similarity=0.161 Sum_probs=59.7
Q ss_pred HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe-cchHHHHHHHhhcCCCC
Q 029414 24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENE 101 (194)
Q Consensus 24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~~~ 101 (194)
...+++||-.|+|. |..++.+|+... -..++.+|.+++.++.+++ .+.. .+.... .+..+.+..+. ..
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~G-a~~vi~~d~~~~r~~~a~~----~Ga~-~v~~~~~~~~~~~v~~~~----~~ 252 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLG-AAVVIVGDLNPARLAQARS----FGCE-TVDLSKDATLPEQIEQIL----GE 252 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHH----cCCe-EEecCCcccHHHHHHHHc----CC
Confidence 44567787777752 455566777653 3346667888777777665 2432 111111 12323333321 12
Q ss_pred CceeEEEEeCCccc-----------cHHHHHHHHhcccCCeEEEEecc
Q 029414 102 GSFDYAFVDADKDN-----------YCNYHERLMKLLKVGGIAVYDNT 138 (194)
Q Consensus 102 ~~fD~i~id~~~~~-----------~~~~~~~~~~~L~~gG~lv~~~~ 138 (194)
..+|+++--...+. ....++.+.+.+++||.+++-..
T Consensus 253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 253 PEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 46897764322211 12468888999999999998544
No 363
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=91.55 E-value=1.2 Score=35.94 Aligned_cols=99 Identities=13% Similarity=-0.020 Sum_probs=65.5
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC-cee
Q 029414 27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG-SFD 105 (194)
Q Consensus 27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~-~fD 105 (194)
..+++|+.||.|...+.|....- .-+.++|+++.+.+.-+.++.. ..+...|..+....-. .. .+|
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf--~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~-----~~~~~D 69 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGF--EIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEAL-----RKSDVD 69 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCC--eEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhc-----cccCCC
Confidence 35799999999999988877531 3577899999998888877642 4555666665433321 12 789
Q ss_pred EEEEeCCc----------------cccHHHHHHHHhcccCCeEEEEeccc
Q 029414 106 YAFVDADK----------------DNYCNYHERLMKLLKVGGIAVYDNTL 139 (194)
Q Consensus 106 ~i~id~~~----------------~~~~~~~~~~~~~L~~gG~lv~~~~~ 139 (194)
+++-..+. ....-.+..+...++| -.+++.|+-
T Consensus 70 vligGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~ 118 (328)
T COG0270 70 VLIGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVK 118 (328)
T ss_pred EEEeCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCc
Confidence 88755331 1111223455678888 788888864
No 364
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=91.51 E-value=3.6 Score=33.42 Aligned_cols=79 Identities=15% Similarity=0.131 Sum_probs=46.0
Q ss_pred CCCeEEEEcccc-cHHH-HHHHhhCCCCCEEEEEeCCc---------------------chHHhHHHHHHHcCCCCcEEE
Q 029414 26 NAKKTIEIGVFT-GYSL-LLTALTIPEDGQITAIDVNR---------------------ETYEIGLPIIKKAGVDHKINF 82 (194)
Q Consensus 26 ~~~~vLeiG~G~-G~~~-~~la~~~~~~~~v~~iD~~~---------------------~~~~~a~~~~~~~~~~~~v~~ 82 (194)
+.++|+-+|||. |... ..|+.. + -++++.+|.+. ...+.+++++.+.+..-+++.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~a-G-vg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~ 100 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRA-G-IGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVP 100 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc-C-CCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEE
Confidence 567899999984 4433 334433 2 46899999874 123455666666543334555
Q ss_pred EecchH-HHHHHHhhcCCCCCceeEEEEeCC
Q 029414 83 IESEAL-SVLDQLLKYSENEGSFDYAFVDAD 112 (194)
Q Consensus 83 ~~~d~~-~~~~~~~~~~~~~~~fD~i~id~~ 112 (194)
+..+.. +.+..+ ...+|+|+...+
T Consensus 101 ~~~~~~~~~~~~~------~~~~DlVid~~D 125 (338)
T PRK12475 101 VVTDVTVEELEEL------VKEVDLIIDATD 125 (338)
T ss_pred EeccCCHHHHHHH------hcCCCEEEEcCC
Confidence 555543 233343 256998876554
No 365
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=91.48 E-value=1.6 Score=36.00 Aligned_cols=109 Identities=12% Similarity=0.041 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCc-EEEEecchHHHH
Q 029414 13 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK-INFIESEALSVL 91 (194)
Q Consensus 13 ~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~ 91 (194)
.-+-+|..+.......+|+-++-..|..+.+++...+ +.+--+--.....++|++.++++.. +++.... +
T Consensus 31 ade~ll~~~~~~~~~~~~~i~nd~fGal~~~l~~~~~-----~~~~ds~~~~~~~~~n~~~n~~~~~~~~~~~~~--~-- 101 (378)
T PRK15001 31 ADEYLLQQLDDTEIRGPVLILNDAFGALSCALAEHKP-----YSIGDSYISELATRENLRLNGIDESSVKFLDST--A-- 101 (378)
T ss_pred HHHHHHHHHhhcccCCCEEEEcCchhHHHHHHHhCCC-----CeeehHHHHHHHHHHHHHHcCCCcccceeeccc--c--
Confidence 3445566665543334799999999999999996432 2221112233456788888887633 5555322 2
Q ss_pred HHHhhcCCCCCceeEEEEeCCcc--ccHHHHHHHHhcccCCeEEEEec
Q 029414 92 DQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 92 ~~~~~~~~~~~~fD~i~id~~~~--~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
.+ .+.+|+|++-.++. .....+..+.+.|+||+.|++-.
T Consensus 102 -~~------~~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g~ 142 (378)
T PRK15001 102 -DY------PQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGA 142 (378)
T ss_pred -cc------cCCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 22 25699999887643 33444667778999999988744
No 366
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=91.47 E-value=1 Score=35.18 Aligned_cols=73 Identities=16% Similarity=0.123 Sum_probs=45.8
Q ss_pred HHHHHHHH---HcCCCeEEEEcccccHHHHHHHhhCC----CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414 16 QLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIP----EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 88 (194)
Q Consensus 16 ~~l~~l~~---~~~~~~vLeiG~G~G~~~~~la~~~~----~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 88 (194)
.++..+.. ..+...++|+|||.|..+.+++..++ +...++.||...... .+-..+........++-+..|..
T Consensus 5 Sli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~ 83 (259)
T PF05206_consen 5 SLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIK 83 (259)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEee
Confidence 34444444 23556899999999999999999884 257899999866444 33333433321124444555554
Q ss_pred H
Q 029414 89 S 89 (194)
Q Consensus 89 ~ 89 (194)
+
T Consensus 84 d 84 (259)
T PF05206_consen 84 D 84 (259)
T ss_pred c
Confidence 4
No 367
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=91.35 E-value=4.1 Score=32.61 Aligned_cols=101 Identities=20% Similarity=0.251 Sum_probs=56.9
Q ss_pred HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414 24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 102 (194)
Q Consensus 24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 102 (194)
..++.+||-.|+|. |..+..+|+..+ ..++++++.+++....+++ .+...-+.....+..+.+..+. ...
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~----~~~ 234 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAALLTAQLYS-PSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELT----DGR 234 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHh----CCC
Confidence 34566777766532 334455666543 2678888887766665553 3432222322233323233322 124
Q ss_pred ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
.+|+++ |.. .....++.+++.|+++|.++.-
T Consensus 235 ~~d~vl-d~~--g~~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 235 GVDVVI-EAV--GIPATFELCQELVAPGGHIANV 265 (345)
T ss_pred CCCEEE-ECC--CCHHHHHHHHHhccCCcEEEEe
Confidence 699877 432 2234578888999999999863
No 368
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=91.33 E-value=2.7 Score=29.01 Aligned_cols=79 Identities=20% Similarity=0.244 Sum_probs=47.6
Q ss_pred CCeEEEEccc-ccHHHHH-HHhhCCCCCEEEEEeCCc-------------------chHHhHHHHHHHcCCCCcEEEEec
Q 029414 27 AKKTIEIGVF-TGYSLLL-TALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIES 85 (194)
Q Consensus 27 ~~~vLeiG~G-~G~~~~~-la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~ 85 (194)
..+|+-+|+| .|...+. |+.. + -++++.+|.+. ...+.+++++.+....-+++.+..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~-G-v~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~ 79 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARS-G-VGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPE 79 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHH-T-TSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEES
T ss_pred CCEEEEECcCHHHHHHHHHHHHh-C-CCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeec
Confidence 4689999996 4543333 4443 2 57899998644 123556777776553346777766
Q ss_pred ch-HHHHHHHhhcCCCCCceeEEEEeCCc
Q 029414 86 EA-LSVLDQLLKYSENEGSFDYAFVDADK 113 (194)
Q Consensus 86 d~-~~~~~~~~~~~~~~~~fD~i~id~~~ 113 (194)
+. .+....+. ..+|+|+.....
T Consensus 80 ~~~~~~~~~~~------~~~d~vi~~~d~ 102 (135)
T PF00899_consen 80 KIDEENIEELL------KDYDIVIDCVDS 102 (135)
T ss_dssp HCSHHHHHHHH------HTSSEEEEESSS
T ss_pred ccccccccccc------cCCCEEEEecCC
Confidence 66 33344442 468988876543
No 369
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=91.28 E-value=1.2 Score=35.40 Aligned_cols=94 Identities=15% Similarity=0.064 Sum_probs=60.9
Q ss_pred eEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 029414 29 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF 108 (194)
Q Consensus 29 ~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~ 108 (194)
+++|+.||.|..++.|-.+. -..+.++|+++.+.+.-+.|+. ....+|..++-.... .+.+|+++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l-----~~~~D~l~ 66 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDL-----PKDVDLLI 66 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHH-----HHT-SEEE
T ss_pred cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc--------ccccccccccccccc-----cccceEEE
Confidence 68999999999999998753 2468899999999998888873 677788777533321 11599988
Q ss_pred EeCCc---------------cc--cHHHHHHHHhcccCCeEEEEeccc
Q 029414 109 VDADK---------------DN--YCNYHERLMKLLKVGGIAVYDNTL 139 (194)
Q Consensus 109 id~~~---------------~~--~~~~~~~~~~~L~~gG~lv~~~~~ 139 (194)
...+. .. ...+++ +.+.++| -++++.|+.
T Consensus 67 ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~~-~v~~~~P-k~~~~ENV~ 112 (335)
T PF00145_consen 67 GGPPCQGFSIAGKRKGFDDPRNSLFFEFLR-IVKELKP-KYFLLENVP 112 (335)
T ss_dssp EE---TTTSTTSTHHCCCCHTTSHHHHHHH-HHHHHS--SEEEEEEEG
T ss_pred eccCCceEeccccccccccccchhhHHHHH-HHhhccc-eEEEecccc
Confidence 76430 01 123333 3466788 567778874
No 370
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=91.23 E-value=1.7 Score=31.33 Aligned_cols=94 Identities=17% Similarity=0.229 Sum_probs=52.3
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHh-HHHHHHHcCCCCcEE-EEecchHHHHHHHhhcCCCCCce
Q 029414 27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI-GLPIIKKAGVDHKIN-FIESEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~-a~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~~~~~~~f 104 (194)
+++.+-+|+..-. ...+|.... ..++.++|.++-.++. .+ +++. +... ++...+.. ..++|
T Consensus 2 ~~~g~V~GS~~Pw-vEv~aL~~G-A~~iltveyn~L~i~~~~~---------dr~ssi~p~---df~~~~~~---y~~~f 64 (177)
T PF03269_consen 2 GKSGLVVGSMQPW-VEVMALQHG-AAKILTVEYNKLEIQEEFR---------DRLSSILPV---DFAKNWQK---YAGSF 64 (177)
T ss_pred CceEEEEecCCch-hhHHHHHcC-CceEEEEeecccccCcccc---------cccccccHH---HHHHHHHH---hhccc
Confidence 5678888887443 333444433 5689999987632211 11 1111 1112 22222211 15789
Q ss_pred eEEEEeCC--------------ccccHHHHHHHHhcccCCeEEEEec
Q 029414 105 DYAFVDAD--------------KDNYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 105 D~i~id~~--------------~~~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
|++.+-+. +......+..+...||+||.+++.-
T Consensus 65 D~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 65 DFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGV 111 (177)
T ss_pred hhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEe
Confidence 98753321 2234566777889999999999853
No 371
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=91.21 E-value=3.7 Score=33.37 Aligned_cols=103 Identities=17% Similarity=0.269 Sum_probs=58.1
Q ss_pred HHcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec--chHHHHHHHhhcCC
Q 029414 23 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYSE 99 (194)
Q Consensus 23 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~~~~~~~~~~ 99 (194)
...++.+||-.|+|. |..+..+|+... ..++++++.+++..+.+++ .+...-+..... +..+.+..+.
T Consensus 184 ~~~~g~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~v~~~~---- 254 (369)
T cd08301 184 KVKKGSTVAIFGLGAVGLAVAEGARIRG-ASRIIGVDLNPSKFEQAKK----FGVTEFVNPKDHDKPVQEVIAEMT---- 254 (369)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEcccccchhHHHHHHHHh----
Confidence 345678899888642 345556677643 2379999999887777644 343211211110 1222222221
Q ss_pred CCCceeEEEEeCCccccHHHHHHHHhcccCC-eEEEEecc
Q 029414 100 NEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT 138 (194)
Q Consensus 100 ~~~~fD~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~ 138 (194)
.+.+|+++ |... ....+..+++.++++ |.++.-..
T Consensus 255 -~~~~d~vi-d~~G--~~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 255 -GGGVDYSF-ECTG--NIDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred -CCCCCEEE-ECCC--ChHHHHHHHHHhhcCCCEEEEECc
Confidence 23689665 4321 134566677889996 89887543
No 372
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=91.13 E-value=4 Score=33.21 Aligned_cols=102 Identities=21% Similarity=0.331 Sum_probs=58.2
Q ss_pred HcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec--chHHHHHHHhhcCCC
Q 029414 24 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYSEN 100 (194)
Q Consensus 24 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~~~~~~~~~~~ 100 (194)
..++.+||-+|+| .|..+..+|+... ..+|++++.+++..+.+++ .+...-+..... +..+.+..+.
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~----- 251 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAG-ASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMT----- 251 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHh-----
Confidence 4467889888874 2445566777653 2379999998887777653 343211111111 1122222221
Q ss_pred CCceeEEEEeCCccccHHHHHHHHhcccCC-eEEEEecc
Q 029414 101 EGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT 138 (194)
Q Consensus 101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~ 138 (194)
.+.+|+++- ... ....+..+++.++++ |.++.-..
T Consensus 252 ~~g~d~vid-~~g--~~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 252 GGGVDYSFE-CTG--NADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred CCCCCEEEE-CCC--ChHHHHHHHHhcccCCCEEEEEcC
Confidence 246897773 321 124567788999885 88876443
No 373
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=91.06 E-value=1.1 Score=36.97 Aligned_cols=85 Identities=21% Similarity=0.167 Sum_probs=51.1
Q ss_pred CeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcCCCCCce
Q 029414 28 KKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSF 104 (194)
Q Consensus 28 ~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~~f 104 (194)
++||-||||. |...++...... ..+|+..|.+++..+.+..... .+++..+-|+.+. +..+ -..+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~-d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~l------i~~~ 69 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNG-DGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVAL------IKDF 69 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHH------HhcC
Confidence 5799999953 333333322222 3799999999887777665532 2677777666543 3333 2557
Q ss_pred eEEEEeCCccccHHHHHHHH
Q 029414 105 DYAFVDADKDNYCNYHERLM 124 (194)
Q Consensus 105 D~i~id~~~~~~~~~~~~~~ 124 (194)
|+|+.-.+......+++.|.
T Consensus 70 d~VIn~~p~~~~~~i~ka~i 89 (389)
T COG1748 70 DLVINAAPPFVDLTILKACI 89 (389)
T ss_pred CEEEEeCCchhhHHHHHHHH
Confidence 98887665444445555443
No 374
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=91.03 E-value=6.6 Score=31.42 Aligned_cols=99 Identities=14% Similarity=0.140 Sum_probs=55.3
Q ss_pred cCCCeEEEEccc-ccHHHHHHHhhCCCCCE-EEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414 25 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 102 (194)
Q Consensus 25 ~~~~~vLeiG~G-~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 102 (194)
.++.+|+-.|+| .|..+..+|+.. +.+ +++++.+++..+.+++ .+...-+.....+..+.+..+. ..+
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~--G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~----~~~ 229 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKAS--GAYPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLT----DGE 229 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhc----CCC
Confidence 355677666654 355666677764 444 8888777655554443 2432112222233333333331 135
Q ss_pred ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
.+|+++-.... ...+..+++.|+++|.++.-
T Consensus 230 ~~d~vld~~g~---~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 230 GVDVFLEMSGA---PKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred CCCEEEECCCC---HHHHHHHHHhhcCCCEEEEE
Confidence 68988753221 24567788999999998874
No 375
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=90.98 E-value=3.6 Score=27.94 Aligned_cols=89 Identities=15% Similarity=0.064 Sum_probs=56.4
Q ss_pred HHHHHcCCCeEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcC
Q 029414 20 MLLRLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS 98 (194)
Q Consensus 20 ~l~~~~~~~~vLeiG~G~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 98 (194)
-+++....++|+|+|.|.=. .+..+++. +.-++++|+++.. . +..++++..|....--.+
T Consensus 7 ~iAre~~~gkVvEVGiG~~~~VA~~L~e~---g~dv~atDI~~~~----------a--~~g~~~v~DDitnP~~~i---- 67 (129)
T COG1255 7 YIARENARGKVVEVGIGFFLDVAKRLAER---GFDVLATDINEKT----------A--PEGLRFVVDDITNPNISI---- 67 (129)
T ss_pred HHHHHhcCCcEEEEccchHHHHHHHHHHc---CCcEEEEeccccc----------C--cccceEEEccCCCccHHH----
Confidence 45556677799999997643 45556654 5689999998751 1 135788887765532222
Q ss_pred CCCCceeEEEEeCCccccHHHHHHHHhcccC
Q 029414 99 ENEGSFDYAFVDADKDNYCNYHERLMKLLKV 129 (194)
Q Consensus 99 ~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~ 129 (194)
-...|+|+.-.+.++....+-.+.+.++.
T Consensus 68 --Y~~A~lIYSiRpppEl~~~ildva~aVga 96 (129)
T COG1255 68 --YEGADLIYSIRPPPELQSAILDVAKAVGA 96 (129)
T ss_pred --hhCccceeecCCCHHHHHHHHHHHHhhCC
Confidence 25689999776655555554445455443
No 376
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=90.94 E-value=4.5 Score=32.86 Aligned_cols=100 Identities=21% Similarity=0.241 Sum_probs=56.1
Q ss_pred cCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414 25 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 103 (194)
Q Consensus 25 ~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 103 (194)
.++.+||-.|+| .|..+..+|+..+ ...+++++.+++..+.+++ .+...-+.....+..+.+.... ....
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G-~~~vi~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~----~~~~ 256 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFG-ASPIIAVDVRDEKLAKAKE----LGATHTVNAAKEDAVAAIREIT----GGRG 256 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCceEecCCcccHHHHHHHHh----CCCC
Confidence 456678777664 4556666777643 2338888888776665543 2432111111122222222221 1356
Q ss_pred eeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
+|+|+- ..... ..+..+++.|+++|.++.-
T Consensus 257 ~d~vld-~vg~~--~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 257 VDVVVE-ALGKP--ETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred CCEEEE-eCCCH--HHHHHHHHHHhcCCEEEEE
Confidence 998874 32211 3567788999999998863
No 377
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=90.84 E-value=2.5 Score=34.94 Aligned_cols=110 Identities=15% Similarity=0.143 Sum_probs=74.0
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhH-------HHHHHHcCC-CCcEEEEecchHH--HHHH
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG-------LPIIKKAGV-DHKINFIESEALS--VLDQ 93 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a-------~~~~~~~~~-~~~v~~~~~d~~~--~~~~ 93 (194)
..+...-.|+|+|.|......|.... ...=+++|+.+..-+.+ ++...-+|- +..++.+++++.. ....
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~e 268 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTE 268 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHH
Confidence 44567899999999999888887654 55667888766544333 222233444 3567888888755 2333
Q ss_pred HhhcCCCCCceeEEEEeCCc--cccHHHHHHHHhcccCCeEEEEecccc
Q 029414 94 LLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKVGGIAVYDNTLW 140 (194)
Q Consensus 94 ~~~~~~~~~~fD~i~id~~~--~~~~~~~~~~~~~L~~gG~lv~~~~~~ 140 (194)
+ ...-++||++-.. ++..--++.++..+++|-.|+-...+.
T Consensus 269 I------~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~~L~ 311 (419)
T KOG3924|consen 269 I------QTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSKPLV 311 (419)
T ss_pred H------hhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEecccccc
Confidence 3 3568899988653 333334568889999999999877664
No 378
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=90.82 E-value=0.51 Score=35.89 Aligned_cols=59 Identities=12% Similarity=-0.017 Sum_probs=46.5
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414 27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 89 (194)
Q Consensus 27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 89 (194)
..-|.|||.|.|..+..+..+. -.++..+|.++.++.-.+-..+.+ +.+..+.++|+..
T Consensus 51 ~~~v~eIgPgpggitR~il~a~--~~RL~vVE~D~RFip~LQ~L~EAa--~~~~~IHh~D~LR 109 (326)
T KOG0821|consen 51 NAYVYEIGPGPGGITRSILNAD--VARLLVVEKDTRFIPGLQMLSEAA--PGKLRIHHGDVLR 109 (326)
T ss_pred cceeEEecCCCCchhHHHHhcc--hhheeeeeeccccChHHHHHhhcC--CcceEEeccccce
Confidence 3579999999999999998763 468999999998888777655533 3478888888764
No 379
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=90.70 E-value=7.4 Score=31.66 Aligned_cols=96 Identities=20% Similarity=0.226 Sum_probs=54.2
Q ss_pred cCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414 25 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 103 (194)
Q Consensus 25 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 103 (194)
.++++||-.|+|. |..++.+|+.. +.++++++.+++....+. .+.|.. .++.....+.+... .+.
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~~~~---~~~Ga~---~vi~~~~~~~~~~~------~~~ 247 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKEDEAI---NRLGAD---SFLVSTDPEKMKAA------IGT 247 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchhhhHH---HhCCCc---EEEcCCCHHHHHhh------cCC
Confidence 3567888888752 45666677764 467888887765433222 223432 12211111222222 235
Q ss_pred eeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414 104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
+|+++ |... ....++.+++.++++|.++.-.
