Query 029415
Match_columns 194
No_of_seqs 147 out of 1036
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 20:38:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029415.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029415hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5e_H L8, RP24, YL11, 60S rib 100.0 1.2E-72 4.1E-77 464.8 21.2 188 1-193 1-190 (191)
2 3iz5_F 60S ribosomal protein L 100.0 1.3E-72 4.4E-77 464.2 21.0 189 1-193 1-189 (190)
3 4a17_E RPL9, 60S ribosomal pro 100.0 1.4E-72 4.9E-77 463.3 18.1 188 1-193 1-188 (188)
4 2zkr_e 60S ribosomal protein L 100.0 9.7E-72 3.3E-76 459.8 18.3 188 1-194 1-191 (192)
5 3j21_F 50S ribosomal protein L 100.0 1.5E-69 5.1E-74 444.1 19.0 178 3-191 4-181 (184)
6 1vq8_E 50S ribosomal protein L 100.0 4.5E-69 1.5E-73 438.9 19.2 176 6-192 2-177 (178)
7 3v2d_H 50S ribosomal protein L 100.0 7.1E-61 2.4E-65 391.6 15.7 170 3-189 2-174 (180)
8 1nkw_E 50S ribosomal protein L 100.0 1.7E-57 5.9E-62 378.9 21.6 170 1-188 28-200 (212)
9 1rl6_A Protein (ribosomal prot 100.0 2.5E-58 8.6E-63 375.6 16.1 159 3-176 1-162 (177)
10 3r8s_G 50S ribosomal protein L 100.0 7.5E-58 2.6E-62 372.5 12.7 159 3-176 1-162 (176)
11 3bbo_I Ribosomal protein L6; l 100.0 3.6E-57 1.2E-61 379.6 9.7 169 2-187 43-215 (223)
12 2zjr_E 50S ribosomal protein L 100.0 5E-58 1.7E-62 375.9 0.8 168 3-187 2-172 (185)
13 2cql_A OK/SW-CL.103, 60S ribos 100.0 4.4E-29 1.5E-33 186.2 7.3 91 1-94 8-98 (100)
14 2cql_A OK/SW-CL.103, 60S ribos 76.9 1.9 6.6E-05 31.1 3.2 23 128-153 16-38 (100)
15 2bol_A TSP36, small heat shock 74.8 14 0.00047 31.7 8.6 46 13-63 125-186 (314)
16 3j21_F 50S ribosomal protein L 60.1 7.5 0.00026 31.0 3.6 22 9-30 121-142 (184)
17 1vq8_E 50S ribosomal protein L 57.3 9.1 0.00031 30.4 3.6 22 9-30 116-137 (178)
18 1rl6_A Protein (ribosomal prot 55.7 9.4 0.00032 30.2 3.5 20 129-151 8-27 (177)
19 3u5e_H L8, RP24, YL11, 60S rib 54.7 12 0.00041 30.0 3.9 22 128-152 9-30 (191)
20 3iz5_F 60S ribosomal protein L 54.4 12 0.00041 29.9 3.9 13 129-141 10-22 (190)
21 3v2d_H 50S ribosomal protein L 52.9 10 0.00034 30.1 3.2 20 129-151 9-28 (180)
22 2zkr_e 60S ribosomal protein L 51.9 8.6 0.00029 30.8 2.7 21 129-152 10-30 (192)
23 1nkw_E 50S ribosomal protein L 49.9 11 0.00037 30.8 3.0 21 128-151 35-55 (212)
24 4a17_E RPL9, 60S ribosomal pro 48.9 12 0.00042 29.8 3.2 22 128-152 9-30 (188)
25 3gla_A Low molecular weight he 43.6 71 0.0024 21.7 6.2 18 13-30 27-44 (100)
26 3bbo_I Ribosomal protein L6; l 39.9 10 0.00035 31.2 1.4 23 128-153 50-72 (223)
27 3r8s_G 50S ribosomal protein L 39.6 9.9 0.00034 30.0 1.2 14 154-167 61-74 (176)
28 2zjr_E 50S ribosomal protein L 39.6 13 0.00046 29.5 2.0 23 9-31 114-137 (185)
29 4eld_A MJ16.5-P1, small heat s 39.4 71 0.0024 24.0 6.1 18 13-30 79-96 (161)
30 3q9p_A Heat shock protein beta 37.0 21 0.00072 24.2 2.4 18 13-30 20-37 (85)
31 4fqn_A Malcavernin; helical do 35.3 16 0.00055 26.3 1.6 17 153-169 30-46 (98)
32 4fei_A Heat shock protein-rela 34.8 27 0.00091 24.3 2.8 45 13-63 29-92 (102)
33 3j20_L 30S ribosomal protein S 30.0 44 0.0015 23.8 3.3 31 145-175 4-34 (102)
34 3d3c_J 30S ribosomal protein S 29.4 43 0.0015 23.3 3.1 30 144-173 10-39 (87)
35 2w7a_A LINE-1 ORF1P; RNA-bindi 29.0 28 0.00096 25.0 2.0 28 152-180 73-100 (100)
36 3r8n_J 30S ribosomal protein S 27.6 28 0.00097 24.5 1.9 27 146-172 3-29 (98)
37 3r2c_J Protein NUSE, 30S ribos 27.3 56 0.0019 22.5 3.3 29 144-172 5-33 (83)
38 2y1y_A Alpha-crystallin B chai 27.2 31 0.0011 23.4 2.0 19 13-31 19-37 (90)
39 2ctf_A Vigilin; K homology typ 25.6 1.1E+02 0.0038 21.4 4.8 32 134-167 58-89 (102)
40 2wj5_A Heat shock protein beta 24.6 37 0.0013 23.7 2.0 20 13-32 24-43 (101)
41 2jug_A TUBC protein; docking d 24.5 27 0.00092 23.3 1.2 25 14-38 17-41 (78)
42 3l1e_A Alpha-crystallin A chai 24.5 37 0.0013 23.9 2.0 19 13-31 25-43 (106)
43 2opv_A KHSRP protein; KH domai 23.5 1E+02 0.0035 20.5 4.1 21 146-167 62-82 (85)
44 3u5c_U 40S ribosomal protein S 21.1 85 0.0029 23.1 3.5 31 145-175 22-52 (121)
45 2ctj_A Vigilin; K homology typ 20.3 98 0.0033 21.4 3.5 34 134-168 48-83 (95)
No 1
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H
Probab=100.00 E-value=1.2e-72 Score=464.79 Aligned_cols=188 Identities=54% Similarity=0.892 Sum_probs=178.6
Q ss_pred CceeeeeeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEcccCccCCcEEEEEecCCChhhhhhHHHHHHHH
Q 029415 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHV 80 (194)
Q Consensus 1 m~~~~~~~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli 80 (194)
|++++.++||.||+||+|+++++.|+|+||+|+|+++|+|+.+++++.. ++.+.+++|+++|+++|+|||+||||
T Consensus 1 Mk~i~~~~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~~~~~v~i~~~~-----~~~l~v~~~~~~kk~~a~~gt~rsli 75 (191)
T 3u5e_H 1 MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVN-----NQLIKVAVHNGGRKHVAALRTVKSLV 75 (191)
T ss_dssp CCEEEEEEEEECCTTCEEEEETTEEEEEETTEEEEEECTTTCCEEEEEE-----TTEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred CceeeecccEECCCCcEEEEeCCEEEEEcCCeEEEEEccCCcEEEEEec-----CCeEEEEECCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998667776322 58899999999999999999999999
Q ss_pred hhheeeeccceEEEEEEEEEEecceeEE--ccCCCeEEEEcccCceeeEEEecCCCeEEEecCCCCcEEEEEecCHhHHH
Q 029415 81 QNLITGVTKGYRYKMRFVYAHFPINASI--ANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVS 158 (194)
Q Consensus 81 ~NmI~GVt~Gf~~~L~lvGvGypira~~--~~~g~~l~l~n~LG~Sh~i~~~iP~gv~v~~~~~~k~~I~i~GiDkq~Vg 158 (194)
+|||+|||+||+|+|+++|+||||+|++ +++|+.|+|+||||||||+.++||+||++++++|++|+|+|+|+|||+||
T Consensus 76 ~NmI~GVt~Gf~~kL~lvgvgyri~a~v~~~~~G~~l~l~n~LG~sh~v~~~ip~Gv~v~v~~~~kteIil~G~Dke~Vg 155 (191)
T 3u5e_H 76 DNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVS 155 (191)
T ss_dssp HHHHHHHHTCEEEEEEEECSSSCCEEEEECSSSCCEEEEECGGGCSSCEEEECCTTEEEEECTTSTTEEEEEESCHHHHH
T ss_pred HhheeeeccCEEEEEEEEEEeeeEEEEEEEcCCCCEEEEEeccCCcccEEEECCCCEEEEECCCCCCEEEEEECCHHHHH
Confidence 9999999999999999999999998998 77899999999999999999999999999999976699999999999999
Q ss_pred HHHHHHhcccccCCCceeeeeceEEEeeeeeeecC
Q 029415 159 RSAALINQKCHVKNKDIRKFLDGIYVSEKGTIVGE 193 (194)
Q Consensus 159 q~AA~Ir~~~~~Kgkd~R~f~DGiyv~~k~~~~~~ 193 (194)
||||+||++|++|+||+|+|||||||+||+++++|
T Consensus 156 q~AA~Irq~~~vk~kD~R~FlDGiyv~ek~~~~~~ 190 (191)
T 3u5e_H 156 QNAADLQQICRVRNKDIRKFLDGIYVSHKGFITED 190 (191)
T ss_dssp HHHHHHHHTTCCCSSCTTTCCCEEEEEEEEESSSC
T ss_pred HHHHHHHhhcccCCCcccEeecCeEEEEeeEEEec
Confidence 99999999999999999999999999999998876
No 2
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_F
