Query 029415
Match_columns 194
No_of_seqs 147 out of 1036
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 12:33:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029415.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029415hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00179 60S ribosomal protein 100.0 1.1E-66 2.4E-71 430.0 22.8 185 3-193 2-188 (189)
2 PRK05518 rpl6p 50S ribosomal p 100.0 1.6E-66 3.5E-71 426.0 22.8 178 1-189 1-178 (180)
3 PTZ00027 60S ribosomal protein 100.0 3.4E-66 7.3E-71 427.3 23.6 188 1-192 1-188 (190)
4 TIGR03653 arch_L6P archaeal ri 100.0 1.1E-64 2.4E-69 412.0 22.6 169 7-187 1-170 (170)
5 COG0097 RplF Ribosomal protein 100.0 2.6E-57 5.6E-62 369.1 21.0 173 3-190 2-175 (178)
6 CHL00140 rpl6 ribosomal protei 100.0 5.9E-55 1.3E-59 357.3 21.9 169 3-188 2-173 (178)
7 TIGR03654 L6_bact ribosomal pr 100.0 6.2E-53 1.3E-57 344.5 22.4 159 3-176 1-162 (175)
8 PRK05498 rplF 50S ribosomal pr 100.0 1E-52 2.2E-57 344.1 22.5 169 3-188 2-173 (178)
9 KOG3254 Mitochondrial/chloropl 100.0 1.5E-44 3.2E-49 292.6 13.2 165 5-188 34-201 (211)
10 KOG3255 60S ribosomal protein 100.0 1.7E-29 3.6E-34 206.3 3.0 179 1-190 1-179 (179)
11 PF00347 Ribosomal_L6: Ribosom 99.8 5.1E-19 1.1E-23 125.2 7.2 74 12-90 1-77 (77)
12 PF00347 Ribosomal_L6: Ribosom 98.1 1.4E-06 3.1E-11 61.2 2.2 73 100-181 3-77 (77)
13 TIGR03653 arch_L6P archaeal ri 57.2 13 0.00027 30.4 3.2 21 9-29 114-134 (170)
14 COG0097 RplF Ribosomal protein 53.6 15 0.00033 30.3 3.2 30 8-37 113-143 (178)
15 cd02393 PNPase_KH Polynucleoti 52.8 35 0.00076 22.7 4.4 29 134-164 32-60 (61)
16 CHL00140 rpl6 ribosomal protei 52.8 1E+02 0.0022 25.2 7.9 56 105-168 16-76 (178)
17 PF12970 DUF3858: Domain of Un 52.2 87 0.0019 24.2 6.9 34 7-40 40-73 (116)
18 cd06479 ACD_HspB7_like Alpha c 51.9 14 0.0003 26.4 2.4 27 13-39 21-55 (81)
19 TIGR03654 L6_bact ribosomal pr 51.8 86 0.0019 25.5 7.4 56 105-168 15-75 (175)
20 PTZ00179 60S ribosomal protein 47.1 21 0.00045 29.6 3.1 12 156-167 67-78 (189)
21 PTZ00027 60S ribosomal protein 43.8 25 0.00054 29.2 3.1 13 156-168 68-80 (190)
22 PF00338 Ribosomal_S10: Riboso 43.6 51 0.0011 23.7 4.4 31 146-176 2-32 (97)
23 PRK05518 rpl6p 50S ribosomal p 43.4 26 0.00057 28.8 3.1 23 145-167 50-77 (180)
24 PRK05498 rplF 50S ribosomal pr 41.0 1.8E+02 0.004 23.6 7.7 52 111-168 20-76 (178)
25 cd00298 ACD_sHsps_p23-like Thi 40.7 24 0.00053 22.7 2.1 20 13-32 19-38 (80)
26 cd06469 p23_DYX1C1_like p23_li 40.1 53 0.0011 22.1 3.8 28 13-40 19-46 (78)
27 PF14506 CppA_N: CppA N-termin 37.6 1.4E+02 0.0031 23.3 6.2 76 100-178 22-99 (125)
28 PRK14424 acylphosphatase; Prov 37.5 12 0.00026 27.5 0.2 57 91-167 11-68 (94)
29 cd06477 ACD_HspB3_Like Alpha c 36.7 22 0.00049 25.4 1.5 19 13-31 20-38 (83)
30 cd06480 ACD_HspB8_like Alpha-c 35.3 24 0.00052 25.8 1.5 19 13-31 28-46 (91)
31 cd06478 ACD_HspB4-5-6 Alpha-cr 34.9 30 0.00064 24.5 1.9 18 13-30 20-37 (83)
32 cd06498 ACD_alphaB-crystallin_ 34.6 25 0.00055 25.0 1.5 18 13-30 20-37 (84)
33 PF00011 HSP20: Hsp20/alpha cr 34.4 1.4E+02 0.003 21.1 5.5 20 13-32 20-39 (102)
34 cd06476 ACD_HspB2_like Alpha c 34.1 26 0.00057 24.9 1.5 19 13-31 20-38 (83)
35 cd06497 ACD_alphaA-crystallin_ 31.3 31 0.00067 24.6 1.5 19 13-31 23-41 (86)
36 cd06481 ACD_HspB9_like Alpha c 30.1 36 0.00079 24.3 1.7 19 13-31 20-38 (87)
37 cd07429 Cby_like Chibby, a nuc 30.1 26 0.00057 26.7 1.0 14 176-189 52-65 (108)
38 PRK14434 acylphosphatase; Prov 29.9 23 0.00049 25.8 0.6 55 95-168 10-66 (92)
39 COG1072 CoaA Panthothenate kin 29.4 40 0.00086 29.9 2.1 36 121-159 167-202 (283)
40 cd06526 metazoan_ACD Alpha-cry 29.2 36 0.00077 23.7 1.5 20 13-32 20-39 (83)
41 cd06470 ACD_IbpA-B_like Alpha- 29.0 61 0.0013 23.0 2.8 19 13-31 24-42 (90)
42 cd06482 ACD_HspB10 Alpha cryst 28.7 37 0.00079 24.6 1.5 18 13-30 21-38 (87)
43 cd06475 ACD_HspB1_like Alpha c 25.9 47 0.001 23.7 1.7 19 13-31 23-41 (86)
44 PF14287 DUF4368: Domain of un 25.6 40 0.00086 23.5 1.2 36 153-188 9-47 (71)
45 cd02394 vigilin_like_KH K homo 24.7 1.5E+02 0.0032 19.0 3.9 19 145-164 43-61 (62)
46 PRK14421 acylphosphatase; Prov 23.8 23 0.00051 26.3 -0.3 56 91-166 8-64 (99)
47 PF10162 G8: G8 domain; Inter 23.5 2.2E+02 0.0048 21.5 5.2 36 7-46 12-52 (125)
48 COG0051 RpsJ Ribosomal protein 23.2 89 0.0019 23.7 2.8 33 144-176 5-37 (104)
49 PF05137 PilN: Fimbrial assemb 23.1 1.6E+02 0.0034 19.6 3.9 40 129-168 8-49 (78)
50 PRK14433 acylphosphatase; Prov 23.1 25 0.00055 25.3 -0.2 52 96-167 10-62 (87)
51 PRK14440 acylphosphatase; Prov 22.9 24 0.00053 25.6 -0.3 53 95-166 11-63 (90)
52 PRK14446 acylphosphatase; Prov 21.9 57 0.0012 23.6 1.5 51 96-166 11-62 (88)
53 PRK00596 rpsJ 30S ribosomal pr 21.3 1.3E+02 0.0027 22.4 3.3 27 145-171 6-32 (102)
54 KOG3591 Alpha crystallins [Pos 21.2 1.4E+02 0.0029 24.4 3.7 47 12-63 84-147 (173)
55 PRK13781 paaB phenylacetate-Co 21.1 33 0.00072 25.6 0.1 15 122-136 79-93 (95)
56 PRK14448 acylphosphatase; Prov 20.9 24 0.00052 25.6 -0.7 53 94-166 9-62 (90)
57 TIGR01049 rpsJ_bact ribosomal 20.8 1.3E+02 0.0029 22.0 3.3 28 145-172 3-30 (99)
58 PF14250 AbrB-like: AbrB-like 20.8 1.3E+02 0.0027 21.3 2.9 14 112-127 56-69 (71)
59 PRK14435 acylphosphatase; Prov 20.7 23 0.00051 25.6 -0.8 53 96-167 11-63 (90)
60 PRK14450 acylphosphatase; Prov 20.5 30 0.00066 25.0 -0.2 54 95-166 10-63 (91)
61 PF04863 EGF_alliinase: Alliin 20.5 35 0.00076 23.0 0.1 9 176-184 24-32 (56)
62 PF14324 PINIT: PINIT domain; 20.3 41 0.0009 26.3 0.5 28 6-33 73-102 (144)
No 1
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=100.00 E-value=1.1e-66 Score=429.96 Aligned_cols=185 Identities=54% Similarity=0.922 Sum_probs=170.6
Q ss_pred eeeeeeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEcccCccCCcEEEEEecCCChhhhhhHHHHHHHHhh
Q 029415 3 TILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQN 82 (194)
Q Consensus 3 ~~~~~~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli~N 82 (194)
.++...||.||+||+|+++++.|+|+||+|+|+++|++.++.+.++. ++++|.+++|+++++.+|+|||+||||+|
T Consensus 2 ~~~~~~pI~IP~~V~V~i~~~~ItVkGpkG~Ls~~~~~~~~~i~i~~----~~~~I~v~~~~~~kk~~al~Gt~rslI~N 77 (189)
T PTZ00179 2 KIKSQDTITIPEDVTVSVKDRIVTVKGKRGTLTKDLRHLQLDFRVNK----KNRTFTAVRWFGSKIPNSTINTALSHVRN 77 (189)
T ss_pred cccccccEeCCCCCEEEEeCCEEEEECCCcEEEEEcCCCCcEEEEEe----cCCEEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 35667899999999999999999999999999999998645555434 25789999999999999999999999999
Q ss_pred heeeeccceEEEEEEEEEEecceeEEccCCCeEEEEcccCceeeEEEecCCCeEEEecCC--CCcEEEEEecCHhHHHHH
Q 029415 83 LITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDK--VKDELILDGNDIELVSRS 160 (194)
Q Consensus 83 mI~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~gv~v~~~~~--~k~~I~i~GiDkq~Vgq~ 160 (194)
||+|||+||+++|+++|+||||||++ +|+.|+|+|+||||||+.++||+|+++++++| .|++|+|+|+|||+||||
T Consensus 78 MI~GVt~GF~k~L~ivgvgyp~ra~v--~g~~l~l~N~LG~sh~~~~~ip~gv~v~~~~~~~~k~~i~i~G~DKq~Vgq~ 155 (189)
T PTZ00179 78 MITGVTKGFRFKVRFAYAHFPISVSV--ENQLVEIRNFLGEKRVRRQVVADTVKVYRTDPSKVKDELVLEGNDLEQVSRE 155 (189)
T ss_pred HhhhhcCCEEEEEEEEEeCcceEEEE--cCCEEEEEecCCCCccEEEECCCCEEEEecCCcccCCEEEEEeCCHHHHHHH
Confidence 99999999999999999999999999 78999999999999999999999999999975 347999999999999999
Q ss_pred HHHHhcccccCCCceeeeeceEEEeeeeeeecC
Q 029415 161 AALINQKCHVKNKDIRKFLDGIYVSEKGTIVGE 193 (194)
Q Consensus 161 AA~Ir~~~~~Kgkd~R~f~DGiyv~~k~~~~~~ 193 (194)
||+|++.|++|+||+|+|||||||++|++...+
T Consensus 156 AA~i~~~~~~~~~d~r~f~dgiy~~~k~~~~~~ 188 (189)
T PTZ00179 156 AAVMHQLCLVKKKDIRKFLDGIYVQTKTNVEAE 188 (189)
T ss_pred HHHHHHhhcccCCCccEeecCEEEEEeeccccc
Confidence 999999999999999999999999999966544
No 2
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=100.00 E-value=1.6e-66 Score=425.98 Aligned_cols=178 Identities=40% Similarity=0.686 Sum_probs=169.5
Q ss_pred CceeeeeeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEcccCccCCcEEEEEecCCChhhhhhHHHHHHHH
Q 029415 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHV 80 (194)
Q Consensus 1 m~~~~~~~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli 80 (194)
|-.++.+.||.||+||+|+++++.|+|+||+|+|+++|+++.+++.++ +|++.+++|+++++++|+|||+||||
T Consensus 1 ~~~~~~~~pI~IP~~V~v~i~~~~v~VkGp~G~L~~~~~~~~v~i~~~------~~~i~v~~~~~~kk~ra~~gt~rslI 74 (180)
T PRK05518 1 MVAAYIREEIEIPEGVTVEIEGLVVTVKGPKGELTRDFWYPGVTISVE------DGKVVIETEFARKKTKAMVGTFASHI 74 (180)
T ss_pred CccccccccEEcCCCCEEEEECCEEEEECCCeEEEEEecCCcEEEEEE------CCEEEEEECCCCHHHHHHHHHHHHHH
Confidence 677899999999999999999999999999999999998767888742 58899999999999999999999999
Q ss_pred hhheeeeccceEEEEEEEEEEecceeEEccCCCeEEEEcccCceeeEEEecCCCeEEEecCCCCcEEEEEecCHhHHHHH
Q 029415 81 QNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRS 160 (194)
Q Consensus 81 ~NmI~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~gv~v~~~~~~k~~I~i~GiDkq~Vgq~ 160 (194)
+|||+|||+||+++|+++|+||||||++ +|+.|+|+|+||||||+.++||+||++++++ |+|+|+|+|||+||||
T Consensus 75 ~NmI~GVt~Gf~~~LelvGvGypira~~--~g~~l~l~n~LG~Sh~v~~~iP~gV~v~~~~---t~I~i~GiDKq~Vgq~ 149 (180)
T PRK05518 75 KNMIKGVTEGFEYKLKIVYSHFPMQVKV--QGNEVVIENFLGEKSPRRAKILGGVKVKVKG---EDVIVEGIDKEDVGQT 149 (180)
T ss_pred HhhheecccceEEEEEEEecCccEEEEE--cCCEEEEEeccccceeEEEeCCCCeEEEecC---CEEEEEeCCHHHHHHH
Confidence 9999999999999999999999999999 6889999999999999999999999999997 7999999999999999
Q ss_pred HHHHhcccccCCCceeeeeceEEEeeeee
Q 029415 161 AALINQKCHVKNKDIRKFLDGIYVSEKGT 189 (194)
Q Consensus 161 AA~Ir~~~~~Kgkd~R~f~DGiyv~~k~~ 189 (194)
||+||+.|+.|+||+|+|+|||||+||+.