T Consensus 248 ~D~vi-d~~g--~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 248 MDYII-DTVS--AVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred CCEEE-ECCC--CHHHHHHHHHHhcCCcEEEEeC
Confidence 89777 4322 2235677889999999998643
No 380
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=90.60 E-value=4.4 Score=30.19 Aligned_cols=80 Identities=15% Similarity=0.162 Sum_probs=43.6
Q ss_pred CCCeEEEEcccc-cHHH-HHHHhhCCCCCEEEEEeCCcc-------------------hHHhHHHHHHHcCCCCcEEEEe
Q 029414 26 NAKKTIEIGVFT-GYSL-LLTALTIPEDGQITAIDVNRE-------------------TYEIGLPIIKKAGVDHKINFIE 84 (194)
Q Consensus 26 ~~~~vLeiG~G~-G~~~-~~la~~~~~~~~v~~iD~~~~-------------------~~~~a~~~~~~~~~~~~v~~~~ 84 (194)
+..+|+-+|||. |... ..|+.. + -++++.+|.+.- ..+.+++++.+.+..-+++...
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~-G-Vg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~ 97 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLS-G-IGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDT 97 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHc-C-CCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEe
Confidence 457899999874 3322 223332 2 478999887532 2344566666554333444444
Q ss_pred cchHHHHHHHhhcCCCCCceeEEEEeCCc
Q 029414 85 SEALSVLDQLLKYSENEGSFDYAFVDADK 113 (194)
Q Consensus 85 ~d~~~~~~~~~~~~~~~~~fD~i~id~~~ 113 (194)
....+..+.+ ...||+|+.....
T Consensus 98 ~~~~~~~~~~------~~~~dvVi~~~~~ 120 (197)
T cd01492 98 DDISEKPEEF------FSQFDVVVATELS 120 (197)
T ss_pred cCccccHHHH------HhCCCEEEECCCC
Confidence 4333322333 2579998876543
No 381
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=90.55 E-value=9.3 Score=31.99 Aligned_cols=105 Identities=17% Similarity=0.189 Sum_probs=56.1
Q ss_pred CeEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhc-----CCCC
Q 029414 28 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY-----SENE 101 (194)
Q Consensus 28 ~~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~-----~~~~ 101 (194)
++|.-||.|. .+..+|..+. .+.+|+++|.+++.++..+. + .+.+...+..+.+...... ....
T Consensus 4 ~kI~VIGlG~--~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~-----g---~~~~~e~~l~~~l~~~~~~g~l~~~~~~ 73 (415)
T PRK11064 4 ETISVIGLGY--IGLPTAAAFASRQKQVIGVDINQHAVDTINR-----G---EIHIVEPDLDMVVKTAVEGGYLRATTTP 73 (415)
T ss_pred cEEEEECcch--hhHHHHHHHHhCCCEEEEEeCCHHHHHHHHC-----C---CCCcCCCCHHHHHHHHhhcCceeeeccc
Confidence 5678888764 3333333321 25789999999987764321 1 1122222222222211000 0001
Q ss_pred CceeEEEEeCCc----------cccHHHHHHHHhcccCCeEEEEecccccc
Q 029414 102 GSFDYAFVDADK----------DNYCNYHERLMKLLKVGGIAVYDNTLWGG 142 (194)
Q Consensus 102 ~~fD~i~id~~~----------~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 142 (194)
+.-|+||+..+. .......+.+.+.+++|.++|...+..+|
T Consensus 74 ~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pg 124 (415)
T PRK11064 74 EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVG 124 (415)
T ss_pred ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence 256888877653 23445567777889988888776655444
No 382
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.48 E-value=4.8 Score=33.38 Aligned_cols=107 Identities=14% Similarity=0.141 Sum_probs=62.9
Q ss_pred CeEEEEc---ccccHHHHHHHhhCCC---CCEEEEEeC-CcchHHhHHHHHHHcCCCCcEEEEecchHHHH----HHHhh
Q 029414 28 KKTIEIG---VFTGYSLLLTALTIPE---DGQITAIDV-NRETYEIGLPIIKKAGVDHKINFIESEALSVL----DQLLK 96 (194)
Q Consensus 28 ~~vLeiG---~G~G~~~~~la~~~~~---~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~ 96 (194)
..|+=+| +|--.+..-+|..+.. ..-++|-|. -+.+.+..+.+..+.++|--...-..|...+. ..+.
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fK- 180 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFK- 180 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHH-
Confidence 3455554 3333444556655532 234677775 44577888888887776522233334443332 2222
Q ss_pred cCCCCCceeEEEEeCC--ccccHHH---HHHHHhcccCCeEEEEeccc
Q 029414 97 YSENEGSFDYAFVDAD--KDNYCNY---HERLMKLLKVGGIAVYDNTL 139 (194)
Q Consensus 97 ~~~~~~~fD~i~id~~--~~~~~~~---~~~~~~~L~~gG~lv~~~~~ 139 (194)
.+.||+|++|-. +..-... +..+.+.++|+-+|.+-|..
T Consensus 181 ----ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDas 224 (483)
T KOG0780|consen 181 ----KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDAS 224 (483)
T ss_pred ----hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecc
Confidence 478999999965 2222333 45566899999988886654
No 383
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=90.18 E-value=6.8 Score=29.81 Aligned_cols=80 Identities=13% Similarity=0.130 Sum_probs=44.8
Q ss_pred CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc-------------------chHHhHHHHHHHcCCCCcEEEEec
Q 029414 26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIES 85 (194)
Q Consensus 26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~ 85 (194)
...+|+-+|||. |...+..+...+ -++++.+|.+. ...+.+++++.+....-+++.+..
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~ 98 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE 98 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence 457899999974 443333333333 57888887644 233455666665543224555544
Q ss_pred ch-HHHHHHHhhcCCCCCceeEEEEeCC
Q 029414 86 EA-LSVLDQLLKYSENEGSFDYAFVDAD 112 (194)
Q Consensus 86 d~-~~~~~~~~~~~~~~~~fD~i~id~~ 112 (194)
.. .+....+ ...+|+|+...+
T Consensus 99 ~i~~~~~~~~------~~~~DvVi~~~d 120 (228)
T cd00757 99 RLDAENAEEL------IAGYDLVLDCTD 120 (228)
T ss_pred eeCHHHHHHH------HhCCCEEEEcCC
Confidence 43 1222333 256999887655
No 384
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=90.15 E-value=7.4 Score=32.39 Aligned_cols=124 Identities=15% Similarity=0.134 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414 10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV-NRETYEIGLPIIKKAGVDHKINFIESEAL 88 (194)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 88 (194)
.++...++-..++.......++-+++|+......+...+.++.+|+..+. .........+.+...+. ++.++..+..
T Consensus 68 ~~p~~~~le~~lA~l~g~~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~--~v~~vd~~d~ 145 (403)
T PRK07810 68 GNPTVSMFEERLRLIEGAEACFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGV--ETVFVDGEDL 145 (403)
T ss_pred CCchHHHHHHHHHHHhCCCcEEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCc--EEEEECCCCH
Confidence 34556677777777777778999999888766655444555777777653 22334444555555554 4555544322
Q ss_pred HHHHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccC-CeEEEEecccc
Q 029414 89 SVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKV-GGIAVYDNTLW 140 (194)
Q Consensus 89 ~~~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~ 140 (194)
+.+.... .+.-.+|++..+ .......++.+.++.+. |-.+++|++..
T Consensus 146 ~~l~~ai-----~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a 195 (403)
T PRK07810 146 SQWEEAL-----SVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFA 195 (403)
T ss_pred HHHHHhc-----CcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCC
Confidence 3333321 234678887643 11111224444444444 44566666643
No 385
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=90.14 E-value=6.1 Score=31.67 Aligned_cols=100 Identities=14% Similarity=0.177 Sum_probs=57.0
Q ss_pred HcCCCeEEEEcccc-cHHHHHHHhhCCCCCE-EEEEeCCcchHHhHHHHHHHcCCCCcEEEEecch---HHHHHHHhhcC
Q 029414 24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA---LSVLDQLLKYS 98 (194)
Q Consensus 24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~~ 98 (194)
..++.+||-.|+|. |..++.+|+.. +.+ ++.++.+++..+.+++ .+...-+.....+. .+.+....
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~--G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~~--- 230 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAF--GATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAELL--- 230 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHHh---
Confidence 44567887777654 66777788875 344 8888887776665543 23221111111121 12222221
Q ss_pred CCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 99 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 99 ~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
....+|+|+-.... ...+...++.|+++|.++.-
T Consensus 231 -~~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 231 -GGKGPDVVIECTGA---ESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred -CCCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEE
Confidence 12459987743221 22567788999999998864
No 386
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=90.11 E-value=4.3 Score=33.32 Aligned_cols=101 Identities=14% Similarity=0.106 Sum_probs=56.0
Q ss_pred cCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec---chHHHHHHHhhcCCC
Q 029414 25 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKYSEN 100 (194)
Q Consensus 25 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~~~~~~~~ 100 (194)
..+.+||-.|+|. |..++.+|+..+ ..++++++.+++..+.+++ .+...-+..... +..+.+..+. .
T Consensus 202 ~~g~~VlV~g~g~vG~~ai~lA~~~G-~~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~~----~ 272 (384)
T cd08265 202 RPGAYVVVYGAGPIGLAAIALAKAAG-ASKVIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEVT----K 272 (384)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHhc----C
Confidence 3566787777642 334555666643 2379999888775544443 354211111111 2222222321 1
Q ss_pred CCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 101 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
...+|+|+ |... .....+..+++.|+++|.++.-
T Consensus 273 g~gvDvvl-d~~g-~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 273 GWGADIQV-EAAG-APPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred CCCCCEEE-ECCC-CcHHHHHHHHHHHHcCCEEEEE
Confidence 24699776 4422 2235677888999999999864
No 387
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=90.04 E-value=5 Score=28.05 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=27.6
Q ss_pred CceeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414 102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
..||+||+.....+..+.++.+.+.+.++..+++
T Consensus 66 ~~~D~viv~vKa~~~~~~l~~l~~~~~~~t~iv~ 99 (151)
T PF02558_consen 66 GPYDLVIVAVKAYQLEQALQSLKPYLDPNTTIVS 99 (151)
T ss_dssp STESEEEE-SSGGGHHHHHHHHCTGEETTEEEEE
T ss_pred CCCcEEEEEecccchHHHHHHHhhccCCCcEEEE
Confidence 7899999987666778889999999999966665
No 388
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=89.90 E-value=8.8 Score=30.72 Aligned_cols=99 Identities=20% Similarity=0.170 Sum_probs=53.8
Q ss_pred cCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414 25 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 103 (194)
Q Consensus 25 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 103 (194)
.++.+||-.|+|. |..+..+|+..+ ..++++++.+++..+.+++ .+...-+.....+.. .+..+. ..+.
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~-~~~~~~----~~~~ 231 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAG-ASLVIASDPNPYRLELAKK----MGADVVINPREEDVV-EVKSVT----DGTG 231 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----hCcceeeCcccccHH-HHHHHc----CCCC
Confidence 3556777766543 556666777653 2268888666655544443 343211111122222 222221 1357
Q ss_pred eeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
+|+++-.... ......+++.|+++|.++.-
T Consensus 232 vd~vld~~g~---~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 232 VDVVLEMSGN---PKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred CCEEEECCCC---HHHHHHHHHHhccCCEEEEE
Confidence 8988753221 23466778999999998863
No 389
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=89.87 E-value=2.8 Score=33.50 Aligned_cols=96 Identities=18% Similarity=0.261 Sum_probs=55.7
Q ss_pred CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414 26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f 104 (194)
++.+||-.|+|. |..+..+|+..+ -.++++++.+++..+.+++ .+.. .++..+... +..+.. ..+.+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G-~~~v~~~~~s~~~~~~~~~----~g~~---~vi~~~~~~-~~~~~~---~~~~v 232 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAG-AAEIVATDLADAPLAVARA----MGAD---ETVNLARDP-LAAYAA---DKGDF 232 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----cCCC---EEEcCCchh-hhhhhc---cCCCc
Confidence 567888888764 566677777653 2278899888776665443 2322 122111111 111111 12459
Q ss_pred eEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
|+++-.... ...++.+++.|+++|.++.-
T Consensus 233 d~vld~~g~---~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 233 DVVFEASGA---PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred cEEEECCCC---HHHHHHHHHHHhcCCEEEEE
Confidence 988753221 23567788999999999863
No 390
>PRK08114 cystathionine beta-lyase; Provisional
Probab=89.72 E-value=11 Score=31.45 Aligned_cols=127 Identities=10% Similarity=0.067 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414 10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV-NRETYEIGLPIIKKAGVDHKINFIESEAL 88 (194)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 88 (194)
.+|-...+=..++.+..+...+-+.+|++.....+...+.++.+|++.+. ........++.+++.|. ++.++.....
T Consensus 60 ~nPt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi--~v~~vd~~d~ 137 (395)
T PRK08114 60 GTLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGV--TTTWFDPLIG 137 (395)
T ss_pred CChhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCc--EEEEECCCCH
Confidence 34555666666777777788999999888777655545555778887653 33445555566666665 4666543322
Q ss_pred HHHHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcc---cCCeEEEEeccccccc
Q 029414 89 SVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLL---KVGGIAVYDNTLWGGT 143 (194)
Q Consensus 89 ~~~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L---~~gG~lv~~~~~~~g~ 143 (194)
+.+.... .+.-.+|++... ..-....++.+.+.. .+|-.+++|++...+.
T Consensus 138 ~~l~~~l-----~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~ 192 (395)
T PRK08114 138 ADIAKLI-----QPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGV 192 (395)
T ss_pred HHHHHhc-----CCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCcccc
Confidence 3333321 234578998865 111112233333333 3456788888765443
No 391
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=89.59 E-value=4.3 Score=32.32 Aligned_cols=77 Identities=16% Similarity=0.118 Sum_probs=43.1
Q ss_pred eEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcc-------------------hHHhHHHHHHHcCCCCcEEEEecchH
Q 029414 29 KTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRE-------------------TYEIGLPIIKKAGVDHKINFIESEAL 88 (194)
Q Consensus 29 ~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~-------------------~~~~a~~~~~~~~~~~~v~~~~~d~~ 88 (194)
+||-+|+| .|...+......+ -++++.+|.+.- ..+.|.+++.+....-+++.+..+..
T Consensus 1 kVlVVGaGGlG~eilknLal~G-vg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~ 79 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSG-FRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQ 79 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccC
Confidence 47888986 3443333322223 578888886441 22345556655443335666666654
Q ss_pred HHHHHHhhcCCCCCceeEEEEeCC
Q 029414 89 SVLDQLLKYSENEGSFDYAFVDAD 112 (194)
Q Consensus 89 ~~~~~~~~~~~~~~~fD~i~id~~ 112 (194)
+.-..+ -.+||+|+...+
T Consensus 80 ~~~~~f------~~~fdvVi~alD 97 (291)
T cd01488 80 DKDEEF------YRQFNIIICGLD 97 (291)
T ss_pred chhHHH------hcCCCEEEECCC
Confidence 433343 367999887544
No 392
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=89.59 E-value=5.6 Score=33.97 Aligned_cols=102 Identities=18% Similarity=0.136 Sum_probs=54.0
Q ss_pred eEEEEcccccHHHHH--HHhhCCCCCEEEEEeCCcchHHhHHHHHHH---cCCC--------CcEEEEecchHHHHHHHh
Q 029414 29 KTIEIGVFTGYSLLL--TALTIPEDGQITAIDVNRETYEIGLPIIKK---AGVD--------HKINFIESEALSVLDQLL 95 (194)
Q Consensus 29 ~vLeiG~G~G~~~~~--la~~~~~~~~v~~iD~~~~~~~~a~~~~~~---~~~~--------~~v~~~~~d~~~~~~~~~ 95 (194)
+|.-+|+|....+.. ||.... +.+|+++|.+++.++..++.... .++. .+.++- .|..+.
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~-g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t-~~~~~~----- 75 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCP-DIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFS-TDVEKH----- 75 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC-CCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEE-cCHHHH-----
Confidence 577788765443333 333211 36799999999887765433210 0100 011111 111111
Q ss_pred hcCCCCCceeEEEEeCC--c---------c----ccHHHHHHHHhcccCCeEEEEecccccc
Q 029414 96 KYSENEGSFDYAFVDAD--K---------D----NYCNYHERLMKLLKVGGIAVYDNTLWGG 142 (194)
Q Consensus 96 ~~~~~~~~fD~i~id~~--~---------~----~~~~~~~~~~~~L~~gG~lv~~~~~~~g 142 (194)
-..-|++|+.-+ . . ....+.+.+.+.|++|-++++..+...|
T Consensus 76 -----i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~G 132 (473)
T PLN02353 76 -----VAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVK 132 (473)
T ss_pred -----HhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCC
Confidence 134677877532 1 1 2345556667788888888887776655
No 393
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=89.58 E-value=11 Score=31.19 Aligned_cols=80 Identities=19% Similarity=0.230 Sum_probs=43.5
Q ss_pred CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc-------------------chHHhHHHHHHHcCCCCcEEEEec
Q 029414 26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIES 85 (194)
Q Consensus 26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~ 85 (194)
+..+|+-+|||. |...+..+...+ -++++.+|.+. ...+.+++++.+....-+++.+..
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~G-vg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 118 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAG-VGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRE 118 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeee
Confidence 467899999984 433333322322 57899998763 123445666655442223444443
Q ss_pred chHH-HHHHHhhcCCCCCceeEEEEeCC
Q 029414 86 EALS-VLDQLLKYSENEGSFDYAFVDAD 112 (194)
Q Consensus 86 d~~~-~~~~~~~~~~~~~~fD~i~id~~ 112 (194)
...+ ....+ -..+|+|+...+
T Consensus 119 ~i~~~~~~~~------~~~~DlVid~~D 140 (370)
T PRK05600 119 RLTAENAVEL------LNGVDLVLDGSD 140 (370)
T ss_pred ecCHHHHHHH------HhCCCEEEECCC
Confidence 3322 22333 256998875544
No 394
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=89.46 E-value=2.6 Score=33.54 Aligned_cols=88 Identities=18% Similarity=0.106 Sum_probs=48.3
Q ss_pred CeEEEEcccccHHHHHHHhhCCC-C--CEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414 28 KKTIEIGVFTGYSLLLTALTIPE-D--GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 28 ~~vLeiG~G~G~~~~~la~~~~~-~--~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f 104 (194)
.+|.-||+|. .+..++..+.. + .+|+++|.+++..+.+++ .+.. ... ..+..+ . ....
T Consensus 7 ~~I~IIG~G~--mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~--~~~-~~~~~~----~------~~~a 67 (307)
T PRK07502 7 DRVALIGIGL--IGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLG--DRV-TTSAAE----A------VKGA 67 (307)
T ss_pred cEEEEEeeCH--HHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCC--cee-cCCHHH----H------hcCC
Confidence 4688888764 33333322211 2 379999999877665543 2321 111 112111 1 1457
Q ss_pred eEEEEeCCccccHHHHHHHHhcccCCeEEE
Q 029414 105 DYAFVDADKDNYCNYHERLMKLLKVGGIAV 134 (194)
Q Consensus 105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv 134 (194)
|+|++..+......+++.+...+++|.+++
T Consensus 68 DvViiavp~~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 68 DLVILCVPVGASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHhhCCCCCEEE
Confidence 888887655445556666667777776543
No 395
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=89.42 E-value=6.5 Score=31.96 Aligned_cols=100 Identities=21% Similarity=0.354 Sum_probs=56.9
Q ss_pred HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec--chHHHHHHHhhcCCC
Q 029414 24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYSEN 100 (194)
Q Consensus 24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~~~~~~~~~~~ 100 (194)
..++.+||-.|+|. |..+..+|+..+ ...+++++.+++..+.+++ .+....+..... +..+.+..+.
T Consensus 181 ~~~g~~vlI~g~g~vG~~a~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~~----- 250 (365)
T cd05279 181 VTPGSTCAVFGLGGVGLSVIMGCKAAG-ASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEMT----- 250 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHHh-----
Confidence 34567888887642 345555676653 2358888888877766643 343212222222 2222222221
Q ss_pred CCceeEEEEeCCccccHHHHHHHHhccc-CCeEEEEe
Q 029414 101 EGSFDYAFVDADKDNYCNYHERLMKLLK-VGGIAVYD 136 (194)
Q Consensus 101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~-~gG~lv~~ 136 (194)
.+.+|+++ +... ....+..+++.++ ++|.++.-
T Consensus 251 ~~~~d~vi-d~~g--~~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 251 DGGVDYAF-EVIG--SADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred CCCCcEEE-ECCC--CHHHHHHHHHHhccCCCEEEEE
Confidence 24699887 4321 1345677889999 99999864
No 396
>PRK06940 short chain dehydrogenase; Provisional
Probab=89.39 E-value=5 Score=31.23 Aligned_cols=81 Identities=19% Similarity=0.183 Sum_probs=47.9
Q ss_pred CeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcCCCCCcee
Q 029414 28 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSFD 105 (194)
Q Consensus 28 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~~fD 105 (194)
+.+|-.|+ |..+..+++.+..+.+|+.++.+++.++...+.+...+ .++.++..|..+. ...+.....+.+.+|
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id 78 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVT 78 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence 45666664 46777777777657889999988776665555554433 2566777665331 122111101135789
Q ss_pred EEEEeCC
Q 029414 106 YAFVDAD 112 (194)
Q Consensus 106 ~i~id~~ 112 (194)
.++..+.
T Consensus 79 ~li~nAG 85 (275)
T PRK06940 79 GLVHTAG 85 (275)
T ss_pred EEEECCC
Confidence 8887654
No 397
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=89.32 E-value=5.7 Score=30.52 Aligned_cols=77 Identities=19% Similarity=0.207 Sum_probs=40.9
Q ss_pred eEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcc-------------------hHHhHHHHHHHcCCCCcEEEEecchH
Q 029414 29 KTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRE-------------------TYEIGLPIIKKAGVDHKINFIESEAL 88 (194)
Q Consensus 29 ~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~-------------------~~~~a~~~~~~~~~~~~v~~~~~d~~ 88 (194)
+||-+|+| .|...+......+ -++++.+|.+.- ..+.+++++.+....-++..+..+..
