BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029415
(194 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P30707|RL9_PEA 60S ribosomal protein L9 OS=Pisum sativum GN=RPL9 PE=2 SV=1
Length = 193
Score = 332 bits (851), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 160/194 (82%), Positives = 181/194 (93%), Gaps = 1/194 (0%)
Query: 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKI 60
MKTILSSETM IP+GV +K+NAK+IEVEGPRGKL R+FKHLNLDF L+TD E GK+KLKI
Sbjct: 1 MKTILSSETMNIPDGVTIKVNAKVIEVEGPRGKLVRDFKHLNLDFDLITD-ENGKKKLKI 59
Query: 61 DAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNF 120
DAWFGSRKTSAAIRTALSHV+NLITGVTKG+RYKMRFVYA FPINASI N +KSIEIRNF
Sbjct: 60 DAWFGSRKTSAAIRTALSHVENLITGVTKGFRYKMRFVYADFPINASITNDNKSIEIRNF 119
Query: 121 LGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEKKVR+V++LDGV+++RS+KVKDE++LDGNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 120 LGEKKVRKVDLLDGVSIIRSEKVKDEVVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 179
Query: 181 GIYVSEKGTIVGED 194
GIYVSEKG +V E+
Sbjct: 180 GIYVSEKGAVVVEE 193
>sp|P49210|RL9_ORYSJ 60S ribosomal protein L9 OS=Oryza sativa subsp. japonica GN=RPL9
PE=2 SV=3
Length = 190
Score = 330 bits (845), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 155/190 (81%), Positives = 177/190 (93%), Gaps = 4/190 (2%)
Query: 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKI 60
MKTIL+SETMEIPEGV V++ AK++ VEGPRGKL+RNFKHLNLDF L+ G RKL++
Sbjct: 1 MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGG----RKLQV 56
Query: 61 DAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNF 120
DAWFG+R+T AAIRTA+SHVQNLITGVTKGYRYKMRFVYAHFPINASI N++ +IEIRNF
Sbjct: 57 DAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNF 116
Query: 121 LGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEKKVR+V+ML+GVT+LRS+KVKDEL+LDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 117 LGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 176
Query: 181 GIYVSEKGTI 190
GIYVS+KGTI
Sbjct: 177 GIYVSDKGTI 186
>sp|P49209|RL91_ARATH 60S ribosomal protein L9-1 OS=Arabidopsis thaliana GN=RPL9B PE=2
SV=3
Length = 194
Score = 327 bits (839), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 156/194 (80%), Positives = 178/194 (91%)
Query: 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKI 60
MKTILSSETM+IP+ V +K++AK+IEVEGPRGKL R+FKHLNLDF L+ D ETGK+KLKI
Sbjct: 1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60
Query: 61 DAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNF 120
D+WFG+RKTSA+IRTALSHV NLI+GVT+G+RYKMRFVYAHFPINASI KSIEIRNF
Sbjct: 61 DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120
Query: 121 LGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEKKVR+VEMLDGVT++RS+KVKDE++LDGNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180
Query: 181 GIYVSEKGTIVGED 194
GIYVSEK IV E+
Sbjct: 181 GIYVSEKSKIVEEE 194
>sp|Q9SZX9|RL92_ARATH 60S ribosomal protein L9-2 OS=Arabidopsis thaliana GN=RPL9D PE=2
SV=1
Length = 194
Score = 325 bits (833), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 155/194 (79%), Positives = 177/194 (91%)
Query: 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKI 60
MKTILSSETM+IP+GV +K+NAK+IEVEGPRGKL+R+FKHLNLDF L+ D TGKR+LKI
Sbjct: 1 MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60
Query: 61 DAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNF 120
D+WFGSRKTSA+IRTALSHV NLI GVT+G+ Y+MRFVYAHFPINASI +KSIEIRNF
Sbjct: 61 DSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNF 120
Query: 121 LGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEKKVR+VEMLDGV ++RS+KVKDE+IL+GNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLD 180
Query: 181 GIYVSEKGTIVGED 194
GIYVSEKG I E+
Sbjct: 181 GIYVSEKGKIAVEE 194
>sp|Q90YW0|RL9_ICTPU 60S ribosomal protein L9 OS=Ictalurus punctatus GN=rpl9 PE=2 SV=1
Length = 192
Score = 230 bits (586), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 113/191 (59%), Positives = 139/191 (72%), Gaps = 3/191 (1%)
Query: 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKI 60
MKTILS++T++IP+ V V + + + V+GPRG L R F H+NL+ L+ + +KL++
Sbjct: 1 MKTILSTQTVDIPDNVDVTLKGRTVSVKGPRGVLRREFNHINLELRLLGKKQ---KKLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNF 120
D W+G+RK A +RT SHVQN+I GVT G+RYKMR VYAHFPIN I +EIRNF
Sbjct: 58 DKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQETGSLVEIRNF 117
Query: 121 LGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEK +RRV M GV S KDEL+L+GNDIELVS SAALI Q VKNKDIRKFLD
Sbjct: 118 LGEKYIRRVRMRPGVNCALSAAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLD 177
Query: 181 GIYVSEKGTIV 191
GIYVSEKGT+V
Sbjct: 178 GIYVSEKGTVV 188
>sp|P51410|RL9_MOUSE 60S ribosomal protein L9 OS=Mus musculus GN=Rpl9 PE=2 SV=2
Length = 192
Score = 228 bits (582), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 113/194 (58%), Positives = 141/194 (72%), Gaps = 3/194 (1%)
Query: 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKI 60
MKTILS++T++IPE V++ + + + V+GPRG L R+F H+N++ L+ K++L++
Sbjct: 1 MKTILSNQTVDIPENVEITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNF 120
D W+G+RK A +RT SHVQN+I GVT G+RYKMR VYAHFPIN I +EIRNF
Sbjct: 58 DKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNF 117
Query: 121 LGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEK +RRV M GV S KDELIL+GNDIELVS SAALI Q VKNKDIRKFLD
Sbjct: 118 LGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLD 177
Query: 181 GIYVSEKGTIVGED 194
GIYVSEKGT+ D
Sbjct: 178 GIYVSEKGTVQQAD 191
>sp|Q5IFJ7|RL9_MACFA 60S ribosomal protein L9 OS=Macaca fascicularis GN=RPL9 PE=2 SV=1
Length = 192