T Consensus 150 AA~Ir~~~~~~~kd~r~f~dgiyv~~k~~ 178 (180)
T PRK05518 150 AANIEQATKIKGFDRRVFQDGIYIVEKEV 178 (180)
T ss_pred HHHHHHhhcccCCCCCEeecCEEEEEecc
Confidence 99999999999999999999999999975
No 3
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=100.00 E-value=3.4e-66 Score=427.34 Aligned_cols=188 Identities=59% Similarity=0.955 Sum_probs=171.7
Q ss_pred CceeeeeeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEcccCccCCcEEEEEecCCChhhhhhHHHHHHHH
Q 029415 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHV 80 (194)
Q Consensus 1 m~~~~~~~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli 80 (194)
|+.++...||.||+||+|+++++.|+|+||+|+|+++|+++++.+.+..+ +++|.+++|.++++.+|+|||+||||
T Consensus 1 ~~~~~~~~~I~IP~~V~V~i~~~~v~VkGp~G~L~~~~~~~~~~i~i~~~----~~~i~v~~~~~~~k~~a~~Gt~rslI 76 (190)
T PTZ00027 1 MKTIFSSEKIRIPEGVTVTVKSRKVTVTGKYGELTRSFRHLPVDIKLSKD----GKYIKVEMWFGTPSHLACIRTVCSHI 76 (190)
T ss_pred CcccccCCCEecCCCCEEEEECCEEEEECCCceEEEEecCCCceEEEEeC----CCEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999985445554342 58899999999999999999999999
Q ss_pred hhheeeeccceEEEEEEEEEEecceeEEccCCCeEEEEcccCceeeEEEecCCCeEEEecCCCCcEEEEEecCHhHHHHH
Q 029415 81 QNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRS 160 (194)
Q Consensus 81 ~NmI~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~gv~v~~~~~~k~~I~i~GiDkq~Vgq~ 160 (194)
+|||+|||+||+++|+++|+|||+.+.++++|+.|.|+|+||||||+.++||+||+++++++.+|+|+|+|+|||+||||
T Consensus 77 ~NmI~GVt~Gf~~~LeivGvGyra~~~v~~~g~~L~l~N~LG~Sh~i~~~iP~gv~v~~~~~~~t~I~i~G~DKq~Vgq~ 156 (190)
T PTZ00027 77 KNMMTGVTKKFQYKMRLVYAHFPINSNITDNGKTIEIRNFLGEKRVRTVKMLPGVVVEKSESVKDEIIVTGADLELVSRS 156 (190)
T ss_pred HHHhhhhcCCEEEEEEEEEeeeeEEEEEcCCCCEEEEEccCCCceeEEEECCCCeEEEeCCCCCCEEEEEeCCHHHHHHH
Confidence 99999999999999999999995433376689999999999999999999999999999986558999999999999999
Q ss_pred HHHHhcccccCCCceeeeeceEEEeeeeeeec
Q 029415 161 AALINQKCHVKNKDIRKFLDGIYVSEKGTIVG 192 (194)
Q Consensus 161 AA~Ir~~~~~Kgkd~R~f~DGiyv~~k~~~~~ 192 (194)
||+||+.|++|+||+|+|+|||||++|++..+
T Consensus 157 AA~I~~~~~~~~~d~r~f~dgiy~~~k~~~~~ 188 (190)
T PTZ00027 157 AALIHQSTLVRNKDIRKFLDGIYVSEKGTVDK 188 (190)
T ss_pred HHHHHHHhcccCCCccEeecCEEEEEeeeecc
Confidence 99999999999999999999999999995533
No 4
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=100.00 E-value=1.1e-64 Score=411.97 Aligned_cols=169 Identities=41% Similarity=0.716 Sum_probs=160.5
Q ss_pred eeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEe-cCCcEEEEEcccCccCCcEEEEEecCCChhhhhhHHHHHHHHhhhee
Q 029415 7 SETMEIPEGVKVKINAKIIEVEGPRGKLSRNF-KHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLIT 85 (194)
Q Consensus 7 ~~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~-~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli~NmI~ 85 (194)
++||.||++|+|+++++.|+|+||+|+|+++| ++ .+++.++ ++++.+++|+++++++|+|||+||||+|||+
T Consensus 1 ~~pI~IP~~V~v~i~~~~i~vkGp~G~L~~~~~~~-~v~i~~~------~~~i~v~~~~~~k~~~a~~gt~rsli~NmI~ 73 (170)
T TIGR03653 1 REEIEIPEGVSVTIEGNIVTVKGPKGEVTRELWYP-GIEISVE------DGKVVIETDFARKKDKAMVGTYRSHIKNMIK 73 (170)
T ss_pred CceEecCCCCEEEEeCCEEEEECCCeEEEEEEeCC-cEEEEEe------CCEEEEEeCCCCHHHHHHHHHHHHHHHhhee
Confidence 46999999999999999999999999999999 55 7888742 5889999999999999999999999999999
Q ss_pred eeccceEEEEEEEEEEecceeEEccCCCeEEEEcccCceeeEEEecCCCeEEEecCCCCcEEEEEecCHhHHHHHHHHHh
Q 029415 86 GVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALIN 165 (194)
Q Consensus 86 GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~gv~v~~~~~~k~~I~i~GiDkq~Vgq~AA~Ir 165 (194)
|||+||+++|+++|+|||+||++ +|+.|+|+|+||||||+.++||+||++++++ ++|+|+|+|||+||||||+||
T Consensus 74 GVt~Gf~~~LeivGvGy~~ra~~--~g~~L~l~n~LG~Sh~i~~~iP~gI~v~~~~---~~I~i~G~DKq~Vgq~AA~Ir 148 (170)
T TIGR03653 74 GVTEGFEYKMKVVYSHFPMQVKV--EGNKVVIENFLGEKAPRRAKIPGGVKVKVKG---EEVIVTGIDKEDVGQTAANIE 148 (170)
T ss_pred ecccCeEEEEEEEeccccEEEEE--cCCeEEEeeccccceeEEEECCCCeEEEecC---CEEEEEeCCHHHHHHHHHHHH
Confidence 99999999999999999999999 6888999999999999999999999999997 589999999999999999999
Q ss_pred cccccCCCceeeeeceEEEeee
Q 029415 166 QKCHVKNKDIRKFLDGIYVSEK 187 (194)
Q Consensus 166 ~~~~~Kgkd~R~f~DGiyv~~k 187 (194)
+.|++|+||+|+|+|||||+||
T Consensus 149 ~~~~~~~~d~r~f~dgiy~~~~ 170 (170)
T TIGR03653 149 QATRIKGRDPRVFQDGIYIVEK 170 (170)
T ss_pred HhhcccCCCccEeecCEEEEeC
Confidence 9999999999999999999986
No 5
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-57 Score=369.06 Aligned_cols=173 Identities=27% Similarity=0.456 Sum_probs=155.4
Q ss_pred eeeeeeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEcccCccCCcEEEEEecCCChhhhhhHHHHHHHHhh
Q 029415 3 TILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQN 82 (194)
Q Consensus 3 ~~~~~~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli~N 82 (194)
+++++.||.+|+||+|+++++.++|+||+|+|+++|++..|.++ .+ ++.+.+..++. ++.+|+|||+||||+|
T Consensus 2 sri~k~~i~~P~gV~V~i~~~~v~vkGpkGeL~~~~~~~~v~v~--~~----~~~~vv~~~~~-k~~~a~~Gt~rali~N 74 (178)
T COG0097 2 SRIGKRPIVIPAGVTVSIEGQVVTVKGPKGELTREFHDNVVKVE--VE----DNILVVRPVDG-KRKRALHGTVRALINN 74 (178)
T ss_pred CceeeccEecCCCeEEEEeccEEEEECCCcEEEEEecCcceEEE--ec----CCEEEEeeccc-chhHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999333555 42 47677776666 6667999999999999
Q ss_pred heeeeccceEEEEEEEEEEecceeEEccCCCeEEEEcccCceeeEEEecCCCeEEEecCCCCcEEEEEecCHhHHHHHHH
Q 029415 83 LITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAA 162 (194)
Q Consensus 83 mI~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~gv~v~~~~~~k~~I~i~GiDkq~Vgq~AA 162 (194)
||+|||+||+|+|+++|+|| ||++ .|+.|++ +||||||+.++||+|+++++++| |+|+|+|+|||+||||||
T Consensus 75 mv~GVteGf~~kL~ivgvgy--ra~v--~g~~l~l--~LG~shp~~~~ip~gi~v~v~~~--t~I~v~GidKe~VGQ~AA 146 (178)
T COG0097 75 MVKGVTEGFEKKLEIVGVGY--RAQV--VGGNLEL--FLGYSHPVVIEIPEGITVEVPGP--TEIVVEGIDKELVGQVAA 146 (178)
T ss_pred HheecccceEEEEEEEEecc--eeEE--eccEEEE--eecccCCeEEECCCCeEEEecCC--CEEEEEcCCHHHHhHHHH
Confidence 99999999999999999999 6777 4667777 99999999999999999999998 999999999999999999
Q ss_pred HHhcccccCCCceee-eeceEEEeeeeee
Q 029415 163 LINQKCHVKNKDIRK-FLDGIYVSEKGTI 190 (194)
Q Consensus 163 ~Ir~~~~~Kgkd~R~-f~DGiyv~~k~~~ 190 (194)
+||++|+.+.+|.|. |+||+||.+|+-.
