Query 029415
Match_columns 194
No_of_seqs 147 out of 1036
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 20:39:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029415.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029415hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vqoe2 d.141.1.1 (E:80-172) R 100.0 1.2E-37 8.8E-42 225.9 10.3 93 91-188 1-93 (93)
2 d1rl6a2 d.141.1.1 (A:82-170) R 100.0 1.7E-30 1.2E-34 188.0 8.7 78 91-176 1-81 (89)
3 d2j01h2 d.141.1.1 (H:83-171) R 100.0 5.2E-31 3.8E-35 190.6 3.9 78 91-176 1-81 (89)
4 d2zjre1 d.141.1.1 (E:83-172) R 100.0 3.5E-31 2.6E-35 191.9 2.4 78 91-176 1-81 (90)
5 d2qamg2 d.141.1.1 (G:82-176) R 100.0 3.3E-31 2.4E-35 193.7 -1.1 87 91-187 1-90 (95)
6 d2cqla1 d.141.1.1 (A:1-87) Rib 99.9 7.1E-28 5.2E-32 173.4 9.1 87 1-90 1-87 (87)
7 d1vqoe1 d.141.1.1 (E:1-79) Rib 99.9 5.7E-26 4.1E-30 160.7 9.3 78 7-90 2-79 (79)
8 d1rl6a1 d.141.1.1 (A:7-81) Rib 99.9 4.9E-26 3.6E-30 159.7 8.5 75 9-90 1-75 (75)
9 d2qamg1 d.141.1.1 (G:1-81) Rib 99.9 3.5E-27 2.6E-31 167.9 1.0 81 3-90 1-81 (81)
10 d2zjre2 d.141.1.1 (E:5-82) Rib 99.9 8.2E-27 5.9E-31 164.8 -2.4 78 6-90 1-78 (78)
11 d2j01h1 d.141.1.1 (H:12-82) Ri 99.9 3.4E-24 2.5E-28 148.6 1.1 71 13-90 1-71 (71)
12 d2cqla1 d.141.1.1 (A:1-87) Rib 81.4 0.69 5E-05 30.6 3.7 26 127-155 8-33 (87)
13 d1rl6a1 d.141.1.1 (A:7-81) Rib 81.3 0.66 4.8E-05 30.0 3.5 22 129-153 2-23 (75)
14 d1vqoe2 d.141.1.1 (E:80-172) R 78.5 1.1 8.1E-05 30.5 4.0 14 71-84 60-73 (93)
15 d1vqoe1 d.141.1.1 (E:1-79) Rib 78.1 1 7.5E-05 29.2 3.6 25 128-155 4-28 (79)
16 d2zjre2 d.141.1.1 (E:5-82) Rib 62.9 0.81 5.9E-05 29.7 0.3 24 129-155 5-28 (78)
17 d2j01h1 d.141.1.1 (H:12-82) Ri 49.3 5.1 0.00037 25.1 2.5 21 132-155 1-21 (71)
18 d1rl6a2 d.141.1.1 (A:82-170) R 47.7 6.8 0.0005 26.0 3.0 11 10-20 33-43 (89)
19 d1shsa_ b.15.1.1 (A:) Small he 43.1 30 0.0022 22.6 6.1 43 96-152 4-50 (115)
20 d1pbya3 b.1.18.14 (A:274-351) 38.3 25 0.0018 22.6 4.6 40 89-151 15-54 (78)
21 d2qalj1 d.58.15.1 (J:5-102) Ri 34.4 16 0.0012 24.1 3.4 31 145-175 2-32 (98)
22 d2uubj1 d.58.15.1 (J:3-100) Ri 33.8 17 0.0013 23.9 3.4 31 145-175 2-32 (98)
23 d1ttea1 a.5.2.1 (A:161-215) Ub 27.5 9.4 0.00068 23.2 0.9 27 148-174 4-39 (55)
24 d2z0sa2 d.51.1.1 (A:148-234) E 23.0 47 0.0034 21.4 4.0 34 134-169 31-64 (87)
25 d2cpqa1 d.51.1.1 (A:212-289) F 22.5 71 0.0052 19.7 4.8 35 134-168 38-72 (78)
No 1
>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=100.00 E-value=1.2e-37 Score=225.87 Aligned_cols=93 Identities=38% Similarity=0.683 Sum_probs=90.6