Score = 228 bits (581), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 114/194 (58%), Positives = 140/194 (72%), Gaps = 3/194 (1%)
Query: 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKI 60
MKTILS++T++IPE V + + + + V+GPRG L R+F H+N++ L+ K++L++
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNF 120
D W+G+RK A IRT SHVQN+I GVT G+RYKMR VYAHFPIN I +EIRNF
Sbjct: 58 DKWWGNRKELATIRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNF 117
Query: 121 LGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEK +RRV M GV S KDELIL+GNDIELVS SAALI Q VKNKDIRKFLD
Sbjct: 118 LGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLD 177
Query: 181 GIYVSEKGTIVGED 194
GIYVSEKGT+ D
Sbjct: 178 GIYVSEKGTVQQAD 191
>sp|P17077|RL9_RAT 60S ribosomal protein L9 OS=Rattus norvegicus GN=Rpl9 PE=1 SV=1
Length = 192
Score = 228 bits (580), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 113/194 (58%), Positives = 140/194 (72%), Gaps = 3/194 (1%)
Query: 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKI 60
MKTILS++T++IPE V + + + + V+GPRG L R+F H+N++ L+ K++L++
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNF 120
D W+G+RK A +RT SHVQN+I GVT G+RYKMR VYAHFPIN I +EIRNF
Sbjct: 58 DKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNF 117
Query: 121 LGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEK +RRV M GV S KDELIL+GNDIELVS SAALI Q VKNKDIRKFLD
Sbjct: 118 LGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLD 177
Query: 181 GIYVSEKGTIVGED 194
GIYVSEKGT+ D
Sbjct: 178 GIYVSEKGTVQQPD 191
>sp|P32969|RL9_HUMAN 60S ribosomal protein L9 OS=Homo sapiens GN=RPL9 PE=1 SV=1
Length = 192
Score = 227 bits (579), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 113/194 (58%), Positives = 140/194 (72%), Gaps = 3/194 (1%)
Query: 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKI 60
MKTILS++T++IPE V + + + + V+GPRG L R+F H+N++ L+ K++L++
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNF 120
D W+G+RK A +RT SHVQN+I GVT G+RYKMR VYAHFPIN I +EIRNF
Sbjct: 58 DKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNF 117
Query: 121 LGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEK +RRV M GV S KDELIL+GNDIELVS SAALI Q VKNKDIRKFLD
Sbjct: 118 LGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLD 177
Query: 181 GIYVSEKGTIVGED 194
GIYVSEKGT+ D
Sbjct: 178 GIYVSEKGTVQQAD 191
>sp|Q3SYR7|RL9_BOVIN 60S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=2 SV=1
Length = 192
Score = 227 bits (579), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 113/194 (58%), Positives = 140/194 (72%), Gaps = 3/194 (1%)
Query: 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKI 60
MKTILS++T++IPE V + + + + V+GPRG L R+F H+N++ L+ K++L++
Sbjct: 1 MKTILSNQTVDIPENVDINLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNF 120
D W+G+RK A +RT SHVQN+I GVT G+RYKMR VYAHFPIN I +EIRNF
Sbjct: 58 DKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNF 117
Query: 121 LGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEK +RRV M GV S KDELIL+GNDIELVS SAALI Q VKNKDIRKFLD
Sbjct: 118 LGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLD 177
Query: 181 GIYVSEKGTIVGED 194
GIYVSEKGT+ D
Sbjct: 178 GIYVSEKGTVQQAD 191
>sp|Q963B7|RL9_SPOFR 60S ribosomal protein L9 OS=Spodoptera frugiperda GN=RpL9 PE=2 SV=1
Length = 190
Score = 227 bits (578), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 109/190 (57%), Positives = 142/190 (74%), Gaps = 5/190 (2%)
Query: 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKI 60
MK I++++ ++IPEG+ V + ++++ V+GPRG L RNFKHL +D ++ R LK+
Sbjct: 1 MKQIVANQKVKIPEGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RVLKV 55
Query: 61 DAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNF 120
+ WFGS+K AA+RT SHV+N+I GVTKG++YKMR VYAHFPIN + IEIRNF
Sbjct: 56 EKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRSVYAHFPINCVTTEGNSVIEIRNF 115
Query: 121 LGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEK +RRV+M GVTV+ S K KDELI++GN +E VS SAALI Q VKNKDIRKFLD
Sbjct: 116 LGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLD 175
Query: 181 GIYVSEKGTI 190
G+YVSEK T+
Sbjct: 176 GLYVSEKTTV 185
>sp|Q5R9Q7|RL9_PONAB 60S ribosomal protein L9 OS=Pongo abelii GN=RPL9 PE=2 SV=1
Length = 192
Score = 226 bits (577), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 113/194 (58%), Positives = 139/194 (71%), Gaps = 3/194 (1%)
Query: 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKI 60
MKTILS++T++IPE V + + + + V+GPRG L R+F H+N++ L+ K++L++
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRV 57
Query: 61 DAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNF 120
D W+G+RK A +RT SHVQN+I GVT G+RYKMR VYAHFPIN I +EIRNF
Sbjct: 58 DEWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNF 117
Query: 121 LGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEK +RRV M GV S KDELIL GNDIELVS SAALI Q VKNKDIRKFLD
Sbjct: 118 LGEKYIRRVRMRPGVACSVSQAQKDELILGGNDIELVSNSAALIQQATTVKNKDIRKFLD 177
Query: 181 GIYVSEKGTIVGED 194
GIYVSEKGT+ D
Sbjct: 178 GIYVSEKGTVQQAD 191
>sp|P50882|RL9_DROME 60S ribosomal protein L9 OS=Drosophila melanogaster GN=RpL9 PE=1
SV=2
Length = 190
Score = 224 bits (570), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 110/191 (57%), Positives = 142/191 (74%), Gaps = 5/191 (2%)
Query: 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKI 60
M+TI S++ ++IP+ +K + A+++ + G RG L R+FKHL LD + M D KR LK+
Sbjct: 1 MRTINSNQCVKIPKDIKASVKARVVTITGTRGTLKRSFKHLALDMY-MPD----KRTLKV 55
Query: 61 DAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNF 120
+ WFG++K AA+RT SH++N+I GVT G++YKMR VYAHFPIN + + IEIRNF
Sbjct: 56 EKWFGTKKELAAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTVIEIRNF 115