T Consensus 1 kVlvvG~GGlG~eilk~La~~G-vg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMG-FGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 47888886 3433333222222 578888887542 12344555555443334555655542
Q ss_pred ---HHHHHHhhcCCCCCceeEEEEeCC
Q 029414 89 ---SVLDQLLKYSENEGSFDYAFVDAD 112 (194)
Q Consensus 89 ---~~~~~~~~~~~~~~~fD~i~id~~ 112 (194)
+....+ -.+||+|+...+
T Consensus 80 ~~~~~~~~f------~~~~DvVi~a~D 100 (234)
T cd01484 80 PEQDFNDTF------FEQFHIIVNALD 100 (234)
T ss_pred hhhhchHHH------HhCCCEEEECCC
Confidence 222233 267999987655
No 398
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.25 E-value=7.9 Score=30.89 Aligned_cols=109 Identities=11% Similarity=0.140 Sum_probs=65.4
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCC--CCcEEEEecchH-H-HHHHHhhcCCCCC
Q 029414 27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--DHKINFIESEAL-S-VLDQLLKYSENEG 102 (194)
Q Consensus 27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~-~-~~~~~~~~~~~~~ 102 (194)
...|+-+|||- .|...---.+++.++.-+|+ |+.++.=++.+...+. +..++.+..|.. + +...+........
T Consensus 93 ~~qvViLgaGL--DTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 93 IRQVVILGAGL--DTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred ccEEEEecccc--ccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 57899999954 44443322233455665665 5666665566666553 246788888877 3 3444432211122
Q ss_pred ceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEecc
Q 029414 103 SFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNT 138 (194)
Q Consensus 103 ~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~ 138 (194)
..-++++.+. .+....+++.+..+..||..+++.-.
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 3344554443 45667889999999999888888643
No 399
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=89.08 E-value=0.54 Score=34.02 Aligned_cols=44 Identities=16% Similarity=0.039 Sum_probs=31.6
Q ss_pred HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHH
Q 029414 24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLP 69 (194)
Q Consensus 24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~ 69 (194)
..+|.+|+-+|.|. |..+..++..+ +.+++.+|..+...+..+.
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~l--Ga~v~~~d~~~~~~~~~~~ 61 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGL--GAEVVVPDERPERLRQLES 61 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHC--CCEEEeccCCHHHHHhhhc
Confidence 34678999999985 66788888886 5799999998876665443
No 400
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=88.99 E-value=1.7 Score=38.22 Aligned_cols=93 Identities=9% Similarity=-0.016 Sum_probs=58.3
Q ss_pred CeEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH--HHHHHhhcCCCCCce
Q 029414 28 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSF 104 (194)
Q Consensus 28 ~~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~f 104 (194)
.+|+=+|+ |..+..+++.+. .+..++.+|.|++.++.+++ . ...++.||+.+ .+.+. .-++.
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~----g~~v~~GDat~~~~L~~a-----gi~~A 465 (601)
T PRK03659 401 PQVIIVGF--GRFGQVIGRLLMANKMRITVLERDISAVNLMRK----Y----GYKVYYGDATQLELLRAA-----GAEKA 465 (601)
T ss_pred CCEEEecC--chHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----C----CCeEEEeeCCCHHHHHhc-----CCccC
Confidence 35666665 666666665542 25689999999998887764 2 35678888765 33332 13578
Q ss_pred eEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414 105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
|++++-.+........-...+.+.|+..+++
T Consensus 466 ~~vv~~~~d~~~n~~i~~~~r~~~p~~~Iia 496 (601)
T PRK03659 466 EAIVITCNEPEDTMKIVELCQQHFPHLHILA 496 (601)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHHCCCCeEEE
Confidence 8887765433333333334466778877776
No 401
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=88.95 E-value=1.7 Score=34.74 Aligned_cols=114 Identities=17% Similarity=0.175 Sum_probs=67.7
Q ss_pred CeEEEEcccccHHHHHHHhhC----C---------------CCCEEEEEeCCcc--hHHhHHHHHHHc------------
Q 029414 28 KKTIEIGVFTGYSLLLTALTI----P---------------EDGQITAIDVNRE--TYEIGLPIIKKA------------ 74 (194)
Q Consensus 28 ~~vLeiG~G~G~~~~~la~~~----~---------------~~~~v~~iD~~~~--~~~~a~~~~~~~------------ 74 (194)
.+||-||.|.|.-...+|..+ . +...++.+|+.+- .+......+...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 699999999988766666655 0 1248999999663 333333333322
Q ss_pred -CC-C--CcEEEEecchHHHHH-HHhhcCCCCCceeEEEE--------eCCccccHHHHHHHHhcccCCeEEEEeccccc
Q 029414 75 -GV-D--HKINFIESEALSVLD-QLLKYSENEGSFDYAFV--------DADKDNYCNYHERLMKLLKVGGIAVYDNTLWG 141 (194)
Q Consensus 75 -~~-~--~~v~~~~~d~~~~~~-~~~~~~~~~~~fD~i~i--------d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~ 141 (194)
.. + -+++|.+.|....-. ++... -..+..++|-+ ........+++..+-..++||.++++-| .+
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~l-l~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvD--Sp 244 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSL-LGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVD--SP 244 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHH-hccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEc--CC
Confidence 00 1 246788888765322 11000 00123555521 1125667889999999999999999855 44
Q ss_pred ccc
Q 029414 142 GTV 144 (194)
Q Consensus 142 g~~ 144 (194)
|.+
T Consensus 245 GSY 247 (315)
T PF11312_consen 245 GSY 247 (315)
T ss_pred CCc
Confidence 443
No 402
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=88.94 E-value=9 Score=29.72 Aligned_cols=97 Identities=14% Similarity=0.144 Sum_probs=58.6
Q ss_pred HHHcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc---hHHHHHHHhh
Q 029414 22 LRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE---ALSVLDQLLK 96 (194)
Q Consensus 22 ~~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~~~~~~~ 96 (194)
....++.+||-.|+ +.|..+..+++.. +.++++++.+++..+.+++ .+.. .++..+ ..+.+..+.
T Consensus 132 ~~~~~g~~vlI~g~~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~- 201 (320)
T cd05286 132 YPVKPGDTVLVHAAAGGVGLLLTQWAKAL--GATVIGTVSSEEKAELARA----AGAD---HVINYRDEDFVERVREIT- 201 (320)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----CCCC---EEEeCCchhHHHHHHHHc-
Confidence 33446788998884 4667777788775 5788888887776665533 3432 222222 222222221
Q ss_pred cCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414 97 YSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 97 ~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
....+|+++- .... .....+++.++++|.++.
T Consensus 202 ---~~~~~d~vl~-~~~~---~~~~~~~~~l~~~g~~v~ 233 (320)
T cd05286 202 ---GGRGVDVVYD-GVGK---DTFEGSLDSLRPRGTLVS 233 (320)
T ss_pred ---CCCCeeEEEE-CCCc---HhHHHHHHhhccCcEEEE
Confidence 1246998874 3221 356677899999999885
No 403
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.94 E-value=2.5 Score=34.31 Aligned_cols=96 Identities=11% Similarity=-0.022 Sum_probs=54.7
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHH-HcCC------CCcEEEEecchHHHHHHHhhcC
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK-KAGV------DHKINFIESEALSVLDQLLKYS 98 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~~~------~~~v~~~~~d~~~~~~~~~~~~ 98 (194)
...+|.-+|+|.-..+ +|..+...+.++....+++..+..++.-. ...+ +.++... .|..+. +
T Consensus 6 ~~mkI~IiGaGa~G~a--lA~~La~~g~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t-~d~~~a---~---- 75 (341)
T PRK12439 6 REPKVVVLGGGSWGTT--VASICARRGPTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRAT-TDFAEA---A---- 75 (341)
T ss_pred CCCeEEEECCCHHHHH--HHHHHHHCCCEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEE-CCHHHH---H----
Confidence 4467999998654433 33222223467777777776665554210 0111 1122222 232221 1
Q ss_pred CCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEE
Q 029414 99 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 134 (194)
Q Consensus 99 ~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv 134 (194)
...|+|++..+.......++.+.+.++++..++
T Consensus 76 ---~~aDlVilavps~~~~~vl~~i~~~l~~~~~vI 108 (341)
T PRK12439 76 ---NCADVVVMGVPSHGFRGVLTELAKELRPWVPVV 108 (341)
T ss_pred ---hcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEE
Confidence 467999988776677888888888888876444
No 404
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.76 E-value=5.4 Score=31.45 Aligned_cols=96 Identities=16% Similarity=0.091 Sum_probs=54.1
Q ss_pred CeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc--------CCC---------CcEEEEecchHHH
Q 029414 28 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--------GVD---------HKINFIESEALSV 90 (194)
Q Consensus 28 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--------~~~---------~~v~~~~~d~~~~ 90 (194)
++|.-||+|.=..++....... +.+|+.+|.+++.++.+++.+... .+. .++++. .|..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~a 81 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAEA 81 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHHH
Confidence 4688889875333222222112 568999999999888887664321 110 123322 222221
Q ss_pred HHHHhhcCCCCCceeEEEEeCCc--cccHHHHHHHHhcccCCeEEEE
Q 029414 91 LDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 91 ~~~~~~~~~~~~~fD~i~id~~~--~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
...-|+|+...+. ......++.+.+.++++.+|+.
T Consensus 82 ----------~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 82 ----------VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred ----------hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 1456888876542 2345667777777777665544
No 405
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.72 E-value=6.9 Score=31.59 Aligned_cols=108 Identities=18% Similarity=0.249 Sum_probs=63.7
Q ss_pred HHHcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEE--ecchHHHHHHHhhcC
Q 029414 22 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI--ESEALSVLDQLLKYS 98 (194)
Q Consensus 22 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~--~~d~~~~~~~~~~~~ 98 (194)
+...++.++.-+|.|. |...+.-|+... .++++++|++++-.+.|++. |..+-+... .....+.+.+..
T Consensus 188 Akv~~GstvAVfGLG~VGLav~~Gaka~G-AsrIIgvDiN~~Kf~~ak~f----GaTe~iNp~d~~~~i~evi~EmT--- 259 (375)
T KOG0022|consen 188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAG-ASRIIGVDINPDKFEKAKEF----GATEFINPKDLKKPIQEVIIEMT--- 259 (375)
T ss_pred cccCCCCEEEEEecchHHHHHHHhHHhcC-cccEEEEecCHHHHHHHHhc----CcceecChhhccccHHHHHHHHh---
Confidence 4455678888888865 333333444443 68999999999999988864 432222211 123445444432
Q ss_pred CCCCceeEEEEeCCccccHHHHHHHHhcccCC-eEEEEecccccc
Q 029414 99 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNTLWGG 142 (194)
Q Consensus 99 ~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~~~~g 142 (194)
++.+|+-|=.. ...+.+.+++...+.| |.-++-.+...+
T Consensus 260 --dgGvDysfEc~---G~~~~m~~al~s~h~GwG~sv~iGv~~~~ 299 (375)
T KOG0022|consen 260 --DGGVDYSFECI---GNVSTMRAALESCHKGWGKSVVIGVAAAG 299 (375)
T ss_pred --cCCceEEEEec---CCHHHHHHHHHHhhcCCCeEEEEEecCCC
Confidence 47889888332 1234455666666677 766664444333
No 406
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=88.66 E-value=1.6 Score=37.97 Aligned_cols=94 Identities=7% Similarity=-0.025 Sum_probs=58.3
Q ss_pred CeEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcCCCCCce
Q 029414 28 KKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSF 104 (194)
Q Consensus 28 ~~vLeiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~~f 104 (194)
.+++-+|+ |..+..+++.+.+ +..++.+|.|++..+.+++. ....+.||+.+. +.+. +-++.
T Consensus 418 ~hiiI~G~--G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~--------g~~~i~GD~~~~~~L~~a-----~i~~a 482 (558)
T PRK10669 418 NHALLVGY--GRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER--------GIRAVLGNAANEEIMQLA-----HLDCA 482 (558)
T ss_pred CCEEEECC--ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC--------CCeEEEcCCCCHHHHHhc-----Ccccc
Confidence 45666666 6677777776532 46899999999887776642 467888887652 3332 13578
Q ss_pred eEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
|.+++.-...+....+-.+.+...|+..++..
T Consensus 483 ~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 483 RWLLLTIPNGYEAGEIVASAREKRPDIEIIAR 514 (558)
T ss_pred CEEEEEcCChHHHHHHHHHHHHHCCCCeEEEE
Confidence 88876543222222233344666777777763
No 407
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=88.63 E-value=8.3 Score=30.77 Aligned_cols=97 Identities=14% Similarity=0.105 Sum_probs=56.7
Q ss_pred HcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414 24 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 102 (194)
Q Consensus 24 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 102 (194)
...+.+||-.|+| .|..+..+|+.. +.+++.++.+++..+.+++ .+...-+.....+..+.+..+ .
T Consensus 161 ~~~~~~vlV~g~g~iG~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~-------~ 227 (333)
T cd08296 161 AKPGDLVAVQGIGGLGHLAVQYAAKM--GFRTVAISRGSDKADLARK----LGAHHYIDTSKEDVAEALQEL-------G 227 (333)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----cCCcEEecCCCccHHHHHHhc-------C
Confidence 4456788888853 244555667764 4579999988777766643 343211111112222222221 3
Q ss_pred ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
.+|+++- .. .....++.+++.++++|.++.-
T Consensus 228 ~~d~vi~-~~--g~~~~~~~~~~~l~~~G~~v~~ 258 (333)
T cd08296 228 GAKLILA-TA--PNAKAISALVGGLAPRGKLLIL 258 (333)
T ss_pred CCCEEEE-CC--CchHHHHHHHHHcccCCEEEEE
Confidence 5898873 31 1234677788999999999864
No 408
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=88.60 E-value=3.7 Score=34.48 Aligned_cols=103 Identities=21% Similarity=0.305 Sum_probs=59.8
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHH---cCC-----CCcEEEEecchHHHHHHHhhc
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK---AGV-----DHKINFIESEALSVLDQLLKY 97 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~---~~~-----~~~v~~~~~d~~~~~~~~~~~ 97 (194)
++.+|--||. |+.++.+|..+..+..|+++|++++.++..++-... .++ ..+..+ ..+. + .
T Consensus 5 ~~mkI~vIGl--GyvGlpmA~~la~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~-t~~~-~---~---- 73 (425)
T PRK15182 5 DEVKIAIIGL--GYVGLPLAVEFGKSRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKF-TSEI-E---K---- 73 (425)
T ss_pred CCCeEEEECc--CcchHHHHHHHhcCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeE-EeCH-H---H----
Confidence 3466777765 777777777776567899999999887765521100 000 001111 1121 1 1
Q ss_pred CCCCCceeEEEEeCCc-------cc---cHHHHHHHHhcccCCeEEEEecccccc
Q 029414 98 SENEGSFDYAFVDADK-------DN---YCNYHERLMKLLKVGGIAVYDNTLWGG 142 (194)
Q Consensus 98 ~~~~~~fD~i~id~~~-------~~---~~~~~~~~~~~L~~gG~lv~~~~~~~g 142 (194)
...-|++|+.-+. .+ .....+.+.+.|++|.++|...+..+|
T Consensus 74 ---~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pg 125 (425)
T PRK15182 74 ---IKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPG 125 (425)
T ss_pred ---HcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCc
Confidence 1457888876541 12 222235666888998888887666555
No 409
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=88.56 E-value=7.4 Score=30.75 Aligned_cols=98 Identities=16% Similarity=0.181 Sum_probs=58.2
Q ss_pred cCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414 25 VNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 102 (194)
Q Consensus 25 ~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 102 (194)
.++.+||-.|. +.|..+..+|+.. +.++++++.+++..+.+++.+ +...-+.....+..+.+..+. .+
T Consensus 144 ~~~~~vlI~g~~g~ig~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~v~~~~-----~~ 213 (329)
T cd05288 144 KPGETVVVSAAAGAVGSVVGQIAKLL--GARVVGIAGSDEKCRWLVEEL---GFDAAINYKTPDLAEALKEAA-----PD 213 (329)
T ss_pred CCCCEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhhc---CCceEEecCChhHHHHHHHhc-----cC
Confidence 35678888884 4677777788874 568999988877666555432 332111211112222222221 24
Q ss_pred ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
.+|+++ +... ...+..+++.++++|.++.-
T Consensus 214 ~~d~vi-~~~g---~~~~~~~~~~l~~~G~~v~~ 243 (329)
T cd05288 214 GIDVYF-DNVG---GEILDAALTLLNKGGRIALC 243 (329)
T ss_pred CceEEE-Ecch---HHHHHHHHHhcCCCceEEEE
Confidence 689776 4322 13577788999999998853
No 410
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.54 E-value=1.4 Score=35.38 Aligned_cols=66 Identities=9% Similarity=-0.085 Sum_probs=46.8
Q ss_pred EEEEcccccHHHHHHHhhCCCCCE-EEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 029414 30 TIEIGVFTGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF 108 (194)
Q Consensus 30 vLeiG~G~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~ 108 (194)
|+|+.||.|..++.|-.+ +.+ +.++|+++...+..+.++. . .++.+|..++...- .+.+|+++
T Consensus 1 vidLF~G~GG~~~Gl~~a---G~~~~~a~e~~~~a~~ty~~N~~------~-~~~~~Di~~~~~~~------~~~~dvl~ 64 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA---GFKCVFASEIDKYAQKTYEANFG------N-KVPFGDITKISPSD------IPDFDILL 64 (315)
T ss_pred CEEEecCccHHHHHHHHc---CCeEEEEEeCCHHHHHHHHHhCC------C-CCCccChhhhhhhh------CCCcCEEE
Confidence 589999999999998764 334 5679999988888777762 2 44557776653321 25689887
Q ss_pred EeC
Q 029414 109 VDA 111 (194)
Q Consensus 109 id~ 111 (194)
...
T Consensus 65 gg~ 67 (315)
T TIGR00675 65 GGF 67 (315)
T ss_pred ecC
Confidence 653
No 411
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.42 E-value=9.2 Score=30.47 Aligned_cols=81 Identities=19% Similarity=0.189 Sum_probs=55.6
Q ss_pred CCCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcC-C
Q 029414 26 NAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-E 99 (194)
Q Consensus 26 ~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~-~ 99 (194)
.++.||--|.|.|- .++.+|+. +.+++..|++.+..+...+.++..| ++..+.+|..+. ......+. +
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r---g~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR---GAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh---CCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHH
Confidence 46789999998884 66667775 5689999999999988888888775 677777665321 11111111 2
Q ss_pred CCCceeEEEEeCC
Q 029414 100 NEGSFDYAFVDAD 112 (194)
Q Consensus 100 ~~~~fD~i~id~~ 112 (194)
+-+..|+++-++.
T Consensus 111 e~G~V~ILVNNAG 123 (300)
T KOG1201|consen 111 EVGDVDILVNNAG 123 (300)
T ss_pred hcCCceEEEeccc
Confidence 3578898876654
No 412
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=88.32 E-value=11 Score=30.74 Aligned_cols=79 Identities=16% Similarity=0.195 Sum_probs=44.1
Q ss_pred CCCeEEEEcccc-cHHH-HHHHhhCCCCCEEEEEeCCc---------------------chHHhHHHHHHHcCCCCcEEE
Q 029414 26 NAKKTIEIGVFT-GYSL-LLTALTIPEDGQITAIDVNR---------------------ETYEIGLPIIKKAGVDHKINF 82 (194)
Q Consensus 26 ~~~~vLeiG~G~-G~~~-~~la~~~~~~~~v~~iD~~~---------------------~~~~~a~~~~~~~~~~~~v~~ 82 (194)
...+|+-+|||. |... ..|+.. . -++++.+|.+. ...+.+++++.+.+..-+++.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~a-G-vg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~ 100 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRA-G-VGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEA 100 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc-C-CCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEE
Confidence 557899999984 4433 334433 2 57999999863 122344556655442223455
Q ss_pred EecchHH-HHHHHhhcCCCCCceeEEEEeCC
Q 029414 83 IESEALS-VLDQLLKYSENEGSFDYAFVDAD 112 (194)
Q Consensus 83 ~~~d~~~-~~~~~~~~~~~~~~fD~i~id~~ 112 (194)
+..+... ....+ ...||+|+...+
T Consensus 101 ~~~~~~~~~~~~~------~~~~DlVid~~D 125 (339)
T PRK07688 101 IVQDVTAEELEEL------VTGVDLIIDATD 125 (339)
T ss_pred EeccCCHHHHHHH------HcCCCEEEEcCC
Confidence 5444322 22333 256998876544
No 413
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=88.31 E-value=8.7 Score=31.04 Aligned_cols=99 Identities=17% Similarity=0.170 Sum_probs=55.0
Q ss_pred CCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH---HHHHHHhhcCCCC
Q 029414 26 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL---SVLDQLLKYSENE 101 (194)
Q Consensus 26 ~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~~~~~~~~~~~ 101 (194)
++.+||-.|+| .|..+..+|+... -.++++++.+++..+.++ ..+...-+.....+.. ..+.... ..
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~----~~ 247 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAG-ARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDIT----GG 247 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHh----CC
Confidence 56678888754 2345566677653 228999988776665543 3354311111111111 1122221 12
Q ss_pred CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
..+|+++-.... ...+..+++.++++|.++.-
T Consensus 248 ~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 248 RGADVVIEASGH---PAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred CCCcEEEECCCC---hHHHHHHHHHhccCCEEEEE
Confidence 469977743211 23567788999999999864
No 414
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=88.22 E-value=9.7 Score=31.49 Aligned_cols=120 Identities=17% Similarity=0.117 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHH
Q 029414 12 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 91 (194)
Q Consensus 12 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 91 (194)
+...++=..++.......++-.++|+......+...+.++.+|+..+..-......-+.+...+. .+.+...|..++.
T Consensus 53 p~~~~lE~~lA~l~g~~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~--~v~~~~~d~~~l~ 130 (385)
T PRK08574 53 PTLRPLEEALAKLEGGVDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGV--KVVLAYPSTEDII 130 (385)
T ss_pred ccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCc--EEEEECCCHHHHH
Confidence 34555555566666666777788777666555544555577777765543322222222333343 3444444433333
Q ss_pred HHHhhcCCCCC-ceeEEEEeCCc--cccHHHHHHHHhcccC-CeEEEEeccc
Q 029414 92 DQLLKYSENEG-SFDYAFVDADK--DNYCNYHERLMKLLKV-GGIAVYDNTL 139 (194)
Q Consensus 92 ~~~~~~~~~~~-~fD~i~id~~~--~~~~~~~~~~~~~L~~-gG~lv~~~~~ 139 (194)
..+ .+ +..+|++.... ......++.+.++.+. |..+++|++.