Probab=100.00 E-value=1.3e-72 Score=464.25 Aligned_cols=189 Identities=81% Similarity=1.264 Sum_probs=179.5
Q ss_pred CceeeeeeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEcccCccCCcEEEEEecCCChhhhhhHHHHHHHH
Q 029415 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHV 80 (194)
Q Consensus 1 m~~~~~~~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli 80 (194)
|++++.++||.||+||+|+++++.|+|+||+|+|+++|+|..+++.+..+ ++.+.+++|+++|+++|+|||+||||
T Consensus 1 Mk~i~~~~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~~~~~v~i~~~~~----~~~l~v~~~~~~kk~~a~~gt~rsli 76 (190)
T 3iz5_F 1 MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEG----GRKLQVDAWFGTRRTMAAIRTAISHV 76 (190)
T ss_dssp CCCCCCCEEEECCTTCEEEEETTEEEEEETTEEEEEECCCTTEEEEEETT----TTEEEEEESCCCHHHHHHHHHHHHHH
T ss_pred CcccccCccEECCCCCEEEEeCCEEEEECCCceEEEEccCCcEEEEEEcC----CCEEEEEECCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999876788885322 58999999999999999999999999
Q ss_pred hhheeeeccceEEEEEEEEEEecceeEEccCCCeEEEEcccCceeeEEEecCCCeEEEecCCCCcEEEEEecCHhHHHHH
Q 029415 81 QNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRS 160 (194)
Q Consensus 81 ~NmI~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~gv~v~~~~~~k~~I~i~GiDkq~Vgq~ 160 (194)
+|||+|||+||+|+|+++|+|||+.|.++++|+.|+|+||||||||+.++||+||++++++|++|+|+|+|+|||+||||
T Consensus 77 ~NmI~GVt~Gf~~kL~lvgvgyr~~~~i~~~G~~l~l~N~LG~sh~v~~~ip~GV~v~v~~~~k~eIil~G~Dke~Vgq~ 156 (190)
T 3iz5_F 77 QNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRS 156 (190)
T ss_dssp HHHHHHHHTCEEEEEEEECSSSCCEEEEETTTTEEEEESGGGCSSCEEEECCSSCEEEECCTTTCEEEEEESCHHHHHHH
T ss_pred HhheeeeccCEEEEEEEEEEcccceeEEccCCCEEEEEecCCccccEEEECCCCeEEEEcCCCCCEEEEEECCHHHHHHH
Confidence 99999999999999999999998778777789999999999999999999999999999998668999999999999999
Q ss_pred HHHHhcccccCCCceeeeeceEEEeeeeeeecC
Q 029415 161 AALINQKCHVKNKDIRKFLDGIYVSEKGTIVGE 193 (194)
Q Consensus 161 AA~Ir~~~~~Kgkd~R~f~DGiyv~~k~~~~~~ 193 (194)
||+||++|++||||+|+|||||||+||++++++
T Consensus 157 AA~Irq~~~vk~kD~R~F~DGiyv~ek~~~~~~ 189 (190)
T 3iz5_F 157 AALINQKCHVKNKDIRKFLDGIYVSDKGTITED 189 (190)
T ss_dssp HHHHHHHTCCCSSCTTTCCCEEEECCCCCCCCC
T ss_pred HHHHHhhccccCCcccEeecCEEEEeeeEEecc
Confidence 999999999999999999999999999999876
No 3
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E
Probab=100.00 E-value=1.4e-72 Score=463.31 Aligned_cols=188 Identities=42% Similarity=0.791 Sum_probs=177.3
Q ss_pred CceeeeeeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEcccCccCCcEEEEEecCCChhhhhhHHHHHHHH
Q 029415 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHV 80 (194)
Q Consensus 1 m~~~~~~~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli 80 (194)
|++++.++||.||+||+|+++++.|+|+||+|+|+++|+|+++++.+. + ++.+.+++|+++|+++|+|||+||||
T Consensus 1 Mk~i~~~~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~~~~~v~i~~~-~----~~~l~v~~~~~~kk~~a~~gt~rsli 75 (188)
T 4a17_E 1 MRHLLTEVNVPIPDKVTITAKQRVVEVKGPLGTIKRAFRYASVDIQKP-T----ADNVKLQIWQASRKERAVLQSIASQI 75 (188)
T ss_dssp CCEEEEEEECCCCTTCEEEEETTEEEEEETTEEEEEECTTSCCEECCC-B----TTBCEEEEEEECHHHHHHHHHHHHHH
T ss_pred CceeeecccEECCCCcEEEEeCCEEEEEcCCeEEEEEccCCeEEEEEc-c----CCeEEEEECCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999866777742 2 58899999999999999999999999
Q ss_pred hhheeeeccceEEEEEEEEEEecceeEEccCCCeEEEEcccCceeeEEEecCCCeEEEecCCCCcEEEEEecCHhHHHHH
Q 029415 81 QNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRS 160 (194)
Q Consensus 81 ~NmI~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~gv~v~~~~~~k~~I~i~GiDkq~Vgq~ 160 (194)
+|||+|||+||+|+|+++|+|||+.|.++++|+.|+|+||||||||+.++||+||++++++|+||+|+|+|+|||+||||
T Consensus 76 ~NmI~GVt~Gf~~kL~lvgvgyr~~~~v~~~G~~l~l~N~LG~sh~v~~~ip~gv~v~v~~~~k~eIil~G~Dke~Vgq~ 155 (188)
T 4a17_E 76 KNMIRGVTEGYKFKMKLAFAHFPIQEAVAKDGSSIEIKHFLGEKRIRRIQALPGVKISRKDEEKNTLTLQGIDLNNVSQT 155 (188)
T ss_dssp HHHHHHHHSCEEEEEEEECSSSCCEEEECSSSCEEEEECGGGCCCEEEEECCTTCEEECCTTSSSEEEEEESCHHHHHHH
T ss_pred HhheEeeccCeEEEEEEEEEcccceEEEccCCCEEEEEeccCCcccEEEECCCCeEEEECCCCCCEEEEEEcCHHHHHHH
Confidence 99999999999999999999998778887789999999999999999999999999999998778999999999999999
Q ss_pred HHHHhcccccCCCceeeeeceEEEeeeeeeecC
Q 029415 161 AALINQKCHVKNKDIRKFLDGIYVSEKGTIVGE 193 (194)
Q Consensus 161 AA~Ir~~~~~Kgkd~R~f~DGiyv~~k~~~~~~ 193 (194)
||+||++|++||||+|+|||||||+||++++++
T Consensus 156 AA~Ir~~~~vk~kD~R~F~DGiyv~ek~~~~~~ 188 (188)
T 4a17_E 156 CALIHQSCLVKEKDIRQFLDGIYVSDKRLAMNE 188 (188)
T ss_dssp HHHHHHHTCCCSSCHHHHCCEEEEEEEEECC--
T ss_pred HHHHHhhcccCCCcccEeecCeEEEEeEEEecC
Confidence 999999999999999999999999999998764
No 4
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=9.7e-72 Score=459.81 Aligned_cols=188 Identities=60% Similarity=0.958 Sum_probs=162.1
Q ss_pred CceeeeeeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEcccCccCCcE---EEEEecCCChhhhhhHHHHH
Q 029415 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRK---LKIDAWFGSRKTSAAIRTAL 77 (194)
Q Consensus 1 m~~~~~~~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~---l~v~~~~~~k~~~a~~gt~r 77 (194)
|++++.+.||.||+||+|+++++.|+|+||+|+|+++|+++.+++..+ ++. +.+++|+++++++|+|||+|
T Consensus 1 Mk~~~~k~pI~IP~gV~V~i~~~~VtVkGpkG~L~~~~~~~~v~i~~~------~~~~~~i~v~~~~~~k~~~a~~Gt~r 74 (192)
T 2zkr_e 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLL------GKKKKRLRVDKWWGNRKELATVRTIC 74 (192)
T ss_dssp ---------CCCCTTCEEEEETTEEEEEETTEEEEEECCSSSCEEEEE------TTTTCEEEEECSCCCHHHHHHHHHHH
T ss_pred CCcccccCcEEcCCCCEEEEeCCEEEEECCCeEEEEEeCCCCEEEEEe------cCceeEEEEEcCCCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999866777733 366 99999999999999999999
Q ss_pred HHHhhheeeeccceEEEEEEEEEEecceeEEccCCCeEEEEcccCceeeEEEecCCCeEEEecCCCCcEEEEEecCHhHH
Q 029415 78 SHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELV 157 (194)
Q Consensus 78 sli~NmI~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~gv~v~~~~~~k~~I~i~GiDkq~V 157 (194)
|||+|||+|||+||+++|+++|+|||+.+.++++|+.|+|+|+||||||+.++||+||+++++++.+|+|+|+|+|||+|
T Consensus 75 sli~NmI~GVt~Gf~~~L~lvGvGyra~v~~e~~g~~l~l~N~LG~Sh~v~~~iP~gv~v~v~~~~~t~I~v~GiDKq~V 154 (192)
T 2zkr_e 75 SHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELV 154 (192)
T ss_dssp HHHHHHHHHHHTCEEEEEEEECSSSCCEEEECTTCSEEEEESGGGCSSCEEEECCSSCEEEECSSCSSEEEEEESCHHHH
T ss_pred HHHhCEEEeeccCcEEEEEEEEecceeEEEEccCCCEEEEeCcCCCcccEEeeCCCCeEEEEcCCCCCEEEEEeCCHHHH
Confidence 99999999999999999999999996555588789999999999999999999999999999987568999999999999
Q ss_pred HHHHHHHhcccccCCCceeeeeceEEEeeeeeeecCC