T Consensus 147 ~Ir~~r~pepykgKgi~ydge~I~~K~gK 175 (178)
T COG0097 147 NIRAARKPEPYKGKGIRYDGEYIRRKEGK 175 (178)
T ss_pred HHHhccCCCCCCCcceEEcCEEEEEeccc
Confidence 999999988888888 9999999999854
No 6
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=100.00 E-value=5.9e-55 Score=357.33 Aligned_cols=169 Identities=25% Similarity=0.412 Sum_probs=157.8
Q ss_pred eeeeeeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEcccCccCCcEEEEEecCCChhhhhhHHHHHHHHhh
Q 029415 3 TILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQN 82 (194)
Q Consensus 3 ~~~~~~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli~N 82 (194)
+++++.||.||+||+|+++++.|+|+||+|+|+++|++ .+++..+ +|.+.++.|+++++.+|+|||+||||+|
T Consensus 2 srig~~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~-~v~i~~~------~~~i~v~~~~~~k~~~a~~gt~~slI~N 74 (178)
T CHL00140 2 SRIGKLPIKIPDNVNVSIDDQIIKVKGPKGTLSRKIPD-LITIEIQ------DNSLFVSKKDESKKARALHGLYRTLINN 74 (178)
T ss_pred CcccceeeecCCCCEEEEECCEEEEECCCEEEEEECCC-CeEEEEe------CCEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999 8888732 5789999999999999999999999999
Q ss_pred heeeeccceEEEEEEEEEEecceeEEccCCCeEEEEcccCceeeEEEecCCCeEEEecCCCCcEEEEEecCHhHHHHHHH
Q 029415 83 LITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAA 162 (194)
Q Consensus 83 mI~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~gv~v~~~~~~k~~I~i~GiDkq~Vgq~AA 162 (194)
||+||++||+++|+++|+|| ||.+ +|+.|.| +||||||+.++||+||+|++++| |+|+|+|+|||+||||||
T Consensus 75 mi~GVt~Gf~~~L~lvGvGy--r~~~--~g~~l~l--~LG~sh~i~~~IP~gv~v~~~~~--t~I~i~G~dke~Vgq~AA 146 (178)
T CHL00140 75 MVIGVSEGFEKKLELQGVGY--RAQV--QGKDLIL--NLGYSHPVKIKIPPGISVEVENN--TNITIKGIDKELVGQFAA 146 (178)
T ss_pred HHhhcccCceEEEEEEEEEE--EEEE--eCCcEEE--EecCCeeEEEECCCCeEEEeCCC--CEEEEEECCHHHHHHHHH
Confidence 99999999999999999999 8999 5788999 99999999999999999999998 899999999999999999
Q ss_pred HHhcccc---cCCCceeeeeceEEEeeee
Q 029415 163 LINQKCH---VKNKDIRKFLDGIYVSEKG 188 (194)
Q Consensus 163 ~Ir~~~~---~Kgkd~R~f~DGiyv~~k~ 188 (194)
+||++|+ |||||+| .+|.+|..|+
T Consensus 147 ~Ir~~r~pepYKGKGI~--y~~e~i~~K~ 173 (178)
T CHL00140 147 KIRSVRPPEPYKGKGIR--YKGEVIRRKA 173 (178)
T ss_pred HHhccCCCCCcCCccEe--ECCEEEEEec
Confidence 9999996 8999998 5666776654
No 7
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=100.00 E-value=6.2e-53 Score=344.53 Aligned_cols=159 Identities=27% Similarity=0.462 Sum_probs=150.3
Q ss_pred eeeeeeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEcccCccCCcEEEEEecCCChhhhhhHHHHHHHHhh
Q 029415 3 TILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQN 82 (194)
Q Consensus 3 ~~~~~~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli~N 82 (194)
+++++.||.||++|+|+++++.|+|+||+|+|+++|++ .+++.++ +|.+.++.|+++++++|+|||+||||+|
T Consensus 1 s~ig~~~I~IP~~V~v~~~~~~v~v~Gp~G~l~~~l~~-~i~i~~~------~~~i~v~~~~~~kk~~a~~gt~~s~i~N 73 (175)
T TIGR03654 1 SRIGKKPIAIPAGVEVTIDGNVVTVKGPKGELSRTLHP-GVTVKVE------DGQLTVSRPNDSKEARALHGTTRALINN 73 (175)
T ss_pred CcccccceecCCCcEEEEeCCEEEEEcCCeEEEEEcCC-CeEEEEE------CCEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999976 7888742 5889999999999999999999999999
Q ss_pred heeeeccceEEEEEEEEEEecceeEEccCCCeEEEEcccCceeeEEEecCCCeEEEecCCCCcEEEEEecCHhHHHHHHH
Q 029415 83 LITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAA 162 (194)
Q Consensus 83 mI~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~gv~v~~~~~~k~~I~i~GiDkq~Vgq~AA 162 (194)
||+||++||+++|+++|+|| ||.+ +|+.|.| +||||||+.++||+|+++++++| |+|+|+|+|||+||||||
T Consensus 74 mi~GVt~Gf~~~L~lvGvgy--rv~~--~g~~l~l--~LG~sh~i~~~Ip~~v~v~~~~~--t~I~i~G~dke~Vgq~AA 145 (175)
T TIGR03654 74 MVIGVSEGFEKKLEIVGVGY--RAQL--QGKKLNL--SLGYSHPVEYEIPEGITVEVPKP--TEIVVKGIDKQLVGQVAA 145 (175)
T ss_pred HhheeccCcEEEEEEEEEEE--EEEE--eCCeEEE--EecCceeEEEECCCCeEEEeCCC--CEEEEEECCHHHHHHHHH
Confidence 99999999999999999999 8999 6789999 99999999999999999999997 899999999999999999
Q ss_pred HHhcccc---cCCCcee
Q 029415 163 LINQKCH---VKNKDIR 176 (194)
Q Consensus 163 ~Ir~~~~---~Kgkd~R 176 (194)
+||++|+ |||||+|
T Consensus 146 ~Ir~~r~pepYKgkGi~ 162 (175)
T TIGR03654 146 EIRAFRKPEPYKGKGIR 162 (175)
T ss_pred HHhccCCCCCcCCCcEe
Confidence 9999996 8999887
No 8
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=100.00 E-value=1e-52 Score=344.10 Aligned_cols=169 Identities=28% Similarity=0.462 Sum_probs=156.3
Q ss_pred eeeeeeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEcccCccCCcEEEEEecCCChhhhhhHHHHHHHHhh
Q 029415 3 TILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQN 82 (194)
Q Consensus 3 ~~~~~~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli~N 82 (194)
+++++.+|.||++|+|+++++.|+|+||+|+|+++|++ .+++.++ ++.|.++.|.++++++|+|||+||||+|
T Consensus 2 s~ig~~~I~IP~~V~v~~~~~~v~vkGp~G~l~~~~~~-~v~i~~~------~~~i~v~~~~~~k~~~a~~gt~~s~I~N 74 (178)
T PRK05498 2 SRIGKKPIAIPAGVEVTINGNVVTVKGPKGELSRTLNP-DVTVKVE------DNEITVTRPDDSKKARALHGTTRALINN 74 (178)
T ss_pred CcccccceecCCCCEEEEECCEEEEECCCEEEEEEcCC-CeEEEEE------CCEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 67788999999999999999999999999999999976 7888742 4789999999999999999999999999
Q ss_pred heeeeccceEEEEEEEEEEecceeEEccCCCeEEEEcccCceeeEEEecCCCeEEEecCCCCcEEEEEecCHhHHHHHHH
Q 029415 83 LITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAA 162 (194)
Q Consensus 83 mI~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~gv~v~~~~~~k~~I~i~GiDkq~Vgq~AA 162 (194)
||+||++||+++|+++|+|| ||.+ +|+.|.| +||||||+.++||+|++|++++| |+|+|+|+|||+||||||
T Consensus 75 mi~GVt~Gf~~~L~lvGvgy--rv~~--~g~~l~l--~LG~sh~i~~~Ip~gv~v~~~~~--t~I~i~G~dke~Vg~~AA 146 (178)
T PRK05498 75 MVVGVTEGFEKKLEIVGVGY--RAQV--KGKKLNL--SLGYSHPVEYEIPEGITVEVPKP--TEIVVKGIDKQLVGQVAA 146 (178)
T ss_pred HhhhcCCCeEEEEEEEeEEE--EEEE--eCCeEEE--EecCCEEEEEECCCCeEEEeCCC--CEEEEEECCHHHHHHHHH
Confidence 99999999999999999999 8999 6789999 99999999999999999999987 899999999999999999
Q ss_pred HHhcccc---cCCCceeeeeceEEEeeee
Q 029415 163 LINQKCH---VKNKDIRKFLDGIYVSEKG 188 (194)
Q Consensus 163 ~Ir~~~~---~Kgkd~R~f~DGiyv~~k~ 188 (194)
+||++|+ |||||+| .+|.+|-.|+
T Consensus 147 ~Ir~~r~pe~YkgkGi~--~~~e~i~~K~ 173 (178)
T PRK05498 147 EIRSYRPPEPYKGKGIR--YAGEVVRRKE 173 (178)
T ss_pred HHhccCCCCCccCCcEe--ECCEEEEEec
Confidence 9999997 8999887 5666666554
No 9
>KOG3254 consensus Mitochondrial/chloroplast ribosomal protein L6 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-44 Score=292.62 Aligned_cols=165 Identities=22% Similarity=0.283 Sum_probs=145.9
Q ss_pred eeeeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEcccCccCCcEEEEEecCCChhhhhhHHHHHHHHhhhe
Q 029415 5 LSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLI 84 (194)
Q Consensus 5 ~~~~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli~NmI 84 (194)
+++..|..|++-.-+.++..++|+||+|+|++++|+ .+.++-+.+ ..+.+......++|++++||||+|||++||+
T Consensus 34 ~~~k~i~~~e~k~~~lege~l~vkGP~gel~l~~P~-~l~L~~dkk---~~g~~~~~k~~etkkqr~mwgt~R~l~~N~v 109 (211)
T KOG3254|consen 34 VGKKEIIVKENKQRDLEGEQLQVKGPHGELNLRFPN-YLNLSNDKK---KSGMDANIKKQETKKQRAMWGTFRALLANNV 109 (211)
T ss_pred ecceeEEeehhhccccccCceEeeCCcceeeccCCc-cccccchhh---hcceeeeecchhhHHHHHHHHHHHHHHhccc
Confidence 567788888888777889999999999999999999 677752221 2234444445678999999999999999999
Q ss_pred eeeccceEEEEEEEEEEecceeEEccCCCeEEEEcccCceeeEEEecCCCeEEEecCCCCcEEEEEecCHhHHHHHHHHH
Q 029415 85 TGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALI 164 (194)
Q Consensus 85 ~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~gv~v~~~~~~k~~I~i~GiDkq~Vgq~AA~I 164 (194)
.|||.||.+.|++||+|| ||++ +|+.|.+ +|||||++.+.||++|.|+++.| |.++++|+|||+|+||||.+