T Consensus 131 ~~i------~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~ 176 (385)
T PRK08574 131 EAI------KEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTF 176 (385)
T ss_pred Hhc------CccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCC
Confidence 333 23 57888886431 1111123444444443 5566677764
No 415
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=88.17 E-value=2.1 Score=34.22 Aligned_cols=34 Identities=6% Similarity=0.049 Sum_probs=26.7
Q ss_pred CceeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414 102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
+.+|+|++........+.++.+.+.+++++.++.
T Consensus 71 ~~~D~vilavK~~~~~~~~~~l~~~~~~~~~iv~ 104 (313)
T PRK06249 71 PPCDWVLVGLKTTANALLAPLIPQVAAPDAKVLL 104 (313)
T ss_pred CCCCEEEEEecCCChHhHHHHHhhhcCCCCEEEE
Confidence 6799999976655666778888888999887764
No 416
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=88.13 E-value=3.7 Score=32.24 Aligned_cols=85 Identities=14% Similarity=0.066 Sum_probs=47.5
Q ss_pred eEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 029414 29 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 107 (194)
Q Consensus 29 ~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i 107 (194)
+|.=||+| ..+..++..+. .+.+|+++|.+++..+.+++. +. +.....+. + . ....|+|
T Consensus 2 ~I~IIG~G--~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~----g~---~~~~~~~~-~---~-------~~~aDlV 61 (279)
T PRK07417 2 KIGIVGLG--LIGGSLGLDLRSLGHTVYGVSRRESTCERAIER----GL---VDEASTDL-S---L-------LKDCDLV 61 (279)
T ss_pred eEEEEeec--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC----CC---cccccCCH-h---H-------hcCCCEE
Confidence 46667765 33333333321 246899999998777665432 21 11111111 1 1 1457888
Q ss_pred EEeCCccccHHHHHHHHhcccCCeEE
Q 029414 108 FVDADKDNYCNYHERLMKLLKVGGIA 133 (194)
Q Consensus 108 ~id~~~~~~~~~~~~~~~~L~~gG~l 133 (194)
++..+.......++.+.+.++++.++
T Consensus 62 ilavp~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 62 ILALPIGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEE
Confidence 88776555566677777777765433
No 417
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=88.09 E-value=8 Score=29.79 Aligned_cols=92 Identities=13% Similarity=0.126 Sum_probs=56.0
Q ss_pred HcCCCeEEEEcccc-cHHHHHHHhhCCCCCE-EEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414 24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 101 (194)
Q Consensus 24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 101 (194)
..++.++|-.|+|. |..+..+|+... .+ +++++.+++..+.+++. +....+.... + .. . ..
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g--~~~vi~~~~~~~~~~~~~~~----g~~~~~~~~~-~--~~---~-----~~ 157 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAG--AREVVGVDPDAARRELAEAL----GPADPVAADT-A--DE---I-----GG 157 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CCcEEEECCCHHHHHHHHHc----CCCccccccc-h--hh---h-----cC
Confidence 44567888888765 667777777754 44 99999888877655542 3111111110 0 00 1 13
Q ss_pred CceeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414 102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
..+|+++-.... ...+...++.++++|.++.
T Consensus 158 ~~~d~vl~~~~~---~~~~~~~~~~l~~~g~~~~ 188 (277)
T cd08255 158 RGADVVIEASGS---PSALETALRLLRDRGRVVL 188 (277)
T ss_pred CCCCEEEEccCC---hHHHHHHHHHhcCCcEEEE
Confidence 569988753222 2356778899999999875
No 418
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=88.06 E-value=1.1 Score=34.91 Aligned_cols=75 Identities=20% Similarity=0.246 Sum_probs=45.0
Q ss_pred HHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCccccHHHH
Q 029414 41 LLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH 120 (194)
Q Consensus 41 ~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~ 120 (194)
+..+.+..+ ..+|+++|.+++..+.+.+. |... -...+ .+ .+ ..+|+|++..+.......+
T Consensus 2 A~aL~~~g~-~~~v~g~d~~~~~~~~a~~~----g~~~---~~~~~-~~---~~-------~~~DlvvlavP~~~~~~~l 62 (258)
T PF02153_consen 2 ALALRKAGP-DVEVYGYDRDPETLEAALEL----GIID---EASTD-IE---AV-------EDADLVVLAVPVSAIEDVL 62 (258)
T ss_dssp HHHHHHTTT-TSEEEEE-SSHHHHHHHHHT----TSSS---EEESH-HH---HG-------GCCSEEEE-S-HHHHHHHH
T ss_pred hHHHHhCCC-CeEEEEEeCCHHHHHHHHHC----CCee---eccCC-Hh---Hh-------cCCCEEEEcCCHHHHHHHH
Confidence 344545433 68999999999887766532 4331 11111 12 22 4579999988777788888
Q ss_pred HHHHhcccCCeEEE
Q 029414 121 ERLMKLLKVGGIAV 134 (194)
Q Consensus 121 ~~~~~~L~~gG~lv 134 (194)
+.+.+.+++|.++.
T Consensus 63 ~~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 63 EEIAPYLKPGAIVT 76 (258)
T ss_dssp HHHHCGS-TTSEEE
T ss_pred HHhhhhcCCCcEEE
Confidence 88888888765443
No 419
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=88.04 E-value=6 Score=32.10 Aligned_cols=101 Identities=24% Similarity=0.287 Sum_probs=57.0
Q ss_pred HcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414 24 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 102 (194)
Q Consensus 24 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 102 (194)
..++.+||-.|+| .|..+..+|+..+ ..+++.++.+++..+.+++ .+...-+.....+..+.+..+. ...
T Consensus 180 ~~~g~~vLI~g~g~vG~a~i~lak~~G-~~~Vi~~~~~~~~~~~~~~----~g~~~vv~~~~~~~~~~l~~~~----~~~ 250 (363)
T cd08279 180 VRPGDTVAVIGCGGVGLNAIQGARIAG-ASRIIAVDPVPEKLELARR----FGATHTVNASEDDAVEAVRDLT----DGR 250 (363)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHHHHHHHH----hCCeEEeCCCCccHHHHHHHHc----CCC
Confidence 4456788888764 4666677777643 2248888887776665532 3432111111112223232321 135
Q ss_pred ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
.+|+++- .... ...+..+++.|+++|.++.-
T Consensus 251 ~vd~vld-~~~~--~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 251 GADYAFE-AVGR--AATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred CCCEEEE-cCCC--hHHHHHHHHHhhcCCeEEEE
Confidence 6997763 3211 24567788999999998863
No 420
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=88.00 E-value=7.4 Score=30.68 Aligned_cols=99 Identities=17% Similarity=0.181 Sum_probs=56.3
Q ss_pred HcCCCeEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414 24 LVNAKKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 101 (194)
Q Consensus 24 ~~~~~~vLeiG~G--~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 101 (194)
..++.+++-.|.+ .|..+..++... +.+++.++.+++..+.++. .+....+.....+..+.+.... ..
T Consensus 164 ~~~~~~vlI~g~~~~iG~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~----~~ 233 (342)
T cd08266 164 LRPGETVLVHGAGSGVGSAAIQIAKLF--GATVIATAGSEDKLERAKE----LGADYVIDYRKEDFVREVRELT----GK 233 (342)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCeEEecCChHHHHHHHHHh----CC
Confidence 3456788888875 556666666664 5678888888766655432 2322112111112222222221 12
Q ss_pred CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
..+|.++-.... ..+..+++.++++|.++.-
T Consensus 234 ~~~d~~i~~~g~----~~~~~~~~~l~~~G~~v~~ 264 (342)
T cd08266 234 RGVDVVVEHVGA----ATWEKSLKSLARGGRLVTC 264 (342)
T ss_pred CCCcEEEECCcH----HHHHHHHHHhhcCCEEEEE
Confidence 468988754322 3467778899999998864
No 421
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=87.93 E-value=5.3 Score=33.13 Aligned_cols=100 Identities=18% Similarity=0.235 Sum_probs=52.7
Q ss_pred EEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc---CCC-----CcEEEEec-chHHHHHHHhhcCCC
Q 029414 30 TIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA---GVD-----HKINFIES-EALSVLDQLLKYSEN 100 (194)
Q Consensus 30 vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~---~~~-----~~v~~~~~-d~~~~~~~~~~~~~~ 100 (194)
|--+|. |+.++.+|..+..+..|+++|++++.++.+++..... +++ .+.++... +..+.
T Consensus 3 I~VIGl--GyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~---------- 70 (388)
T PRK15057 3 ITISGT--GYVGLSNGLLIAQNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEA---------- 70 (388)
T ss_pred EEEECC--CHHHHHHHHHHHhCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhh----------
Confidence 555665 5555554444433567999999999888776532110 000 01122111 11111
Q ss_pred CCceeEEEEeCCcc-----------ccHHHHHHHHhcccCCeEEEEecccccc
Q 029414 101 EGSFDYAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYDNTLWGG 142 (194)
Q Consensus 101 ~~~fD~i~id~~~~-----------~~~~~~~~~~~~L~~gG~lv~~~~~~~g 142 (194)
...-|+|++.-+.+ ...+.++.+.+ +++|.++|...+..+|
T Consensus 71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pg 122 (388)
T PRK15057 71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVG 122 (388)
T ss_pred hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCc
Confidence 13568888765421 22344455556 6888877776666554
No 422
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=87.89 E-value=10 Score=30.04 Aligned_cols=98 Identities=14% Similarity=0.119 Sum_probs=54.4
Q ss_pred CCCeEEEE--c-ccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414 26 NAKKTIEI--G-VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 102 (194)
Q Consensus 26 ~~~~vLei--G-~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 102 (194)
.+.+++-+ | .+.|..+..+|+.. +.++++++.+++..+.+++ .+...-+.....+..+.+..+. ...
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~v~~~~----~~~ 211 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKAD--GIKVINIVRRKEQVDLLKK----IGAEYVLNSSDPDFLEDLKELI----AKL 211 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEECCCccHHHHHHHHh----CCC
Confidence 34455554 3 33456667777774 5689999988877776654 3432112212223333333321 124
Q ss_pred ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414 103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
.+|+++ |.... ......++.++++|.++.-.
T Consensus 212 ~~d~vi-d~~g~---~~~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 212 NATIFF-DAVGG---GLTGQILLAMPYGSTLYVYG 242 (324)
T ss_pred CCcEEE-ECCCc---HHHHHHHHhhCCCCEEEEEE
Confidence 689777 43221 12344678889999988743
No 423
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=87.86 E-value=12 Score=29.82 Aligned_cols=100 Identities=15% Similarity=0.176 Sum_probs=55.7
Q ss_pred CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414 26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f 104 (194)
++++|+-.|+|. |..+..+|+... ..++++++.+++..+.+++ .+...-+.....+..+.+..+. ..+.+
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~----lg~~~~~~~~~~~~~~~~~~~~----~~~~~ 233 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVG-ARHVVITDVNEYRLELARK----MGATRAVNVAKEDLRDVMAELG----MTEGF 233 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHHHhc----CCCCC
Confidence 466777777653 556677777753 2367888777665554433 3432111111222223333321 13568
Q ss_pred eEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414 105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
|+++-... ....+..+.+.|+++|.++.-.
T Consensus 234 d~v~d~~g---~~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 234 DVGLEMSG---APSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred CEEEECCC---CHHHHHHHHHHHhcCCEEEEEe
Confidence 97775222 1345677789999999998853
No 424
>PRK07671 cystathionine beta-lyase; Provisional
Probab=87.79 E-value=12 Score=30.83 Aligned_cols=121 Identities=13% Similarity=0.194 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHhHHHHHHHcCCCCcEEEEec-ch
Q 029414 10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRE-TYEIGLPIIKKAGVDHKINFIES-EA 87 (194)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~~~~~~v~~~~~-d~ 87 (194)
.++....+-..++........+-+++|.+.....++ .+.++.+|++.+..-. .+....+.+...+. .+.++.. |.
T Consensus 48 ~~p~~~~Le~~lA~l~g~~~~~~~~sG~aai~~~~~-~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~--~v~~v~~~d~ 124 (377)
T PRK07671 48 GNPTRAALEELIAVLEGGHAGFAFGSGMAAITAVMM-LFSSGDHVILTDDVYGGTYRVMTKVLNRFGI--EHTFVDTSNL 124 (377)
T ss_pred CChHHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHH-HhCCCCEEEECCCccchHHHHHHHHHhcCCe--EEEEECCCCH
Confidence 345566666677776655566668888776554443 3445778887775432 34444444444553 3444443 33
Q ss_pred HHHHHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccC-CeEEEEeccc
Q 029414 88 LSVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKV-GGIAVYDNTL 139 (194)
Q Consensus 88 ~~~~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~ 139 (194)
.++...+ .+...+|++..+ +......++.+.++.+. |..+++|++.
T Consensus 125 ~~l~~ai------~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~ 173 (377)
T PRK07671 125 EEVEEAI------RPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTF 173 (377)
T ss_pred HHHHHhc------CCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCC
Confidence 3332222 234678887643 11112223444444443 5566666654
No 425
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=87.76 E-value=11 Score=30.13 Aligned_cols=99 Identities=20% Similarity=0.261 Sum_probs=56.3
Q ss_pred HcCCCeEEEEcccc-cHHHHHHHhhCCCCCE-EEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414 24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 101 (194)
Q Consensus 24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 101 (194)
..++.+||-.|+|. |..+..+|+.. +.+ +++++.+++..+.++ ..+...-+...... .+.+.... ..
T Consensus 157 ~~~~~~vlI~g~g~~g~~~~~lA~~~--G~~~v~~~~~~~~~~~~l~----~~g~~~~~~~~~~~-~~~~~~~~----~~ 225 (343)
T cd08236 157 ITLGDTVVVIGAGTIGLLAIQWLKIL--GAKRVIAVDIDDEKLAVAR----ELGADDTINPKEED-VEKVRELT----EG 225 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHH----HcCCCEEecCcccc-HHHHHHHh----CC
Confidence 34566888888755 66777778775 344 888887776555443 23432111111111 22222221 12
Q ss_pred CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
..+|+++-... ....+..+++.|+++|.++.-
T Consensus 226 ~~~d~vld~~g---~~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 226 RGADLVIEAAG---SPATIEQALALARPGGKVVLV 257 (343)
T ss_pred CCCCEEEECCC---CHHHHHHHHHHhhcCCEEEEE
Confidence 45998874321 134567788999999998864
No 426
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=87.68 E-value=3 Score=32.98 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=26.5
Q ss_pred CceeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414 102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
..+|+|++..........++.+.+.+.++.+|+.
T Consensus 67 ~~~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 67 GPFDLVILAVKAYQLDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred CCCCEEEEEecccCHHHHHHHHHhhcCCCCEEEE
Confidence 5799999887666677788888888888776654
No 427
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=87.66 E-value=14 Score=31.15 Aligned_cols=123 Identities=11% Similarity=0.107 Sum_probs=66.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc-chHHhHHHHHHHcCCCCcEEEEecchH
Q 029414 10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNR-ETYEIGLPIIKKAGVDHKINFIESEAL 88 (194)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 88 (194)
.++....+-..++.....+..+-.++|+......+...+.++.+|+..+..- ......+..+...+. ++.++..+..
T Consensus 62 ~~p~~~~Le~~lA~leg~~~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv--~v~~vd~~d~ 139 (431)
T PRK08248 62 MNPTTDVFEKRIAALEGGIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGI--TVKFVDPSDP 139 (431)
T ss_pred CCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCE--EEEEECCCCH
Confidence 3555666667777777777788888888776666654455577787766422 233344444555554 3445443323
Q ss_pred HHHHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccC-CeEEEEeccc
Q 029414 89 SVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKV-GGIAVYDNTL 139 (194)
Q Consensus 89 ~~~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~ 139 (194)
+.+.... .+...+|++... +......++.+.++.+. |..+++|++.
T Consensus 140 e~l~~ai-----~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~ 188 (431)
T PRK08248 140 ENFEAAI-----TDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTF 188 (431)
T ss_pred HHHHHhc-----CCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCC
Confidence 3333321 245678887633 11111123444444444 4456666654
No 428
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=87.64 E-value=3.6 Score=32.54 Aligned_cols=32 Identities=22% Similarity=0.201 Sum_probs=23.2
Q ss_pred CceeEEEEeCCccccHHHHHHHHhcccCCeEE
Q 029414 102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 133 (194)
Q Consensus 102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~l 133 (194)
...|+|++..+......+++++.+.|++|.++
T Consensus 63 ~~aD~VivavPi~~~~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 63 AEADLVIVAVPIEATEEVLKELAPHLKKGAIV 94 (279)
T ss_pred ccCCEEEEeccHHHHHHHHHHhcccCCCCCEE
Confidence 45788888877777777788777777765433
No 429
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=87.56 E-value=14 Score=31.80 Aligned_cols=120 Identities=17% Similarity=0.189 Sum_probs=71.2
Q ss_pred CCHHHHHHHHHHHHHc--CCCeEEEEcccccHHHHHHHhhCC---CCCEEEEEeCCcchHHhHHHHHHHcCCC-CcEEEE
Q 029414 10 TAPDAGQLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIP---EDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFI 83 (194)
Q Consensus 10 ~~~~~~~~l~~l~~~~--~~~~vLeiG~G~G~~~~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~~~ 83 (194)
+-+....++..++... +...+.|..||+|........... ....+++-|..+.+...++.++.-.+.. +.....
T Consensus 199 Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~ 278 (501)
T TIGR00497 199 TPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNII 278 (501)
T ss_pred CcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcc
Confidence 3444555555555432 346899999999998766544322 1346899999999999999887655543 233333
Q ss_pred ecchHHHHHHHhhcCCCCCceeEEEEeCCc----------------------------cccHHHHHHHHhcccCCeEEE
Q 029414 84 ESEALSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAV 134 (194)
Q Consensus 84 ~~d~~~~~~~~~~~~~~~~~fD~i~id~~~----------------------------~~~~~~~~~~~~~L~~gG~lv 134 (194)
.+|........ ...+||.|+.+++. ..-..++.++...|++||...
T Consensus 279 ~~dtl~~~d~~-----~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~a 352 (501)
T TIGR00497 279 NADTLTTKEWE-----NENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAA 352 (501)
T ss_pred cCCcCCCcccc-----ccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEE
Confidence 44433211110 12457777655420 012345666778899988643
No 430
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=87.55 E-value=6.4 Score=33.00 Aligned_cols=93 Identities=19% Similarity=0.171 Sum_probs=56.9
Q ss_pred eEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH--HHHHHhhcCCCCCcee
Q 029414 29 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFD 105 (194)
Q Consensus 29 ~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~fD 105 (194)
+|+-+|+ |..+..++..+. .+..++.+|.+++..+.+++.. .+.++.+|+.+ .+... +...+|
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~-------~~~~~~gd~~~~~~l~~~-----~~~~a~ 67 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL-------DVRTVVGNGSSPDVLREA-----GAEDAD 67 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc-------CEEEEEeCCCCHHHHHHc-----CCCcCC
Confidence 4677776 777777777653 2568999999998776655421 46777888754 23322 135789
Q ss_pred EEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414 106 YAFVDADKDNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 106 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
.+++..........+....+.+.|.-.+++
T Consensus 68 ~vi~~~~~~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 68 LLIAVTDSDETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred EEEEecCChHHHHHHHHHHHHhcCCCeEEE
Confidence 888765443334444444556644444444
No 431
>PRK10083 putative oxidoreductase; Provisional
Probab=87.50 E-value=8.3 Score=30.75 Aligned_cols=99 Identities=14% Similarity=0.057 Sum_probs=53.0
Q ss_pred HcCCCeEEEEcccc-cHHHHHHHhh-CCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414 24 LVNAKKTIEIGVFT-GYSLLLTALT-IPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 101 (194)
Q Consensus 24 ~~~~~~vLeiG~G~-G~~~~~la~~-~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 101 (194)
..++.+|+-.|+|. |..++.+|+. .+ -..+++++.+++..+.+++ .+...-+.....+..+.+.. . .
T Consensus 158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~G-~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~---~---g 226 (339)
T PRK10083 158 PTEQDVALIYGAGPVGLTIVQVLKGVYN-VKAVIVADRIDERLALAKE----SGADWVINNAQEPLGEALEE---K---G 226 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHhc---C---C
Confidence 44567888888542 3344445553 23 3468888888877766554 24321111111122222211 0 1
Q ss_pred CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
..+|+++ |.... ...+..+++.|+++|.++.-
T Consensus 227 ~~~d~vi-d~~g~--~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 227 IKPTLII-DAACH--PSILEEAVTLASPAARIVLM 258 (339)
T ss_pred CCCCEEE-ECCCC--HHHHHHHHHHhhcCCEEEEE
Confidence 2345554 43221 23567788999999999874
No 432
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=87.50 E-value=1.9 Score=38.05 Aligned_cols=93 Identities=12% Similarity=0.038 Sum_probs=57.3
Q ss_pred CeEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcCCCCCce
Q 029414 28 KKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSF 104 (194)
Q Consensus 28 ~~vLeiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~~f 104 (194)
.+|+-+|+ |..+..+++.+.. +..++.+|.|++.++.+++. ...++.||+.+. +.+. +-++.
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~a-----gi~~A 465 (621)
T PRK03562 401 PRVIIAGF--GRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF--------GMKVFYGDATRMDLLESA-----GAAKA 465 (621)
T ss_pred CcEEEEec--ChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc--------CCeEEEEeCCCHHHHHhc-----CCCcC
Confidence 56888777 4555555544322 45899999999988877652 356788887653 3332 13578
Q ss_pred eEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414 105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
|++++--+..+.....-...+.+.|+-.+++
T Consensus 466 ~~vvv~~~d~~~n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 466 EVLINAIDDPQTSLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 8888765433333333334456667766665
No 433
>PRK08064 cystathionine beta-lyase; Provisional
Probab=87.36 E-value=13 Score=30.68 Aligned_cols=121 Identities=15% Similarity=0.182 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414 11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRE-TYEIGLPIIKKAGVDHKINFIESEALS 89 (194)
Q Consensus 11 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~ 89 (194)
++...++-..++........+-+++|+......+. .+.++.+|+..+..-. .....+..+...|. ++.++..+..+
T Consensus 53 ~p~~~~le~~lA~l~g~~~~v~~~sG~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~--~v~~v~~~d~~ 129 (390)
T PRK08064 53 NPTREALEDIIAELEGGTKGFAFASGMAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRFGI--EHTFVDMTNLE 129 (390)
T ss_pred ChhHHHHHHHHHHHhCCCCeEEECCHHHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHHcCC--EEEEECCCCHH
Confidence 45566666666666555555666776665444443 4455778887765322 34444444555554 35554432223
Q ss_pred HHHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccC-CeEEEEeccc
Q 029414 90 VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKV-GGIAVYDNTL 139 (194)
Q Consensus 90 ~~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~ 139 (194)
.+.... .+.-.+|++..+ .......++.+.++.+. |..+++|++.