Query: 121 LGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEK +RRVEM GVTV+ S KDELI++GNDIE VS SAALI Q VKNKDIRKFLD
Sbjct: 116 LGEKYIRRVEMAPGVTVVNSTAQKDELIVEGNDIESVSGSAALIQQSTTVKNKDIRKFLD 175
Query: 181 GIYVSEKGTIV 191
G+YVSEK T+V
Sbjct: 176 GLYVSEKTTVV 186
>sp|Q54XI5|RL9_DICDI 60S ribosomal protein L9 OS=Dictyostelium discoideum GN=rpl9 PE=1
SV=2
Length = 188
Score = 217 bits (552), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 100/190 (52%), Positives = 140/190 (73%), Gaps = 5/190 (2%)
Query: 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKI 60
MK I SS ++IPE V V + + ++V GPRG LS++F H ++D +L+ GK++L +
Sbjct: 1 MKVINSSRKVQIPENVTVDVKGRSVKVTGPRGTLSKSFDHASVDINLV-----GKKELTV 55
Query: 61 DAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNF 120
D WFG+RK A I+T S ++N+ITGVTKGY YKMRFVYAHFPIN ++ + + +EIRNF
Sbjct: 56 DLWFGNRKQIACIKTITSIIENMITGVTKGYEYKMRFVYAHFPINVAVTDGGRVVEIRNF 115
Query: 121 LGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
GEK VRR+E+LDG+T R++K KDE++L GN +EL+S+S A I + +K KD+RKFLD
Sbjct: 116 FGEKIVRRIELLDGITCYRNEKAKDEIVLTGNSLELLSQSCATIQLRSAIKYKDVRKFLD 175
Query: 181 GIYVSEKGTI 190
GIYVSE+ +
Sbjct: 176 GIYVSERNVL 185
>sp|Q95Y90|RL9_CAEEL 60S ribosomal protein L9 OS=Caenorhabditis elegans GN=rpl-9 PE=1
SV=1
Length = 189
Score = 211 bits (536), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 101/194 (52%), Positives = 138/194 (71%), Gaps = 5/194 (2%)
Query: 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKI 60
MK I S++T+ PEGV + +I+ V GPRG + ++F+HL+++ + GK L++
Sbjct: 1 MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERI-----GKSTLRV 55
Query: 61 DAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNF 120
WFG RK AAIRT SH++N+I GVT G+RYKMR VYAHFPIN ++ + ++++EIRNF
Sbjct: 56 RKWFGVRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNF 115
Query: 121 LGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEK VRRV + +GV S KDE++++GND++ VS++AA I Q VK KDIRKFLD
Sbjct: 116 LGEKIVRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAVKEKDIRKFLD 175
Query: 181 GIYVSEKGTIVGED 194
GIYVSEK TIV D
Sbjct: 176 GIYVSEKTTIVPTD 189
>sp|P51401|RL9B_YEAST 60S ribosomal protein L9-B OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL9B PE=1 SV=1
Length = 191
Score = 205 bits (521), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 105/193 (54%), Positives = 138/193 (71%), Gaps = 7/193 (3%)
Query: 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKI 60
MK I + + +EIPEGV V I ++I++V GPRG L++N KH+++ F + + +K+
Sbjct: 1 MKYIQTEQQIEIPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTF-----TKVNNQLIKV 55
Query: 61 DAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANAD--KSIEIR 118
G RK AA+RT S V N+ITGVTKGY+YKMR+VYAHFPIN +I D K IE+R
Sbjct: 56 AVHNGDRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVR 115
Query: 119 NFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKF 178
NFLG+KK+R V + DGVT+ S VKDE++L GN +E VS++AA + Q C V+NKDIRKF
Sbjct: 116 NFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKF 175
Query: 179 LDGIYVSEKGTIV 191
LDGIYVS KG IV
Sbjct: 176 LDGIYVSHKGFIV 188
>sp|P05738|RL9A_YEAST 60S ribosomal protein L9-A OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL9A PE=1 SV=2
Length = 191
Score = 202 bits (515), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 103/192 (53%), Positives = 137/192 (71%), Gaps = 7/192 (3%)
Query: 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKI 60
MK I + + +E+PEGV V I ++I++V GPRG L++N KH+++ F + + +K+
Sbjct: 1 MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTF-----TKVNNQLIKV 55
Query: 61 DAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANAD--KSIEIR 118
G RK AA+RT S V N+ITGVTKGY+YKMR+VYAHFPIN +I D K IE+R
Sbjct: 56 AVHNGGRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVR 115
Query: 119 NFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKF 178
NFLG+KK+R V + DGVT+ S VKDE++L GN +E VS++AA + Q C V+NKDIRKF
Sbjct: 116 NFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKF 175
Query: 179 LDGIYVSEKGTI 190
LDGIYVS KG I
Sbjct: 176 LDGIYVSHKGFI 187
>sp|O74905|RL9B_SCHPO 60S ribosomal protein L9-B OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl9b PE=3 SV=1
Length = 189
Score = 199 bits (506), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 102/189 (53%), Positives = 131/189 (69%), Gaps = 6/189 (3%)
Query: 2 KTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKID 61
+ I ET+ IPEGV V I A+++ V+GPRG L +N + + D L G T +K
Sbjct: 3 RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRV--DIELKKQGNT----IKFI 56
Query: 62 AWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFL 121
W GSRK +A IRTA S + N+I GVT+G+RYKMR VYAHFPIN ++ +EIRNFL
Sbjct: 57 VWHGSRKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFL 116
Query: 122 GEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDG 181
GE+ R ++ L GVTV S VKDE+I++GN +E VS+SAA I Q C+V+NKDIRKFLDG
Sbjct: 117 GERITRVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDG 176
Query: 182 IYVSEKGTI 190
IYVSE+G I
Sbjct: 177 IYVSERGNI 185
>sp|Q10232|RL9A_SCHPO 60S ribosomal protein L9-A OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl9a PE=3 SV=1
Length = 190
Score = 196 bits (497), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 100/189 (52%), Positives = 129/189 (68%), Gaps = 6/189 (3%)
Query: 2 KTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKID 61
+ I ET+ IP+GV V I A+ + V GPRG L +N +H+ D + G T +K
Sbjct: 3 RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHV--DIEMKKQGNT----IKFI 56
Query: 62 AWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFL 121