Q ss_pred eEEEEEEEEEEecceeEEccCCCeEEEEcccCceeeEEEecCCCeEEEecCCCCcEEEEEecCHhHHHHHHHHHhccccc
Q 029415 91 YRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHV 170 (194)
Q Consensus 91 f~~~L~lvGvGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~gv~v~~~~~~k~~I~i~GiDkq~Vgq~AA~Ir~~~~~ 170 (194)
|+|+|+++++||||.+.+ +|+.++++||||+++|+.++||+|++|++.+ ++|+|+|+|+|+|||+||+|+++|++
T Consensus 1 f~Ykmk~vyaHFPi~v~v--~g~~v~I~NFlGEK~~R~~~i~~gv~v~v~~---deiiv~G~d~E~V~qtAA~Ieq~t~v 75 (93)
T d1vqoe2 1 WEYGMEVFYSHFPMQVNV--EGDEVVIENFLGEKAPRRTTIHGDTDVEIDG---EELTVSGPDIEAVGQTAADIEQLTRI 75 (93)
T ss_dssp EEEEEEEECSSSCCEEEE--ETTEEEEESGGGCSSCEEEECCTTCEEEEET---TEEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred CEEEEEEEEEeCCeEEEE--cCCEEEEEeccCCceeEEEEecCCCeeEEcC---CEEEEEcCCHHHHHHHHHHHHHhhcc
Confidence 899999999999999999 6999999999999999999999999999986 79999999999999999999999999
Q ss_pred CCCceeeeeceEEEeeee
Q 029415 171 KNKDIRKFLDGIYVSEKG 188 (194)
Q Consensus 171 Kgkd~R~f~DGiyv~~k~ 188 (194)
|+||+|+|||||||+||+
T Consensus 76 k~kD~R~FlDGIYv~eKp 93 (93)
T d1vqoe2 76 NDKDVRVFQDGVYITRKP 93 (93)
T ss_dssp SSSCTTTCCCEEEEEECC
T ss_pred CCCCccEeecCEEEEecC
Confidence 999999999999999986
No 2
>d1rl6a2 d.141.1.1 (A:82-170) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.96 E-value=1.7e-30 Score=188.00 Aligned_cols=78 Identities=24% Similarity=0.315 Sum_probs=75.2
Q ss_pred eEEEEEEEEEEecceeEEccCCCeEEEEcccCceeeEEEecCCCeEEEecCCCCcEEEEEecCHhHHHHHHHHHhcccc-
Q 029415 91 YRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCH- 169 (194)
Q Consensus 91 f~~~L~lvGvGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~gv~v~~~~~~k~~I~i~GiDkq~Vgq~AA~Ir~~~~- 169 (194)
|+++|+++|||| ||++ +|+.|.| +||||||+.+++|+||+++++++ |.|+|+|+|||.||||||.||++|+
T Consensus 1 f~k~L~lvGVGY--ra~~--~g~~L~l--~LGySH~I~~~iP~~i~v~~~~~--t~i~i~g~dKq~vg~~aa~Ir~~r~p 72 (89)
T d1rl6a2 1 YEKALELVGVGY--RASK--QGKKLVL--SVGYSHPVEIEPEEGLEIEVPSQ--TKIIVKGADKQRVGELAANIRAVRPP 72 (89)
T ss_dssp EEEEEEEESTTC--EEEE--ETTEEEE--ESSSSSCEEECCCTTEEEEEEET--TEEEEEESCHHHHHHHHHHHHTTSCC
T ss_pred CeEEEEEEEEEE--EEEe--cCCEEEE--EEeecceEEEeCCCCcEEEecCC--ceeEEEEcCHHHHHHHHHHHhhcCCC
Confidence 899999999999 8999 6899999 99999999999999999999998 9999999999999999999999996
Q ss_pred --cCCCcee
Q 029415 170 --VKNKDIR 176 (194)
Q Consensus 170 --~Kgkd~R 176 (194)
|||||+|
T Consensus 73 epYKGKGI~ 81 (89)