T Consensus 130 ~l~~~l-----~~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~ 177 (390)
T PRK08064 130 EVAQNI-----KPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTF 177 (390)
T ss_pred HHHHhc-----CCCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCC
Confidence 333321 234678887754 11111223344444433 5566666653
No 434
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=87.30 E-value=8.9 Score=31.60 Aligned_cols=80 Identities=15% Similarity=0.157 Sum_probs=44.1
Q ss_pred CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCC-------------------cchHHhHHHHHHHcCCCCcEEEEec
Q 029414 26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVN-------------------RETYEIGLPIIKKAGVDHKINFIES 85 (194)
Q Consensus 26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~-------------------~~~~~~a~~~~~~~~~~~~v~~~~~ 85 (194)
+..+|+-+|||. |...+..+...+ -++++.+|.+ ....+.+++++.+....-++..+..
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~G-vg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~ 212 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAG-VGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE 212 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 567899999974 443333333333 5789999987 2345556666665442223444433
Q ss_pred chHH-HHHHHhhcCCCCCceeEEEEeCC
Q 029414 86 EALS-VLDQLLKYSENEGSFDYAFVDAD 112 (194)
Q Consensus 86 d~~~-~~~~~~~~~~~~~~fD~i~id~~ 112 (194)
...+ ....+ ...+|+|+...+
T Consensus 213 ~~~~~~~~~~------~~~~D~Vv~~~d 234 (376)
T PRK08762 213 RVTSDNVEAL------LQDVDVVVDGAD 234 (376)
T ss_pred cCChHHHHHH------HhCCCEEEECCC
Confidence 3221 22232 256998875544
No 435
>PRK05939 hypothetical protein; Provisional
Probab=87.27 E-value=16 Score=30.40 Aligned_cols=122 Identities=12% Similarity=0.142 Sum_probs=66.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHhHHHHHHHcCCCCcEEEEecchH
Q 029414 10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRE-TYEIGLPIIKKAGVDHKINFIESEAL 88 (194)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~~~~~~v~~~~~d~~ 88 (194)
-+|.+..+=..++........+-+.+|.......+...+.++.+|+..+..-. ..... ..+...|. .+.++..+..
T Consensus 45 g~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~-~~l~~~G~--~v~~v~~~d~ 121 (397)
T PRK05939 45 GTPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLF-GTLRGLGV--EVTMVDATDV 121 (397)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHH-HHHHhcCC--EEEEECCCCH
Confidence 35666666667777777777888888776655555444555778888765322 22222 23444553 3455433222
Q ss_pred HHHHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccCCe-EEEEeccc
Q 029414 89 SVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGG-IAVYDNTL 139 (194)
Q Consensus 89 ~~~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~gG-~lv~~~~~ 139 (194)
+.+.... .+.-.+|++... .......++.+.++.+..| .+++|++.
T Consensus 122 e~l~~~l-----~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 122 QNVAAAI-----RPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred HHHHHhC-----CCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence 3233321 244678887643 2222344566666665444 55555543
No 436
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=87.17 E-value=12 Score=28.90 Aligned_cols=80 Identities=16% Similarity=0.155 Sum_probs=43.6
Q ss_pred CCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcc-------------------hHHhHHHHHHHcCCCCcEEEEec
Q 029414 26 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRE-------------------TYEIGLPIIKKAGVDHKINFIES 85 (194)
Q Consensus 26 ~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~-------------------~~~~a~~~~~~~~~~~~v~~~~~ 85 (194)
+..+|+-+|+| .|...+......+ -++++.+|.+.- ..+.+++++.+....-+++.+..
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~ 109 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAG-VGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINA 109 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEec
Confidence 56899999997 3443333333333 578888886442 22344556655442224444444
Q ss_pred chHH-HHHHHhhcCCCCCceeEEEEeCC
Q 029414 86 EALS-VLDQLLKYSENEGSFDYAFVDAD 112 (194)
Q Consensus 86 d~~~-~~~~~~~~~~~~~~fD~i~id~~ 112 (194)
...+ ....+ ...||+|+...+
T Consensus 110 ~i~~~~~~~~------~~~~DiVi~~~D 131 (245)
T PRK05690 110 RLDDDELAAL------IAGHDLVLDCTD 131 (245)
T ss_pred cCCHHHHHHH------HhcCCEEEecCC
Confidence 3322 22333 257998886554
No 437
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=87.15 E-value=3.7 Score=32.88 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=29.3
Q ss_pred CCceeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414 101 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
.+.+|+|++.....+..+.++.+.+.++++..+++
T Consensus 65 ~~~~Dlviv~vKa~q~~~al~~l~~~~~~~t~vl~ 99 (307)
T COG1893 65 LGPADLVIVTVKAYQLEEALPSLAPLLGPNTVVLF 99 (307)
T ss_pred cCCCCEEEEEeccccHHHHHHHhhhcCCCCcEEEE
Confidence 36899999988777788899999999999986654
No 438
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=87.08 E-value=0.62 Score=31.18 Aligned_cols=32 Identities=16% Similarity=0.147 Sum_probs=24.6
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc
Q 029414 27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNR 61 (194)
Q Consensus 27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~ 61 (194)
...-+|+|||+|...-.|... +-.-.++|.-.
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~E---Gy~G~GiD~R~ 90 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSE---GYPGWGIDARR 90 (112)
T ss_pred CCceEEccCCchHHHHHHHhC---CCCcccccccc
Confidence 457999999999998888764 55667787643
No 439
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=87.08 E-value=8.3 Score=32.34 Aligned_cols=86 Identities=10% Similarity=0.011 Sum_probs=55.8
Q ss_pred CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414 26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f 104 (194)
.+++|+-+|+|. |......++.. +.+|+.+|.++...+.|++ .|. ... +..+ .+ ...
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~----~G~----~~~--~~~e---~v-------~~a 258 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDPICALQAAM----EGY----EVM--TMEE---AV-------KEG 258 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEECChhhHHHHHh----cCC----EEc--cHHH---HH-------cCC
Confidence 578999999986 55556566654 4689999999987776654 232 111 1111 11 357
Q ss_pred eEEEEeCCccccHHHHHHH-HhcccCCeEEEEe
Q 029414 105 DYAFVDADKDNYCNYHERL-MKLLKVGGIAVYD 136 (194)
Q Consensus 105 D~i~id~~~~~~~~~~~~~-~~~L~~gG~lv~~ 136 (194)
|+|+.... ....+... .+.+++||+++.-
T Consensus 259 DVVI~atG---~~~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 259 DIFVTTTG---NKDIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred CEEEECCC---CHHHHHHHHHhcCCCCcEEEEe
Confidence 98875432 23445544 7999999999764
No 440
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=87.08 E-value=6.9 Score=26.02 Aligned_cols=91 Identities=16% Similarity=0.128 Sum_probs=52.5
Q ss_pred eEEEEcccccHHHHH-HHhhCCCCCEEE-EEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 029414 29 KTIEIGVFTGYSLLL-TALTIPEDGQIT-AIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 106 (194)
Q Consensus 29 ~vLeiG~G~G~~~~~-la~~~~~~~~v~-~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~ 106 (194)
+|.-||+|.-..... -.....++.+++ .+|.+++..+.+.+ ..+. . ...|..+.+.. ..+|+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~---~~~~----~-~~~~~~~ll~~--------~~~D~ 65 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAE---KYGI----P-VYTDLEELLAD--------EDVDA 65 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHH---HTTS----E-EESSHHHHHHH--------TTESE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHH---Hhcc----c-chhHHHHHHHh--------hcCCE
Confidence 577889966532222 122222355655 57888766655533 3343 3 44566666554 57999
Q ss_pred EEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414 107 AFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 138 (194)
Q Consensus 107 i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 138 (194)
|++..+.....+. +...++.|-.++++-.
T Consensus 66 V~I~tp~~~h~~~---~~~~l~~g~~v~~EKP 94 (120)
T PF01408_consen 66 VIIATPPSSHAEI---AKKALEAGKHVLVEKP 94 (120)
T ss_dssp EEEESSGGGHHHH---HHHHHHTTSEEEEESS
T ss_pred EEEecCCcchHHH---HHHHHHcCCEEEEEcC
Confidence 9998765544444 4455666667777643
No 441
>PTZ00357 methyltransferase; Provisional
Probab=87.06 E-value=3.2 Score=37.05 Aligned_cols=104 Identities=14% Similarity=0.072 Sum_probs=61.5
Q ss_pred eEEEEcccccHHHHH---HHhhCCCCCEEEEEeCCcchHHhHHHHH---HHcCC-----CCcEEEEecchHHHHHHHhhc
Q 029414 29 KTIEIGVFTGYSLLL---TALTIPEDGQITAIDVNRETYEIGLPII---KKAGV-----DHKINFIESEALSVLDQLLKY 97 (194)
Q Consensus 29 ~vLeiG~G~G~~~~~---la~~~~~~~~v~~iD~~~~~~~~a~~~~---~~~~~-----~~~v~~~~~d~~~~~~~~~~~ 97 (194)
.|+-+|+|-|-.... .++...-..+|+++|-++......+.+. +.+.- .+.|+++..|-.++-......
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 589999999965433 3333333568999999987655555443 22211 346999999987752210000
Q ss_pred ----CCCCCceeEEEEe-----CCccccHHHHHHHHhcccC----CeE
Q 029414 98 ----SENEGSFDYAFVD-----ADKDNYCNYHERLMKLLKV----GGI 132 (194)
Q Consensus 98 ----~~~~~~fD~i~id-----~~~~~~~~~~~~~~~~L~~----gG~ 132 (194)
....+++|+|+.. ++-+--.+-|+.+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 0012479998743 2223344566777777776 675
No 442
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.03 E-value=11 Score=28.26 Aligned_cols=82 Identities=18% Similarity=0.145 Sum_probs=45.2
Q ss_pred CCCeEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcC-CCC
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-ENE 101 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~-~~~ 101 (194)
++++||-.|++ |..+..+++.+ ..+.+|++++.+++..+...+.+...+ ++.++.+|..+. ......+. ...
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG---NIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 45788988875 44444444333 236789999988876665544444322 567777765431 11111100 002
Q ss_pred CceeEEEEeC
Q 029414 102 GSFDYAFVDA 111 (194)
Q Consensus 102 ~~fD~i~id~ 111 (194)
+.+|.++...
T Consensus 80 ~~id~ii~~a 89 (238)
T PRK05786 80 NAIDGLVVTV 89 (238)
T ss_pred CCCCEEEEcC
Confidence 4578887654
No 443
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=87.02 E-value=1.9 Score=33.01 Aligned_cols=75 Identities=16% Similarity=0.296 Sum_probs=38.9
Q ss_pred cccHHH--HHHHhhCC-CCCEEEEEeCCcchH--HhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEe
Q 029414 36 FTGYSL--LLTALTIP-EDGQITAIDVNRETY--EIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD 110 (194)
Q Consensus 36 G~G~~~--~~la~~~~-~~~~v~~iD~~~~~~--~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id 110 (194)
|.|-.| ..+|..+. .+.+|..+|-||..- ...+..-....+++++.+...+-...+.....+ -+...||+|++|
T Consensus 12 GaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~-a~~~~~d~VlvD 90 (231)
T PF07015_consen 12 GAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEA-AEASGFDFVLVD 90 (231)
T ss_pred CCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHH-HHhcCCCEEEEe
Confidence 344433 33444332 368999999888532 222222222234567777766544443332111 012469999999
Q ss_pred C
Q 029414 111 A 111 (194)
Q Consensus 111 ~ 111 (194)
-
T Consensus 91 l 91 (231)
T PF07015_consen 91 L 91 (231)
T ss_pred C
Confidence 4
No 444
>PRK06234 methionine gamma-lyase; Provisional
Probab=86.92 E-value=15 Score=30.50 Aligned_cols=124 Identities=12% Similarity=0.130 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHhHHHHHHHcCCCCcEEEEec-chH
Q 029414 11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRE-TYEIGLPIIKKAGVDHKINFIES-EAL 88 (194)
Q Consensus 11 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~~~~~~v~~~~~-d~~ 88 (194)
++...++-..++.......++-+++|++.....+...+.++.+|+..+..-. ........+...+. ++.++.. |..
T Consensus 63 ~p~~~~Le~~iA~~~g~~~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~--~v~~vd~~d~e 140 (400)
T PRK06234 63 NPTSTEVENKLALLEGGEAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGV--EVTFVDTSNLE 140 (400)
T ss_pred CccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCe--EEEEECCCCHH
Confidence 4556666667777666667888888887665555444555777777664322 22223333444443 3444433 333
Q ss_pred HHHHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhccc---CCeEEEEecccccc
Q 029414 89 SVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLK---VGGIAVYDNTLWGG 142 (194)
Q Consensus 89 ~~~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~---~gG~lv~~~~~~~g 142 (194)
++...+ .+.-.+|++..+ +......++.+.++.+ +|-.+++|++...+
T Consensus 141 ~l~~~i------~~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~ 193 (400)
T PRK06234 141 EVRNAL------KANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTP 193 (400)
T ss_pred HHHHHh------ccCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCch
Confidence 332333 234578887643 1111111333444443 36777888765433
No 445
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=86.77 E-value=15 Score=29.48 Aligned_cols=97 Identities=21% Similarity=0.104 Sum_probs=52.3
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414 25 VNAKKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG 102 (194)
Q Consensus 25 ~~~~~vLeiG~G~G~~~~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 102 (194)
..+.+|+-+|+| ..+..++..+. ...+++.++.+++......+.+ +. ... +..+. .+. -.
T Consensus 176 l~~~~V~ViGaG--~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~---g~----~~~--~~~~~-~~~------l~ 237 (311)
T cd05213 176 LKGKKVLVIGAG--EMGELAAKHLAAKGVAEITIANRTYERAEELAKEL---GG----NAV--PLDEL-LEL------LN 237 (311)
T ss_pred ccCCEEEEECcH--HHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc---CC----eEE--eHHHH-HHH------Hh
Confidence 367899999985 44444333321 1357888999876543333322 32 222 12222 222 14
Q ss_pred ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEeccc
Q 029414 103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 139 (194)
Q Consensus 103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 139 (194)
..|+|+..-..+.+...++.+....+.++.++++-..
T Consensus 238 ~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 238 EADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred cCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCC
Confidence 5899988765444434444444444335788887554
No 446
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=86.76 E-value=6.8 Score=32.86 Aligned_cols=95 Identities=14% Similarity=0.071 Sum_probs=57.9
Q ss_pred CCeEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcCCCCCc
Q 029414 27 AKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGS 103 (194)
Q Consensus 27 ~~~vLeiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~~ 103 (194)
.++++-+|+ |..+..+++.+.. +..++.+|.+++..+..++.. ..+.++.||+.+. +... .-..
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~~~L~~~-----~~~~ 297 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQELLEEE-----GIDE 297 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCHHHHHhc-----CCcc
Confidence 567998888 6666666665532 568999999998877666542 2467788887543 3322 1357
Q ss_pred eeEEEEeCCccccHHHHHHHHhcccCCeEEE
Q 029414 104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAV 134 (194)
Q Consensus 104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv 134 (194)
+|.+++-..............+.+.+.-+++
T Consensus 298 a~~vi~~~~~~~~n~~~~~~~~~~~~~~ii~ 328 (453)
T PRK09496 298 ADAFIALTNDDEANILSSLLAKRLGAKKVIA 328 (453)
T ss_pred CCEEEECCCCcHHHHHHHHHHHHhCCCeEEE
Confidence 8888875443222223333345555553443
No 447
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.72 E-value=8.7 Score=31.04 Aligned_cols=95 Identities=16% Similarity=0.100 Sum_probs=56.2
Q ss_pred CCeEEEEcccc-c-HHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHH-------cCCC-----CcEEEEecchHHHHH
Q 029414 27 AKKTIEIGVFT-G-YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK-------AGVD-----HKINFIESEALSVLD 92 (194)
Q Consensus 27 ~~~vLeiG~G~-G-~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-------~~~~-----~~v~~~~~d~~~~~~ 92 (194)
-++|--||+|+ | .++..++.. +.+|+..|.+++..+.+++.+.. .+.. .++++.. +..
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a---G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~---- 78 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH---GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIE---- 78 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC---CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHH----
Confidence 36789999983 3 344445543 77999999999888776654432 2211 1222221 211
Q ss_pred HHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccCCeEEEE
Q 029414 93 QLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 93 ~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
.. -..-|+|+-... ..--..+++.+.+.++|+.+|..
T Consensus 79 ~a------v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaS 117 (321)
T PRK07066 79 AC------VADADFIQESAPEREALKLELHERISRAAKPDAIIAS 117 (321)
T ss_pred HH------hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 11 145788886544 22345667888888998874444
No 448
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.63 E-value=7.9 Score=33.03 Aligned_cols=118 Identities=19% Similarity=0.214 Sum_probs=66.2
Q ss_pred HHHHHHhhCCCCCEEEEEeCCc-chHHhHHHHHHHcC-C-CCcEEEEe----cchHHHHHHHhhcCCCCCceeEEEEeCC
Q 029414 40 SLLLTALTIPEDGQITAIDVNR-ETYEIGLPIIKKAG-V-DHKINFIE----SEALSVLDQLLKYSENEGSFDYAFVDAD 112 (194)
Q Consensus 40 ~~~~la~~~~~~~~v~~iD~~~-~~~~~a~~~~~~~~-~-~~~v~~~~----~d~~~~~~~~~~~~~~~~~fD~i~id~~ 112 (194)
.+.||.+.-- ..-+.++|.-. .+++..+-+.++.. + +.-|.++. .|+..+....... -..+.||+|++|-.
T Consensus 398 IayWLlqNkf-rVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~vak~AI~~-a~~~gfDVvLiDTA 475 (587)
T KOG0781|consen 398 IAYWLLQNKF-RVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGVAKEAIQE-ARNQGFDVVLIDTA 475 (587)
T ss_pred HHHHHHhCCc-eEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHHHHHHHHH-HHhcCCCEEEEecc
Confidence 4456665422 23355677544 35666666555442 1 12233322 2332222110000 01478999999954
Q ss_pred -----ccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHHHHHHhhcCC
Q 029414 113 -----KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDP 174 (194)
Q Consensus 113 -----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 174 (194)
.+.....+..+.+.-+|+-+|.+-.++-.. + ..+.++.|++.+.+++
T Consensus 476 GR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~-------d--------sv~q~~~fn~al~~~~ 527 (587)
T KOG0781|consen 476 GRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGN-------D--------SVDQLKKFNRALADHS 527 (587)
T ss_pred ccccCChhHHHHHHHHHhcCCCceEEEehhhhhCc-------H--------HHHHHHHHHHHHhcCC
Confidence 233445566667888999999887766322 1 5566899999999876
No 449
>PRK08324 short chain dehydrogenase; Validated
Probab=86.42 E-value=13 Score=33.33 Aligned_cols=79 Identities=15% Similarity=0.141 Sum_probs=45.0
Q ss_pred CCeEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH------HHHHHhhcCC
Q 029414 27 AKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKYSE 99 (194)
Q Consensus 27 ~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~~~~ 99 (194)
++++|-.|++ |..+..+++.+ ..+.+|+.++.+++..+.+.+.+... .++.++..|..+ .+.....
T Consensus 422 gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~--- 494 (681)
T PRK08324 422 GKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAAL--- 494 (681)
T ss_pred CCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHH---
Confidence 4678888853 33333333332 12578999999987776665554332 367777766432 1222111
Q ss_pred CCCceeEEEEeCC
Q 029414 100 NEGSFDYAFVDAD 112 (194)
Q Consensus 100 ~~~~fD~i~id~~ 112 (194)
..+.+|.++....
T Consensus 495 ~~g~iDvvI~~AG 507 (681)
T PRK08324 495 AFGGVDIVVSNAG 507 (681)
T ss_pred HcCCCCEEEECCC
Confidence 1357899887654
No 450
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=86.40 E-value=8.4 Score=30.31 Aligned_cols=92 Identities=13% Similarity=-0.010 Sum_probs=51.5
Q ss_pred eEEEEcccccH--HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC---CcEEEEecchHHHHHHHhhcCCCCCc
Q 029414 29 KTIEIGVFTGY--SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD---HKINFIESEALSVLDQLLKYSENEGS 103 (194)
Q Consensus 29 ~vLeiG~G~G~--~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~~~~ 103 (194)
+|+-+|+|.-. .+..|+.. +..|+.++.+++.++..++ .++. ....... ........ .+.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~---g~~V~~~~r~~~~~~~~~~----~g~~~~~~~~~~~~-~~~~~~~~-------~~~ 66 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA---GHDVTLVARRGAHLDALNE----NGLRLEDGEITVPV-LAADDPAE-------LGP 66 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC---CCeEEEEECChHHHHHHHH----cCCcccCCceeecc-cCCCChhH-------cCC
Confidence 57888886432 22223332 4589999987766554443 2321 1111000 00000111 257
Q ss_pred eeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414 104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
+|+|++-.........++.+.+.+.++..|+.
T Consensus 67 ~d~vila~k~~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 67 QDLVILAVKAYQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred CCEEEEecccccHHHHHHHHhhhcCCCCEEEE
Confidence 99999987666677888888888888766654
No 451
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=86.32 E-value=13 Score=29.33 Aligned_cols=99 Identities=11% Similarity=0.047 Sum_probs=57.9
Q ss_pred HcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc-hHHHHHHHhhcCCC
Q 029414 24 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-ALSVLDQLLKYSEN 100 (194)
Q Consensus 24 ~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~~~~~ 100 (194)
..++.+|+-.|+ +.|..+..+|+.. +.+++.+..+++..+.+++ .+...-+.....+ ..+.+.... .