W GSRK +A IR+ S + N+I GVT+G+RYKMR VYAHFPIN ++ +EIRNFL
Sbjct: 57 VWHGSRKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFL 116
Query: 122 GEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDG 181
GE+ R ++ L GVTV S VKDE+IL+GN +E VS+SAA I Q C+V+NKDIRKFLDG
Sbjct: 117 GERITRVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDG 176
Query: 182 IYVSEKGTI 190
IYVSE+G I
Sbjct: 177 IYVSERGNI 185
>sp|Q22AX5|RL9_TETTS 60S ribosomal protein L9 OS=Tetrahymena thermophila (strain SB210)
GN=RPL9 PE=1 SV=1
Length = 188
Score = 168 bits (426), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 126/193 (65%), Gaps = 5/193 (2%)
Query: 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKI 60
M+ +L+ + IP+ V + +++EV+GP G + R F++ ++D T +K+
Sbjct: 1 MRHLLTEVNVPIPDKVTITAKQRVVEVKGPLGTIKRAFRYASVDIQKPTADN-----VKL 55
Query: 61 DAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNF 120
W SRK A +++ S ++N+I GVT+GY++KM+ +AHFPI ++A SIEI++F
Sbjct: 56 QIWQASRKERAVLQSIASQIKNMIRGVTEGYKFKMKLAFAHFPIQEAVAKDGSSIEIKHF 115
Query: 121 LGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEK++RR++ L GV + R D+ K+ L L G D+ VS++ ALI+Q C VK KDIR+FLD
Sbjct: 116 LGEKRIRRIQALPGVKISRKDEEKNTLTLQGIDLNNVSQTCALIHQSCLVKEKDIRQFLD 175
Query: 181 GIYVSEKGTIVGE 193
GIYVS+K + E
Sbjct: 176 GIYVSDKRLAMNE 188
>sp|A2BMD5|RL6_HYPBU 50S ribosomal protein L6P OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=rpl6p PE=3 SV=1
Length = 186
Score = 156 bits (395), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 84/189 (44%), Positives = 127/189 (67%), Gaps = 8/189 (4%)
Query: 2 KTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHL-NLDFHLMTDGETGKRKLKI 60
K + +E + +PEGV+V I+ + V+GP+G+L+R+F H N+ L D E GK K+ +
Sbjct: 3 KAVYVAEEVRVPEGVEVSIDGLKVTVKGPKGELTRDFSHARNIVIRLDED-EEGK-KVVV 60
Query: 61 DAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNF 120
+A+F +R+ A + T +H++N+ITGVTKG+RYK++ VY+HFP+ + DK + I NF
Sbjct: 61 EAYFANRRVKALVGTIAAHIENMITGVTKGFRYKLKIVYSHFPVTVKV-QGDKVV-IENF 118
Query: 121 LGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
LGEK R +++ GVTV KD++I++G DIE V ++AA I Q VK+KD R F+D
Sbjct: 119 LGEKAPRIAKIMPGVTVKVQ---KDDVIVEGIDIEAVGQTAANIEQATKVKDKDRRVFID 175
Query: 181 GIYVSEKGT 189
GIY+ EKG
Sbjct: 176 GIYIYEKGV 184
>sp|O02376|RL9_HAECO 60S ribosomal protein L9 (Fragment) OS=Haemonchus contortus PE=2
SV=1
Length = 141
Score = 145 bits (366), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 65/131 (49%), Positives = 93/131 (70%), Gaps = 5/131 (3%)
Query: 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKI 60
MK + S++T++ P+GV + +++ V GPRG L R+F+HL+++ GK +L++
Sbjct: 1 MKLVESNDTVDFPDGVTFTVKNRVVHVTGPRGTLKRDFRHLHMEME-----RVGKNQLRV 55
Query: 61 DAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNF 120
WFG RK AAIRT SH+QN+I GVTKG+RYKMR VYAHFPIN ++ + +++EIRNF
Sbjct: 56 RKWFGVRKEIAAIRTVCSHIQNMIKGVTKGFRYKMRSVYAHFPINVTLQDGGRTVEIRNF 115
Query: 121 LGEKKVRRVEM 131
LGEK VR V +
Sbjct: 116 LGEKIVRPVPL 126
>sp|B8D5V4|RL6_DESK1 50S ribosomal protein L6P OS=Desulfurococcus kamchatkensis (strain
1221n / DSM 18924) GN=rpl6p PE=3 SV=1
Length = 184
Score = 134 bits (336), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 113/182 (62%), Gaps = 8/182 (4%)
Query: 7 SETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGS 66
+E +EIPE V V+++ + V+GP+G ++R+F H F + D R + ++ +
Sbjct: 8 AEKVEIPENVAVEVDGLRVTVKGPKGIITRDFSHARGVFIRLED-----RVVIVETFVAD 62
Query: 67 RKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKV 126
RK A + T +H++N+ITGV +GYRYK++ +++HFPI S+ +K + IRNF+GEK
Sbjct: 63 RKQKALVGTIAAHIRNMITGVVRGYRYKLKIIFSHFPITVSVDEKNKVVRIRNFMGEKSD 122
Query: 127 RRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 186
R ++ V V S +++I++G DIE V +AA I + V ++D R F+DGIY+ E
Sbjct: 123 RIAKIYGNVKVKVSG---EDIIIEGVDIEEVGLTAASIERATRVTDRDRRVFMDGIYIYE 179
Query: 187 KG 188
KG
Sbjct: 180 KG 181
>sp|A8AC04|RL6_IGNH4 50S ribosomal protein L6P OS=Ignicoccus hospitalis (strain KIN4/I /
DSM 18386 / JCM 14125) GN=rpl6p PE=3 SV=1
Length = 186
Score = 128 bits (321), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 103/160 (64%), Gaps = 6/160 (3%)
Query: 25 IEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLI 84
++V GP+G+L R+F H + E GK+++ ++ +F +RK A + T +H++N+I
Sbjct: 26 VKVRGPKGELERDFSHAK-GIRIRVVEEEGKKQVLVETFFANRKRKALVNTVAAHIKNMI 84
Query: 85 TGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK 144
TGVTKG+RYKM+ V++HFPI+ + +EI NF+GEK R ++L GVTV +
Sbjct: 85 TGVTKGWRYKMKIVFSHFPISVKVVG--DRVEIHNFIGEKAPRVAKVLPGVTVKVQGR-- 140
Query: 145 DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 184
++I++G DIE V+++AA I Q + D R F+DGIY+
Sbjct: 141 -DVIIEGTDIEKVAQTAANIEQATKITEFDRRVFMDGIYI 179
>sp|A3DNC3|RL6_STAMF 50S ribosomal protein L6P OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=rpl6p PE=3 SV=1
Length = 185
Score = 125 bits (315), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 113/181 (62%), Gaps = 7/181 (3%)
Query: 8 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSR 67
E ++IPE V V+IN ++V GP+G + R+F H+ +++ E K + ++ +F R
Sbjct: 9 EEIDIPENVTVEINGLKVKVNGPKGSIERDFSHVR---NIILRKENSK--IIVETFFADR 63
Query: 68 KTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVR 127
+ A + T SH++N+I GV KGYRYK++ +Y+HFPI + + ++ + I+NFLGEK
Sbjct: 64 RKKALVGTIASHIENMIKGVLKGYRYKLKIIYSHFPITVEVDDRNRIVRIKNFLGEKS-D 122
Query: 128 RVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 187
R+ + G V + K +D +I++G DIE V ++AA I VK+KD R F DGIY+ +
Sbjct: 123 RIAKIIGEDVKVTVKGED-IIVEGIDIEHVGQTAANIELATKVKDKDRRVFADGIYIYDW 181
Query: 188 G 188
G
Sbjct: 182 G 182