Q 029415 158 SRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIVGED 194 (194)
Q Consensus 158 gq~AA~Ir~~~~~Kgkd~R~f~DGiyv~~k~~~~~~~ 194 (194)
|||||+||++|++||||+|+|||||||+||++.+++|
T Consensus 155 gq~AA~IR~~~~vk~kD~R~F~Dgiyv~~k~~~~~~~ 191 (192)
T 2zkr_e 155 SNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQAD 191 (192)
T ss_dssp HHHHHHHHHHTCCSSSCTTTCCCEEEEEEC-------
T ss_pred HHHHHHHHhhCcCCCCCccEeecCEEEEEeccccccC
Confidence 9999999999999999999999999999999998876
No 5
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.5e-69 Score=444.07 Aligned_cols=178 Identities=39% Similarity=0.629 Sum_probs=167.9
Q ss_pred eeeeeeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEcccCccCCcEEEEEecCCChhhhhhHHHHHHHHhh
Q 029415 3 TILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQN 82 (194)
Q Consensus 3 ~~~~~~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli~N 82 (194)
....+.||.||+||+|+++++.|+|+||+|+|+++|+|++++++++ ++.+.+++|+++|+++|+|||+||||+|
T Consensus 4 ~~~~~~~I~IP~gV~v~i~~~~V~VkGpkG~L~~~~~~~~v~i~~~------~~~l~v~~~~~~kk~~a~~gt~rsli~N 77 (184)
T 3j21_F 4 DAWIREEVEIPEGVEVTVEGYKVKVKGPKGELEREFFWPGIQIFTE------DGNVVIYKDFPRRKDVAIARTFAAHIRN 77 (184)
T ss_dssp CSSCEEEEECCSSCEEEESSSEEEEECSSCEEEEECCCTTCEEEEE------TTEEEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred chheeEEEeCCCCcEEEEeCCEEEEEcCCeEEEEEecCCcEEEEEe------CCEEEEEECCCCHHHHHHHHHHHHHHHh
Confidence 3356899999999999999999999999999999998657888743 4889999999999999999999999999
Q ss_pred heeeeccceEEEEEEEEEEecceeEEccCCCeEEEEcccCceeeEEEecCCCeEEEecCCCCcEEEEEecCHhHHHHHHH
Q 029415 83 LITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAA 162 (194)
Q Consensus 83 mI~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~gv~v~~~~~~k~~I~i~GiDkq~Vgq~AA 162 (194)
||+|||+||+|+|+++|+||||||++ +|+.|+|+||||||||+.++||+||++++++ ++|+|+|+|||+|||+||
T Consensus 78 mI~GVt~Gf~~kL~lvgvgypira~~--~g~~l~l~n~LG~sh~v~~~ip~gv~v~v~~---~~Iil~G~Dke~Vgq~AA 152 (184)
T 3j21_F 78 MIKGVTEGFTYKLKVVYSHFPISVKV--QGDEVIIENFLGEKAPRKAKILPGVTVKVRG---QEIIVEGIDKEAVGQTAA 152 (184)
T ss_dssp HHHHHHTCEEEEEEEECSSSCCEEEE--ETTEEEEECGGGCSSCEEEECCTTEEEEEET---TEEEEEESCHHHHHHHHH
T ss_pred hheeeccCeEEEEEEEEecccceEEE--cCCEEEEEecCCccccEEEECCCCeEEEecC---CEEEEEECCHHHHHHHHH
Confidence 99999999999999999999999999 6899999999999999999999999999997 599999999999999999
Q ss_pred HHhcccccCCCceeeeeceEEEeeeeeee
Q 029415 163 LINQKCHVKNKDIRKFLDGIYVSEKGTIV 191 (194)
Q Consensus 163 ~Ir~~~~~Kgkd~R~f~DGiyv~~k~~~~ 191 (194)
+||++|+|||||+|+|||||||+||+...
T Consensus 153 ~Ir~~~~vK~KDiR~F~DGiyv~ek~~~~ 181 (184)
T 3j21_F 153 NIEQATRITKWDRRIFQDGIYIVEKAGKP 181 (184)
T ss_dssp HHHHHHCCCSSCSSSCCCEEEESCSSSCC
T ss_pred HHhhccccCCCcccEeeCCEEEEecCccc
Confidence 99999999999999999999999998543
No 6
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=100.00 E-value=4.5e-69 Score=438.93 Aligned_cols=176 Identities=34% Similarity=0.540 Sum_probs=164.1
Q ss_pred eeeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEcccCccCCcEEEEEecCCChhhhhhHHHHHHHHhhhee
Q 029415 6 SSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLIT 85 (194)
Q Consensus 6 ~~~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli~NmI~ 85 (194)
.+.||.||+||+|+++++.|+|+||+|+|+++|+|..+++.++ ++.+.+++|+++|+++|+|||+||||+|||+
T Consensus 2 ~~~pI~IP~gV~v~i~~~~vtVkGpkG~L~~~~~~~~v~i~~~------~~~i~v~~~~~~k~~~a~~Gt~rsli~Nmi~ 75 (178)
T 1vq8_E 2 PRVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVD------GDTVVIESDEDNAKTMSTIGTFQSHIENMFH 75 (178)
T ss_dssp CEEEEECCTTCEEEEETTEEEEEETTEEEEEECCCTTCEEEEE------TTEEEEECSCCSHHHHHHHHHHHHHHHHHHH
T ss_pred ccccEEcCCCCEEEEeCCEEEEECCCeEEEEEEECCeEEEEEE------CCEEEEEcCCCCHHHHHHHHHHHHHHcCEEE
Confidence 3679999999999999999999999999999995547888743 5889999999999999999999999999999
Q ss_pred eeccceEEEEEEEEEEecceeEEccCCCeEEEEcccCceeeEEEecCCCeEEEecCCCCcEEEEEecCHhHHHHHHHHHh
Q 029415 86 GVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALIN 165 (194)
Q Consensus 86 GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~gv~v~~~~~~k~~I~i~GiDkq~Vgq~AA~Ir 165 (194)
|||+||+|+|+++|+||||||++ +|+.|+|+|+||||||+.+++|+||++++++ |+|+|+|+|||+||||||+||
T Consensus 76 GVt~Gf~~~L~ivGvGypira~~--~g~~l~l~N~LG~shpv~~~ip~gi~v~v~~---~~I~v~G~Dkq~Vgq~AA~Ir 150 (178)
T 1vq8_E 76 GVTEGWEYGMEVFYSHFPMQVNV--EGDEVVIENFLGEKAPRRTTIHGDTDVEIDG---EELTVSGPDIEAVGQTAADIE 150 (178)
T ss_dssp HHHTCEEEEEEEECSSSCCEEEE--ETTEEEEESGGGCSSCEEEECCTTCEEEEET---TEEEEEESCHHHHHHHHHHHH
T ss_pred EEccCeEEEEEEEeeCCceEEEE--cCCEEEEEccccccccEEEeCCCCeEEEEeC---CEEEEEECCHHHHHHHHHHHh
Confidence 99999999999999999999999 6899999999999999999999999999997 899999999999999999999
Q ss_pred cccccCCCceeeeeceEEEeeeeeeec
Q 029415 166 QKCHVKNKDIRKFLDGIYVSEKGTIVG 192 (194)
Q Consensus 166 ~~~~~Kgkd~R~f~DGiyv~~k~~~~~ 192 (194)
++|++||||+|+|+|||||+||++..|
T Consensus 151 ~~r~pKGKGIr~F~DGiyi~~k~~~~~ 177 (178)
T 1vq8_E 151 QLTRINDKDVRVFQDGVYITRKPNRGD 177 (178)
T ss_dssp HTTCCSSSCTTTCCCEEEEEECC----
T ss_pred ccCCCCCCceeEEECCEEEEecccccC
Confidence 999999999999999999999997664
No 7
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=100.00 E-value=7.1e-61 Score=391.60 Aligned_cols=170 Identities=19% Similarity=0.292 Sum_probs=162.5
Q ss_pred eeeeeeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEcccCccCCcEEEEEecCCChhhhhhHHHHHHHHhh
Q 029415 3 TILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQN 82 (194)
Q Consensus 3 ~~~~~~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli~N 82 (194)
+++|++||.||+||+|+++++.|+|+||+|+|+++|+| .+++.++ ++.|.|++|+++++++|+|||+||||+|
T Consensus 2 Srigk~pI~IP~gV~v~i~~~~v~VkGpkG~L~~~~~~-~v~i~~~------~~~l~v~~~~~~kk~~a~~gt~rsli~N 74 (180)
T 3v2d_H 2 SRIGRLPIPVPKGVSVEVAPGRVKVKGPKGELEVPVSP-EMRVVVE------EGVVRVERPSDERRHKSLHGLTRTLIAN 74 (180)
T ss_dssp CCTTTSCEECCTTCEEEEETTEEEEECSSCEEEEECCT-TSEEEEE------TTEEEEECSCSCHHHHHHHHHHHHHHHH
T ss_pred CcccCceeeCCCCcEEEEeCCEEEEEeCCcEEEEEeCC-CEEEEEE------CCEEEEEECCCcHHHHHHHHHHHHHHhh
Confidence 78999999999999999999999999999999999998 7888843 5899999999999999999999999999
Q ss_pred heeeeccceEEEEEEEEEEecceeEEccCCCeEEEEcccCceeeEEEecCCCeEEEecCCCCcEEEEEecCHhHHHHHHH
Q 029415 83 LITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAA 162 (194)
Q Consensus 83 mI~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~gv~v~~~~~~k~~I~i~GiDkq~Vgq~AA 162 (194)
||+|||+||+++|+++|+|| ||++ +|+.|+| +||||||+.++||+||+++++++ |+|+|+|+|||+||||||
T Consensus 75 mI~GVt~Gf~~kL~lvgvgy--ra~~--~g~~l~l--~LG~sh~v~~~ip~gv~v~v~~~--t~Iil~G~Dke~Vgq~AA 146 (180)