T Consensus 110 ~GVt~g~~k~l~lVGvGY--Ra~l--egk~l~l--klG~S~~v~l~iP~~v~Vk~p~p--tsl~~~G~dKq~V~qFAAkv 181 (211)
T KOG3254|consen 110 KGVTMGFLKILKLVGVGY--RASL--EGKFLHL--KLGYSHDVLLSIPTDVQVKNPTP--TSLVLRGIDKQKVTQFAAKV 181 (211)
T ss_pred hhhhhhhhheeeEEeeee--EEEe--cCceEEE--EeccccceeecCCCceEEecCCC--CEEEEecccHHHHHHHHHHH
Confidence 999999999999999999 9999 6999999 99999999999999999999998 99999999999999999999
Q ss_pred hcccc---cCCCceeeeeceEEEeeee
Q 029415 165 NQKCH---VKNKDIRKFLDGIYVSEKG 188 (194)
Q Consensus 165 r~~~~---~Kgkd~R~f~DGiyv~~k~ 188 (194)
|+|+| |||| |||++.+-
T Consensus 182 RsfkpPEPYKGK-------GIyv~dE~ 201 (211)
T KOG3254|consen 182 RSFKPPEPYKGK-------GIYVDDEK 201 (211)
T ss_pred hccCCCCCcCCC-------ceEeccce
Confidence 99986 9999 88888654
No 10
>KOG3255 consensus 60S ribosomal protein L9 [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.7e-29 Score=206.30 Aligned_cols=179 Identities=61% Similarity=0.988 Sum_probs=164.8
Q ss_pred CceeeeeeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEcccCccCCcEEEEEecCCChhhhhhHHHHHHHH
Q 029415 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHV 80 (194)
Q Consensus 1 m~~~~~~~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli 80 (194)
|+.++.++.+.||++|++++++..++|+||+|+|+++|.|+++++.+..+ +.+.+.+..|++.|+..|..-|..|++
T Consensus 1 mk~Ilsn~tv~iPe~v~it~k~~v~~v~gprgtl~~d~~hi~~~~~~~~~---~~~~ik~~~~~~~Rk~va~l~t~~s~i 77 (179)
T KOG3255|consen 1 MKTILSNQTVHIPENVDITLKGHVVIVKGPRGTLWRDFNHINVELSLLGK---KKKRLKIDKWWGTRKGVACLRTVVSHI 77 (179)
T ss_pred CceEEeceEEecCCCceEEEeeEEEEEeCCCcceeccccccchhhhhhcc---hhhhhhhhhhhccchhHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999998777764432 124688899999999999999999999
Q ss_pred hhheeeeccceEEEEEEEEEEecceeEEccCCCeEEEEcccCceeeEEEecCCCeEEEecCCCCcEEEEEecCHhHHHHH
Q 029415 81 QNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRS 160 (194)
Q Consensus 81 ~NmI~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~gv~v~~~~~~k~~I~i~GiDkq~Vgq~ 160 (194)
+||++||+.||.|+++.++.|||+...+.++++..++.||||.+.+..+++.+|+........+++|+++|+|.+.|+|.
T Consensus 78 en~i~gvt~~~i~k~~av~a~f~in~~~~~~~~s~~i~n~l~~k~~~~~~~~~Gv~~~~~~~~~~~i~~~~~~~~~vs~~ 157 (179)
T KOG3255|consen 78 ENCIKGVTIGFIYKMRAVYAHFPINTVIQENGKSEEIRNFLGEKLVRRVEMRPGVTIVRSSKVKDEIVLEGNDLELVSQS 157 (179)
T ss_pred HHHHhcchHHHHHHhhhHHhhccccceecCCCcchhhhhhhhhhccceEecCCCeEEeeehhcchhheecccchhhhhhH
Confidence 99999999999999999999999999998888899999999999999999999999998876679999999999999999
Q ss_pred HHHHhcccccCCCceeeeeceEEEeeeeee
Q 029415 161 AALINQKCHVKNKDIRKFLDGIYVSEKGTI 190 (194)
Q Consensus 161 AA~Ir~~~~~Kgkd~R~f~DGiyv~~k~~~ 190 (194)
||. ++.|..+++ +| ||+||+++
T Consensus 158 ~a~-~~~~~~~~~-----ld--yv~~k~~~ 179 (179)
T KOG3255|consen 158 AAL-QQICTVKNK-----LD--YVSEKGTI 179 (179)
T ss_pred hHh-hccceehhh-----cc--hhhhcccC
Confidence 888 999999877 88 99999863
No 11
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=99.78 E-value=5.1e-19 Score=125.23 Aligned_cols=74 Identities=41% Similarity=0.677 Sum_probs=67.1
Q ss_pred cCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEcccCccCCcEEEEEecCCChhhhh---hHHHHHHHHhhheeeec
Q 029415 12 IPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSA---AIRTALSHVQNLITGVT 88 (194)
Q Consensus 12 IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a---~~gt~rsli~NmI~GVt 88 (194)
||+||+|+++++.++++||+|+|+++||+ .+.+.+..+ ++.+.+..+.+++++++ +|||+|||++||++||+
T Consensus 1 IP~gV~v~~~~~~i~v~G~~g~l~~~~~~-~v~v~~~~~----~~~~~~~~~~~~~k~~~~~a~~gt~rsli~n~i~GV~ 75 (77)
T PF00347_consen 1 IPEGVKVTIKGNIITVKGPKGELSRPIPP-GVKVEIKVE----DNKITVSVLSGNKKQKAFAAMIGTYRSLINNMIKGVT 75 (77)
T ss_dssp SSTTCEEEEETTEEEEESSSSEEEEEETT-TEEEEEEEE----TTSEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCcEEEEECCCEeEEEECCC-CeeEEEEcC----CCceEEEECcccHhHhhhHHhhccccccccCceeEEC
Confidence 79999999999999999999999999999 677774432 57888888889999999 99999999999999999
Q ss_pred cc
Q 029415 89 KG 90 (194)
Q Consensus 89 ~G 90 (194)
+|
T Consensus 76 ~G 77 (77)
T PF00347_consen 76 EG 77 (77)
T ss_dssp TE
T ss_pred CC
Confidence 87
No 12
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=98.12 E-value=1.4e-06 Score=61.20 Aligned_cols=73 Identities=23% Similarity=0.237 Sum_probs=54.1
Q ss_pred EEecceeEEccCCCeEEEEcccCceeeEEEecCCCeEEEec--CCCCcEEEEEecCHhHHHHHHHHHhcccccCCCceee
Q 029415 100 AHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRS--DKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRK 177 (194)
Q Consensus 100 vGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~gv~v~~~--~~~k~~I~i~GiDkq~Vgq~AA~Ir~~~~~Kgkd~R~ 177 (194)
.|| ++++ +++.+.+ .|+++...+++|++|.+++. +...+...+++.|+++. +||.++.+|..-...++-
T Consensus 3 ~gV--~v~~--~~~~i~v---~G~~g~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~~--~~a~~gt~rsli~n~i~G 73 (77)
T PF00347_consen 3 EGV--KVTI--KGNIITV---KGPKGELSRPIPPGVKVEIKVEDNKITVSVLSGNKKQKA--FAAMIGTYRSLINNMIKG 73 (77)
T ss_dssp TTC--EEEE--ETTEEEE---ESSSSEEEEEETTTEEEEEEEETTSEEEEEEEESHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred CcE--EEEE--eCcEEEE---ECCCEeEEEECCCCeeEEEEcCCCceEEEECcccHhHhh--hHHhhccccccccCceeE
Confidence 456 7788 4555555 99999999999999999965 43236777899999999 999999999753333333
Q ss_pred eece
Q 029415 178 FLDG 181 (194)
Q Consensus 178 f~DG 181 (194)
+.+|
T Consensus 74 V~~G 77 (77)
T PF00347_consen 74 VTEG 77 (77)
T ss_dssp HHTE
T ss_pred ECCC
Confidence 3333
No 13
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=57.15 E-value=13 Score=30.40 Aligned_cols=21 Identities=43% Similarity=0.700 Sum_probs=10.5
Q ss_pred eEEcCCCcEEEEeCcEEEEEc
Q 029415 9 TMEIPEGVKVKINAKIIEVEG 29 (194)
Q Consensus 9 ~I~IP~~V~v~i~~~~v~vkG 29 (194)
.++||+||+++..+..|+++|
T Consensus 114 ~~~iP~gI~v~~~~~~I~i~G 134 (170)
T TIGR03653 114 RAKIPGGVKVKVKGEEVIVTG 134 (170)
T ss_pred EEECCCCeEEEecCCEEEEEe
Confidence 345566666654433444444
No 14
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=53.61 E-value=15 Score=30.34 Aligned_cols=30 Identities=37% Similarity=0.551 Sum_probs=22.6
Q ss_pred eeEEcCCCcEEEEeC-cEEEEEcCCcEEEEE
Q 029415 8 ETMEIPEGVKVKINA-KIIEVEGPRGKLSRN 37 (194)
Q Consensus 8 ~~I~IP~~V~v~i~~-~~v~vkGp~G~l~~~ 37 (194)
..++||+|+++++.+ ..|+|+|+.=++.=.
T Consensus 113 ~~~~ip~gi~v~v~~~t~I~v~GidKe~VGQ 143 (178)
T COG0097 113 VVIEIPEGITVEVPGPTEIVVEGIDKELVGQ 143 (178)
T ss_pred eEEECCCCeEEEecCCCEEEEEcCCHHHHhH
Confidence 457889999999988 669999986554433
No 15
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to those in other RNA binding proteins: a KH domain and an S1 domain. KH domains bind single-stranded RNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=52.79 E-value=35 Score=22.67 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=22.8
Q ss_pred CeEEEecCCCCcEEEEEecCHhHHHHHHHHH
Q 029415 134 GVTVLRSDKVKDELILDGNDIELVSRSAALI 164 (194)
Q Consensus 134 gv~v~~~~~~k~~I~i~GiDkq~Vgq~AA~I 164 (194)
|+++.+++. ..+.|+|.|++.+....+.|
T Consensus 32 g~~I~i~~~--g~v~I~G~~~~~v~~A~~~I 60 (61)
T cd02393 32 GVKIDIEDD--GTVYIAASDKEAAEKAKKMI 60 (61)
T ss_pred CCEEEeCCC--CEEEEEeCCHHHHHHHHHHh
Confidence 667777765 78999999999888776655
No 16
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=52.78 E-value=1e+02 Score=25.20 Aligned_cols=56 Identities=27% Similarity=0.326 Sum_probs=40.5
Q ss_pred eeEEccCCCeEEEEcccCceeeEEEecCCCeEEEecCCCCcEEEEEecC--Hh---HHHHHHHHHhccc
Q 029415 105 NASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGND--IE---LVSRSAALINQKC 168 (194)
Q Consensus 105 ra~~~~~g~~l~l~n~LG~Sh~i~~~iP~gv~v~~~~~~k~~I~i~GiD--kq---~Vgq~AA~Ir~~~ 168 (194)
.+++ +++.|.++.-+| .....+|..+.+...+ +.|.++-.+ ++ ..|.++|.|++..