>sp|Q975J6|RL6_SULTO 50S ribosomal protein L6P OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=rpl6p PE=3 SV=1
Length = 186
Score = 125 bits (315), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 114/194 (58%), Gaps = 12/194 (6%)
Query: 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKI 60
MK + E +EIP+G+ V I I+V+GP+G++ ++F H++ + K+ +
Sbjct: 1 MKAVHLYEEIEIPQGINVNIEGMKIKVKGPKGEIEKDFSHIS-----GIEIRKEDNKIVV 55
Query: 61 DAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNF 120
+ F R+ A + ++H++N+ TGVTKGYRY ++ +Y HFP+ ++ + ++I+N
Sbjct: 56 ETTFADRRKKAQFYSIIAHIENMFTGVTKGYRYYLKIIYTHFPVTVKVSGNE--VQIQNL 113
Query: 121 LGEKKVRRVEMLDGVTVLRSDKVKDE-LILDGNDIELVSRSAALINQKCHVKNKDIRKFL 179
+GEK +RR +++ GV V VK E +I++G DIE V ++AA I + D R F
Sbjct: 114 IGEKNIRRAKIMTGVKV----NVKGEDIIVEGQDIEKVGQTAANIELASKITGYDRRVFA 169
Query: 180 DGIYVSEKGTIVGE 193
DGIY+ +K I E
Sbjct: 170 DGIYIYKKEVIGSE 183
>sp|Q5JJG4|RL6_PYRKO 50S ribosomal protein L6P OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=rpl6p PE=3 SV=1
Length = 184
Score = 124 bits (311), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 108/182 (59%), Gaps = 13/182 (7%)
Query: 8 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSR 67
E +EIPEGV+V + ++V+GP+G+L R K+ + DG K+ I F +
Sbjct: 9 EEIEIPEGVEVTVEGNTVKVKGPKGELQRELKYPGVQI-FTEDG-----KVVIYKEFPRK 62
Query: 68 KTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVR 127
K A +RT +H+ N+I GVT+G++Y+++ VY+HFP+ + + IE NFLGEK R
Sbjct: 63 KDVAIVRTFKAHINNMIKGVTEGFKYRLKVVYSHFPMTVKVQGDEVVIE--NFLGEKNPR 120
Query: 128 RVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 186
R ++L GVTV KVK E+ ++G D E V ++AA I Q + D R F DGIY+ E
Sbjct: 121 RAKILPGVTV----KVKGSEIEVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVE 176
Query: 187 KG 188
K
Sbjct: 177 KA 178
>sp|Q9V1V1|RL6_PYRAB 50S ribosomal protein L6P OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=rpl6p PE=3 SV=1
Length = 184
Score = 124 bits (311), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 108/181 (59%), Gaps = 13/181 (7%)
Query: 8 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSR 67
E +EIPEGV+V + ++V+GP+G++ R + + E GK + D F R
Sbjct: 9 EEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFV----EGGKVVIYKD--FPRR 62
Query: 68 KTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVR 127
K A +RT +H+ N+I GVT+G+ YK++ VY+HFPI + D+ I I NFLGEK R
Sbjct: 63 KDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKV-QGDEVI-IENFLGEKAPR 120
Query: 128 RVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 186
R ++L GVTV KVK E+I++G D E V ++AA I Q + D R F DGIY+ E
Sbjct: 121 RAKILPGVTV----KVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVE 176
Query: 187 K 187
K
Sbjct: 177 K 177
>sp|Q9YF91|RL6_AERPE 50S ribosomal protein L6P OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rpl6p PE=3
SV=1
Length = 182
Score = 124 bits (311), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 112/184 (60%), Gaps = 12/184 (6%)
Query: 8 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSR 67
E +E+PEGV V I+ ++V GP+G++ R+F H + D + ++++F
Sbjct: 9 ERVEVPEGVTVSIDGMRVKVSGPKGEVERDFSHARGVLIRLEDNS-----VVVESFFAKA 63
Query: 68 KTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVR 127
+ A + H++N+I GV G+RYK++ +Y+HFPIN + DK I I NFLGEK +R
Sbjct: 64 RQRALVGAIAGHIRNMIKGVQGGFRYKLKIMYSHFPINVKV-EGDKFI-ISNFLGEKGLR 121
Query: 128 RVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 186
++ GV V +VK ++I++G D+E V+++AA I VK+KD RKF+DGIY+ E
Sbjct: 122 IARIMPGVKV----QVKGSDVIVEGIDVEKVAQTAANIELATKVKDKDRRKFMDGIYIYE 177
Query: 187 KGTI 190
+ I
Sbjct: 178 REVI 181
>sp|B6YSN0|RL6_THEON 50S ribosomal protein L6P OS=Thermococcus onnurineus (strain NA1)
GN=rpl6p PE=3 SV=1
Length = 184
Score = 124 bits (310), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 73/181 (40%), Positives = 105/181 (58%), Gaps = 11/181 (6%)
Query: 8 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSR 67
E +EIPEGV+V I +++V GP+G+L R K+ + DG K+ I F +
Sbjct: 9 EEVEIPEGVEVTIERNVVKVRGPKGELERELKYPGVQI-FTEDG-----KVVIYKEFPRK 62
Query: 68 KTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVR 127
K A RT +H+ N+I GVT+G+ YK++ VY+HFP+ + + IE NFLGEK R
Sbjct: 63 KDIAIARTFKAHIANMIKGVTEGFTYKLKVVYSHFPMTVKVQGDEVVIE--NFLGEKNPR 120
Query: 128 RVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 187
R ++L GVTV + E+I++G D E V ++AA I Q + D R F DGIY+ EK
Sbjct: 121 RAKILPGVTV---KVMGSEVIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177
Query: 188 G 188
Sbjct: 178 A 178
>sp|Q8U015|RL6_PYRFU 50S ribosomal protein L6P OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=rpl6p PE=1 SV=1
Length = 184
Score = 121 bits (303), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 108/182 (59%), Gaps = 13/182 (7%)
Query: 8 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSR 67
E +EIPEGV+V + ++V+GP+G+L R F + E G + D F R
Sbjct: 9 EEVEIPEGVEVTVEGYKVKVKGPKGELEREFFWPGIQIFT----EDGNVVIYKD--FPRR 62
Query: 68 KTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVR 127
K A RT +H++N+I GVT+G+ YK++ VY+HFPI+ + D+ I I NFLGEK R
Sbjct: 63 KDVAIARTFAAHIRNMIKGVTEGFTYKLKVVYSHFPISVKV-QGDEVI-IENFLGEKAPR 120
Query: 128 RVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 186
+ ++L GVTV KV+ E+I++G D E V ++AA I Q + D R F DGIY+ E
Sbjct: 121 KAKILPGVTV----KVRGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRIFQDGIYIVE 176
Query: 187 KG 188
K
Sbjct: 177 KA 178
>sp|A6VH01|RL6_METM7 50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=rpl6p PE=3 SV=1
Length = 182
Score = 119 bits (299), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 104/184 (56%), Gaps = 11/184 (5%)