T d1rl6a2 73 EPYKGKGIR 81 (89)
T ss_dssp CTTTCCEEE
T ss_pred CCcCCCCEe
Confidence 9999887
No 3
>d2j01h2 d.141.1.1 (H:83-171) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]}
Probab=99.96 E-value=5.2e-31 Score=190.59 Aligned_cols=78 Identities=21% Similarity=0.244 Sum_probs=75.4
Q ss_pred eEEEEEEEEEEecceeEEccCCCeEEEEcccCceeeEEEecCCCeEEEecCCCCcEEEEEecCHhHHHHHHHHHhcccc-
Q 029415 91 YRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCH- 169 (194)
Q Consensus 91 f~~~L~lvGvGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~gv~v~~~~~~k~~I~i~GiDkq~Vgq~AA~Ir~~~~- 169 (194)
|+++|+++|||| ||++ +|+.|.| +||||||+.+++|+||++++++| |.|+|+|+|||.||||||.||++|+
T Consensus 1 f~k~LelvGVGY--ra~~--~g~~L~l--~LGySH~I~~~iP~~I~v~~~~~--t~i~i~g~dK~~vg~~aa~IR~~r~p 72 (89)
T d2j01h2 1 YSKELLIKGIGY--RARL--VGRALEL--TVGFSHPVVVEPPEGITFEVPEP--TRVRVSGIDKQKVGQVAANIRAIRKP 72 (89)
T ss_dssp CCCEECCCSSSC--EECC--BTTBEEE--ECSSSSCEEECCCTTEEEECSSS--SCEEEEESCSTTTTHHHHHHHTTSCS
T ss_pred CeEEEEEEEEEE--EEEE--eCCEEEE--EEeccccccccCCCCeEEEecCC--CEEEEEeCCHHHHHHHHHHHhccCCC
Confidence 789999999999 8999 6999999 99999999999999999999998 9999999999999999999999996
Q ss_pred --cCCCcee
Q 029415 170 --VKNKDIR 176 (194)
Q Consensus 170 --~Kgkd~R 176 (194)
|||||+|
T Consensus 73 epYKGKGI~ 81 (89)
T d2j01h2 73 SAYHEKGIY 81 (89)
T ss_dssp CSSSSSSCC
T ss_pred CCcCCCcEe
Confidence 9999998
No 4
>d2zjre1 d.141.1.1 (E:83-172) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]}
Probab=99.96 E-value=3.5e-31 Score=191.94 Aligned_cols=78 Identities=23% Similarity=0.327 Sum_probs=75.6
Q ss_pred eEEEEEEEEEEecceeEEccCCCeEEEEcccCceeeEEEecCCCeEEEecCCCCcEEEEEecCHhHHHHHHHHHhcccc-
Q 029415 91 YRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCH- 169 (194)
Q Consensus 91 f~~~L~lvGvGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~gv~v~~~~~~k~~I~i~GiDkq~Vgq~AA~Ir~~~~- 169 (194)
|+++|+++|||| ||++ +|+.|.| +||||||+.+++|+||++++++| |.|+|+|+|||.||||||.||++|+
T Consensus 1 f~k~L~lvGVGY--ra~~--~g~~L~l--~LG~SH~i~~~iP~~I~v~~~~~--t~i~i~g~dKq~vg~~aa~Ir~~r~p 72 (90)
T d2zjre1 1 YTINLELRGVGF--RAKL--TGKALEM--NIGYSHPVIIEPPAGVTFAVPEP--TRIDVSGIDKQLVGQVAANVRKVRKP 72 (90)
T ss_dssp EEEEEECBSTTC--CCCC--BTTBCBC--CSSCSSCCBCCCCTTEEEECSST--TEEEEEESSHHHHHHHHHHHHHHTCC
T ss_pred CEEEEEEEEEEE--EEEe--cCCEEEE--EEeeeeeeeeecCCCeEEEecCC--CEEEEEEcCHHHHHHHHHHHHhhCCC
Confidence 899999999999 8999 7899999 99999999999999999999998 9999999999999999999999996
Q ss_pred --cCCCcee