T Consensus 16 ~v~i--~~~~v~vkGp~G---~l~~~~~~~v~i~~~~---~~i~v~~~~~~k~~~a~~gt~~slI~Nmi 76 (178)
T CHL00140 16 NVSI--DDQIIKVKGPKG---TLSRKIPDLITIEIQD---NSLFVSKKDESKKARALHGLYRTLINNMV 76 (178)
T ss_pred EEEE--ECCEEEEECCCE---EEEEECCCCeEEEEeC---CEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 3445 678899976666 5667888899998865 578887443 33 4799999999864
No 17
>PF12970 DUF3858: Domain of Unknown Function with PDB structure (DUF3858); InterPro: IPR024544 This domain of unknown function is structurally similar to part of neuropilin-2. The proteins it occurs in have not yet been functionally characterised.; PDB: 3KD4_A.
Probab=52.24 E-value=87 Score=24.21 Aligned_cols=34 Identities=32% Similarity=0.520 Sum_probs=23.9
Q ss_pred eeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecC
Q 029415 7 SETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKH 40 (194)
Q Consensus 7 ~~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~ 40 (194)
...|.+|+|-++......-.++.|-|++++.+..
T Consensus 40 tyti~~pegm~l~t~~~~K~I~N~~Gk~~isv~~ 73 (116)
T PF12970_consen 40 TYTIELPEGMKLVTPPMEKKIDNPVGKVSISVKP 73 (116)
T ss_dssp EEEEEE-TT-EE-S--S-EEEEETTEEEEEEEEE
T ss_pred EEEEEcCCCCeeecCccceeccCCcceEEEEEEe
Confidence 4578999999988777788999999999988765
No 18
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=51.93 E-value=14 Score=26.39 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=22.0
Q ss_pred CCCcEEEEeCcEEEEEcCC--------cEEEEEec
Q 029415 13 PEGVKVKINAKIIEVEGPR--------GKLSRNFK 39 (194)
Q Consensus 13 P~~V~v~i~~~~v~vkGp~--------G~l~~~~~ 39 (194)
|+.++|++.++.|+|+|-+ |+.++.|.
T Consensus 21 pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~ 55 (81)
T cd06479 21 PEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQ 55 (81)
T ss_pred HHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEE
Confidence 6789999999999999965 66666664
No 19
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=51.80 E-value=86 Score=25.47 Aligned_cols=56 Identities=23% Similarity=0.292 Sum_probs=40.0
Q ss_pred eeEEccCCCeEEEEcccCceeeEEEecCCCeEEEecCCCCcEEEEEecC--H---hHHHHHHHHHhccc
Q 029415 105 NASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGND--I---ELVSRSAALINQKC 168 (194)
Q Consensus 105 ra~~~~~g~~l~l~n~LG~Sh~i~~~iP~gv~v~~~~~~k~~I~i~GiD--k---q~Vgq~AA~Ir~~~ 168 (194)
.+++ +++.|.++.-+| .....+|.++.+...+ +.|.++-.+ + ...|-++|.|++..
T Consensus 15 ~v~~--~~~~v~v~Gp~G---~l~~~l~~~i~i~~~~---~~i~v~~~~~~kk~~a~~gt~~s~i~Nmi 75 (175)
T TIGR03654 15 EVTI--DGNVVTVKGPKG---ELSRTLHPGVTVKVED---GQLTVSRPNDSKEARALHGTTRALINNMV 75 (175)
T ss_pred EEEE--eCCEEEEEcCCe---EEEEEcCCCeEEEEEC---CEEEEEecCCCHHHHHHHHHHHHHHHHHh
Confidence 3445 578899987888 4456668999998866 578887444 2 36788888888854
No 20
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=47.07 E-value=21 Score=29.62 Aligned_cols=12 Identities=0% Similarity=0.122 Sum_probs=7.8
Q ss_pred HHHHHHHHHhcc
Q 029415 156 LVSRSAALINQK 167 (194)
Q Consensus 156 ~Vgq~AA~Ir~~ 167 (194)
..|-++|.|++.
T Consensus 67 l~Gt~rslI~NM 78 (189)
T PTZ00179 67 TINTALSHVRNM 78 (189)
T ss_pred HHHHHHHHHHHH
Confidence 456677777665
No 21
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=43.78 E-value=25 Score=29.19 Aligned_cols=13 Identities=8% Similarity=0.082 Sum_probs=8.5
Q ss_pred HHHHHHHHHhccc
Q 029415 156 LVSRSAALINQKC 168 (194)
Q Consensus 156 ~Vgq~AA~Ir~~~ 168 (194)
..|-++|.|++..
T Consensus 68 ~~Gt~rslI~NmI 80 (190)
T PTZ00027 68 CIRTVCSHIKNMM 80 (190)
T ss_pred HHHHHHHHHHHHh
Confidence 4577777777654
No 22
>PF00338 Ribosomal_S10: Ribosomal protein S10p/S20e; InterPro: IPR001848 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Evidence suggests that, in prokaryotes, the peptidyl transferase reaction is performed by the large subunit 23S rRNA, whereas proteins probably have a greater role in eukaryotic ribosomes. Most of the proteins lie close to, or on the surface of, the 30S subunit, arranged peripherally around the rRNA []. The small subunit ribosomal proteins can be categorised as primary binding proteins, which bind directly and independently to 16S rRNA; secondary binding proteins, which display no specific affinity for 16S rRNA, but its assembly is contingent upon the presence of one or more primary binding proteins; and tertiary binding proteins, which require the presence of one or more secondary binding proteins and sometimes other tertiary binding proteins. The small ribosomal subunit protein S10 consists of about 100 amino acid residues. In Escherichia coli, S10 is involved in binding tRNA to the ribosome, and also operates as a transcriptional elongation factor []. Experimental evidence [] has revealed that S10 has virtually no groups exposed on the ribosomal surface, and is one of the "split proteins": these are a discrete group that are selectively removed from 30S subunits under low salt conditions and are required for the formation of activated 30S reconstitution intermediate (RI*) particles. S10 belongs to a family of proteins [] that includes: bacteria S10; algal chloroplast S10; cyanelle S10; archaebacterial S10; Marchantia polymorpha and Prototheca wickerhamii mitochondrial S10; Arabidopsis thaliana mitochondrial S10 (nuclear encoded); vertebrate S20; plant S20; and yeast URP2.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1S1H_J 3U5G_U 3O30_N 3O2Z_N 3IZB_J 3U5C_U 3R2C_J 3R2D_J 2ZKQ_j 2XQD_J ....
Probab=43.62 E-value=51 Score=23.66 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=26.7
Q ss_pred EEEEEecCHhHHHHHHHHHhcccccCCCcee
Q 029415 146 ELILDGNDIELVSRSAALINQKCHVKNKDIR 176 (194)
Q Consensus 146 ~I~i~GiDkq~Vgq~AA~Ir~~~~~Kgkd~R 176 (194)
+|.|+|-|...|..+|..|.++++..|-++.
T Consensus 2 ~I~l~s~d~~~l~~~~~~i~~~~~~~~~~~~ 32 (97)
T PF00338_consen 2 RIKLKSYDKKLLESYVKFIHKLAKNLGIKVS 32 (97)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHCTSSCEE
T ss_pred EEEEEECCHHHHHHHHHHHHHHHHHhCCccc
Confidence 5889999999999999999999876666554
No 23
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=43.38 E-value=26 Score=28.83 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=12.6
Q ss_pred cEEEEEecC--H---hHHHHHHHHHhcc
Q 029415 145 DELILDGND--I---ELVSRSAALINQK 167 (194)
Q Consensus 145 ~~I~i~GiD--k---q~Vgq~AA~Ir~~ 167 (194)
++|.++-.+ + ...|.+.|.|++.
T Consensus 50 ~~i~v~~~~~~kk~ra~~gt~rslI~Nm 77 (180)
T PRK05518 50 GKVVIETEFARKKTKAMVGTFASHIKNM 77 (180)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHhh
Confidence 455555333 2 2456677777664
No 24
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=41.02 E-value=1.8e+02 Score=23.58 Aligned_cols=52 Identities=23% Similarity=0.291 Sum_probs=37.2
Q ss_pred CCCeEEEEcccCceeeEEEecCCCeEEEecCCCCcEEEEEe--cCHh---HHHHHHHHHhccc
Q 029415 111 ADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDG--NDIE---LVSRSAALINQKC 168 (194)
Q Consensus 111 ~g~~l~l~n~LG~Sh~i~~~iP~gv~v~~~~~~k~~I~i~G--iDkq---~Vgq~AA~Ir~~~ 168 (194)
+++.|.++.-+|- ...++|.++.+...+ +.|.++- .++. .+|-++|.|++..
T Consensus 20 ~~~~v~vkGp~G~---l~~~~~~~v~i~~~~---~~i~v~~~~~~k~~~a~~gt~~s~I~Nmi 76 (178)
T PRK05498 20 NGNVVTVKGPKGE---LSRTLNPDVTVKVED---NEITVTRPDDSKKARALHGTTRALINNMV 76 (178)
T ss_pred ECCEEEEECCCEE---EEEEcCCCeEEEEEC---CEEEEEcCCCCHHHHHHHHHHHHHHHHHh
Confidence 5788899888883 345668899998865 5687763 3344 6788888888854
No 25
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=40.67 E-value=24 Score=22.68 Aligned_cols=20 Identities=25% Similarity=0.625 Sum_probs=16.8
Q ss_pred CCCcEEEEeCcEEEEEcCCc
Q 029415 13 PEGVKVKINAKIIEVEGPRG 32 (194)
Q Consensus 13 P~~V~v~i~~~~v~vkGp~G 32 (194)
|+.+.|.+.++.+.|+|...