Query: 5 LSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWF 64
L E +EIPE V V++N + V+ +L R+ + ++ DG K+ I+ F
Sbjct: 6 LIREEIEIPENVNVEVNGSTVAVKSGAKELKRDLLYPGIEIS-TEDG-----KVVIECTF 59
Query: 65 GSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEK 124
+ +A + T SH+QN+ITGVT G+ YK+ YAHFP+ S ++ I NFLGEK
Sbjct: 60 PRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKG--NTVTIDNFLGEK 117
Query: 125 KVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 184
R +++DGVTV S +E+I+ G + E V ++AA I Q VK +D R F DGIY+
Sbjct: 118 YTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYI 174
Query: 185 SEKG 188
EK
Sbjct: 175 VEKA 178
>sp|Q9UX91|RL6_SULSO 50S ribosomal protein L6P OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=rpl6p PE=3 SV=1
Length = 181
Score = 119 bits (299), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 114/191 (59%), Gaps = 12/191 (6%)
Query: 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKI 60
M+ ++ E +EIP+ V V + II+++GP+G++ ++F + DG K+ +
Sbjct: 1 MQIVILREEIEIPKNVVVDLKGSIIKIKGPKGEVVKDFSFAK-GIQISLDG----NKIVL 55
Query: 61 DAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNF 120
+ F +R+ A + +SH++N+ITGVTKGYRY ++ +Y HFP + + + ++I N
Sbjct: 56 ETTFANRRKKAVFYSIVSHIKNMITGVTKGYRYYLKIIYTHFPTSVKVVGNE--VQITNL 113
Query: 121 LGEKKVRRVEMLDGVTVLRSDKVKDE-LILDGNDIELVSRSAALINQKCHVKNKDIRKFL 179
+GEK RR ++L+GV V VK E ++++G ++E V+++AA I + D R F
Sbjct: 114 IGEKNTRRAQILEGVKV----TVKGEDIVVEGPNLEAVAQTAANIESASKISGFDRRIFS 169
Query: 180 DGIYVSEKGTI 190
DGI++ +K I
Sbjct: 170 DGIFIYKKEVI 180
>sp|Q0W1X2|RL6_UNCMA 50S ribosomal protein L6P OS=Uncultured methanogenic archaeon RC-I
GN=rpl6p PE=3 SV=1
Length = 177
Score = 119 bits (299), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 107/179 (59%), Gaps = 12/179 (6%)
Query: 10 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKT 69
+E+P+GV V ++ + +G +G++SR F+ + + TDG K+ ++ ++T
Sbjct: 9 IEVPQGVTVTVSGATLTTKGQKGQISREFRFPGIS--VRTDGG----KVIVETGKDDKQT 62
Query: 70 SAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRV 129
A + T SH++N++TGV++GY Y M+ VYAHFPI + DK + I NFLGE+K R
Sbjct: 63 KATVGTYASHIKNMMTGVSEGYEYHMKIVYAHFPIQVKVEGKDK-VTIGNFLGERKARTA 121
Query: 130 EMLDGVTV-LRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 187
++ V ++ DKV +L G + E + ++AA I Q C ++ +D R F DGIY++ K
Sbjct: 122 NIVGETKVTVQGDKV----VLTGINKEDLGQTAANIEQACRIRKRDPRVFQDGIYITSK 176
>sp|A4FWA5|RL6_METM5 50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=rpl6p PE=3 SV=1
Length = 182
Score = 119 bits (299), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 104/184 (56%), Gaps = 11/184 (5%)
Query: 5 LSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWF 64
L E +EIPE V V+IN + V+ +L R+ + ++ DG K+ I+ F
Sbjct: 6 LIREEIEIPENVNVEINGNTVAVKSGAKELRRDLMYPGIEIS-TEDG-----KVVIECTF 59
Query: 65 GSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEK 124
+ +A + T SH+QN+ITGVT G+ YK+ YAHFP+ S ++ I NFLGEK
Sbjct: 60 PRKVQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKG--NTVTIDNFLGEK 117
Query: 125 KVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 184
R +++DGVTV S +E+I+ G + E V ++AA I Q VK +D R F DGIY+
Sbjct: 118 YTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYI 174
Query: 185 SEKG 188
EK
Sbjct: 175 VEKA 178
>sp|O59433|RL6_PYRHO 50S ribosomal protein L6P OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl6p PE=3 SV=2
Length = 184
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 107/182 (58%), Gaps = 13/182 (7%)
Query: 8 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSR 67
E +EIPEGV+V + ++V+GP+G++ + + + E GK + D F R
Sbjct: 9 EEIEIPEGVEVSVQDYNVKVKGPKGEVEKKLFWPGVKIFV----EDGKVVIYKD--FPRR 62
Query: 68 KTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVR 127
K A +RT +H+ N+I GVT+G+ YK++ VY+HFPI + D+ I I NFLGEK R
Sbjct: 63 KDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKV-QGDEVI-IENFLGEKAPR 120
Query: 128 RVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 186
R ++L GVTV KVK E+I++G D E ++AA I Q + D R F DGIY+ E
Sbjct: 121 RAKILPGVTV----KVKGQEIIVEGIDKEATGQTAANIEQATRITKWDRRVFQDGIYIVE 176
Query: 187 KG 188
K
Sbjct: 177 KA 178
>sp|Q6LXD7|RL6_METMP 50S ribosomal protein L6P OS=Methanococcus maripaludis (strain S2 /
LL) GN=rpl6p PE=3 SV=1
Length = 182
Score = 116 bits (291), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 103/184 (55%), Gaps = 11/184 (5%)
Query: 5 LSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWF 64
L E +EIPE V V+IN + V+ +L R + ++ DG K+ I+ F
Sbjct: 6 LIREEIEIPENVNVEINGSTVVVKSGAKELKRELMYPGIEIS-TEDG-----KVVIECAF 59
Query: 65 GSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEK 124
+ +A + T SH+QN+ITGVT G+ YK+ YAHFP+ S ++ I NFLGEK
Sbjct: 60 PRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKG--NTVMIDNFLGEK 117
Query: 125 KVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 184
R +++DGVTV S +++++ G + E V ++AA I Q VK +D R F DGIY+
Sbjct: 118 YTRTAKIMDGVTVKVSG---EDVVVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYI 174
Query: 185 SEKG 188
EK
Sbjct: 175 VEKA 178
>sp|A0B9V4|RL6_METTP 50S ribosomal protein L6P OS=Methanosaeta thermophila (strain DSM
6194 / PT) GN=rpl6p PE=3 SV=1
Length = 176
Score = 114 bits (286), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 106/178 (59%), Gaps = 11/178 (6%)
Query: 10 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKT 69
++IP+GV V+I+ + + V+GP+G+LSR + +++ + K+ I + ++
Sbjct: 9 LDIPDGVDVQISGRSVRVKGPKGELSRELWYPDIEI------KREDSKILIRSVARKKQH 62
Query: 70 SAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRV 129
A + T +H++N+I GVT G+ Y+MR VY+HFPI + AD + I NFLGE+K R