T Consensus 138 ~~~~~~vlI~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~----~ 207 (334)
T PTZ00354 138 VKKGQSVLIHAGASGVGTAAAQLAEKY--GAATIITTSSEEKVDFCKK----LAAIILIRYPDEEGFAPKVKKLT----G 207 (334)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEecCChhHHHHHHHHHh----C
Confidence 345678888874 5677777888775 4566667777776666543 3432111111112 222222221 1
Q ss_pred CCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 101 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
...+|+++- ... ...+..+++.|+++|.++.-
T Consensus 208 ~~~~d~~i~-~~~---~~~~~~~~~~l~~~g~~i~~ 239 (334)
T PTZ00354 208 EKGVNLVLD-CVG---GSYLSETAEVLAVDGKWIVY 239 (334)
T ss_pred CCCceEEEE-CCc---hHHHHHHHHHhccCCeEEEE
Confidence 246898874 322 24667788999999998863
No 452
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=86.19 E-value=17 Score=29.55 Aligned_cols=96 Identities=20% Similarity=0.249 Sum_probs=54.5
Q ss_pred CCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414 26 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 26 ~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f 104 (194)
++.+++-.|+| .|..+..+|+.. +.+++.++.+++....+.+ ..+.. . .+...+. +.+... ...+
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~--G~~vi~~~~~~~~~~~~~~---~~Ga~-~-~i~~~~~-~~~~~~------~~~~ 245 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSDKKREEALE---HLGAD-D-YLVSSDA-AEMQEA------ADSL 245 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHH---hcCCc-E-EecCCCh-HHHHHh------cCCC
Confidence 56788877754 355666677764 4578888877655444333 23432 1 1111221 222222 2458
Q ss_pred eEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414 105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 138 (194)
Q Consensus 105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 138 (194)
|+++-... ....++.+.+.++++|.++.-..
T Consensus 246 D~vid~~g---~~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 246 DYIIDTVP---VFHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred cEEEECCC---chHHHHHHHHHhccCCEEEEECC
Confidence 87763221 12456778899999999987543
No 453
>PRK05967 cystathionine beta-lyase; Provisional
Probab=86.05 E-value=19 Score=30.04 Aligned_cols=121 Identities=15% Similarity=0.119 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414 11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRE-TYEIGLPIIKKAGVDHKINFIESEALS 89 (194)
Q Consensus 11 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~ 89 (194)
+|-...+-..++........+-+.+|.+.....+...+.++.+|+..+..-. ....+++.++..+. +++++..+..+
T Consensus 63 nPt~~~Le~~la~le~~~~~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi--~v~~vd~~~~e 140 (395)
T PRK05967 63 TPTTDALCKAIDALEGSAGTILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGV--EVEYYDPEIGA 140 (395)
T ss_pred ChHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCe--EEEEeCCCCHH
Confidence 4444444445555555555677888877766666555666888888765443 23334455565664 46666443334
Q ss_pred HHHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccCCe-EEEEecc
Q 029414 90 VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGG-IAVYDNT 138 (194)
Q Consensus 90 ~~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~gG-~lv~~~~ 138 (194)
.+.... .+.-.+|++..+ ..-....++.+.+..+..| .+++|++
T Consensus 141 ~l~~al-----~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t 187 (395)
T PRK05967 141 GIAKLM-----RPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNT 187 (395)
T ss_pred HHHHhc-----CcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECC
Confidence 333322 244678988854 3334555677777666555 4555555
No 454
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=85.98 E-value=9.9 Score=30.16 Aligned_cols=97 Identities=14% Similarity=0.126 Sum_probs=56.8
Q ss_pred HcCCCeEEEEccc-ccHHHHHHHhhCCCCCE-EEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHH-HHhhcCCC
Q 029414 24 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD-QLLKYSEN 100 (194)
Q Consensus 24 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~~~ 100 (194)
..++.+||-+|+| .|..+..+|+.. +.+ ++.++.+++..+.+++ .+.+ .++..+...... ... .
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~----~ 223 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLN--GASRVTVAEPNEEKLELAKK----LGAT---ETVDPSREDPEAQKED----N 223 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCCe---EEecCCCCCHHHHHHh----c
Confidence 4456788888865 356667777764 344 8888888877666543 2432 222222111111 111 1
Q ss_pred CCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 101 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
.+.+|+++-... ....+..+++.|+++|.++.-
T Consensus 224 ~~~vd~v~~~~~---~~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 224 PYGFDVVIEATG---VPKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred CCCCcEEEECCC---ChHHHHHHHHHHhcCCEEEEE
Confidence 356998875321 134567778999999998863
No 455
>PRK09028 cystathionine beta-lyase; Provisional
Probab=85.94 E-value=19 Score=29.98 Aligned_cols=119 Identities=12% Similarity=0.067 Sum_probs=64.1
Q ss_pred HHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc-chHHhHHHHHHHcCCCCcEEEEecchHHHHHHH
Q 029414 16 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNR-ETYEIGLPIIKKAGVDHKINFIESEALSVLDQL 94 (194)
Q Consensus 16 ~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 94 (194)
.+=..++.......++-..+|+......+...+.++.+|+..+..- .....+...+...+. .+.++..+..+.+...
T Consensus 65 ~Le~~iA~le~~~~~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi--~v~~v~~~~~e~l~~~ 142 (394)
T PRK09028 65 AFQAAIVELEGGAGTALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGI--ETTYYDPMIGEGIREL 142 (394)
T ss_pred HHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcce--EEEEECCCCHHHHHHh
Confidence 3334444444555677777777665544433455688888887653 333444444555554 3444433323333332
Q ss_pred hhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccCC-eEEEEeccccc
Q 029414 95 LKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVG-GIAVYDNTLWG 141 (194)
Q Consensus 95 ~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~g-G~lv~~~~~~~ 141 (194)
. .+.-.+|++..+ +......++.+.++.+.. ..+++|++...
T Consensus 143 l-----~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~ 187 (394)
T PRK09028 143 I-----RPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWAS 187 (394)
T ss_pred c-----CcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCccc
Confidence 1 244678888754 223345566666666654 45556665543
No 456
>PRK07877 hypothetical protein; Provisional
Probab=85.83 E-value=11 Score=34.11 Aligned_cols=80 Identities=11% Similarity=0.096 Sum_probs=48.2
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCC-CEEEEEeCCcc------------------hHHhHHHHHHHcCCCCcEEEEecc
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPED-GQITAIDVNRE------------------TYEIGLPIIKKAGVDHKINFIESE 86 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~~-~~v~~iD~~~~------------------~~~~a~~~~~~~~~~~~v~~~~~d 86 (194)
+..+|+-+|||.|........... . ++++.+|.+.- ..+.+++++.+.+-.-+|+.+...
T Consensus 106 ~~~~V~IvG~GlGs~~a~~LaraG-vvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~ 184 (722)
T PRK07877 106 GRLRIGVVGLSVGHAIAHTLAAEG-LCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDG 184 (722)
T ss_pred hcCCEEEEEecHHHHHHHHHHHcc-CCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 567899999998875554433322 3 68888886541 234566666665533456666554
Q ss_pred hH-HHHHHHhhcCCCCCceeEEEEeCC
Q 029414 87 AL-SVLDQLLKYSENEGSFDYAFVDAD 112 (194)
Q Consensus 87 ~~-~~~~~~~~~~~~~~~fD~i~id~~ 112 (194)
.. +.+..+ ...+|+|+-..+
T Consensus 185 i~~~n~~~~------l~~~DlVvD~~D 205 (722)
T PRK07877 185 LTEDNVDAF------LDGLDVVVEECD 205 (722)
T ss_pred CCHHHHHHH------hcCCCEEEECCC
Confidence 33 234444 256998875554
No 457
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.75 E-value=12 Score=29.74 Aligned_cols=93 Identities=22% Similarity=0.117 Sum_probs=51.7
Q ss_pred CeEEEEcccccH--HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc-CC--C--------CcEEEEecchHHHHHHH
Q 029414 28 KKTIEIGVFTGY--SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-GV--D--------HKINFIESEALSVLDQL 94 (194)
Q Consensus 28 ~~vLeiG~G~G~--~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~--~--------~~v~~~~~d~~~~~~~~ 94 (194)
++|.-||+|.=. .+..++.. +.+|+.+|.+++.++.+++.+... +. + .++++. .+..+.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~---g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~---- 76 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK---GLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRME-AGLAAA---- 76 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEe-CCHHHH----
Confidence 568888887533 33333332 568999999999888877653221 10 0 112221 122111
Q ss_pred hhcCCCCCceeEEEEeCCcc--ccHHHHHHHHhcccCCeEEE
Q 029414 95 LKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAV 134 (194)
Q Consensus 95 ~~~~~~~~~fD~i~id~~~~--~~~~~~~~~~~~L~~gG~lv 134 (194)
....|+|+...... ....+++.+.+.++++.+++
T Consensus 77 ------~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~ 112 (311)
T PRK06130 77 ------VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFA 112 (311)
T ss_pred ------hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEE
Confidence 14579998865432 24566777766666655443
No 458
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=85.66 E-value=14 Score=28.38 Aligned_cols=88 Identities=17% Similarity=0.118 Sum_probs=47.1
Q ss_pred CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcc-------------------hHHhHHHHHHHcCCCCcEEEEec
Q 029414 26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRE-------------------TYEIGLPIIKKAGVDHKINFIES 85 (194)
Q Consensus 26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~-------------------~~~~a~~~~~~~~~~~~v~~~~~ 85 (194)
+..+|+-+|+|. |...+..+.... -++++.+|.+.- ..+.+++.+.+.+..-+++.+..
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~ 101 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAG-VGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINA 101 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcC-CCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence 457899999974 554444333333 578888886542 22345566655543224444443
Q ss_pred chHH-HHHHHhhcCCCCCceeEEEEeCCccccHHHH
Q 029414 86 EALS-VLDQLLKYSENEGSFDYAFVDADKDNYCNYH 120 (194)
Q Consensus 86 d~~~-~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~ 120 (194)
...+ ...++ ...+|+|+...+.......+
T Consensus 102 ~i~~~~~~~~------~~~~DlVvd~~D~~~~r~~l 131 (240)
T TIGR02355 102 KLDDAELAAL------IAEHDIVVDCTDNVEVRNQL 131 (240)
T ss_pred cCCHHHHHHH------hhcCCEEEEcCCCHHHHHHH
Confidence 3222 23333 25799888655433333333
No 459
>PRK08328 hypothetical protein; Provisional
Probab=85.59 E-value=13 Score=28.32 Aligned_cols=35 Identities=23% Similarity=0.201 Sum_probs=23.0
Q ss_pred CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc
Q 029414 26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNR 61 (194)
Q Consensus 26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~ 61 (194)
+..+|+-+|||. |...+..+...+ -++++.+|.+.
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~G-vg~i~lvD~D~ 61 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAG-VGRILLIDEQT 61 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCc
Confidence 467899999984 544444333333 57899998653
No 460
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=85.58 E-value=11 Score=29.95 Aligned_cols=100 Identities=23% Similarity=0.259 Sum_probs=60.1
Q ss_pred HcCCCeEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414 24 LVNAKKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 101 (194)
Q Consensus 24 ~~~~~~vLeiG~G--~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 101 (194)
..++.+||-.|++ .|..+..+|+.. +.+++.+..+++..+.++ ..+...-+.....+..+.+..+. ..
T Consensus 163 ~~~~~~vlV~g~~~~vg~~~~~~a~~~--g~~v~~~~~~~~~~~~~~----~~g~~~v~~~~~~~~~~~~~~~~----~~ 232 (341)
T cd08297 163 LKPGDWVVISGAGGGLGHLGVQYAKAM--GLRVIAIDVGDEKLELAK----ELGADAFVDFKKSDDVEAVKELT----GG 232 (341)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHH----HcCCcEEEcCCCccHHHHHHHHh----cC
Confidence 4456788888875 567777888875 468999988876665543 23432111111113323333321 12
Q ss_pred CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
+.+|+++-+... ...+..+++.++++|.++.-
T Consensus 233 ~~vd~vl~~~~~---~~~~~~~~~~l~~~g~~v~~ 264 (341)
T cd08297 233 GGAHAVVVTAVS---AAAYEQALDYLRPGGTLVCV 264 (341)
T ss_pred CCCCEEEEcCCc---hHHHHHHHHHhhcCCEEEEe
Confidence 569988753322 23466778999999999964
No 461
>PRK08655 prephenate dehydrogenase; Provisional
Probab=85.57 E-value=5.2 Score=33.77 Aligned_cols=87 Identities=14% Similarity=0.097 Sum_probs=44.8
Q ss_pred eEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 029414 29 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 107 (194)
Q Consensus 29 ~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i 107 (194)
+|.=+| |.|..+..++..+. .+.+|++++.+++..... ....+. .. ..+..+. ....|+|
T Consensus 2 kI~IIG-G~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~---a~~~gv----~~-~~~~~e~----------~~~aDvV 62 (437)
T PRK08655 2 KISIIG-GTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEV---AKELGV----EY-ANDNIDA----------AKDADIV 62 (437)
T ss_pred EEEEEe-cCCHHHHHHHHHHHHCCCEEEEEECChHHHHHH---HHHcCC----ee-ccCHHHH----------hccCCEE
Confidence 466676 23444444444332 145789999887553221 222222 11 1122111 1346888
Q ss_pred EEeCCccccHHHHHHHHhcccCCeEEE
Q 029414 108 FVDADKDNYCNYHERLMKLLKVGGIAV 134 (194)
Q Consensus 108 ~id~~~~~~~~~~~~~~~~L~~gG~lv 134 (194)
++..+.......++.+.+.+++|.+++
T Consensus 63 Ilavp~~~~~~vl~~l~~~l~~~~iVi 89 (437)
T PRK08655 63 IISVPINVTEDVIKEVAPHVKEGSLLM 89 (437)
T ss_pred EEecCHHHHHHHHHHHHhhCCCCCEEE
Confidence 876665555666677777777665443
No 462
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=85.55 E-value=7.5 Score=25.31 Aligned_cols=71 Identities=11% Similarity=0.039 Sum_probs=42.5
Q ss_pred CeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 029414 28 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 107 (194)
Q Consensus 28 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i 107 (194)
++|| +-||+|.+|..++..+ ++.++..+++ +++...+..+.... ...+|+|
T Consensus 4 ~~IL-l~C~~G~sSS~l~~k~-------------------~~~~~~~gi~--~~v~a~~~~~~~~~-------~~~~Dvi 54 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVNKM-------------------NKAAEEYGVP--VKIAAGSYGAAGEK-------LDDADVV 54 (95)
T ss_pred cEEE-EECCCchhHHHHHHHH-------------------HHHHHHCCCc--EEEEEecHHHHHhh-------cCCCCEE
Confidence 4454 6677787776666532 4555666764 77777777665333 3579999
Q ss_pred EEeCCccccHHHHHHHHhcccCC
Q 029414 108 FVDADKDNYCNYHERLMKLLKVG 130 (194)
Q Consensus 108 ~id~~~~~~~~~~~~~~~~L~~g 130 (194)
++.+.... .++.+.+...+-
T Consensus 55 ll~pqi~~---~~~~i~~~~~~~ 74 (95)
T TIGR00853 55 LLAPQVAY---MLPDLKKETDKK 74 (95)
T ss_pred EECchHHH---HHHHHHHHhhhc
Confidence 98764333 344554555443
No 463
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=85.55 E-value=17 Score=29.13 Aligned_cols=95 Identities=19% Similarity=0.238 Sum_probs=55.1
Q ss_pred CCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec---chHHHHHHHhhcCCCC
Q 029414 26 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKYSENE 101 (194)
Q Consensus 26 ~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~~~~~~~~~ 101 (194)
++.+||-.|+| .|..+..+|+... -.++++++.+++..+.+++ .+.. .++.. +..+.+.... .
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~-----~ 241 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALG-PANIIVVDIDEAKLEAAKA----AGAD---VVVNGSDPDAAKRIIKAA-----G 241 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCc---EEecCCCccHHHHHHHHh-----C
Confidence 56778888764 3455566777653 2378888888777666533 2432 22221 1122222221 1
Q ss_pred CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
+.+|+++ +.... ...+..+++.|+++|.++.-
T Consensus 242 ~~~d~vi-d~~g~--~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 242 GGVDAVI-DFVNN--SATASLAFDILAKGGKLVLV 273 (350)
T ss_pred CCCcEEE-ECCCC--HHHHHHHHHHhhcCCeEEEE
Confidence 2689887 43211 23577788999999999863
No 464
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=85.30 E-value=3.1 Score=26.01 Aligned_cols=35 Identities=23% Similarity=0.269 Sum_probs=19.9
Q ss_pred cCCCeEEEEcccccH-HHHHHHhhCCCCCEEEEEeC
Q 029414 25 VNAKKTIEIGVFTGY-SLLLTALTIPEDGQITAIDV 59 (194)
Q Consensus 25 ~~~~~vLeiG~G~G~-~~~~la~~~~~~~~v~~iD~ 59 (194)
..|++||-+|+.+|+ .+..++..+..+...+++-.
T Consensus 37 ~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~f 72 (78)
T PF12242_consen 37 NGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSF 72 (78)
T ss_dssp TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE-
T ss_pred CCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEee
Confidence 457899999999998 44344444443566666544
No 465
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=85.16 E-value=0.8 Score=35.99 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=31.0
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchH
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY 64 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~ 64 (194)
...+++|||+|||+|.-.+...... ...++..|.+.+.+
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~--~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKG--AVSVHFQDFNAEVL 152 (282)
T ss_pred EecCceeEecCCcccccchhhhhhc--cceeeeEecchhhe
Confidence 3478999999999999888776642 36788888888776
No 466
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=85.12 E-value=3.1 Score=33.18 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=36.6
Q ss_pred HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHH
Q 029414 24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK 73 (194)
Q Consensus 24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~ 73 (194)
...+++|+-+|+|......++++. ..+|+++|+++..+..-+-+++.
T Consensus 61 ~g~ghrivtigSGGcn~L~ylsr~---Pa~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 61 LGIGHRIVTIGSGGCNMLAYLSRA---PARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred cCCCcEEEEecCCcchHHHHhhcC---CceeEEEeCCHHHHHHHHHHHHH
Confidence 456789999999987777777764 57999999999887766655544
No 467
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=85.00 E-value=0.73 Score=38.72 Aligned_cols=103 Identities=14% Similarity=0.066 Sum_probs=59.1
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc--hH-HHHHHHhhcCCCC
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE--AL-SVLDQLLKYSENE 101 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d--~~-~~~~~~~~~~~~~ 101 (194)
++..+.++|+|.|.-........+. .-.++.||.+..+......+.....- +-..+... .. ..++. +..
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~--~g~~~v~~~~~~r~~~pi-----~~~ 272 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSH--IGEPIVRKLVFHRQRLPI-----DIK 272 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhh--cCchhccccchhcccCCC-----Ccc
Confidence 5678999999877644333333332 35689999999988887777654110 11111111 11 11122 124
Q ss_pred CceeEEEEeCC------ccccHHHHHHH-HhcccCCeEEEE
Q 029414 102 GSFDYAFVDAD------KDNYCNYHERL-MKLLKVGGIAVY 135 (194)
Q Consensus 102 ~~fD~i~id~~------~~~~~~~~~~~-~~~L~~gG~lv~ 135 (194)
..||++++... ........+.. .+..++|+.+|+
T Consensus 273 ~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lVi 313 (491)
T KOG2539|consen 273 NGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVI 313 (491)
T ss_pred cceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEE
Confidence 57999987743 22333334444 467789999887
No 468
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=84.97 E-value=15 Score=30.04 Aligned_cols=80 Identities=20% Similarity=0.046 Sum_probs=44.4
Q ss_pred CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc-------------------chHHhHHHHHHHcCCCCcEEEEec
Q 029414 26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIES 85 (194)
Q Consensus 26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~ 85 (194)
+..+||-+|||. |...+....... -++++.+|.+. ...+.+++++.+.+..-+++.+..
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~ 105 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAG-VGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVR 105 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEe
Confidence 567899999985 443333222322 57888888765 233556667766543333444433
Q ss_pred chHH-HHHHHhhcCCCCCceeEEEEeCC
Q 029414 86 EALS-VLDQLLKYSENEGSFDYAFVDAD 112 (194)
Q Consensus 86 d~~~-~~~~~~~~~~~~~~fD~i~id~~ 112 (194)
.... ....+ ...||+|+...+
T Consensus 106 ~i~~~~~~~~------~~~~DvVvd~~d 127 (355)
T PRK05597 106 RLTWSNALDE------LRDADVILDGSD 127 (355)
T ss_pred ecCHHHHHHH------HhCCCEEEECCC
Confidence 3321 12222 257998876554
No 469
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=84.81 E-value=21 Score=29.47 Aligned_cols=125 Identities=14% Similarity=0.060 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHhHHHHHHHcCCCCcEEEEecchHHH
Q 029414 12 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRE-TYEIGLPIIKKAGVDHKINFIESEALSV 90 (194)
Q Consensus 12 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 90 (194)
|....+=..++.......++-..+|++.....+...+.++.+|+..+..-. ....+.......+. +++++..+..+.
T Consensus 50 Pt~~~lE~~lA~l~g~~~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi--~v~~~d~~~~e~ 127 (377)
T TIGR01324 50 LTHFALQDAMCELEGGAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGV--DITYYDPLIGED 127 (377)
T ss_pred ccHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCc--EEEEECCCCHHH
Confidence 444455555555556667777777777666555444555778887765432 22223333444443 344442222133
Q ss_pred HHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccC-CeEEEEeccccccc
Q 029414 91 LDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKV-GGIAVYDNTLWGGT 143 (194)
Q Consensus 91 ~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~~g~ 143 (194)
+.... .+...+|++... .......++.+.++.+. |..+++|++...|.
T Consensus 128 l~~~i-----~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~ 178 (377)
T TIGR01324 128 IATLI-----QPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGL 178 (377)
T ss_pred HHHhc-----CCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccc
Confidence 33321 245678888754 23334456666666655 45566677655443
No 470
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=84.74 E-value=12 Score=26.70 Aligned_cols=117 Identities=19% Similarity=0.150 Sum_probs=63.4
Q ss_pred eEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 029414 29 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA 107 (194)
Q Consensus 29 ~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i 107 (194)
+|-=||. |..+..+|+.+. .+..|+..|.+++..+...+. + ++.. .+..+... ..|+|
T Consensus 3 ~Ig~IGl--G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~----g----~~~~-~s~~e~~~----------~~dvv 61 (163)
T PF03446_consen 3 KIGFIGL--GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA----G----AEVA-DSPAEAAE----------QADVV 61 (163)
T ss_dssp EEEEE----SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT----T----EEEE-SSHHHHHH----------HBSEE
T ss_pred EEEEEch--HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh----h----hhhh-hhhhhHhh----------cccce
Confidence 4555666 555555555442 267899999988666554432 2 3333 34444433 35888
Q ss_pred EEeCC-ccccHHHHHH--HHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEEEeeecC
Q 029414 108 FVDAD-KDNYCNYHER--LMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG 184 (194)
Q Consensus 108 ~id~~-~~~~~~~~~~--~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~ 184 (194)
+..-. .....+.+.. +...|++|.+++-.... .....+++.+.+.. .++...--|+.