T Consensus 19 ~~~i~v~~~~~~l~v~~~~~ 38 (80)
T cd00298 19 KEDIKVEVEDNVLTISGKRE 38 (80)
T ss_pred HHHeEEEEECCEEEEEEEEc
Confidence 47899999999999998654
No 26
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=40.09 E-value=53 Score=22.11 Aligned_cols=28 Identities=11% Similarity=0.077 Sum_probs=23.0
Q ss_pred CCCcEEEEeCcEEEEEcCCcEEEEEecC
Q 029415 13 PEGVKVKINAKIIEVEGPRGKLSRNFKH 40 (194)
Q Consensus 13 P~~V~v~i~~~~v~vkGp~G~l~~~~~~ 40 (194)
+++++++++++.+++.|+.=.++.+|++
T Consensus 19 ~~~v~v~~~~~~l~i~~~~~~~~~~l~~ 46 (78)
T cd06469 19 TSKVDIFCSDLYLKVNFPPYLFELDLAA 46 (78)
T ss_pred cccceEEEecCEEEEcCCCEEEEEeCcc
Confidence 5788999999999999966667777776
No 27
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=37.55 E-value=1.4e+02 Score=23.28 Aligned_cols=76 Identities=13% Similarity=-0.005 Sum_probs=39.0
Q ss_pred EEecceeEEccCCCeEEEEcccCceeeEEEecCCCeEEEecCCCC-cEEEEEecCHhHHHHHHHHHhcccc-cCCCceee
Q 029415 100 AHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCH-VKNKDIRK 177 (194)
Q Consensus 100 vGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~gv~v~~~~~~k-~~I~i~GiDkq~Vgq~AA~Ir~~~~-~Kgkd~R~ 177 (194)
+|| ++..| ++-.+.|...-|-.+-+.-+=|.--+=.+.++.| ++|+|+-.|.+.+-+..|+..++-+ |||++=.-
T Consensus 22 LGf--kll~E-Ena~a~lg~~~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~~~EIe~LLar~~~~~~l~kg~~gyA 98 (125)
T PF14506_consen 22 LGF--KLLSE-ENALAILGDQQKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPNPKEIEALLARGAQYDRLYKGKNGYA 98 (125)
T ss_dssp T----EEEEE-ETTEEEEE-TT--EEEEEEE--TTT-B--SSS-SEEEEEEEESSHHHHHHHHHC-S--SEEEE-SSSEE
T ss_pred cCc--EEeec-cccEEEecCCCCceEEEEecCCccccccccCcceeeEEEEEcCCHHHHHHHHhcccccceeEEcCCceE
Confidence 366 66665 3445555322222222333334333334556544 7999999999999999999988765 78886554
Q ss_pred e
Q 029415 178 F 178 (194)
Q Consensus 178 f 178 (194)
|
T Consensus 99 f 99 (125)
T PF14506_consen 99 F 99 (125)
T ss_dssp E
T ss_pred E
Confidence 4
No 28
>PRK14424 acylphosphatase; Provisional
Probab=37.54 E-value=12 Score=27.51 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=34.6
Q ss_pred eEEEEEEEEEEecceeEEccCCCeEEEEcccCceeeEEEecCCC-eEEEecCCCCcEEEEEecCHhHHHHHHHHHhcc
Q 029415 91 YRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDG-VTVLRSDKVKDELILDGNDIELVSRSAALINQK 167 (194)
Q Consensus 91 f~~~L~lvGvGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~g-v~v~~~~~~k~~I~i~GiDkq~Vgq~AA~Ir~~ 167 (194)
+...=++-|||| |..+..... .||-+--+. .+|+| | +|.++|.+ +.|-+|.+.|++.
T Consensus 11 ~~v~G~VQGVGF--R~~v~~~A~------~~gl~G~V~-N~~dG~V----------ei~~qG~~-~~v~~f~~~l~~g 68 (94)
T PRK14424 11 VRVRGVVQGVGF--RHATVREAH------ALGLRGWVA-NLEDGTV----------EAMIQGPA-AQIDRMLAWLRHG 68 (94)
T ss_pred EEEEEeecCCch--HHHHHHHHH------HcCCeEEEE-ECCCCCE----------EEEEEECH-HHHHHHHHHHHhC
Confidence 333445678999 666632222 344444443 66666 3 57777766 4599999998753
No 29
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=36.67 E-value=22 Score=25.41 Aligned_cols=19 Identities=16% Similarity=0.445 Sum_probs=15.5
Q ss_pred CCCcEEEEeCcEEEEEcCC
Q 029415 13 PEGVKVKINAKIIEVEGPR 31 (194)
Q Consensus 13 P~~V~v~i~~~~v~vkGp~ 31 (194)
|+.++|++.++.++|+|-+
T Consensus 20 ~edI~V~v~~~~L~I~ge~ 38 (83)
T cd06477 20 PEDIIIQVFEGWLLIKGQH 38 (83)
T ss_pred HHHeEEEEECCEEEEEEEE
Confidence 5788888888888888853
No 30
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=35.30 E-value=24 Score=25.81 Aligned_cols=19 Identities=37% Similarity=0.625 Sum_probs=16.5
Q ss_pred CCCcEEEEeCcEEEEEcCC
Q 029415 13 PEGVKVKINAKIIEVEGPR 31 (194)
Q Consensus 13 P~~V~v~i~~~~v~vkGp~ 31 (194)
|+.++|++.++.|+|+|..
T Consensus 28 pEDL~Vkv~~~~L~V~Gkh 46 (91)
T cd06480 28 PEELTVKTKDGFVEVSGKH 46 (91)
T ss_pred HHHcEEEEECCEEEEEEEE
Confidence 7889999999999998854
No 31
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=34.88 E-value=30 Score=24.46 Aligned_cols=18 Identities=33% Similarity=0.689 Sum_probs=15.1
Q ss_pred CCCcEEEEeCcEEEEEcC
Q 029415 13 PEGVKVKINAKIIEVEGP 30 (194)
Q Consensus 13 P~~V~v~i~~~~v~vkGp 30 (194)
|++++|++.++.++|+|-
T Consensus 20 ~edI~V~v~~~~L~I~g~ 37 (83)
T cd06478 20 PEELSVKVLGDFVEIHGK 37 (83)
T ss_pred HHHeEEEEECCEEEEEEE
Confidence 578889998899998884
No 32
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=34.65 E-value=25 Score=25.00 Aligned_cols=18 Identities=44% Similarity=0.763 Sum_probs=15.8
Q ss_pred CCCcEEEEeCcEEEEEcC
Q 029415 13 PEGVKVKINAKIIEVEGP 30 (194)
Q Consensus 13 P~~V~v~i~~~~v~vkGp 30 (194)
|+.++|++.++.++|+|-
T Consensus 20 ~edi~V~v~~~~L~I~g~ 37 (84)
T cd06498 20 PEELKVKVLGDFIEIHGK 37 (84)
T ss_pred HHHeEEEEECCEEEEEEE
Confidence 678999999999999984
No 33
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=34.43 E-value=1.4e+02 Score=21.13 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=17.7
Q ss_pred CCCcEEEEeCcEEEEEcCCc
Q 029415 13 PEGVKVKINAKIIEVEGPRG 32 (194)
Q Consensus 13 P~~V~v~i~~~~v~vkGp~G 32 (194)
|++++|++.++.|+|+|-+.
T Consensus 20 ~edi~I~~~~~~L~I~g~~~ 39 (102)
T PF00011_consen 20 KEDIKIKVDDNKLVISGKRK 39 (102)
T ss_dssp GGGEEEEEETTEEEEEEEEE
T ss_pred hHHEEEEEecCccceeceee
Confidence 46899999999999999877
No 34
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=34.15 E-value=26 Score=24.94 Aligned_cols=19 Identities=21% Similarity=0.518 Sum_probs=15.8
Q ss_pred CCCcEEEEeCcEEEEEcCC
Q 029415 13 PEGVKVKINAKIIEVEGPR 31 (194)
Q Consensus 13 P~~V~v~i~~~~v~vkGp~ 31 (194)
|+.++|++.++.++|+|-+
T Consensus 20 ~edi~V~v~~~~L~I~g~~ 38 (83)
T cd06476 20 PDEITVRTVDNLLEVSARH 38 (83)
T ss_pred HHHeEEEEECCEEEEEEEE
Confidence 5788999999999998853
No 35
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=31.33 E-value=31 Score=24.62 Aligned_cols=19 Identities=32% Similarity=0.635 Sum_probs=15.8
Q ss_pred CCCcEEEEeCcEEEEEcCC
Q 029415 13 PEGVKVKINAKIIEVEGPR 31 (194)
Q Consensus 13 P~~V~v~i~~~~v~vkGp~ 31 (194)
|+.++|++.++.++|+|-+
T Consensus 23 ~edi~V~v~~~~L~I~g~~ 41 (86)
T cd06497 23 PEDLTVKVLDDYVEIHGKH 41 (86)
T ss_pred HHHeEEEEECCEEEEEEEE
Confidence 5788999999999999853
No 36
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=30.12 E-value=36 Score=24.30 Aligned_cols=19 Identities=32% Similarity=0.712 Sum_probs=16.1
Q ss_pred CCCcEEEEeCcEEEEEcCC
Q 029415 13 PEGVKVKINAKIIEVEGPR 31 (194)
Q Consensus 13 P~~V~v~i~~~~v~vkGp~ 31 (194)
|+.++|++.++.++|+|-.
T Consensus 20 ~edI~V~v~~~~L~I~g~~ 38 (87)
T cd06481 20 PEDLSVRVDGRKLVVTGKR 38 (87)
T ss_pred hHHeEEEEECCEEEEEEEE
Confidence 6789999999999998853
No 37
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=30.09 E-value=26 Score=26.70 Aligned_cols=14 Identities=43% Similarity=0.662 Sum_probs=11.9
Q ss_pred eeeeceEEEeeeee
Q 029415 176 RKFLDGIYVSEKGT 189 (194)
Q Consensus 176 R~f~DGiyv~~k~~ 189 (194)
-+|.||.|++|.+-
T Consensus 52 l~F~dG~W~~e~~~ 65 (108)
T cd07429 52 LVFEDGRWISESGG 65 (108)
T ss_pred EEeeCCEEecCCCC
Confidence 46999999999874
No 38
>PRK14434 acylphosphatase; Provisional
Probab=29.95 E-value=23 Score=25.85 Aligned_cols=55 Identities=22% Similarity=0.198 Sum_probs=34.1
Q ss_pred EEEEEEEecceeEEccCCCeEE-EEcccCceeeEEEecCCC-eEEEecCCCCcEEEEEecCHhHHHHHHHHHhccc
Q 029415 95 MRFVYAHFPINASIANADKSIE-IRNFLGEKKVRRVEMLDG-VTVLRSDKVKDELILDGNDIELVSRSAALINQKC 168 (194)
Q Consensus 95 L~lvGvGypira~~~~~g~~l~-l~n~LG~Sh~i~~~iP~g-v~v~~~~~~k~~I~i~GiDkq~Vgq~AA~Ir~~~ 168 (194)
=++-|||| |..+....+.+- | -||- ...++| | +|.++|.+.+.|-+|.+.|++-.
T Consensus 10 G~VQGVGF--R~fv~~~A~~lg~l---~G~V----~N~~dGsV----------ei~~qG~~~~~l~~f~~~l~~g~ 66 (92)
T PRK14434 10 GRVQGVGF--RYSVYSLALEIGDI---YGRV----WNNDDGTV----------EILAQSDDSAKLAKFIQEIRKGP 66 (92)
T ss_pred EeecceeE--hHHHHHHHHHcCCc---EEEE----EECCCCCE----------EEEEEcCCHHHHHHHHHHHhcCC
Confidence 35678999 777743333444 4 2221 233344 3 57777877678999999988744
No 39
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=29.43 E-value=40 Score=29.92 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=28.8
Q ss_pred cCceeeEEEecCCCeEEEecCCCCcEEEEEecCHhHHHH
Q 029415 121 LGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSR 159 (194)
Q Consensus 121 LG~Sh~i~~~iP~gv~v~~~~~~k~~I~i~GiDkq~Vgq 159 (194)
=.|||.+.-.+|....+ ++.| ..++++|++.=+-++
T Consensus 167 Pvysh~~yD~vpd~~~v-~~~p--dIlI~EG~nvLq~~~ 202 (283)
T COG1072 167 PVYSHLIYDPVPDAFQV-VPQP--DILIVEGNNVLQDGE 202 (283)
T ss_pred ccccccccccCCCceee-cCCC--CEEEEechhhhcCCC
Confidence 68999999999988877 5555 799999998654443
No 40
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=29.18 E-value=36 Score=23.73 Aligned_cols=20 Identities=40% Similarity=0.635 Sum_probs=16.7
Q ss_pred CCCcEEEEeCcEEEEEcCCc
Q 029415 13 PEGVKVKINAKIIEVEGPRG 32 (194)
Q Consensus 13 P~~V~v~i~~~~v~vkGp~G 32 (194)
|+.++|++.++.++|+|.+.