Sbjct: 63 LAMVGTIAAHIKNMIRGVTDGFEYRMRVVYSHFPIQVKV--ADGKVAISNFLGERKPRFA 120
Query: 130 EMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 187
++ V V + KDE+++ G D E V ++ A I Q V+ D+R F DGIY+ EK
Sbjct: 121 TIVGDVNV---EVGKDEILIRGMDKEAVGQTMANIEQATRVRGFDVRIFQDGIYLVEK 175
>sp|A9A9P8|RL6_METM6 50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=rpl6p PE=3 SV=1
Length = 182
Score = 114 bits (286), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 102/184 (55%), Gaps = 11/184 (5%)
Query: 5 LSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWF 64
L E +EIP V V+IN + V+ +L R+ + ++ DG K+ I+ F
Sbjct: 6 LIREEIEIPANVNVEINGNTVAVKSGAKELKRDLLYPGIEIS-TEDG-----KVVIECTF 59
Query: 65 GSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEK 124
+ +A + T SH+QN+I GVT G+ YK+ YAHFP+ S ++ I NFLGEK
Sbjct: 60 PRKAQTAIVGTYRSHIQNMIKGVTDGFEYKLVIRYAHFPMKVSAKG--NTVMIDNFLGEK 117
Query: 125 KVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 184
R +++DGVTV S +E+I+ G + E V ++AA I Q VK +D R F DGIY+
Sbjct: 118 YTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYI 174
Query: 185 SEKG 188
EK
Sbjct: 175 VEKA 178
>sp|Q2FSG5|RL6_METHJ 50S ribosomal protein L6P OS=Methanospirillum hungatei (strain JF-1
/ DSM 864) GN=rpl6p PE=3 SV=1
Length = 176
Score = 114 bits (285), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 98/176 (55%), Gaps = 13/176 (7%)
Query: 10 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKT 69
+ IP GV V ++ ++ V+GP+G L R+ + ++ + G ++ +
Sbjct: 7 VSIPSGVSVTMDGTVLHVKGPKGNLQRDMWYPGIEITI------GSEDVRFTTESQKKAV 60
Query: 70 SAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRV 129
++ + T SH N+ TGVTKGY Y M+ VY+HFPI + +++EI NFLGEK R
Sbjct: 61 TSMVGTLASHCSNMCTGVTKGYLYSMKVVYSHFPIQIKVVG--ETLEIVNFLGEKYPRSA 118
Query: 130 EMLDGVTVLRSDKV-KDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 184
+L G TV KV DE+ + G D E+V +AA I + ++++D R F DGIY+
Sbjct: 119 RILPGTTV----KVGSDEVTVTGIDKEVVGSTAANIERATRIRDRDPRVFQDGIYI 170
>sp|C5A269|RL6_THEGJ 50S ribosomal protein L6P OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=rpl6p PE=3 SV=1
Length = 184
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 108/182 (59%), Gaps = 13/182 (7%)
Query: 8 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSR 67
E +EIPEGV+V + +++V+GP+G+L R K+ + DG K+ + F +
Sbjct: 9 EEVEIPEGVEVTVENNVVKVKGPKGELERELKYPGVKI-FTEDG-----KVVVYKEFPRK 62
Query: 68 KTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVR 127
K A RT +H+ N+I GVT+G+ YK++ VY+HFP+ + D+ I I NFLGEK R
Sbjct: 63 KDIAIARTFKAHINNMIKGVTEGFTYKLKVVYSHFPVTVKV-QGDEVI-IENFLGEKNPR 120
Query: 128 RVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 186
R ++L GVTV KV+ E+ ++G D E V ++AA I Q + D R F DGIY+ E
Sbjct: 121 RAKILPGVTV----KVRGQEITVEGIDKEKVGQTAANIEQATRITKWDRRVFQDGIYIVE 176
Query: 187 KG 188
K
Sbjct: 177 KA 178
>sp|O26127|RL6_METTH 50S ribosomal protein L6P OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=rpl6p PE=3 SV=1
Length = 177
Score = 111 bits (278), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 105/184 (57%), Gaps = 14/184 (7%)
Query: 5 LSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWF 64
L E + IP+GV V I+ + V+GP+ +LSR F H + + D K+ ++ F
Sbjct: 6 LIREEIPIPDGVDVTIDGGVT-VKGPKWELSRKFNHSEISMAVEDD------KVVLEVKF 58
Query: 65 GSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEK 124
+K A I T +H+ N+ITGVT+G+RY+M+ VYAHFP++ +A DK + I NFLGE+
Sbjct: 59 PKKKDKAMIGTVRAHISNMITGVTEGFRYRMKIVYAHFPMSVKVA-GDKVV-IENFLGER 116
Query: 125 KVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 183
R + V +VK DE+ + G + E V ++ A I Q +K +D R F DGIY
Sbjct: 117 HPRTARFVGDTKV----QVKGDEVEITGINKEHVGQTMANIEQATKIKGRDPRVFQDGIY 172
Query: 184 VSEK 187
+ K
Sbjct: 173 LVSK 176
>sp|P54042|RL6_METJA 50S ribosomal protein L6P OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rpl6p PE=3 SV=1
Length = 182
Score = 110 bits (275), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 103/182 (56%), Gaps = 11/182 (6%)
Query: 7 SETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGS 66
E ++IPE V+V+IN + V+ +L R F+H + D ++ I +
Sbjct: 8 EERVKIPENVQVEINNNEVVVKSGGKELRRRFEHPKIVIKKEGD------EIVIFCEYPR 61
Query: 67 RKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKV 126
RK A + T +H+ N+I GVT+G+ YK++ YAHFP+ S+ + IE NFLGEK
Sbjct: 62 RKDKAMVGTIRAHINNMIKGVTEGFTYKLKIRYAHFPMKVSVKGNEVIIE--NFLGEKHP 119
Query: 127 RRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 186
RR +++GVTV S +++I+ G D E V ++AA I Q +K +D R F DGIY+ E
Sbjct: 120 RRARIMEGVTVKISG---EDVIVTGIDKEKVGQTAANIEQATRIKGRDPRVFQDGIYIVE 176
Query: 187 KG 188
K
Sbjct: 177 KA 178
>sp|Q8PV34|RL6_METMA 50S ribosomal protein L6P OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=rpl6p PE=3 SV=1
Length = 176
Score = 110 bits (274), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 104/181 (57%), Gaps = 11/181 (6%)
Query: 7 SETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGS 66
+ T+EIPEGV V ++ + +GP+G + R F + + + +GE + +DA
Sbjct: 6 ARTIEIPEGVSVSLSQDVFTAKGPKGTVERTFWYPGIKIEV-REGE-----VVVDAESSR 59
Query: 67 RKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKV 126
++ A + T SH++NLI GV++G+ KM VYAHFP+ + K++ I NFLGEKK
Sbjct: 60 KEQKAMVGTFASHLKNLIIGVSEGFECKMNIVYAHFPMQVKVEG--KTLVIGNFLGEKKP 117
Query: 127 RRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 186
R ++L V S +E+++ G + E V ++AA I QK +K D R F DGIY+ +
Sbjct: 118 RIAKILGETKVKVSG---NEIVVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQ 174
Query: 187 K 187
K
Sbjct: 175 K 175
>sp|Q18GG5|RL6_HALWD 50S ribosomal protein L6P OS=Haloquadratum walsbyi (strain DSM
16790) GN=rpl6p PE=3 SV=1
Length = 182