T Consensus 62 i~~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~-------------------~p~~~~~~~~~~~~-~g~~~vdapV~ 121 (163)
T PF03446_consen 62 ILCVPDDDAVEAVLFGENILAGLRPGKIIIDMSTI-------------------SPETSRELAERLAA-KGVRYVDAPVS 121 (163)
T ss_dssp EE-SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS---------------------HHHHHHHHHHHHH-TTEEEEEEEEE
T ss_pred EeecccchhhhhhhhhhHHhhccccceEEEecCCc-------------------chhhhhhhhhhhhh-ccceeeeeeee
Confidence 87654 3455666666 77888887777654332 11224555555543 44777777765
Q ss_pred Ce
Q 029414 185 DG 186 (194)
Q Consensus 185 ~G 186 (194)
.|
T Consensus 122 Gg 123 (163)
T PF03446_consen 122 GG 123 (163)
T ss_dssp SH
T ss_pred cc
Confidence 44
No 471
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=84.63 E-value=22 Score=29.64 Aligned_cols=100 Identities=15% Similarity=0.156 Sum_probs=52.7
Q ss_pred eEEEEcccc-cH-HHHHHHhhCCCCCEEEEEeCCcchHHhHHHH------------HHHcCCCCcEEEEecchHHHHHHH
Q 029414 29 KTIEIGVFT-GY-SLLLTALTIPEDGQITAIDVNRETYEIGLPI------------IKKAGVDHKINFIESEALSVLDQL 94 (194)
Q Consensus 29 ~vLeiG~G~-G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~------------~~~~~~~~~v~~~~~d~~~~~~~~ 94 (194)
+|--+|+|. |. .+..||+. +..|+|+|+++..++..++. +.+.....++++- .|..+..
T Consensus 2 kI~viGtGYVGLv~g~~lA~~---GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fT-td~~~a~--- 74 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAEL---GHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFT-TDYEEAV--- 74 (414)
T ss_pred ceEEECCchHHHHHHHHHHHc---CCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEE-cCHHHHH---
Confidence 455666643 21 23334443 46899999999877654432 2222212223333 2332221
Q ss_pred hhcCCCCCceeEEEEeCC---c-------cccHHHHHHHHhcccCCeEEEEecccccc
Q 029414 95 LKYSENEGSFDYAFVDAD---K-------DNYCNYHERLMKLLKVGGIAVYDNTLWGG 142 (194)
Q Consensus 95 ~~~~~~~~~fD~i~id~~---~-------~~~~~~~~~~~~~L~~gG~lv~~~~~~~g 142 (194)
..-|++|+.-. . ....+..+.+.+.++..-++|.-.+...|
T Consensus 75 -------~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvG 125 (414)
T COG1004 75 -------KDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVG 125 (414)
T ss_pred -------hcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCC
Confidence 34678887643 1 12244456666777776777776555444
No 472
>PRK07582 cystathionine gamma-lyase; Validated
Probab=84.50 E-value=19 Score=29.52 Aligned_cols=118 Identities=12% Similarity=0.066 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc-chHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414 11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNR-ETYEIGLPIIKKAGVDHKINFIESEALS 89 (194)
Q Consensus 11 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 89 (194)
++....+-..++... +..++-+++|+......+...+.++.+|+..+..- .....++..+...|. ++.++..+...
T Consensus 50 ~p~~~~Le~~lA~l~-~~~~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~--~v~~v~~~~~~ 126 (366)
T PRK07582 50 NPTWRALEAALGELE-GAEALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGV--TVREAPTAGMA 126 (366)
T ss_pred CccHHHHHHHHHHHc-CCCEEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeE--EEEEECCCChH
Confidence 455566666666666 56677788888766555544455577888876544 233344444444553 34444332211
Q ss_pred HHHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhccc-CCeEEEEeccc
Q 029414 90 VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLK-VGGIAVYDNTL 139 (194)
Q Consensus 90 ~~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~-~gG~lv~~~~~ 139 (194)
... .+..++|++..+ +......++.+.+..+ .|..+++|++.
T Consensus 127 --~~~------~~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~ 171 (366)
T PRK07582 127 --EAA------LAGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTT 171 (366)
T ss_pred --HHh------ccCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCC
Confidence 111 245688887644 1111223455555554 35667777764
No 473
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=84.25 E-value=22 Score=29.40 Aligned_cols=124 Identities=12% Similarity=0.125 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHhHHHHHHHcCCCCcEEEEecchH
Q 029414 10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRE-TYEIGLPIIKKAGVDHKINFIESEAL 88 (194)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~~~~~~v~~~~~d~~ 88 (194)
.+|...++-..++........+-+++|+......+...+.++.+|+..+.... .....+..+...|. .+.++..+..
T Consensus 57 ~~p~~~~le~~lA~l~g~~~av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~--~~~~vd~~d~ 134 (391)
T TIGR01328 57 GNPTVSNLEGRIAFLEGTEAAVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGI--QVDFINMAIP 134 (391)
T ss_pred CCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCe--EEEEECCCCH
Confidence 34556666666777666666777777776555555444555777877664322 33333444444443 3444443322
Q ss_pred HHHHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccC-CeEEEEecccc
Q 029414 89 SVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKV-GGIAVYDNTLW 140 (194)
Q Consensus 89 ~~~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~ 140 (194)
+.+.... .+.-.+|++..+ .......++.+.++.+. |..+++|++..
T Consensus 135 e~l~~~i-----~~~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a 184 (391)
T TIGR01328 135 EEVKAHI-----KDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFA 184 (391)
T ss_pred HHHHHhh-----ccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCc
Confidence 3232221 234678887643 11111123444444443 45666676653
No 474
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=84.16 E-value=19 Score=28.59 Aligned_cols=102 Identities=22% Similarity=0.179 Sum_probs=52.9
Q ss_pred HcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec---chHHHHHHHhhcC
Q 029414 24 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKYS 98 (194)
Q Consensus 24 ~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~~~~~~ 98 (194)
..++.+||-.|+ +.|..+..+|+.. +.+++.+..+++..+.-++.+...+...-+..... +..+.+..+.
T Consensus 144 ~~~g~~vlI~g~~g~vg~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~--- 218 (341)
T cd08290 144 LQPGDWVIQNGANSAVGQAVIQLAKLL--GIKTINVVRDRPDLEELKERLKALGADHVLTEEELRSLLATELLKSAP--- 218 (341)
T ss_pred cCCCCEEEEccchhHHHHHHHHHHHHc--CCeEEEEEcCCCcchhHHHHHHhcCCCEEEeCcccccccHHHHHHHHc---
Confidence 446778888874 5677777788875 45655554444222222333333443211111111 2222222221
Q ss_pred CCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 99 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 99 ~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
.+.+|+|+ |.... ..+..+++.|+++|.++.-
T Consensus 219 --~~~~d~vl-d~~g~---~~~~~~~~~l~~~G~~v~~ 250 (341)
T cd08290 219 --GGRPKLAL-NCVGG---KSATELARLLSPGGTMVTY 250 (341)
T ss_pred --CCCceEEE-ECcCc---HhHHHHHHHhCCCCEEEEE
Confidence 12689887 43222 1234567889999998853
No 475
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=84.05 E-value=5.2 Score=33.13 Aligned_cols=59 Identities=17% Similarity=0.244 Sum_probs=45.7
Q ss_pred CcEEEEecchHHHHHHHhhcCCCCCceeEEEE-eCC----ccccHHHHHHHHhcccCCeEEEEeccccc
Q 029414 78 HKINFIESEALSVLDQLLKYSENEGSFDYAFV-DAD----KDNYCNYHERLMKLLKVGGIAVYDNTLWG 141 (194)
Q Consensus 78 ~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~i-d~~----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~ 141 (194)
+++++++++..+.+.... .+++|.+.+ |.. .+...+.++.+.+.++|||.+++.+....
T Consensus 275 drv~i~t~si~~~L~~~~-----~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLP-----PGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred CeEEEEeccHHHHHHhCC-----CCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 599999999999887642 478998754 332 45667778889999999999999776543
No 476
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=83.99 E-value=3.6 Score=31.93 Aligned_cols=106 Identities=15% Similarity=0.120 Sum_probs=66.7
Q ss_pred CCeEEEEcccccHHHHHHHhhCCC-----------CCEEEEEeCCcchHHhHH------------HHHH-----------
Q 029414 27 AKKTIEIGVFTGYSLLLTALTIPE-----------DGQITAIDVNRETYEIGL------------PIIK----------- 72 (194)
Q Consensus 27 ~~~vLeiG~G~G~~~~~la~~~~~-----------~~~v~~iD~~~~~~~~a~------------~~~~----------- 72 (194)
.-.|+|+|-|+|...+.+-...+. .-++++++.+|-...... +.+.
T Consensus 59 ~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~ 138 (252)
T COG4121 59 ILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCA 138 (252)
T ss_pred ceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhH
Confidence 347999999999877665444431 235788888774322111 1111
Q ss_pred ---HcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCcc--c----cHHHHHHHHhcccCCeEEEEe
Q 029414 73 ---KAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--N----YCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 73 ---~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~--~----~~~~~~~~~~~L~~gG~lv~~ 136 (194)
..+ .-+..++.||+.+.++..... .+++|+.|.|+..+ + ...++..+.+..++||.+...
T Consensus 139 r~~~~g-~~~l~l~~gd~~~~~p~~~~~---~~~~dAwflDgFsP~kNP~mW~~e~l~~~a~~~~~~~~l~t~ 207 (252)
T COG4121 139 AAVRHG-LLLLGLVIGDAGDGIPPVPRR---RPGTDAWFLDGFRPVKNPEMWEDELLNLMARIPYRDPTLATF 207 (252)
T ss_pred Hhhhcc-hheeeeeeeehhhcCCccccc---ccCccEEecCCccccCChhhccHHHHHHHHhhcCCCCceech
Confidence 112 124667888888776665211 12799999997621 1 256688888999999999874
No 477
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=83.30 E-value=15 Score=26.69 Aligned_cols=76 Identities=21% Similarity=0.125 Sum_probs=40.2
Q ss_pred eEEEEcccc-cHH-HHHHHhhCCCCCEEEEEeCCc------------------chHHhHHHHHHHcCCCCcEEEEecchH
Q 029414 29 KTIEIGVFT-GYS-LLLTALTIPEDGQITAIDVNR------------------ETYEIGLPIIKKAGVDHKINFIESEAL 88 (194)
Q Consensus 29 ~vLeiG~G~-G~~-~~~la~~~~~~~~v~~iD~~~------------------~~~~~a~~~~~~~~~~~~v~~~~~d~~ 88 (194)
+|+-+|||. |.. +..+++. + -++++.+|.+. ...+.+++++.+....-+++.+.....
T Consensus 1 ~VlViG~GglGs~ia~~La~~-G-vg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~ 78 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-G-VGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKID 78 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-C-CCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecC
Confidence 478899974 443 3334443 2 46899999875 122344555554432224444443332
Q ss_pred H-HHHHHhhcCCCCCceeEEEEeCC
Q 029414 89 S-VLDQLLKYSENEGSFDYAFVDAD 112 (194)
Q Consensus 89 ~-~~~~~~~~~~~~~~fD~i~id~~ 112 (194)
+ ....+ -..+|+|+...+
T Consensus 79 ~~~~~~~------l~~~DlVi~~~d 97 (174)
T cd01487 79 ENNLEGL------FGDCDIVVEAFD 97 (174)
T ss_pred hhhHHHH------hcCCCEEEECCC
Confidence 2 22333 257998876543
No 478
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=83.16 E-value=13 Score=30.71 Aligned_cols=122 Identities=15% Similarity=0.069 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHhHHHHHHHcCCCCcEEEEec-chH
Q 029414 11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRE-TYEIGLPIIKKAGVDHKINFIES-EAL 88 (194)
Q Consensus 11 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~~~~~~v~~~~~-d~~ 88 (194)
++...++-..++........+-+++|+......+...+.++.+|+..+..-. ........+...+. ++.+... |..
T Consensus 60 ~p~~~~Le~~lA~~~g~~~~i~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi--~~~~~d~~d~e 137 (388)
T PRK07811 60 NPTRTALEEQLAALEGGAYGRAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGV--EYTPVDLSDLD 137 (388)
T ss_pred CccHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCe--EEEEeCCCCHH
Confidence 3455666666666666566677777765555444444555778887665332 22222222222232 2333222 333
Q ss_pred HHHHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccC-CeEEEEecccc
Q 029414 89 SVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKV-GGIAVYDNTLW 140 (194)
Q Consensus 89 ~~~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~ 140 (194)
++...+ .+...+|++..+ +......++.+.++.+. |..+++|++..
T Consensus 138 ~l~~~i------~~~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a 186 (388)
T PRK07811 138 AVRAAI------TPRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFA 186 (388)
T ss_pred HHHHhc------CcCCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCC
Confidence 332222 235678887643 21122334445454444 55666776543
No 479
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=83.08 E-value=27 Score=29.47 Aligned_cols=128 Identities=13% Similarity=0.181 Sum_probs=72.5
Q ss_pred CCCeEEEEcc-ccc--HHHHHHHhhCC---CCCEEEEEeCC-cchHHhHHHHHHHcCCCCcEEE-EecchHHHHHHHhhc
Q 029414 26 NAKKTIEIGV-FTG--YSLLLTALTIP---EDGQITAIDVN-RETYEIGLPIIKKAGVDHKINF-IESEALSVLDQLLKY 97 (194)
Q Consensus 26 ~~~~vLeiG~-G~G--~~~~~la~~~~---~~~~v~~iD~~-~~~~~~a~~~~~~~~~~~~v~~-~~~d~~~~~~~~~~~ 97 (194)
+|..|+-+|- |+| .++.-+|..+. ...-+++.|.. |.+++..+...++.+++ -... -..|+.++...-...
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~-~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVP-FFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCc-eecCCCCCCHHHHHHHHHHH
Confidence 4567888874 333 23333444432 24568888965 45677777777777654 1111 112333332221000
Q ss_pred CCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHHHHHHh
Q 029414 98 SENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSL 170 (194)
Q Consensus 98 ~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l 170 (194)
-....||+|++|-. .+....-+..+...++|+=+|++-|....- . .....++|++.+
T Consensus 178 -ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQ-------d--------A~~~A~aF~e~l 239 (451)
T COG0541 178 -AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQ-------D--------AVNTAKAFNEAL 239 (451)
T ss_pred -HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccch-------H--------HHHHHHHHhhhc
Confidence 01367999999965 233445567778899999888776654211 1 444478888877
No 480
>PRK08223 hypothetical protein; Validated
Probab=82.98 E-value=22 Score=28.30 Aligned_cols=78 Identities=17% Similarity=0.098 Sum_probs=44.2
Q ss_pred CCCeEEEEcccc-cHH-HHHHHhhCCCCCEEEEEeCCc-------------------chHHhHHHHHHHcCCCCcEEEEe
Q 029414 26 NAKKTIEIGVFT-GYS-LLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIE 84 (194)
Q Consensus 26 ~~~~vLeiG~G~-G~~-~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~ 84 (194)
+..+|+-+|||. |.. +..||.. . -++++.+|.+. ...+.+++.+.+.+..-+++.+.
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~a-G-VG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~ 103 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARL-G-IGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFP 103 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHh-C-CCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 567899999984 554 4445544 3 57888888754 12345666666554333444444
Q ss_pred cchHH-HHHHHhhcCCCCCceeEEEEeCC
Q 029414 85 SEALS-VLDQLLKYSENEGSFDYAFVDAD 112 (194)
Q Consensus 85 ~d~~~-~~~~~~~~~~~~~~fD~i~id~~ 112 (194)
....+ ...++ -..+|+|+ |+.
T Consensus 104 ~~l~~~n~~~l------l~~~DlVv-D~~ 125 (287)
T PRK08223 104 EGIGKENADAF------LDGVDVYV-DGL 125 (287)
T ss_pred cccCccCHHHH------HhCCCEEE-ECC
Confidence 33221 22233 25799886 543
No 481
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=82.81 E-value=26 Score=29.02 Aligned_cols=124 Identities=14% Similarity=0.151 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHhHHHHHHHcCCCCcEEEEec-ch
Q 029414 10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRE-TYEIGLPIIKKAGVDHKINFIES-EA 87 (194)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~~~~~~v~~~~~-d~ 87 (194)
.++....+-..++.......++-..+|++.....+...+.++.+|+..+..-. ............+. .+.++.. |.
T Consensus 50 ~~pt~~~L~~~lA~l~g~~~~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi--~v~~vd~~d~ 127 (386)
T PRK08045 50 GNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCY--RVLFVDQGDE 127 (386)
T ss_pred CCccHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCe--EEEEeCCCCH
Confidence 34556667777777666666777777776665555444555778887765443 33333333322221 2344322 33
Q ss_pred HHHHHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccC-CeEEEEeccccc
Q 029414 88 LSVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKV-GGIAVYDNTLWG 141 (194)
Q Consensus 88 ~~~~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~~ 141 (194)
.++...+ .++-++|++..+ +......++.+.++.+. |..+++|++...
T Consensus 128 e~l~~~l------~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~ 178 (386)
T PRK08045 128 QALRAAL------AEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLS 178 (386)
T ss_pred HHHHHhc------ccCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCc
Confidence 3332222 235688887744 11111113344444433 566777776543
No 482
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=82.75 E-value=22 Score=28.31 Aligned_cols=98 Identities=16% Similarity=0.243 Sum_probs=57.3
Q ss_pred HcCCCeEEEEccc-ccHHHHHHHhhCCCCCE-EEEEeCCcchHHhHHHHHHHcCCCCcEEEEec---chHHHHHHHhhcC
Q 029414 24 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKYS 98 (194)
Q Consensus 24 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~~~~~~ 98 (194)
..++.+||-.|+| .|..++.+|+.. +.+ ++++..+++..+.+++ .+.. .++.. +..+.+....
T Consensus 163 ~~~g~~VlV~g~g~vg~~~~~la~~~--g~~~v~~~~~s~~~~~~~~~----~g~~---~~~~~~~~~~~~~i~~~~--- 230 (343)
T cd08235 163 IKPGDTVLVIGAGPIGLLHAMLAKAS--GARKVIVSDLNEFRLEFAKK----LGAD---YTIDAAEEDLVEKVRELT--- 230 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCCc---EEecCCccCHHHHHHHHh---
Confidence 3456788888764 556666677764 456 8888888777665532 3432 22221 2222222221
Q ss_pred CCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414 99 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 137 (194)
Q Consensus 99 ~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~ 137 (194)
....+|+++-.... ...+..+++.|+++|.++.-.
T Consensus 231 -~~~~vd~vld~~~~---~~~~~~~~~~l~~~g~~v~~~ 265 (343)
T cd08235 231 -DGRGADVVIVATGS---PEAQAQALELVRKGGRILFFG 265 (343)
T ss_pred -CCcCCCEEEECCCC---hHHHHHHHHHhhcCCEEEEEe
Confidence 12458987743221 245677789999999988743
No 483
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=82.50 E-value=22 Score=27.92 Aligned_cols=98 Identities=19% Similarity=0.139 Sum_probs=55.4
Q ss_pred HcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414 24 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 101 (194)
Q Consensus 24 ~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 101 (194)
..++.+||-.|+ +.|..+..+|+.. +.+++.+..+++..+.+++ .+...-+.....+..+.+.... ..
T Consensus 136 ~~~~~~vlI~g~~~~vg~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~----~~ 205 (323)
T cd05282 136 LPPGDWVIQNAANSAVGRMLIQLAKLL--GFKTINVVRRDEQVEELKA----LGADEVIDSSPEDLAQRVKEAT----GG 205 (323)
T ss_pred CCCCCEEEEcccccHHHHHHHHHHHHC--CCeEEEEecChHHHHHHHh----cCCCEEecccchhHHHHHHHHh----cC
Confidence 345678888876 4677778888875 5678888777766555532 3432111111112222222221 12
Q ss_pred CceeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414 102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 135 (194)
Q Consensus 102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~ 135 (194)
..+|+++ +..... ....+++.++++|.++.
T Consensus 206 ~~~d~vl-~~~g~~---~~~~~~~~l~~~g~~v~ 235 (323)
T cd05282 206 AGARLAL-DAVGGE---SATRLARSLRPGGTLVN 235 (323)
T ss_pred CCceEEE-ECCCCH---HHHHHHHhhCCCCEEEE
Confidence 4699887 433221 23456789999999885
No 484
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=82.46 E-value=21 Score=27.80 Aligned_cols=96 Identities=19% Similarity=0.220 Sum_probs=59.4
Q ss_pred HcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414 24 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 101 (194)
Q Consensus 24 ~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 101 (194)
..++.+||-.|+ +.|..+..+|+.. +.+++++..+++..+.++ ..+.. .+-....+..+.+..+ .
T Consensus 140 ~~~g~~vlV~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~----~~g~~-~~~~~~~~~~~~i~~~------~ 206 (320)
T cd08243 140 LQPGDTLLIRGGTSSVGLAALKLAKAL--GATVTATTRSPERAALLK----ELGAD-EVVIDDGAIAEQLRAA------P 206 (320)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH----hcCCc-EEEecCccHHHHHHHh------C
Confidence 446778888885 5677888888875 577888888876655543 23432 2211122222222222 2
Q ss_pred CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
..+|+++ +.... ..+..+++.++++|.++.-
T Consensus 207 ~~~d~vl-~~~~~---~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 207 GGFDKVL-ELVGT---ATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred CCceEEE-ECCCh---HHHHHHHHHhccCCEEEEE
Confidence 5699887 33221 3567788999999999864
No 485
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=82.45 E-value=23 Score=28.25 Aligned_cols=99 Identities=15% Similarity=0.167 Sum_probs=56.9
Q ss_pred HcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe-cchHHHHHHHhhcCCCC
Q 029414 24 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENE 101 (194)
Q Consensus 24 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~~~ 101 (194)
..+..+||-.|+| .|..+..+|+.. +.+++++..+++..+.+++ .+...-+.... .+..+.+..+. .