T 3v2d_H 75 AVKGVSEGYSKELLIKGIGY--RARL--VGRALEL--TVGFSHPVVVEPPEGITFEVPEP--TRVRVSGIDKQKVGQVAA 146 (180)
T ss_dssp HHHHHHTCEEEEEEEESTTC--EEEE--ETTEEEE--ECSSSSCEEECCCTTCEEECSST--TEEEEEESCHHHHHHHHH
T ss_pred hEEeecCCcEEEEEEEEEee--EEEE--CCCEEEE--EecCCeeEEEECCCCeEEEECCC--CEEEEEECcHHHHHHHHH
Confidence 99999999999999999999 7999 6899999 99999999999999999999998 999999999999999999
Q ss_pred HHhcccc---cCCCceeeeeceEEEeeeee
Q 029415 163 LINQKCH---VKNKDIRKFLDGIYVSEKGT 189 (194)
Q Consensus 163 ~Ir~~~~---~Kgkd~R~f~DGiyv~~k~~ 189 (194)
+||+||+ |||||+|. ||.||.+|+-
T Consensus 147 ~Ir~~r~PepYKGKGIry--~~e~I~~K~g 174 (180)
T 3v2d_H 147 NIRAIRKPSAYHEKGIYY--AGEPVRLKPG 174 (180)
T ss_dssp HHHHHTCCCSSSSCEEEE--TTCCCCCCCC
T ss_pred HhcccCCCCCcCCCcccC--CCEEEEEeCc
Confidence 9999998 99999996 9999998863
No 8
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=100.00 E-value=1.7e-57 Score=378.89 Aligned_cols=170 Identities=24% Similarity=0.390 Sum_probs=157.4
Q ss_pred CceeeeeeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEcccCccCCcEEEEEecCCChhhhhhHHHHHHHH
Q 029415 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHV 80 (194)
Q Consensus 1 m~~~~~~~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli 80 (194)
|.+ +++.||.||+||+|+++++.|+|+||+|+|+++|++ ++++. .+ ++.|.|++|+++++++|+|||+||||
T Consensus 28 MSR-Igk~pI~IP~gV~V~i~~~~VtVKGPkG~L~~~~~~-~v~i~--~e----~~~i~v~~~~~~k~~ra~~Gt~rslI 99 (212)
T 1nkw_E 28 MSR-IGKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNT-ELTVR--QD----GDQLLVERPSDAQKHRALHGLTRTLV 99 (212)
T ss_pred ccc-ccccceecCCCcEEEEeCCEEEEECCCEEEEEECCC-CeEEE--EE----CCEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 544 499999999999999999999999999999999988 88887 42 58899999999999999999999999
Q ss_pred hhheeeeccceEEEEEEEEEEecceeEEccCCCeEEEEcccCceeeEEEecCCCeEEEecCCCCcEEEEEecCHhHHHHH
Q 029415 81 QNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRS 160 (194)
Q Consensus 81 ~NmI~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~gv~v~~~~~~k~~I~i~GiDkq~Vgq~ 160 (194)
+|||+|||+||+++|+++|+|| ||++ +|+.|+| +||||||+.++||+||+++++++ |+|+|+|+|||+||||
T Consensus 100 ~NMI~GVt~Gf~kkLelvGvGY--ra~~--~G~~L~L--~LG~SHpv~~~iP~GI~v~v~~~--t~Iiv~GiDKq~VGq~ 171 (212)
T 1nkw_E 100 ANAVKGVSDGYTINLELRGVGF--RAKL--TGKALEM--NIGYSHPVIIEPPAGVTFAVPEP--TRIDVSGIDKQLVGQV 171 (212)
T ss_pred hCEEEeeccCeEEEEEEeeeee--EEEc--CCCEEEE--EccCCccEEEECCCCeEEEeCCC--CEEEEEeCCHHHHHHH
Confidence 9999999999999999999999 8998 7999999 99999999999999999999997 8999999999999999
Q ss_pred HHHHhcccc---cCCCceeeeeceEEEeeee
Q 029415 161 AALINQKCH---VKNKDIRKFLDGIYVSEKG 188 (194)
Q Consensus 161 AA~Ir~~~~---~Kgkd~R~f~DGiyv~~k~ 188 (194)
||+||+||+ |||||+| ..|-+|--|+
T Consensus 172 AA~IR~~R~PEPYKGKGIr--y~~E~I~rK~ 200 (212)
T 1nkw_E 172 AANVRKVRKPDAYHGKGVR--FVGEQIALKA 200 (212)
T ss_pred HHHHhccCCCCCcCCCcEe--ECCeEEEEcC
Confidence 999999996 9999998 4555665554
No 9
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=100.00 E-value=2.5e-58 Score=375.59 Aligned_cols=159 Identities=26% Similarity=0.420 Sum_probs=146.8
Q ss_pred eeeeeeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEcccCccCCcEEEEEecCCChhhhhhHHHHHHHHhh
Q 029415 3 TILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQN 82 (194)
Q Consensus 3 ~~~~~~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli~N 82 (194)
+++|+.||.||+||+|+++++.|+|+||+|+|+++|++ .+++.++ ++.+.+++|+++++++|+|||+||||+|
T Consensus 1 srigk~pI~IP~gV~V~i~~~~VtVkGpkG~L~~~~~~-~v~i~~~------~~~l~v~~~~~~k~~~a~~Gt~rsli~N 73 (177)
T 1rl6_A 1 SRVGKKPIEIPAGVTVTVNGNTVTVKGPKGELTRTFHP-DMTITVE------GNVITVTRPSDEKHHRALHGTTRSLLAN 73 (177)
T ss_dssp ------CEECCTTCEEEEETTEEEEEETTEEEEEECCT-TCEEEEE------TTEEEEECSCCSHHHHHHHHHHHHHHHH
T ss_pred CcccccceEcCCCCEEEEeCCEEEEECCCeEEEEEcCC-CEEEEEe------CCEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 47899999999999999999999999999999999988 7888742 5889999999999999999999999999
Q ss_pred heeeeccceEEEEEEEEEEecceeEEccCCCeEEEEcccCceeeEEEecCCCeEEEecCCCCcEEEEEecCHhHHHHHHH
Q 029415 83 LITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAA 162 (194)
Q Consensus 83 mI~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~gv~v~~~~~~k~~I~i~GiDkq~Vgq~AA 162 (194)
||+|||+||+++|+++|+|| ||++ +|+.|+| +||||||+.++||+||+++++++ |+|+|+|+|||+||||||
T Consensus 74 mi~GVt~Gf~~~L~lvGvGy--ra~~--~G~~l~l--~LG~Shpv~~~iP~gi~v~v~~~--t~I~v~G~Dkq~Vgq~AA 145 (177)
T 1rl6_A 74 MVEGVSKGYEKALELVGVGY--RASK--QGKKLVL--SVGYSHPVEIEPEEGLEIEVPSQ--TKIIVKGADKQRVGELAA 145 (177)
T ss_dssp HHHHHHTCEEEEEEEESTTC--EEEE--ETTEEEE--ESSSSSCEEECCCTTEEEEEEET--TEEEEEESCHHHHHHHHH
T ss_pred EEEeEcCCcEEEEEEEeece--EEEe--cCCEEEE--EecCCccEEEeCCCCcEEEECCC--CEEEEEeCCHHHHHHHHH
Confidence 99999999999999999999 8999 6999999 99999999999999999999997 899999999999999999
Q ss_pred HHhcccc---cCCCcee
Q 029415 163 LINQKCH---VKNKDIR 176 (194)
Q Consensus 163 ~Ir~~~~---~Kgkd~R 176 (194)
+||+||+ |||||+|
T Consensus 146 ~Ir~~R~PepYKGKGI~ 162 (177)
T 1rl6_A 146 NIRAVRPPEPYKGKGIR 162 (177)
T ss_dssp HHHTTSCCCTTTCCEEE
T ss_pred HHhccCCCCCcCCCcEe
Confidence 9999996 9999888
No 10
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Probab=100.00 E-value=7.5e-58 Score=372.54 Aligned_cols=159 Identities=24% Similarity=0.409 Sum_probs=151.1
Q ss_pred eeeeeeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEcccCccCCcEEEEEecCCChhhhhhHHHHHHHHhh
Q 029415 3 TILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQN 82 (194)
Q Consensus 3 ~~~~~~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli~N 82 (194)
+++|++||.||+||+|+++++.|+|+||+|+|+++|++ ++++.++ ++.|.|+.|+++++++|+|||+||||+|
T Consensus 1 Srigk~pI~IP~gV~v~i~~~~V~VkGpkG~L~~~~~~-~v~i~~~------~~~l~v~~~~~~k~~~a~~gt~rsli~N 73 (176)
T 3r8s_G 1 SRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLND-AVEVKHA------DNTLTFGPRDGYADGWAQAGTARALLNS 73 (176)
T ss_dssp CTTTTSCEECCTTCCCEESSSEEECCBTTBCCEEECCS-SCEEEEE------TTEEEEECCTTCSSTHHHHHHHHHHHHH
T ss_pred CCccccceeCCCCcEEEEeCCEEEEEcCCEEEEEECCC-CEEEEEe------CCEEEEEECCCcHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999999999988 8888843 4889999999999999999999999999
Q ss_pred heeeeccceEEEEEEEEEEecceeEEccCCCeEEEEcccCceeeEEEecCCCeEEEecCCCCcEEEEEecCHhHHHHHHH
Q 029415 83 LITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAA 162 (194)
Q Consensus 83 mI~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~gv~v~~~~~~k~~I~i~GiDkq~Vgq~AA 162 (194)
||+|||+||+++|+++|+|| ||++ +|+.|.+ +||||||+.++||+||+++++++ |+|+|+|+|||+||||||
T Consensus 74 mI~GVt~Gf~~kL~lvgvgy--ra~~--~g~~l~l--~LG~sh~v~~~ip~gv~v~v~~~--t~Iil~G~Dke~Vgq~AA 145 (176)