T Consensus 20 ~edI~v~v~~~~L~I~g~~~ 39 (83)
T cd06526 20 PEELKVKVSDNKLVVEGKHE 39 (83)
T ss_pred HHHcEEEEECCEEEEEEEEe
Confidence 57889999999999998743
No 41
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=28.99 E-value=61 Score=23.00 Aligned_cols=19 Identities=11% Similarity=0.473 Sum_probs=16.3
Q ss_pred CCCcEEEEeCcEEEEEcCC
Q 029415 13 PEGVKVKINAKIIEVEGPR 31 (194)
Q Consensus 13 P~~V~v~i~~~~v~vkGp~ 31 (194)
|++++|++.++.++|+|.+
T Consensus 24 kedi~v~~~~~~L~I~g~~ 42 (90)
T cd06470 24 EDDLEIEVENNQLTVTGKK 42 (90)
T ss_pred HHHeEEEEECCEEEEEEEE
Confidence 4688999999999999863
No 42
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=28.67 E-value=37 Score=24.55 Aligned_cols=18 Identities=33% Similarity=0.580 Sum_probs=14.4
Q ss_pred CCCcEEEEeCcEEEEEcC
Q 029415 13 PEGVKVKINAKIIEVEGP 30 (194)
Q Consensus 13 P~~V~v~i~~~~v~vkGp 30 (194)
|+.++|++.++.++|+|-
T Consensus 21 kedI~V~v~~~~L~I~ge 38 (87)
T cd06482 21 PDQVKVKVKDGKVQVSAE 38 (87)
T ss_pred HHHeEEEEECCEEEEEEE
Confidence 467888888888888884
No 43
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=25.87 E-value=47 Score=23.65 Aligned_cols=19 Identities=32% Similarity=0.620 Sum_probs=14.7
Q ss_pred CCCcEEEEeCcEEEEEcCC
Q 029415 13 PEGVKVKINAKIIEVEGPR 31 (194)
Q Consensus 13 P~~V~v~i~~~~v~vkGp~ 31 (194)
|++++|++.++.++|+|-+
T Consensus 23 ~edi~V~v~~~~L~I~g~~ 41 (86)
T cd06475 23 PEELVVKTKDGVVEITGKH 41 (86)
T ss_pred HHHEEEEEECCEEEEEEEE
Confidence 5678888888888888753
No 44
>PF14287 DUF4368: Domain of unknown function (DUF4368)
Probab=25.63 E-value=40 Score=23.54 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=28.4
Q ss_pred CHhHHHHHHHHHhcccccCCCce---eeeeceEEEeeee
Q 029415 153 DIELVSRSAALINQKCHVKNKDI---RKFLDGIYVSEKG 188 (194)
Q Consensus 153 Dkq~Vgq~AA~Ir~~~~~Kgkd~---R~f~DGiyv~~k~ 188 (194)
+.+.+.+|.+.||+++-+..-++ +.|.|=|+|.+..
T Consensus 9 ~~~d~~~Fi~~i~kYt~i~ELt~~il~elIdkI~V~e~~ 47 (71)
T PF14287_consen 9 KSEDVDKFIELIRKYTDITELTPEILNELIDKIVVHEPE 47 (71)
T ss_pred HHhhHHHHHHHHHHhCChhhCCHHHHHHHHHeEEEeccc
Confidence 35668889999999987766664 7899999998865
No 45
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has been shown to bind RNA and to associate with both soluble and membrane-bound polyribosomes as a mRNP component. Bicaudal-C is a RNA-binding molecule believed to function in embryonic development at the post-transcriptional level. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=24.73 E-value=1.5e+02 Score=19.05 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=14.2
Q ss_pred cEEEEEecCHhHHHHHHHHH
Q 029415 145 DELILDGNDIELVSRSAALI 164 (194)
Q Consensus 145 ~~I~i~GiDkq~Vgq~AA~I 164 (194)
+.+.|+|. .+.|-...+.|
T Consensus 43 ~~v~I~G~-~~~v~~A~~~i 61 (62)
T cd02394 43 DTITITGP-KENVEKAKEEI 61 (62)
T ss_pred CEEEEEcC-HHHHHHHHHHh
Confidence 78999999 66676665554
No 46
>PRK14421 acylphosphatase; Provisional
Probab=23.80 E-value=23 Score=26.30 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=33.0
Q ss_pred eEEEEEEEEEEecceeEEccCCCeEEEEcccCceeeEEEecCCC-eEEEecCCCCcEEEEEecCHhHHHHHHHHHhc
Q 029415 91 YRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDG-VTVLRSDKVKDELILDGNDIELVSRSAALINQ 166 (194)
Q Consensus 91 f~~~L~lvGvGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~g-v~v~~~~~~k~~I~i~GiDkq~Vgq~AA~Ir~ 166 (194)
+...=++.|||| |..+......+-| +--+ -.+++| | +|.++|.+ +.|.+|.+.|++
T Consensus 8 ~~v~G~VQGVGF--R~fv~~~A~~lgL------~G~V-~N~~dG~V----------ei~~~G~~-~~i~~f~~~l~~ 64 (99)
T PRK14421 8 VTIRGRVQGVGY--RAWVARTAEALGL------EGWV-RNRRDGSV----------EALFAGPA-DAVAEMIARCRR 64 (99)
T ss_pred EEEEEeEcCccc--hHHHHHHHHHhCC------EEEE-EECCCCEE----------EEEEeCCH-HHHHHHHHHHHh
Confidence 344446778999 7777433333333 3222 345666 4 45566644 558999988875
No 47
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=23.47 E-value=2.2e+02 Score=21.51 Aligned_cols=36 Identities=17% Similarity=0.363 Sum_probs=25.8
Q ss_pred eeeEEcCCCcEEEEeCc-----EEEEEcCCcEEEEEecCCcEEEE
Q 029415 7 SETMEIPEGVKVKINAK-----IIEVEGPRGKLSRNFKHLNLDFH 46 (194)
Q Consensus 7 ~~~I~IP~~V~v~i~~~-----~v~vkGp~G~l~~~~~~~~i~i~ 46 (194)
...+.||+|.+|.++.. .+.| .|+|.++-.. ++++.
T Consensus 12 g~~V~I~~g~~v~lD~~~~~l~~l~I---~G~L~f~~~~-~~~L~ 52 (125)
T PF10162_consen 12 GDNVVIPAGQTVLLDVSTPKLGSLII---GGTLIFDDDR-DITLR 52 (125)
T ss_pred CCEEEECCCCEEEEcCCChheeEEEE---EEEEEEccCC-CCEEE
Confidence 45688999999999875 5667 7888887633 33443
No 48
>COG0051 RpsJ Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]
Probab=23.19 E-value=89 Score=23.65 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=27.8
Q ss_pred CcEEEEEecCHhHHHHHHHHHhcccccCCCcee
Q 029415 144 KDELILDGNDIELVSRSAALINQKCHVKNKDIR 176 (194)
Q Consensus 144 k~~I~i~GiDkq~Vgq~AA~Ir~~~~~Kgkd~R 176 (194)
|-+|-|+|-|-..+-++|..|....+..|-+++
T Consensus 5 kirI~L~s~d~~~LD~~~~~Ive~akrtg~~v~ 37 (104)
T COG0051 5 KIRIRLKSFDHRLLDQVCREIVETAKRTGADVK 37 (104)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHHhCCeee
Confidence 368999999999999999999998876665543
No 49
>PF05137 PilN: Fimbrial assembly protein (PilN); InterPro: IPR007813 PilN is a plasmid-encoded, lipoprotein which locates to the outer membrane of bacteria and are part of a thin pilus required only for liquid mating [].
Probab=23.09 E-value=1.6e+02 Score=19.63 Aligned_cols=40 Identities=15% Similarity=0.110 Sum_probs=28.2
Q ss_pred EecCCCeEEEecCCCCcEEEEEec--CHhHHHHHHHHHhccc
Q 029415 129 VEMLDGVTVLRSDKVKDELILDGN--DIELVSRSAALINQKC 168 (194)
Q Consensus 129 ~~iP~gv~v~~~~~~k~~I~i~Gi--Dkq~Vgq~AA~Ir~~~ 168 (194)
-.+|+|+.++--....+.+.|+|. |.+.|.+|..++++.-
T Consensus 8 ~~~P~~v~l~~l~~~~~~l~i~G~a~~~~~v~~f~~~L~~~~ 49 (78)
T PF05137_consen 8 RALPEGVWLTSLSINGNTLSISGYADSYQSVAAFLRNLEQSP 49 (78)
T ss_pred hhCCCCEEEEEEEEeCCEEEEEEEECCHHHHHHHHHHHhhCC
Confidence 357999988875432368888886 5777777777777653
No 50
>PRK14433 acylphosphatase; Provisional
Probab=23.07 E-value=25 Score=25.29 Aligned_cols=52 Identities=17% Similarity=0.318 Sum_probs=31.6
Q ss_pred EEEEEEecceeEEccCCCeEEEEcccCceeeEEEecCCC-eEEEecCCCCcEEEEEecCHhHHHHHHHHHhcc
Q 029415 96 RFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDG-VTVLRSDKVKDELILDGNDIELVSRSAALINQK 167 (194)
Q Consensus 96 ~lvGvGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~g-v~v~~~~~~k~~I~i~GiDkq~Vgq~AA~Ir~~ 167 (194)
++.|||| |..+...-..+.| +--+ -.+|+| | +|.++|.+ +.|-+|...|++.
T Consensus 10 ~VQGVGF--R~~v~~~A~~~~l------~G~V-~N~~dG~V----------ei~~~G~~-~~i~~f~~~l~~g 62 (87)
T PRK14433 10 RVQGVGY--RAFVQKKARELGL------SGYA-ENLSDGRV----------EVVAEGPK-EALERLLHWLRRG 62 (87)
T ss_pred eeeCcCc--hHHHHHHHHHcCC------EEEE-EECCCCCE----------EEEEEECH-HHHHHHHHHHhhC
Confidence 5678999 6776432333333 3222 345555 3 56777766 4788998888743
No 51
>PRK14440 acylphosphatase; Provisional
Probab=22.90 E-value=24 Score=25.56 Aligned_cols=53 Identities=21% Similarity=0.208 Sum_probs=32.1
Q ss_pred EEEEEEEecceeEEccCCCeEEEEcccCceeeEEEecCCCeEEEecCCCCcEEEEEecCHhHHHHHHHHHhc
Q 029415 95 MRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQ 166 (194)
Q Consensus 95 L~lvGvGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~gv~v~~~~~~k~~I~i~GiDkq~Vgq~AA~Ir~ 166 (194)
=++.|||| |..+......+-| -|| ...+++| .=+|.++|.+ +.|-+|.+.|++
T Consensus 11 G~VQGVGF--R~~v~~~A~~~gl---~G~----V~N~~dG---------~Vei~~~G~~-~~v~~f~~~l~~ 63 (90)
T PRK14440 11 GLVQGVGF--RKFVQIHAIRLGI---KGY----AKNLPDG---------SVEVVAEGYE-EALSKLLERIKQ 63 (90)
T ss_pred EeEeccCc--hHHHHHHHHHcCC---EEE----EEECCCC---------CEEEEEEcCH-HHHHHHHHHHhh
Confidence 35678999 6776433334444 222 1333444 0267788866 779999999885
No 52
>PRK14446 acylphosphatase; Provisional
Probab=21.89 E-value=57 Score=23.61 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=30.0
Q ss_pred EEEEEEecceeEEccCCCeEEEEcccCceeeEEEecCCC-eEEEecCCCCcEEEEEecCHhHHHHHHHHHhc
Q 029415 96 RFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDG-VTVLRSDKVKDELILDGNDIELVSRSAALINQ 166 (194)
Q Consensus 96 ~lvGvGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~g-v~v~~~~~~k~~I~i~GiDkq~Vgq~AA~Ir~ 166 (194)
++-|||| |..+...-+.+-| -|| .-..|+| | +|.++| |.+.+.+|.+.+++
T Consensus 11 ~VQGVGF--R~fv~~~A~~lgl---~G~----V~N~~dGsV----------ei~~qG-~~~~l~~f~~~l~~ 62 (88)
T PRK14446 11 VVQGVWY--RASTRERAVALGL---VGH----ARNQADGSV----------EVVAAG-SAAALEALEAWLWQ 62 (88)
T ss_pred ecCCeeE--hHHHHHHHeeCCe---EEE----EEECCCCCE----------EEEEEe-CHHHHHHHHHHHhh
Confidence 4668999 6777432333333 121 1233444 3 566777 55689999998884
No 53
>PRK00596 rpsJ 30S ribosomal protein S10; Reviewed
Probab=21.29 E-value=1.3e+02 Score=22.35 Aligned_cols=27 Identities=22% Similarity=0.181 Sum_probs=23.4
Q ss_pred cEEEEEecCHhHHHHHHHHHhcccccC
Q 029415 145 DELILDGNDIELVSRSAALINQKCHVK 171 (194)
Q Consensus 145 ~~I~i~GiDkq~Vgq~AA~Ir~~~~~K 171 (194)
-+|.|+|.|...|-++|..|....+..