T Consensus 163 ~~~~~~vlV~g~g~vg~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~-----~ 231 (345)
T cd08260 163 VKPGEWVAVHGCGGVGLSAVMIASAL--GARVIAVDIDDDKLELARE----LGAVATVNASEVEDVAAAVRDLT-----G 231 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHH----hCCCEEEccccchhHHHHHHHHh-----C
Confidence 3456788888853 344556666664 5789999888877666643 34321112111 12222222221 2
Q ss_pred CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
+.+|+++-.... ...+..+++.|+++|.++.-
T Consensus 232 ~~~d~vi~~~g~---~~~~~~~~~~l~~~g~~i~~ 263 (345)
T cd08260 232 GGAHVSVDALGI---PETCRNSVASLRKRGRHVQV 263 (345)
T ss_pred CCCCEEEEcCCC---HHHHHHHHHHhhcCCEEEEe
Confidence 379988743211 34567788999999998863
No 486
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=82.44 E-value=20 Score=28.18 Aligned_cols=99 Identities=17% Similarity=0.126 Sum_probs=56.2
Q ss_pred HcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe-cchHHHHHHHhhcCCCC
Q 029414 24 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENE 101 (194)
Q Consensus 24 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~~~ 101 (194)
..++.+|+-.|+| .|..+..+|+.. +.+++.++.+++..+.+++ .+...-+.... .+..+.+.... ..
T Consensus 158 ~~~g~~vli~g~g~~g~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~----~~ 227 (336)
T cd08276 158 LKPGDTVLVQGTGGVSLFALQFAKAA--GARVIATSSSDEKLERAKA----LGADHVINYRTTPDWGEEVLKLT----GG 227 (336)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEcCCcccCHHHHHHHHc----CC
Confidence 3455666666553 445556666664 5789999888877666654 23321111111 22333333331 12
Q ss_pred CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
..+|+++- ... ...+..+++.++++|.++.-
T Consensus 228 ~~~d~~i~-~~~---~~~~~~~~~~l~~~G~~v~~ 258 (336)
T cd08276 228 RGVDHVVE-VGG---PGTLAQSIKAVAPGGVISLI 258 (336)
T ss_pred CCCcEEEE-CCC---hHHHHHHHHhhcCCCEEEEE
Confidence 46898874 321 23467788999999998863
No 487
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=82.30 E-value=19 Score=27.13 Aligned_cols=93 Identities=13% Similarity=0.038 Sum_probs=48.7
Q ss_pred CCCeEEEEcccc-cHH-HHHHHhhCCCCCEEEEEeCCc------------------chHHhHHHHHHHcCCCCcEEEEec
Q 029414 26 NAKKTIEIGVFT-GYS-LLLTALTIPEDGQITAIDVNR------------------ETYEIGLPIIKKAGVDHKINFIES 85 (194)
Q Consensus 26 ~~~~vLeiG~G~-G~~-~~~la~~~~~~~~v~~iD~~~------------------~~~~~a~~~~~~~~~~~~v~~~~~ 85 (194)
+..+|+-+|||. |.. +..++.. . -++++.+|.+. ...+.+++++.+.+..-+++.+..
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~-G-vg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~ 104 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARS-G-VGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNE 104 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHc-C-CCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEee
Confidence 567899999984 443 3334443 3 47899999873 123445556655443234444443
Q ss_pred chHH-HHHHHhhcCCCCCceeEEEEeCC-ccccHHHHHHHHhc
Q 029414 86 EALS-VLDQLLKYSENEGSFDYAFVDAD-KDNYCNYHERLMKL 126 (194)
Q Consensus 86 d~~~-~~~~~~~~~~~~~~fD~i~id~~-~~~~~~~~~~~~~~ 126 (194)
...+ ...++ ...||+|+...+ ........+.+.+.
T Consensus 105 ~i~~~~~~~~------~~~~DvVI~a~D~~~~r~~l~~~~~~~ 141 (212)
T PRK08644 105 KIDEDNIEEL------FKDCDIVVEAFDNAETKAMLVETVLEH 141 (212)
T ss_pred ecCHHHHHHH------HcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 3322 22233 257998875433 22223344445444
No 488
>PLN02702 L-idonate 5-dehydrogenase
Probab=82.18 E-value=23 Score=28.65 Aligned_cols=102 Identities=17% Similarity=0.203 Sum_probs=56.9
Q ss_pred cCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEE--ecchHHHHHHHhhcCCCC
Q 029414 25 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI--ESEALSVLDQLLKYSENE 101 (194)
Q Consensus 25 ~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~--~~d~~~~~~~~~~~~~~~ 101 (194)
.++.+||-.|+| .|..+..+|+... -..+++++.+++..+.+++ .+.+..+.+. ..+..+.+..+... ..
T Consensus 180 ~~g~~vlI~g~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~--~~ 252 (364)
T PLN02702 180 GPETNVLVMGAGPIGLVTMLAARAFG-APRIVIVDVDDERLSVAKQ----LGADEIVLVSTNIEDVESEVEEIQKA--MG 252 (364)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----hCCCEEEecCcccccHHHHHHHHhhh--cC
Confidence 356788888764 3556667777653 3458888887766655443 3433222211 12332322222100 02
Q ss_pred CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
+.+|+++-.... ...+..+++.|+++|.++.-
T Consensus 253 ~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~ 284 (364)
T PLN02702 253 GGIDVSFDCVGF---NKTMSTALEATRAGGKVCLV 284 (364)
T ss_pred CCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEE
Confidence 468977643221 24578888999999998864
No 489
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=82.12 E-value=4.7 Score=33.35 Aligned_cols=50 Identities=16% Similarity=0.086 Sum_probs=34.3
Q ss_pred HHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHH
Q 029414 16 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGL 68 (194)
Q Consensus 16 ~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~ 68 (194)
......+...+.++||-|.+|.....-+ +... ..+|++||.||......+
T Consensus 25 ~vD~~aL~i~~~d~vl~ItSaG~N~L~y-L~~~--P~~I~aVDlNp~Q~aLle 74 (380)
T PF11899_consen 25 RVDMEALNIGPDDRVLTITSAGCNALDY-LLAG--PKRIHAVDLNPAQNALLE 74 (380)
T ss_pred HHHHHHhCCCCCCeEEEEccCCchHHHH-HhcC--CceEEEEeCCHHHHHHHH
Confidence 3445566677888999999865554444 4432 479999999997665443
No 490
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=82.10 E-value=27 Score=28.79 Aligned_cols=122 Identities=13% Similarity=0.109 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCC-cchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414 10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVN-RETYEIGLPIIKKAGVDHKINFIESEAL 88 (194)
Q Consensus 10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 88 (194)
.+|....+-..++........+-+++|+......++ .+.++.+|+..+.. +.........+...+. .+.++..+..
T Consensus 48 ~~p~~~~Le~~la~l~g~~~al~~~SG~~Al~~~l~-~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi--~v~~vd~~d~ 124 (380)
T PRK06176 48 GNPTRFALEELIADLEGGVKGFAFASGLAGIHAVFS-LFQSGDHVLLGDDVYGGTFRLFDKVLVKNGL--SCTIIDTSDL 124 (380)
T ss_pred CChhHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHH-HcCCCCEEEEcCCChhHHHHHHHHHHHhcCe--EEEEcCCCCH
Confidence 345566666666666666667888888876655454 44557788887642 2233333444444543 2333333222
Q ss_pred HHHHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccC-CeEEEEeccc
Q 029414 89 SVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKV-GGIAVYDNTL 139 (194)
Q Consensus 89 ~~~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~ 139 (194)
+.+.... .+...+|++..+ +......++.+.++.+. |..+++|++.
T Consensus 125 e~l~~ai-----~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~ 173 (380)
T PRK06176 125 SQIKKAI-----KPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTF 173 (380)
T ss_pred HHHHHhc-----CcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCc
Confidence 3333321 245678887533 11111224445555554 4555566554
No 491
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=81.98 E-value=9.3 Score=30.91 Aligned_cols=100 Identities=20% Similarity=0.168 Sum_probs=59.8
Q ss_pred CCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414 26 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 26 ~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f 104 (194)
+++++--+|.| .|..+..+|+++ +.+|+++|.+...-+.+ +...|-+.-+... .|. +....+ .+..
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAM--G~rV~vis~~~~kkeea---~~~LGAd~fv~~~-~d~-d~~~~~------~~~~ 247 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAM--GMRVTVISTSSKKKEEA---IKSLGADVFVDST-EDP-DIMKAI------MKTT 247 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHh--CcEEEEEeCCchhHHHH---HHhcCcceeEEec-CCH-HHHHHH------HHhh
Confidence 56677777754 688999999987 58999999987544433 4444644222222 122 333333 1345
Q ss_pred eEEEEeCCccccHHHHHHHHhcccCCeEEEEeccc
Q 029414 105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 139 (194)
Q Consensus 105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 139 (194)
|.+.-... .-....++.+..+||++|.+|+-...
T Consensus 248 dg~~~~v~-~~a~~~~~~~~~~lk~~Gt~V~vg~p 281 (360)
T KOG0023|consen 248 DGGIDTVS-NLAEHALEPLLGLLKVNGTLVLVGLP 281 (360)
T ss_pred cCcceeee-eccccchHHHHHHhhcCCEEEEEeCc
Confidence 54432211 01234467788999999999985443
No 492
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=81.98 E-value=24 Score=28.05 Aligned_cols=99 Identities=17% Similarity=0.151 Sum_probs=54.6
Q ss_pred cCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414 25 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 103 (194)
Q Consensus 25 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 103 (194)
.++.+||-.|+|. |..+..+|+... ..++++++.+++..+.++ ..+.. .+--...+..+.+..+. ....
T Consensus 166 ~~~~~vlI~g~~~vg~~~~~~a~~~g-~~~v~~~~~~~~~~~~~~----~~g~~-~~~~~~~~~~~~i~~~~----~~~~ 235 (340)
T cd05284 166 DPGSTVVVIGVGGLGHIAVQILRALT-PATVIAVDRSEEALKLAE----RLGAD-HVLNASDDVVEEVRELT----GGRG 235 (340)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHhC-CCcEEEEeCCHHHHHHHH----HhCCc-EEEcCCccHHHHHHHHh----CCCC
Confidence 4567888888543 334444565542 268888888877665553 33432 11111111222222221 1246
Q ss_pred eeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
+|+++-.... ...++.+++.|+++|.++.-
T Consensus 236 ~dvvld~~g~---~~~~~~~~~~l~~~g~~i~~ 265 (340)
T cd05284 236 ADAVIDFVGS---DETLALAAKLLAKGGRYVIV 265 (340)
T ss_pred CCEEEEcCCC---HHHHHHHHHHhhcCCEEEEE
Confidence 9988743221 24567788999999999863
No 493
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=81.96 E-value=17 Score=29.25 Aligned_cols=100 Identities=16% Similarity=0.126 Sum_probs=54.2
Q ss_pred cCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414 25 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS 103 (194)
Q Consensus 25 ~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 103 (194)
.++.+||-.|+| .|..+..+|+... ...+++++.+++....++ ..+...-+.....+..+.+..+. ....
T Consensus 173 ~~g~~vlI~g~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~----~~g~~~v~~~~~~~~~~~~~~~~----~~~~ 243 (350)
T cd08256 173 KFDDVVVLAGAGPLGLGMIGAARLKN-PKKLIVLDLKDERLALAR----KFGADVVLNPPEVDVVEKIKELT----GGYG 243 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEcCCHHHHHHHH----HcCCcEEecCCCcCHHHHHHHHh----CCCC
Confidence 345666665553 3456666777754 346788888776554433 33432111111122323333321 1235
Q ss_pred eeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414 104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136 (194)
Q Consensus 104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 136 (194)
+|+++ |.... ...+..+++.++++|.++.-
T Consensus 244 vdvvl-d~~g~--~~~~~~~~~~l~~~G~~v~~ 273 (350)
T cd08256 244 CDIYI-EATGH--PSAVEQGLNMIRKLGRFVEF 273 (350)
T ss_pred CCEEE-ECCCC--hHHHHHHHHHhhcCCEEEEE
Confidence 89776 43221 23467788999999998864
No 494
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=81.74 E-value=3.4 Score=30.80 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=27.1
Q ss_pred HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchH
Q 029414 24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETY 64 (194)
Q Consensus 24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~ 64 (194)
...++++|-+|++. |..+..+.. +..+|+.+|++|.+.
T Consensus 42 ~~E~~~vli~G~YltG~~~a~~Ls---~~~~vtv~Di~p~~r 80 (254)
T COG4017 42 GEEFKEVLIFGVYLTGNYTAQMLS---KADKVTVVDIHPFMR 80 (254)
T ss_pred ccCcceEEEEEeeehhHHHHHHhc---ccceEEEecCCHHHH
Confidence 34578999999984 545444443 478999999998543
No 495
>PRK07063 short chain dehydrogenase; Provisional
Probab=81.70 E-value=21 Score=27.20 Aligned_cols=85 Identities=14% Similarity=0.150 Sum_probs=48.8
Q ss_pred CCCeEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcC-CCC
Q 029414 26 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-ENE 101 (194)
Q Consensus 26 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~-~~~ 101 (194)
+++++|-.|+..| .+..+++.+ ..+.+|+.++.+++..+...+.+.......++.++..|..+. ...+..+. ...
T Consensus 6 ~~k~vlVtGas~g-IG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 6 AGKVALVTGAAQG-IGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 4678898887543 334333333 136789999998887777766665432234677777775321 11111100 013
Q ss_pred CceeEEEEeC
Q 029414 102 GSFDYAFVDA 111 (194)
Q Consensus 102 ~~fD~i~id~ 111 (194)
+.+|.++...
T Consensus 85 g~id~li~~a 94 (260)
T PRK07063 85 GPLDVLVNNA 94 (260)
T ss_pred CCCcEEEECC
Confidence 5789887654
No 496
>PRK08507 prephenate dehydrogenase; Validated
Probab=81.65 E-value=4.5 Score=31.66 Aligned_cols=84 Identities=19% Similarity=0.189 Sum_probs=47.7
Q ss_pred eEEEEcccccHHHHHHHhhCCCC---CEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414 29 KTIEIGVFTGYSLLLTALTIPED---GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 105 (194)
Q Consensus 29 ~vLeiG~G~G~~~~~la~~~~~~---~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD 105 (194)
+|.=||+| ..+..++..+... .+|+++|.+++..+.+++ .+.... . .+. ... ...|
T Consensus 2 ~I~iIG~G--~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~----~g~~~~---~-~~~----~~~-------~~aD 60 (275)
T PRK08507 2 KIGIIGLG--LMGGSLGLALKEKGLISKVYGYDHNELHLKKALE----LGLVDE---I-VSF----EEL-------KKCD 60 (275)
T ss_pred EEEEEccC--HHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH----CCCCcc---c-CCH----HHH-------hcCC
Confidence 46667764 4444444433212 378999998877665432 332111 1 121 112 1279
Q ss_pred EEEEeCCccccHHHHHHHHhcccCCeEEE
Q 029414 106 YAFVDADKDNYCNYHERLMKLLKVGGIAV 134 (194)
Q Consensus 106 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv 134 (194)
+|++..+.......++.+.+ ++++.+++
T Consensus 61 ~Vilavp~~~~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 61 VIFLAIPVDAIIEILPKLLD-IKENTTII 88 (275)
T ss_pred EEEEeCcHHHHHHHHHHHhc-cCCCCEEE
Confidence 99988776666777777777 77766444
No 497
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=81.62 E-value=10 Score=27.64 Aligned_cols=88 Identities=13% Similarity=0.048 Sum_probs=48.6
Q ss_pred CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414 26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 104 (194)
Q Consensus 26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f 104 (194)
.+++|.-+|+|. |......++.+ +.+|+++|.++.... .+... .+ ...+..+.+. ..
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~~~----~~~~~----~~--~~~~l~ell~----------~a 92 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAF--GMRVIGYDRSPKPEE----GADEF----GV--EYVSLDELLA----------QA 92 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHT--T-EEEEEESSCHHHH----HHHHT----TE--EESSHHHHHH----------H-
T ss_pred CCCEEEEEEEcCCcCeEeeeeecC--CceeEEecccCChhh----hcccc----cc--eeeehhhhcc----------hh
Confidence 578999999864 44444455554 579999999886444 11111 22 2224444433 36
Q ss_pred eEEEEeCCc-cccHHH-HHHHHhcccCCeEEEE
Q 029414 105 DYAFVDADK-DNYCNY-HERLMKLLKVGGIAVY 135 (194)
Q Consensus 105 D~i~id~~~-~~~~~~-~~~~~~~L~~gG~lv~ 135 (194)
|+|++..+. +....+ =+..+..+|+|.+||=
T Consensus 93 Div~~~~plt~~T~~li~~~~l~~mk~ga~lvN 125 (178)
T PF02826_consen 93 DIVSLHLPLTPETRGLINAEFLAKMKPGAVLVN 125 (178)
T ss_dssp SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEE
T ss_pred hhhhhhhccccccceeeeeeeeeccccceEEEe
Confidence 888887652 222122 2445688888776553
No 498
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=81.58 E-value=15 Score=25.46 Aligned_cols=78 Identities=17% Similarity=0.214 Sum_probs=39.8
Q ss_pred eEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------chHHhHHHHHHHcCCCCcEEEEecchH
Q 029414 29 KTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIESEAL 88 (194)
Q Consensus 29 ~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~d~~ 88 (194)
+|+-+||| .|...+......+ -++++.+|.+. ...+.+++++.+....-+++.+.....
T Consensus 1 ~VliiG~GglGs~ia~~L~~~G-v~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSG-VGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence 47888986 3443333222222 46899998762 123345556655442223444443332
Q ss_pred HH-HHHHhhcCCCCCceeEEEEeCCc
Q 029414 89 SV-LDQLLKYSENEGSFDYAFVDADK 113 (194)
Q Consensus 89 ~~-~~~~~~~~~~~~~fD~i~id~~~ 113 (194)
+. ...+ ...+|+|+...+.
T Consensus 80 ~~~~~~~------~~~~diVi~~~d~ 99 (143)
T cd01483 80 EDNLDDF------LDGVDLVIDAIDN 99 (143)
T ss_pred hhhHHHH------hcCCCEEEECCCC
Confidence 21 1222 2679988876553
No 499
>PRK06153 hypothetical protein; Provisional
Probab=81.58 E-value=30 Score=28.85 Aligned_cols=97 Identities=18% Similarity=0.111 Sum_probs=52.0
Q ss_pred HHcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc----------------------chHHhHHHHHHHcCCCCc
Q 029414 23 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNR----------------------ETYEIGLPIIKKAGVDHK 79 (194)
Q Consensus 23 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~----------------------~~~~~a~~~~~~~~~~~~ 79 (194)
...+..+|+-+|||. |...+......+ -++++.+|.+. .-.+.+++++.+.+ ..
T Consensus 172 ~kL~~~~VaIVG~GG~GS~Va~~LAR~G-VgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in--~~ 248 (393)
T PRK06153 172 AKLEGQRIAIIGLGGTGSYILDLVAKTP-VREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMR--RG 248 (393)
T ss_pred HHHhhCcEEEEcCCccHHHHHHHHHHcC-CCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhC--Ce
Confidence 344568899999985 544444444444 68999999752 11223455555443 24
Q ss_pred EEEEecchHH-HHHHHhhcCCCCCceeEEEEeCCccccHH-HHHHHHhcccC
Q 029414 80 INFIESEALS-VLDQLLKYSENEGSFDYAFVDADKDNYCN-YHERLMKLLKV 129 (194)
Q Consensus 80 v~~~~~d~~~-~~~~~~~~~~~~~~fD~i~id~~~~~~~~-~~~~~~~~L~~ 129 (194)
+..+.....+ ....+ ..+|+||...+...... ..+.+.+...|
T Consensus 249 I~~~~~~I~~~n~~~L-------~~~DiV~dcvDn~~aR~~ln~~a~~~gIP 293 (393)
T PRK06153 249 IVPHPEYIDEDNVDEL-------DGFTFVFVCVDKGSSRKLIVDYLEALGIP 293 (393)
T ss_pred EEEEeecCCHHHHHHh-------cCCCEEEEcCCCHHHHHHHHHHHHHcCCC
Confidence 5444333221 22222 57999987665333333 33445554444
No 500
>PRK07411 hypothetical protein; Validated
Probab=81.48 E-value=23 Score=29.47 Aligned_cols=96 Identities=19% Similarity=0.118 Sum_probs=51.1
Q ss_pred CCCeEEEEcccc-cHH-HHHHHhhCCCCCEEEEEeCCcc-------------------hHHhHHHHHHHcCCCCcEEEEe
Q 029414 26 NAKKTIEIGVFT-GYS-LLLTALTIPEDGQITAIDVNRE-------------------TYEIGLPIIKKAGVDHKINFIE 84 (194)
Q Consensus 26 ~~~~vLeiG~G~-G~~-~~~la~~~~~~~~v~~iD~~~~-------------------~~~~a~~~~~~~~~~~~v~~~~ 84 (194)
+..+||-+|||. |.. +..|+.. + -++++.+|.+.- ..+.+++++.+.+..-+++.+.
T Consensus 37 ~~~~VlivG~GGlG~~va~~La~~-G-vg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~ 114 (390)
T PRK07411 37 KAASVLCIGTGGLGSPLLLYLAAA-G-IGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYE 114 (390)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHc-C-CCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEe
Confidence 457899999984 433 3334433 2 578888887541 2345666666554333455555
Q ss_pred cchHH-HHHHHhhcCCCCCceeEEEEeCCccccHHHH-HHHHhcccC
Q 029414 85 SEALS-VLDQLLKYSENEGSFDYAFVDADKDNYCNYH-ERLMKLLKV 129 (194)
Q Consensus 85 ~d~~~-~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~-~~~~~~L~~ 129 (194)
..... ....+ -..||+|+...+.......+ +.|...-+|
T Consensus 115 ~~~~~~~~~~~------~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p 155 (390)
T PRK07411 115 TRLSSENALDI------LAPYDVVVDGTDNFPTRYLVNDACVLLNKP 155 (390)
T ss_pred cccCHHhHHHH------HhCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 44332 22233 25799887654433333333 334444444
Done!