T 3r8s_G 74 MVIGVTEGFTKKLQLVGVGY--RAAV--KGNVINL--SLGFSHPVDHQLPAGITAECPTQ--TEIVLKGADKQVIGQVAA 145 (176)
T ss_dssp TTTHHHHCEEECEEEESTTC--EEEC--SSSEEEE--ECSSSSCEEEECCTTCEEEEEET--TEEEEEESCHHHHHHHHH
T ss_pred HhhhcccCeEEEEEEeeeee--EEEe--CCCEEEE--EecCCeeEEEECCCCeEEEECCC--CEEEEEECcHHHHHHHHH
Confidence 99999999999999999999 7999 7899988 99999999999999999999987 999999999999999999
Q ss_pred HHhccc---ccCCCcee
Q 029415 163 LINQKC---HVKNKDIR 176 (194)
Q Consensus 163 ~Ir~~~---~~Kgkd~R 176 (194)
+||+|| ||||||+|
T Consensus 146 ~Ir~~R~PepYKGKGI~ 162 (176)
T 3r8s_G 146 DLRAYRRPEPYKGKGVR 162 (176)
T ss_dssp HHHHTTCCCSSSCCEEE
T ss_pred HhhccCCCCCccCCcee
Confidence 999999 59999887
No 11
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=3.6e-57 Score=379.64 Aligned_cols=169 Identities=18% Similarity=0.358 Sum_probs=156.4
Q ss_pred ceeeeeeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEE-EEcccCccCCcEEEEEecCCChhhhhhHHHHHHHH
Q 029415 2 KTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDF-HLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHV 80 (194)
Q Consensus 2 ~~~~~~~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~~i~i-~~~~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli 80 (194)
++++|+.||.||+||+|+++++.|+|+||+|+|+++|++ .+++ . .+ ++.|.+++|+++++++|+|||+||||
T Consensus 43 mSrigk~pI~IP~gV~V~i~~~~VtVKGPkG~L~~~~~~-~v~i~~--~e----~~~i~v~~~~~~k~~~a~~Gt~rslI 115 (223)
T 3bbo_I 43 ESRIGKQPIAVPSNVTIALEGQDLKVKGPLGELALTYPR-EVELTK--EE----SGFLRVKKTVETRRANQMHGLFRTLT 115 (223)
T ss_dssp CCCCCCCCCCCSTTSCEEESSSEEEECCSSCCEEEECCS-SCEEEE--CS----SSCEEEECSSCCTTHHHHHHHHTTTT
T ss_pred cccccccceecCCCCEEEEeCCEEEEECCCeEEEEEcCC-CEEEEE--ec----CCEEEEEcCCCcHHHHHHHHHHHHHh
Confidence 478899999999999999999999999999999999988 8888 6 42 58899999999999999999999999
Q ss_pred hhheeeeccceEEEEEEEEEEecceeEEccCCCeEEEEcccCceeeEEEecCCCeEEEecCCCCcEEEEEecCHhHHHHH
Q 029415 81 QNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRS 160 (194)
Q Consensus 81 ~NmI~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~gv~v~~~~~~k~~I~i~GiDkq~Vgq~ 160 (194)
+|||+|||+||+++|+++|+|| ||++ +|+.|+| +||||||+.++||+||+++++++ |+|+|+|+|||+||||
T Consensus 116 ~NMI~GVt~Gf~kkLelvGvGY--ra~~--~G~~L~L--~LG~SHpv~~~iP~GI~v~v~~~--t~Iii~GiDKq~Vgq~ 187 (223)
T 3bbo_I 116 DNMVVGVSKGFEKKLILVGVGY--RATV--DGKELVL--NLGFSHPVKMQIPDSLKVKVEEN--TRITVSGYDKSEIGQF 187 (223)
T ss_dssp THHHHHTTTCEEECEECCSTTC--CEEE--CSSEEEE--CSSCSSCEEEECCSSEEEECSST--TBCEEEESSSHHHHHH
T ss_pred hcEEEeeccCcEEEEEEeeece--EEEe--cCCEEEE--EeeCCccEEEECCCCeEEEeCCC--CEEEEEeCCHHHHHHH
Confidence 9999999999999999999999 7999 7999999 99999999999999999999997 8999999999999999
Q ss_pred HHHHhcccc---cCCCceeeeeceEEEeee
Q 029415 161 AALINQKCH---VKNKDIRKFLDGIYVSEK 187 (194)
Q Consensus 161 AA~Ir~~~~---~Kgkd~R~f~DGiyv~~k 187 (194)
||+||+||+ |||||+| ..|-+|--|
T Consensus 188 AA~IR~~R~PEPYKGKGI~--y~~E~I~rK 215 (223)
T 3bbo_I 188 AATVRKWRPPEPYKGKGVK--YSDEIVRRK 215 (223)
T ss_dssp HHHTTSSSCCCTTTCCSCE--ETTCCCCCC
T ss_pred HHHHhccCCCCCcCCCcEe--ECCeEEEEe
Confidence 999999996 9999988 344444433
No 12
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H
Probab=100.00 E-value=5e-58 Score=375.94 Aligned_cols=168 Identities=23% Similarity=0.384 Sum_probs=152.6
Q ss_pred eeeeeeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEcccCccCCcEEEEEecCCChhhhhhHHHHHHHHhh
Q 029415 3 TILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQN 82 (194)
Q Consensus 3 ~~~~~~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli~N 82 (194)
+++++.||.||+||+|+++++.|+|+||+|+|+++|++ .+++. .+ ++.+.+++|+++++++|+|||+||||+|
T Consensus 2 Srigk~pI~IP~gV~V~i~~~~VtVkGpkG~L~~~~~~-~v~i~--~~----~~~i~v~~~~~~k~~~a~~Gt~rslI~N 74 (185)
T 2zjr_E 2 SRIGKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNT-ELTVR--QD----GDQLLVERPSDAQKHRALHGLTRTLVAN 74 (185)
T ss_dssp ---CCCCBCCCTTCCEECCTTCCEECCSSCCCCCCCCS-SSCCB--CC----SSSBBCCCSSCSSHHHHHHHHHHHHHHH
T ss_pred CcccccceecCCCCEEEEeCCEEEEECCCeEEEEEcCC-CEEEE--Ee----CCEEEEECCCCCHHHHHHHHHHHHHhhc
Confidence 78899999999999999999999999999999999988 77776 42 5789999999999999999999999999
Q ss_pred heeeeccceEEEEEEEEEEecceeEEccCCCeEEEEcccCceeeEEEecCCCeEEEecCCCCcEEEEEecCHhHHHHHHH
Q 029415 83 LITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAA 162 (194)
Q Consensus 83 mI~GVt~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~gv~v~~~~~~k~~I~i~GiDkq~Vgq~AA 162 (194)
||+|||+||+++|+++|+|| ||++ +|+.|+| +||||||+.++||+||+++++++ |+|+|+|+|||+||||||
T Consensus 75 mI~GVt~Gf~kkL~lvGvGY--ra~~--~G~~l~l--~LG~Shpv~~~iP~gI~v~v~~~--t~I~l~G~DKq~Vgq~AA 146 (185)
T 2zjr_E 75 AVKGVSDGYTINLELRGVGF--RAKL--TGKALEM--NIGYSHPVIIEPPAGVTFAVPEP--TRIDVSGIDKQLVGQVAA 146 (185)
T ss_dssp HHHHHHHCEEEEEECBSTTC--CCCC--BTTBCBC--CSSCSSCCBCCCCTTEEEECSST--TEEEEEESSHHHHHHHHH
T ss_pred EEeeeccCcEEEEEEeeecc--EEEE--cCCEEEE--EeeCCccEEEECCCCeEEEECCC--CEEEEEecCHHHHHHHHH
Confidence 99999999999999999999 6888 6999999 99999999999999999999997 899999999999999999
Q ss_pred HHhcccc---cCCCceeeeeceEEEeee
Q 029415 163 LINQKCH---VKNKDIRKFLDGIYVSEK 187 (194)
Q Consensus 163 ~Ir~~~~---~Kgkd~R~f~DGiyv~~k 187 (194)
+||+||+ |||||+| ..|-+|--|
T Consensus 147 ~Ir~~R~PepYKGKGI~--y~~E~i~~K 172 (185)
T 2zjr_E 147 NVRKVRKPDAYHGKGVR--FVGEQIALK 172 (185)
T ss_dssp HHHHHTCCCTTTCCBCC--CSSCCCCCC
T ss_pred HHhccCCCCCcCCCcEe--ECCeEEEEc
Confidence 9999996 9999998 344455443
No 13
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=99.95 E-value=4.4e-29 Score=186.16 Aligned_cols=91 Identities=46% Similarity=0.851 Sum_probs=80.5
Q ss_pred CceeeeeeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEcccCccCCcEEEEEecCCChhhhhhHHHHHHHH
Q 029415 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHV 80 (194)
Q Consensus 1 m~~~~~~~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli 80 (194)
|+++..++||.||+||+|+++++.|+|+||+|+|+++|+|..|++.++.. ..+.|.|++|+++|+++|+|||+||||
T Consensus 8 Mk~i~~k~pI~IP~gV~V~i~~~~VtVKGPkG~L~~~~~h~~v~i~~e~~---~~~~i~v~~~~~~k~~ra~~Gt~RslI 84 (100)
T 2cql_A 8 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGK---KKKRLRVDKWWGNRKELATVRTICSHV 84 (100)
T ss_dssp CCCCCCCEEECCCSSCEEEEETTEEEEEETTEEEEEECCSSCCEEEEECS---SSCEEEEECCSSSTHHHHHHHHHHHHH
T ss_pred cccccccCcEEcCCCCEEEEeCCEEEEECCCceEEEEeccCcEEEEEcCC---ceeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 77888899999999999999999999999999999999965788874321 123499999999999999999999999
Q ss_pred hhheeeeccceEEE
Q 029415 81 QNLITGVTKGYRYK 94 (194)
Q Consensus 81 ~NmI~GVt~Gf~~~ 94 (194)
+|||+|||+||+|.