T Consensus 6 irI~l~S~d~~~L~~~~~~i~~~a~~~ 32 (102)
T PRK00596 6 IRIRLKAFDHRLLDQSAKKIVETAKRT 32 (102)
T ss_pred EEEEEEECCHHHHHHHHHHHHHHHHHc
Confidence 479999999999999999999876543
No 54
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=21.21 E-value=1.4e+02 Score=24.44 Aligned_cols=47 Identities=36% Similarity=0.492 Sum_probs=33.4
Q ss_pred cCCCcEEEEeCcEEEEEcCC-------cEEEEEecCC-----c-----EEEEEcccCccCCcEEEEEec
Q 029415 12 IPEGVKVKINAKIIEVEGPR-------GKLSRNFKHL-----N-----LDFHLMTDGETGKRKLKIDAW 63 (194)
Q Consensus 12 IP~~V~v~i~~~~v~vkGp~-------G~l~~~~~~~-----~-----i~i~~~~~~~~~~~~l~v~~~ 63 (194)
-|+.++|++.++.|.|+|.. |.+++.|..- . |.-.+. .++.|+|+..
T Consensus 84 ~PeEl~Vk~~~~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS-----~dGvLtI~ap 147 (173)
T KOG3591|consen 84 KPEELKVKTDDNTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLS-----SDGVLTIEAP 147 (173)
T ss_pred cccceEEEeCCCEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeC-----CCceEEEEcc
Confidence 59999999999999999865 7777777641 1 222333 3588888754
No 55
>PRK13781 paaB phenylacetate-CoA oxygenase subunit PaaB; Provisional
Probab=21.11 E-value=33 Score=25.58 Aligned_cols=15 Identities=13% Similarity=-0.051 Sum_probs=13.3
Q ss_pred CceeeEEEecCCCeE
Q 029415 122 GEKKVRRVEMLDGVT 136 (194)
Q Consensus 122 G~Sh~i~~~iP~gv~ 136 (194)
=|.||..|.+|++|.
T Consensus 79 ~YRh~tfy~~p~~v~ 93 (95)
T PRK13781 79 VYRHPTFYTLPDEVG 93 (95)
T ss_pred cccCcccccCccccC
Confidence 489999999999984
No 56
>PRK14448 acylphosphatase; Provisional
Probab=20.88 E-value=24 Score=25.57 Aligned_cols=53 Identities=19% Similarity=0.147 Sum_probs=31.4
Q ss_pred EEEEEEEEecceeEEccCCCeEEEEcccCceeeEEEecCCC-eEEEecCCCCcEEEEEecCHhHHHHHHHHHhc
Q 029415 94 KMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDG-VTVLRSDKVKDELILDGNDIELVSRSAALINQ 166 (194)
Q Consensus 94 ~L~lvGvGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~g-v~v~~~~~~k~~I~i~GiDkq~Vgq~AA~Ir~ 166 (194)
.=++-|||| |..+......+-| -||- -.+|+| | +|.++|.+ +.|-+|.+.|++
T Consensus 9 ~G~VQGVGF--R~~v~~~A~~lgl---~G~V----~N~~dG~V----------ei~~~G~~-~~v~~f~~~l~~ 62 (90)
T PRK14448 9 YGHVQGVGF--RYFTWQEATKIGI---KGYV----KNRPDGSV----------EVVAVGSD-AQIAAFRDWLQH 62 (90)
T ss_pred EEeecCcch--HHHHHHHHHHhCC---EEEE----EECCCCCE----------EEEEEeCH-HHHHHHHHHHHh
Confidence 335678999 6777433333444 2322 334444 3 56777755 559999888875
No 57
>TIGR01049 rpsJ_bact ribosomal protein S10, bacterial/organelle. This model describes bacterial 30S ribosomal protein S10. In species that have a transcription antitermination complex, or N utilization substance, with NusA, NusB, NusG, and NusE, this ribosomal protein is responsible for NusE activity. Included in the family are one member each from Saccharomyces cerevisiae and Schizosaccharomyces pombe. These proteins lack an N-terminal mitochondrial transit peptide but contain additional sequence C-terminal to the ribosomal S10 protein region.
Probab=20.82 E-value=1.3e+02 Score=22.05 Aligned_cols=28 Identities=18% Similarity=0.181 Sum_probs=23.7
Q ss_pred cEEEEEecCHhHHHHHHHHHhcccccCC
Q 029415 145 DELILDGNDIELVSRSAALINQKCHVKN 172 (194)
Q Consensus 145 ~~I~i~GiDkq~Vgq~AA~Ir~~~~~Kg 172 (194)
-+|.|+|.|...|-+++..|....+..|
T Consensus 3 irI~l~s~d~~~L~~~~~~i~~~a~~~g 30 (99)
T TIGR01049 3 IRIKLKSYDHRLLDQSTKKIVETAKRTG 30 (99)
T ss_pred EEEEEEECCHHHHHHHHHHHHHHHHHcC
Confidence 4799999999999999999988765443
No 58
>PF14250 AbrB-like: AbrB-like transcriptional regulator
Probab=20.81 E-value=1.3e+02 Score=21.33 Aligned_cols=14 Identities=36% Similarity=0.586 Sum_probs=9.4
Q ss_pred CCeEEEEcccCceeeE
Q 029415 112 DKSIEIRNFLGEKKVR 127 (194)
Q Consensus 112 g~~l~l~n~LG~Sh~i 127 (194)
|+..++ +||++|..
T Consensus 56 GdEFeI--~LgrKhI~ 69 (71)
T PF14250_consen 56 GDEFEI--KLGRKHIH 69 (71)
T ss_pred CCEEEE--EeCcceEE
Confidence 556677 77777743
No 59
>PRK14435 acylphosphatase; Provisional
Probab=20.70 E-value=23 Score=25.62 Aligned_cols=53 Identities=17% Similarity=0.164 Sum_probs=31.3
Q ss_pred EEEEEEecceeEEccCCCeEEEEcccCceeeEEEecCCCeEEEecCCCCcEEEEEecCHhHHHHHHHHHhcc
Q 029415 96 RFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQK 167 (194)
Q Consensus 96 ~lvGvGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~gv~v~~~~~~k~~I~i~GiDkq~Vgq~AA~Ir~~ 167 (194)
++-|||| |..+......+.| -||- -..|+| . =+|.++|.+ +.|.+|.+.|++.
T Consensus 11 ~VQGVGF--R~~v~~~A~~~gl---~G~V----~N~~dG-------~--Vei~~~G~~-~~i~~f~~~l~~g 63 (90)
T PRK14435 11 IVQGVGF--RYFTRRVAKSLGV---KGYV----MNMDDG-------S--VFIHAEGDE-NALRRFLNEVAKG 63 (90)
T ss_pred EeCCcCC--hHHHHHHHHHhCC---EEEE----EECCCC-------C--EEEEEEECH-HHHHHHHHHHhhC
Confidence 5668999 6777433334444 2322 233333 0 267777844 6699999998753
No 60
>PRK14450 acylphosphatase; Provisional
Probab=20.52 E-value=30 Score=24.96 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=31.1
Q ss_pred EEEEEEEecceeEEccCCCeEEEEcccCceeeEEEecCCCeEEEecCCCCcEEEEEecCHhHHHHHHHHHhc
Q 029415 95 MRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQ 166 (194)
Q Consensus 95 L~lvGvGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~gv~v~~~~~~k~~I~i~GiDkq~Vgq~AA~Ir~ 166 (194)
=++.|||| |..+......+.| -|| .-.+++|-.| +|.++| |.+.|.+|.+.+++
T Consensus 10 G~VQGVGF--R~~v~~~A~~~~l---~G~----V~N~~dG~~V--------ei~~~G-~~~~v~~f~~~l~~ 63 (91)
T PRK14450 10 GKVQGVYF--RDFTRTQATRLGL---CGY----AKNLANGNEV--------EVVAEG-DKDSLLEFLDLLRS 63 (91)
T ss_pred EEecCcCc--HHHHHHHHHHcCC---EEE----EEECCCCCEE--------EEEEEe-CHHHHHHHHHHHhh
Confidence 35678999 6777433333444 232 1334455111 456677 55779999988874
No 61
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=20.47 E-value=35 Score=23.00 Aligned_cols=9 Identities=56% Similarity=1.065 Sum_probs=4.7
Q ss_pred eeeeceEEE
Q 029415 176 RKFLDGIYV 184 (194)
Q Consensus 176 R~f~DGiyv 184 (194)
|+|+||+-.
T Consensus 24 r~flDg~~~ 32 (56)
T PF04863_consen 24 RAFLDGLIA 32 (56)
T ss_dssp E--TTS-EE
T ss_pred eeeeccccc
Confidence 789999763
No 62
>PF14324 PINIT: PINIT domain; PDB: 3I2D_A.
Probab=20.34 E-value=41 Score=26.33 Aligned_cols=28 Identities=29% Similarity=0.540 Sum_probs=15.1
Q ss_pred eeeeEEcCCCcEEEEeCcEEE--EEcCCcE
Q 029415 6 SSETMEIPEGVKVKINAKIIE--VEGPRGK 33 (194)
Q Consensus 6 ~~~~I~IP~~V~v~i~~~~v~--vkGp~G~ 33 (194)
+..+++.|..++|.+++..+. +.||+++
T Consensus 73 ~~q~i~FP~~~evkvN~~~v~~~~~glknK 102 (144)
T PF14324_consen 73 GNQPIEFPPPCEVKVNGKQVKLNNRGLKNK 102 (144)
T ss_dssp GGB-----SSEEEEETTEE--S--SS-TTS
T ss_pred CccccccCCCeEEEEeCEEcccCccCCCCC
Confidence 467899999999999998886 5665544
Done!