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 100/182 (54%), Gaps = 15/182 (8%)
Query: 10 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKT 69
+EIPE V +++ + VEGP G ++R + ++ + D + ++ D KT
Sbjct: 6 IEIPENVSAEVSNLALTVEGPNGSVTRTLWYPSVTVSVDEDADADAVVIETDE--TDAKT 63
Query: 70 SAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRV 129
SA + T SHV N+I GVT G+ Y+M YAHFP+ S+ D+ I I NFLGEK RR
Sbjct: 64 SATVGTFESHVSNMIHGVTDGWSYEMEVYYAHFPMQVSV-EGDEVI-IENFLGEKASRR- 120
Query: 130 EMLDGVTVLRSD---KVKDELI-LDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVS 185
T +R D ++ E++ L G E V ++AA I Q V +KD R F DG+Y++
Sbjct: 121 ------TPIRGDTNVQIDGEMVTLTGPSKEDVGQTAADIEQLTRVTDKDTRIFQDGVYIT 174
Query: 186 EK 187
+K
Sbjct: 175 QK 176
>sp|A5UL72|RL6_METS3 50S ribosomal protein L6P OS=Methanobrevibacter smithii (strain PS
/ ATCC 35061 / DSM 861) GN=rpl6p PE=3 SV=1
Length = 178
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 103/180 (57%), Gaps = 11/180 (6%)
Query: 8 ETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSR 67
E +EIPEGV+V IN + V+GP G+ SR F + N+D +T+ E + ++ F +
Sbjct: 9 EEIEIPEGVEVIINNNEVTVKGPNGEDSRKFTYPNVD---ITEVE---NNVVLETSFPRK 62
Query: 68 KTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVR 127
K A I T +H+ N+ITGVT G+ Y M+ V+AHFP+ + N D + I NFLGE+ R
Sbjct: 63 KDKAMIGTTKAHISNMITGVTDGFEYHMKIVFAHFPMTVKV-NKDVVV-IDNFLGERHPR 120
Query: 128 RVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 187
+++ V+ DE+ + G + E V ++ A + Q +K +D R F DGIY+ K
Sbjct: 121 TAKVVGSAKVVVKG---DEVTITGINKEHVGQTMANLEQATKIKGRDPRVFQDGIYLISK 177
>sp|O05637|RL6_SULAC 50S ribosomal protein L6P OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=rpl6p PE=3 SV=1
Length = 189
Score = 107 bits (267), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 112/191 (58%), Gaps = 12/191 (6%)
Query: 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKI 60
+K E ++IP+ VKV + +++V+GP+G++ ++F + + +G K+ +
Sbjct: 4 LKAAYIREEIQIPDKVKVSLENNVLKVKGPKGEVIKDFSYAKGIRIQLNEG-----KIIL 58
Query: 61 DAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNF 120
+ F R+ A + + ++H++N+ITG GYRY ++ + HFPI+ ++ + +++ N
Sbjct: 59 ETTFADRRKKALLYSIIAHIKNMITGTINGYRYYLKVISTHFPISVKVSGDE--VQVSNL 116
Query: 121 LGEKKVRRVEMLDGVTVLRSDKVKDE-LILDGNDIELVSRSAALINQKCHVKNKDIRKFL 179
+GEK +RR ++L GV V VK E ++++G+DI V+++AA I + D R F
Sbjct: 117 IGEKNIRRAKILPGVKV----TVKGEDIVVEGSDIYNVAQTAANIESSTKIVGYDRRIFS 172
Query: 180 DGIYVSEKGTI 190
DGIY+ +K I
Sbjct: 173 DGIYIYKKEVI 183
>sp|Q9HPB8|RL6_HALSA 50S ribosomal protein L6P OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=rpl6p PE=1 SV=3
Length = 178
Score = 107 bits (266), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 97/178 (54%), Gaps = 11/178 (6%)
Query: 10 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKT 69
+EIP+ V +++ + VEGP G ++R + ++D + D + + + KT
Sbjct: 6 IEIPDDVTAEVDHLDLTVEGPEGSVTRRLWYPDVDVSVEDDA------VVVASEVDDAKT 59
Query: 70 SAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRV 129
+ + T SHV N+ GV++G+ YK+ Y+HFP+ + + + I+NFLGEK RR
Sbjct: 60 DSTVGTFESHVANMFHGVSEGWEYKLEVHYSHFPMQVDVEG--EEVVIQNFLGEKAARRT 117
Query: 130 EMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 187
++ V+ D+ E+ L G IE V ++AA I Q V +KD R F DG+Y+ EK
Sbjct: 118 QIRGDTDVVVDDE---EVTLSGPSIEDVGQTAADIEQLTRVTDKDTRVFQDGVYIVEK 172
>sp|P14135|RL6_HALMA 50S ribosomal protein L6P OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rpl6p PE=1
SV=3
Length = 178
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 102/178 (57%), Gaps = 11/178 (6%)
Query: 10 MEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKT 69
+EIPE V + + I VEG G ++R + ++D + DG+T + I++ + KT
Sbjct: 6 LEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSV--DGDT----VVIESDEDNAKT 59
Query: 70 SAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRV 129
+ I T SH++N+ GVT+G+ Y M Y+HFP+ ++ + IE NFLGEK RR
Sbjct: 60 MSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIE--NFLGEKAPRRT 117
Query: 130 EMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 187
+ G T + D +EL + G DIE V ++AA I Q + +KD+R F DG+Y++ K
Sbjct: 118 -TIHGDTDVEID--GEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRK 172
>sp|A6UQ60|RL6_METVS 50S ribosomal protein L6P OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=rpl6p PE=3 SV=1
Length = 182
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 101/184 (54%), Gaps = 11/184 (5%)
Query: 5 LSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWF 64
L E +EIP V V++N + V+ L R ++ + + K+ +++ F
Sbjct: 6 LIREEIEIPGNVSVEVNGSEVVVKSGAKVLKRELAFPGIEIKMENE------KVVVESTF 59
Query: 65 GSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEK 124
+ +A + T SH+QN+I GV++G+ YK+ YAHFP+ + ++ I NFLGEK
Sbjct: 60 PKKNQTAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMKVTFKG--NTVIIDNFLGEK 117
Query: 125 KVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 184
R ++++GVTV + +E+I+ G + E V ++AA I Q VK +D R F DGIY+
Sbjct: 118 YPRTAKVMEGVTVKVNG---EEVIVSGTNKEFVGQTAANIEQATKVKGRDTRIFQDGIYI 174
Query: 185 SEKG 188
EK
Sbjct: 175 VEKA 178
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,859,403
Number of Sequences: 539616
Number of extensions: 2561192
Number of successful extensions: 8094
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 376
Number of HSP's that attempted gapping in prelim test: 7267
Number of HSP's gapped (non-prelim): 721
length of query: 194
length of database: 191,569,459
effective HSP length: 111
effective length of query: 83
effective length of database: 131,672,083
effective search space: 10928782889
effective search space used: 10928782889
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)