T Consensus 85 ~NMI~GVt~Gf~y~ 98 (100)
T 2cql_A 85 QNMIKGVTLGSGPS 98 (100)
T ss_dssp HHHHHHHHTSCCSC
T ss_pred HhhhEeecCCEEEc
Confidence 99999999999874
No 14
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=76.94 E-value=1.9 Score=31.09 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=19.5
Q ss_pred EEecCCCeEEEecCCCCcEEEEEecC
Q 029415 128 RVEMLDGVTVLRSDKVKDELILDGND 153 (194)
Q Consensus 128 ~~~iP~gv~v~~~~~~k~~I~i~GiD 153 (194)
.++||+||+|++.+ +.|+++|.-
T Consensus 16 pI~IP~gV~V~i~~---~~VtVKGPk 38 (100)
T 2cql_A 16 TVDIPENVDITLKG---RTVIVKGPR 38 (100)
T ss_dssp EECCCSSCEEEEET---TEEEEEETT
T ss_pred cEEcCCCCEEEEeC---CEEEEECCC
Confidence 46889999999987 689999975
No 15
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=74.82 E-value=14 Score=31.73 Aligned_cols=46 Identities=15% Similarity=0.266 Sum_probs=32.2
Q ss_pred CCCcEEEEeCcEEEEEcCC----------cEEEEEec--C-C---cEEEEEcccCccCCcEEEEEec
Q 029415 13 PEGVKVKINAKIIEVEGPR----------GKLSRNFK--H-L---NLDFHLMTDGETGKRKLKIDAW 63 (194)
Q Consensus 13 P~~V~v~i~~~~v~vkGp~----------G~l~~~~~--~-~---~i~i~~~~~~~~~~~~l~v~~~ 63 (194)
|+.++|++.++.|+|+|-+ |+.++.|. . . .++..+. .++.|.|+..
T Consensus 125 ~edI~V~v~~~~L~I~ge~~~~~e~~r~~g~F~R~~~LP~~Vd~e~i~A~~~-----~nGVL~I~lP 186 (314)
T 2bol_A 125 AEEITIKADKNKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATIT-----TDDVLVIEAP 186 (314)
T ss_dssp TTTEEEEEETTEEEEEECCBSSTTCCCBCCCEEEEEECCTTBCGGGCEEEEC-----SSSEEEEEEE
T ss_pred hHHeEEEEECCEEEEEEEEeccCCCCEEEEEEEEEEECCCCccccccEEEEe-----CCCEEEEEEe
Confidence 5899999999999999976 55666554 2 1 2455543 1588888754
No 16
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=60.05 E-value=7.5 Score=30.98 Aligned_cols=22 Identities=41% Similarity=0.508 Sum_probs=13.3
Q ss_pred eEEcCCCcEEEEeCcEEEEEcC
Q 029415 9 TMEIPEGVKVKINAKIIEVEGP 30 (194)
Q Consensus 9 ~I~IP~~V~v~i~~~~v~vkGp 30 (194)
.+++|+||++++.++.|+++|.
T Consensus 121 ~~~ip~gv~v~v~~~~Iil~G~ 142 (184)
T 3j21_F 121 KAKILPGVTVKVRGQEIIVEGI 142 (184)
T ss_dssp EEECCTTEEEEEETTEEEEEES
T ss_pred EEECCCCeEEEecCCEEEEEEC
Confidence 3556777777765555555553
No 17
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=57.31 E-value=9.1 Score=30.38 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=15.7
Q ss_pred eEEcCCCcEEEEeCcEEEEEcC
Q 029415 9 TMEIPEGVKVKINAKIIEVEGP 30 (194)
Q Consensus 9 ~I~IP~~V~v~i~~~~v~vkGp 30 (194)
.+++|+||++++.+..|+++|.
T Consensus 116 ~~~ip~gi~v~v~~~~I~v~G~ 137 (178)
T 1vq8_E 116 RTTIHGDTDVEIDGEELTVSGP 137 (178)
T ss_dssp EEECCTTCEEEEETTEEEEEES
T ss_pred EEeCCCCeEEEEeCCEEEEEEC
Confidence 4577888888876666666664
No 18
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=55.67 E-value=9.4 Score=30.20 Aligned_cols=20 Identities=30% Similarity=0.541 Sum_probs=11.3
Q ss_pred EecCCCeEEEecCCCCcEEEEEe
Q 029415 129 VEMLDGVTVLRSDKVKDELILDG 151 (194)
Q Consensus 129 ~~iP~gv~v~~~~~~k~~I~i~G 151 (194)
+.||+||+|++.+ +.++++|
T Consensus 8 I~IP~gV~V~i~~---~~VtVkG 27 (177)
T 1rl6_A 8 IEIPAGVTVTVNG---NTVTVKG 27 (177)
T ss_dssp EECCTTCEEEEET---TEEEEEE
T ss_pred eEcCCCCEEEEeC---CEEEEEC
Confidence 4566666666654 3455555
No 19
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H
Probab=54.70 E-value=12 Score=29.99 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=12.6
Q ss_pred EEecCCCeEEEecCCCCcEEEEEec
Q 029415 128 RVEMLDGVTVLRSDKVKDELILDGN 152 (194)
Q Consensus 128 ~~~iP~gv~v~~~~~~k~~I~i~Gi 152 (194)
.++||+||+|++.+ ..++++|.
T Consensus 9 ~I~IP~gV~v~i~~---~~V~VkGP 30 (191)
T 3u5e_H 9 QIEVPEGVTVSIKS---RIVKVVGP 30 (191)
T ss_dssp EEECCTTCEEEEET---TEEEEEET
T ss_pred cEECCCCcEEEEeC---CEEEEEcC
Confidence 45667777666654 34555554
No 20
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_F
Probab=54.36 E-value=12 Score=29.91 Aligned_cols=13 Identities=38% Similarity=0.544 Sum_probs=6.7
Q ss_pred EecCCCeEEEecC
Q 029415 129 VEMLDGVTVLRSD 141 (194)
Q Consensus 129 ~~iP~gv~v~~~~ 141 (194)
++||+||+|++.+
T Consensus 10 I~IP~gV~v~i~~ 22 (190)
T 3iz5_F 10 MEIPEGVTVQVAA 22 (190)
T ss_dssp EECCTTCEEEEET
T ss_pred EECCCCCEEEEeC
Confidence 4555555555443
No 21
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=52.92 E-value=10 Score=30.08 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=11.2
Q ss_pred EecCCCeEEEecCCCCcEEEEEe
Q 029415 129 VEMLDGVTVLRSDKVKDELILDG 151 (194)
Q Consensus 129 ~~iP~gv~v~~~~~~k~~I~i~G 151 (194)
++||+||+|++.+ ..++++|
T Consensus 9 I~IP~gV~v~i~~---~~v~VkG 28 (180)
T 3v2d_H 9 IPVPKGVSVEVAP---GRVKVKG 28 (180)
T ss_dssp EECCTTCEEEEET---TEEEEEC
T ss_pred eeCCCCcEEEEeC---CEEEEEe
Confidence 4566777666654 3444444
No 22
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=51.85 E-value=8.6 Score=30.83 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=12.3
Q ss_pred EecCCCeEEEecCCCCcEEEEEec
Q 029415 129 VEMLDGVTVLRSDKVKDELILDGN 152 (194)
Q Consensus 129 ~~iP~gv~v~~~~~~k~~I~i~Gi 152 (194)
++||+||+|++.+ +.++++|.
T Consensus 10 I~IP~gV~V~i~~---~~VtVkGp 30 (192)
T 2zkr_e 10 VDIPENVDITLKG---RTVIVKGP 30 (192)
T ss_dssp CCCCTTCEEEEET---TEEEEEET
T ss_pred EEcCCCCEEEEeC---CEEEEECC
Confidence 4667777766654 44555553
No 23
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=49.87 E-value=11 Score=30.79 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=11.0
Q ss_pred EEecCCCeEEEecCCCCcEEEEEe
Q 029415 128 RVEMLDGVTVLRSDKVKDELILDG 151 (194)
Q Consensus 128 ~~~iP~gv~v~~~~~~k~~I~i~G 151 (194)
.+.||+||+|++.+ +.|+++|
T Consensus 35 pI~IP~gV~V~i~~---~~VtVKG 55 (212)
T 1nkw_E 35 PIAVPSGVTVNAQD---GVFKVKG 55 (212)
T ss_pred ceecCCCcEEEEeC---CEEEEEC
Confidence 34556666665544 3444444
No 24
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E
Probab=48.87 E-value=12 Score=29.82 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=11.4
Q ss_pred EEecCCCeEEEecCCCCcEEEEEec
Q 029415 128 RVEMLDGVTVLRSDKVKDELILDGN 152 (194)
Q Consensus 128 ~~~iP~gv~v~~~~~~k~~I~i~Gi 152 (194)
.++||+||+|++.+ ..++++|.
T Consensus 9 ~I~IP~gV~v~i~~---~~V~VkGP 30 (188)
T 4a17_E 9 NVPIPDKVTITAKQ---RVVEVKGP 30 (188)
T ss_dssp ECCCCTTCEEEEET---TEEEEEET
T ss_pred cEECCCCcEEEEeC---CEEEEEcC
Confidence 34566666665544 34444443
No 25
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Probab=43.63 E-value=71 Score=21.71 Aligned_cols=18 Identities=22% Similarity=0.663 Sum_probs=15.9
Q ss_pred CCCcEEEEeCcEEEEEcC
Q 029415 13 PEGVKVKINAKIIEVEGP 30 (194)
Q Consensus 13 P~~V~v~i~~~~v~vkGp 30 (194)
|++++|+++++.++|+|-
T Consensus 27 ~edi~v~~~~~~L~I~g~ 44 (100)
T 3gla_A 27 PSQIEVQMDKGILSIRGE 44 (100)
T ss_dssp GGGCEEEEETTEEEEEEE
T ss_pred HHHEEEEEECCEEEEEEE
Confidence 378999999999999984
No 26
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=39.95 E-value=10 Score=31.17 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=16.2
Q ss_pred EEecCCCeEEEecCCCCcEEEEEecC
Q 029415 128 RVEMLDGVTVLRSDKVKDELILDGND 153 (194)
Q Consensus 128 ~~~iP~gv~v~~~~~~k~~I~i~GiD 153 (194)
.++||+||+|++.+ +.++++|.-
T Consensus 50 pI~IP~gV~V~i~~---~~VtVKGPk 72 (223)
T 3bbo_I 50 PIAVPSNVTIALEG---QDLKVKGPL 72 (223)
T ss_dssp CCCCSTTSCEEESS---SEEEECCSS
T ss_pred ceecCCCCEEEEeC---CEEEEECCC
Confidence 35778888888765 567777753
No 27
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Probab=39.64 E-value=9.9 Score=30.01 Aligned_cols=14 Identities=21% Similarity=0.221 Sum_probs=9.6
Q ss_pred HhHHHHHHHHHhcc
Q 029415 154 IELVSRSAALINQK 167 (194)
Q Consensus 154 kq~Vgq~AA~Ir~~ 167 (194)
+..+|-++|.|.+.
T Consensus 61 ~a~~gt~rsli~Nm 74 (176)
T 3r8s_G 61 WAQAGTARALLNSM 74 (176)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhH
Confidence 35677777777775
No 28
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H
Probab=39.59 E-value=13 Score=29.53 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=16.9
Q ss_pred eEEcCCCcEEEEeCc-EEEEEcCC
Q 029415 9 TMEIPEGVKVKINAK-IIEVEGPR 31 (194)
Q Consensus 9 ~I~IP~~V~v~i~~~-~v~vkGp~ 31 (194)
.++||+||++++.++ .|+++|..
T Consensus 114 ~~~iP~gI~v~v~~~t~I~l~G~D 137 (185)
T 2zjr_E 114 IIEPPAGVTFAVPEPTRIDVSGID 137 (185)
T ss_dssp BCCCCTTEEEECSSTTEEEEEESS
T ss_pred EEECCCCeEEEECCCCEEEEEecC
Confidence 457789998888654 77777754
No 29
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A
Probab=39.43 E-value=71 Score=23.99 Aligned_cols=18 Identities=11% Similarity=0.259 Sum_probs=15.8
Q ss_pred CCCcEEEEeCcEEEEEcC
Q 029415 13 PEGVKVKINAKIIEVEGP 30 (194)
Q Consensus 13 P~~V~v~i~~~~v~vkGp 30 (194)
|++++|+++++.|+|+|-
T Consensus 79 ~edi~V~~~~~~L~I~g~ 96 (161)
T 4eld_A 79 KEDIILNAVGDTLEIRAK 96 (161)
T ss_dssp GGGEEEEEETTEEEEEEE
T ss_pred hHhEEEEEECCEEEEEEE
Confidence 378999999999999983
No 30
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=36.95 E-value=21 Score=24.15 Aligned_cols=18 Identities=28% Similarity=0.660 Sum_probs=15.3
Q ss_pred CCCcEEEEeCcEEEEEcC
Q 029415 13 PEGVKVKINAKIIEVEGP 30 (194)
Q Consensus 13 P~~V~v~i~~~~v~vkGp 30 (194)
|+.++|++.++.++|+|-
T Consensus 20 ~edi~V~v~~~~L~I~g~ 37 (85)
T 3q9p_A 20 PDELTVKTKDGVVEITGK 37 (85)
T ss_dssp CSEEEEEEETTEEEEEEE
T ss_pred hHHEEEEEECCEEEEEEE
Confidence 578889999999999885
No 31
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=35.32 E-value=16 Score=26.33 Aligned_cols=17 Identities=18% Similarity=0.217 Sum_probs=14.9
Q ss_pred CHhHHHHHHHHHhcccc
Q 029415 153 DIELVSRSAALINQKCH 169 (194)
Q Consensus 153 Dkq~Vgq~AA~Ir~~~~ 169 (194)
+.+.+.||||.||+||-
T Consensus 30 ~~~ElqqFA~Llr~YR~ 46 (98)
T 4fqn_A 30 SSQEIQQFAALLHEYRN 46 (98)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHc
Confidence 46789999999999985
No 32
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}
Probab=34.80 E-value=27 Score=24.33 Aligned_cols=45 Identities=16% Similarity=0.160 Sum_probs=30.4
Q ss_pred CCCcEEEEeCcEEEEEcCC-------------cEEEEEecCC------cEEEEEcccCccCCcEEEEEec
Q 029415 13 PEGVKVKINAKIIEVEGPR-------------GKLSRNFKHL------NLDFHLMTDGETGKRKLKIDAW 63 (194)
Q Consensus 13 P~~V~v~i~~~~v~vkGp~-------------G~l~~~~~~~------~i~i~~~~~~~~~~~~l~v~~~ 63 (194)
|++++|+++++.++|+|-+ |+..+.|.-+ .++..+. ++.|.|...
T Consensus 29 ~edi~v~~~~~~L~I~g~~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~i~A~~~------~GvL~I~lp 92 (102)
T 4fei_A 29 AGTLALAEDGGQLTVSGERPGTEHLLRSERPSGRFVRELAFPEPVRPASGVASLA------GGVLTVRFE 92 (102)
T ss_dssp GGGCEEEEETTEEEEEEEECCCSSCSSCCSEEEEEEEEEECSSCBCTTCCEEEEE------TTEEEEEEE
T ss_pred hHhEEEEEECCEEEEEEEEecCCCEEEEEEeccEEEEEEECCCCcchhHcEEEEE------CCEEEEEEE
Confidence 3689999999999999844 6666665421 2444532 477777643
No 33
>3j20_L 30S ribosomal protein S10P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.99 E-value=44 Score=23.83 Aligned_cols=31 Identities=10% Similarity=0.167 Sum_probs=26.3
Q ss_pred cEEEEEecCHhHHHHHHHHHhcccccCCCce
Q 029415 145 DELILDGNDIELVSRSAALINQKCHVKNKDI 175 (194)
Q Consensus 145 ~~I~i~GiDkq~Vgq~AA~Ir~~~~~Kgkd~ 175 (194)
-+|.|+|.|...|-++|+.|....+.+|-.+
T Consensus 4 irI~LkS~d~~~Ld~~~~~i~~~ak~~g~~v 34 (102)
T 3j20_L 4 ARIKIASTNVRSLDEVANQIKQIAERTGVRM 34 (102)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHSSSCEE
T ss_pred EEEEEEECCHHHHHHHHHHHHHHHHHhCCcc
Confidence 5899999999999999999999876655443
No 34
>3d3c_J 30S ribosomal protein S10, N utilization substance protein B; NUSB, NUSE, phage lambda, lambda N antitermination antitermination; 2.60A {Escherichia coli} PDB: 2kvq_E 3d3b_J* 3imq_J
Probab=29.38 E-value=43 Score=23.26 Aligned_cols=30 Identities=17% Similarity=0.199 Sum_probs=25.2
Q ss_pred CcEEEEEecCHhHHHHHHHHHhcccccCCC
Q 029415 144 KDELILDGNDIELVSRSAALINQKCHVKNK 173 (194)
Q Consensus 144 k~~I~i~GiDkq~Vgq~AA~Ir~~~~~Kgk 173 (194)
+-+|.|+|-|...+-++|++|...-+.+|-
T Consensus 10 kirI~L~S~d~~~Ld~~~~~Iv~~ak~~g~ 39 (87)
T 3d3c_J 10 RIRIRLKAFDHRLIDQATAEIVETAKRTGA 39 (87)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEEEEECCHHHHHHHHHHHHHHHHHhCC
Confidence 368999999999999999999987654443
No 35
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=28.96 E-value=28 Score=25.02 Aligned_cols=28 Identities=29% Similarity=0.253 Sum_probs=20.9
Q ss_pred cCHhHHHHHHHHHhcccccCCCceeeeec
Q 029415 152 NDIELVSRSAALINQKCHVKNKDIRKFLD 180 (194)
Q Consensus 152 iDkq~Vgq~AA~Ir~~~~~Kgkd~R~f~D 180 (194)
.|||.+-+.| +=++.-.|||+-+|-+.|
T Consensus 73 ~~KErILkaa-r~k~~vtykg~pirlsaD 100 (100)
T 2w7a_A 73 EMKEKMLRAA-REKGRVTLKGKPIRLTVD 100 (100)
T ss_dssp HHHHHHHHHH-HHHCCEEETTEEEEEEEC
T ss_pred ccHHHHHHHH-HHhCceeeCCcceeecCC
Confidence 4688888744 434446799999999887
No 36
>3r8n_J 30S ribosomal protein S10; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_J 3fih_J* 3j18_J* 2wwl_J 3oar_J 3oaq_J 3ofb_J 3ofa_J 3ofp_J 3ofx_J 3ofy_J 3ofo_J 3r8o_J 4a2i_J 4gd1_J 4gd2_J 3i1m_J 1p6g_J 1p87_J* 1vs7_J* ...
Probab=27.65 E-value=28 Score=24.50 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=23.5
Q ss_pred EEEEEecCHhHHHHHHHHHhcccccCC
Q 029415 146 ELILDGNDIELVSRSAALINQKCHVKN 172 (194)
Q Consensus 146 ~I~i~GiDkq~Vgq~AA~Ir~~~~~Kg 172 (194)
+|.|+|-|...|-++|+.|...++.+|
T Consensus 3 rI~L~s~d~~~Ld~~~~~i~~~ak~~g 29 (98)
T 3r8n_J 3 RIRLKAFDHRLIDQATAEIVETAKRTG 29 (98)
T ss_dssp CCEEEBSCHHHHHHHHHHHHHHHHHSS
T ss_pred EEEEEECCHHHHHHHHHHHHHHHHHhC
Confidence 588999999999999999999876444
No 37
>3r2c_J Protein NUSE, 30S ribosomal protein S10; cross species NUSB-NUSE-RNA interaction; HET: PEG; 1.90A {Aquifex aeolicus} PDB: 3r2d_J
Probab=27.34 E-value=56 Score=22.51 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=24.5
Q ss_pred CcEEEEEecCHhHHHHHHHHHhcccccCC
Q 029415 144 KDELILDGNDIELVSRSAALINQKCHVKN 172 (194)
Q Consensus 144 k~~I~i~GiDkq~Vgq~AA~Ir~~~~~Kg 172 (194)
+-+|.|++-|...|-++|++|-..-+.+|
T Consensus 5 kiRI~L~S~d~~~Ld~~~~~Iv~~ak~~g 33 (83)
T 3r2c_J 5 KIRIKLRAYDHRLLDQSVKQIIETVKRTG 33 (83)
T ss_dssp CEEEEEEESCHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEEEECCHHHHHHHHHHHHHHHHHhC
Confidence 36899999999999999999998765444
No 38
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Probab=27.23 E-value=31 Score=23.42 Aligned_cols=19 Identities=47% Similarity=0.775 Sum_probs=16.2
Q ss_pred CCCcEEEEeCcEEEEEcCC
Q 029415 13 PEGVKVKINAKIIEVEGPR 31 (194)
Q Consensus 13 P~~V~v~i~~~~v~vkGp~ 31 (194)
|+.++|++.++.++|+|-+
T Consensus 19 ~edi~V~v~~~~L~I~g~~ 37 (90)
T 2y1y_A 19 PEELKVKVLGDVIEVHGKH 37 (90)
T ss_dssp GGGEEEEEETTEEEEEEEE
T ss_pred HHHeEEEEECCEEEEEEEE
Confidence 3678999999999999964
No 39
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=25.56 E-value=1.1e+02 Score=21.38 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=23.3
Q ss_pred CeEEEecCCCCcEEEEEecCHhHHHHHHHHHhcc
Q 029415 134 GVTVLRSDKVKDELILDGNDIELVSRSAALINQK 167 (194)
Q Consensus 134 gv~v~~~~~~k~~I~i~GiDkq~Vgq~AA~Ir~~ 167 (194)
++.+..|+. .+.|+|+|. ++.|....+.|+..
T Consensus 58 ~v~I~fp~~-~~~ItI~G~-~~~V~~a~~~I~~~ 89 (102)
T 2ctf_A 58 KVHIEFTEG-EDKITLEGP-TEDVSVAQEQIEGM 89 (102)
T ss_dssp SSEEEECSS-SCEEEEEEC-HHHHHHHHHHHHHH
T ss_pred CcEEEeCCC-CCEEEEECC-HHHHHHHHHHHHHH
Confidence 344444432 278999999 99999988888765
No 40
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}
Probab=24.63 E-value=37 Score=23.67 Aligned_cols=20 Identities=30% Similarity=0.498 Sum_probs=16.7
Q ss_pred CCCcEEEEeCcEEEEEcCCc
Q 029415 13 PEGVKVKINAKIIEVEGPRG 32 (194)
Q Consensus 13 P~~V~v~i~~~~v~vkGp~G 32 (194)
|+.++|++.++.++|+|-+.
T Consensus 24 ~edI~V~v~~~~L~I~g~~~ 43 (101)
T 2wj5_A 24 PEEISVKVVGDHVEVHARHE 43 (101)
T ss_dssp GGGEEEEEETTEEEEEEEEE
T ss_pred HHHeEEEEECCEEEEEEEEe
Confidence 36889999999999999763
No 41
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=24.54 E-value=27 Score=23.30 Aligned_cols=25 Identities=16% Similarity=0.466 Sum_probs=20.7
Q ss_pred CCcEEEEeCcEEEEEcCCcEEEEEe
Q 029415 14 EGVKVKINAKIIEVEGPRGKLSRNF 38 (194)
Q Consensus 14 ~~V~v~i~~~~v~vkGp~G~l~~~~ 38 (194)
.||++.++++.+.++.|+|.+.-.+
T Consensus 17 ~gi~l~~eg~kLr~~ap~g~l~~~l 41 (78)
T 2jug_A 17 LGVRLWVEGERLRFQAPPGVMTPEL 41 (78)
T ss_dssp HTCEEEEETTEEEEECCTTTTCHHH
T ss_pred cCCEEEEECCEeeeecCccccCHHH
Confidence 4788999999999999999887433
No 42
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Probab=24.53 E-value=37 Score=23.93 Aligned_cols=19 Identities=32% Similarity=0.735 Sum_probs=16.5
Q ss_pred CCCcEEEEeCcEEEEEcCC
Q 029415 13 PEGVKVKINAKIIEVEGPR 31 (194)
Q Consensus 13 P~~V~v~i~~~~v~vkGp~ 31 (194)
|+.++|++.++.|+|+|..
T Consensus 25 ~edi~V~v~~~~L~I~g~~ 43 (106)
T 3l1e_A 25 PEDLTVKVQEDFVEIHGKH 43 (106)
T ss_dssp GGGEEEEEETTEEEEEEEE
T ss_pred hHHEEEEEECCEEEEEEEE
Confidence 5789999999999999953
No 43
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=23.51 E-value=1e+02 Score=20.47 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=17.3
Q ss_pred EEEEEecCHhHHHHHHHHHhcc
Q 029415 146 ELILDGNDIELVSRSAALINQK 167 (194)
Q Consensus 146 ~I~i~GiDkq~Vgq~AA~Ir~~ 167 (194)
.+.|+| |.+.+-.....|+.+
T Consensus 62 ~v~I~G-~~~~v~~A~~~I~~i 82 (85)
T 2opv_A 62 PLRIIG-DPYKVQQACEMVMDI 82 (85)
T ss_dssp EEEEEE-CHHHHHHHHHHHHHH
T ss_pred EEEEEe-CHHHHHHHHHHHHHH
Confidence 399999 999998887777764
No 44
>3u5c_U 40S ribosomal protein S20; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_J 3o30_N 3o2z_N 3u5g_U 1s1h_J 3jyv_J*
Probab=21.06 E-value=85 Score=23.10 Aligned_cols=31 Identities=10% Similarity=0.090 Sum_probs=26.0
Q ss_pred cEEEEEecCHhHHHHHHHHHhcccccCCCce
Q 029415 145 DELILDGNDIELVSRSAALINQKCHVKNKDI 175 (194)
Q Consensus 145 ~~I~i~GiDkq~Vgq~AA~Ir~~~~~Kgkd~ 175 (194)
-+|.|+|-|...|-++|+.|-...+.+|-.+
T Consensus 22 IrI~LkS~d~~~Ld~~~~~I~~~ak~~g~~v 52 (121)
T 3u5c_U 22 IRITLTSTKVKQLENVSSNIVKNAEQHNLVK 52 (121)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHHHHTCCCE
T ss_pred EEEEEEECCHHHHHHHHHHHHHHHHHhCCee
Confidence 5899999999999999999998876555443
No 45
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=20.29 E-value=98 Score=21.45 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=23.8
Q ss_pred CeEEEecCCC--CcEEEEEecCHhHHHHHHHHHhccc
Q 029415 134 GVTVLRSDKV--KDELILDGNDIELVSRSAALINQKC 168 (194)
Q Consensus 134 gv~v~~~~~~--k~~I~i~GiDkq~Vgq~AA~Ir~~~ 168 (194)
|+++.++.+. .+.+.|+|.+. .|-+.-+.|+.+.
T Consensus 48 gv~I~i~~~g~~~~~V~I~G~~~-~v~~A~~~I~~iv 83 (95)
T 2ctj_A 48 GVHIHFPVEGSGSDTVVIRGPSS-DVEKAKKQLLHLA 83 (95)
T ss_dssp SCEEECCCTTTTCCEEEEESCHH-HHHHHHHHHHHHH
T ss_pred CCEEEeCCCCCCcceEEEEcCHH-HHHHHHHHHHHHH
Confidence 4455554431 14899999988 8888888888764
Done!