Q 029415 170 --VKNKDIR 176 (194)
Q Consensus 170 --~Kgkd~R 176 (194)
|||||+|
T Consensus 73 epYKGKGI~ 81 (90)
T d2zjre1 73 DAYHGKGVR 81 (90)
T ss_dssp CTTTCCBCC
T ss_pred CCccCCCEe
Confidence 9999998
No 5
>d2qamg2 d.141.1.1 (G:82-176) Ribosomal protein L6 {Escherichia coli [TaxId: 562]}
Probab=99.96 E-value=3.3e-31 Score=193.70 Aligned_cols=87 Identities=22% Similarity=0.329 Sum_probs=79.6
Q ss_pred eEEEEEEEEEEecceeEEccCCCeEEEEcccCceeeEEEecCCCeEEEecCCCCcEEEEEecCHhHHHHHHHHHhcccc-
Q 029415 91 YRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCH- 169 (194)
Q Consensus 91 f~~~L~lvGvGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~gv~v~~~~~~k~~I~i~GiDkq~Vgq~AA~Ir~~~~- 169 (194)
|+++|+|+|||| ||++ +|+.|.| +||||||+.+++|+||+++++++ |.|+|+|+|||.||||||.||++|+
T Consensus 1 f~k~L~lvGVGY--Ra~~--~g~~L~l--~LGySH~i~~~iP~gI~v~~~~~--t~i~i~g~dKq~vg~~Aa~Ir~~r~p 72 (95)
T d2qamg2 1 FTKKLQLVGVGY--RAAV--KGNVINL--SLGFSHPVDHQLPAGITAECPTQ--TEIVLKGADKQVIGQVAADLRAYRRP 72 (95)
T ss_dssp CCCCCCBCSSSC--CCCC--CTTEECC--CSSSSSCCCEECCSSEECCCSST--TCCCCEESCHHHHHHHHHHHHTTTCC
T ss_pred CeEEEEEEeEEE--EEEE--cCCEEEE--EEecceeceecCCCCcEEEecCC--CEEEEEEcCHHHHHHHHHHHhccCCC
Confidence 788999999999 8999 7999999 99999999999999999999998 9999999999999999999999996
Q ss_pred --cCCCceeeeeceEEEeee
Q 029415 170 --VKNKDIRKFLDGIYVSEK 187 (194)
Q Consensus 170 --~Kgkd~R~f~DGiyv~~k 187 (194)
|||||+| .+|-||--|
T Consensus 73 epYKGKGI~--y~~E~i~~K 90 (95)
T d2qamg2 73 EPYKGKGVR--YADEVVRTK 90 (95)
T ss_dssp CTTSCCSBC--CTTCCCCCC
T ss_pred CCcCCCcEe--ECCeEEEec
Confidence 9999998 445455443
No 6
>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.94 E-value=7.1e-28 Score=173.38 Aligned_cols=87 Identities=48% Similarity=0.912 Sum_probs=78.9
Q ss_pred CceeeeeeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEcccCccCCcEEEEEecCCChhhhhhHHHHHHHH
Q 029415 1 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHV 80 (194)
Q Consensus 1 m~~~~~~~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli 80 (194)
|+++++++||.||+||+|+++++.|+|+||+|+|+++|+++.+.+..... +++.+.++.+.++++++|+|||+||||
T Consensus 1 M~~i~~~~~I~IP~gV~v~i~~~~i~vkGpkG~L~~~~~~~~v~~~~~~~---~~~~i~v~~~~~~k~~~a~~GT~rslI 77 (87)
T d2cqla1 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGK---KKKRLRVDKWWGNRKELATVRTICSHV 77 (87)
T ss_dssp CCCCCCCEEECCCSSCEEEEETTEEEEEETTEEEEEECCSSCCEEEEECS---SSCEEEEECCSSSTHHHHHHHHHHHHH
T ss_pred CcEeecCCcEECCCCCEEEEeCCEEEEEcCCcEEEEEecCCcceEEEeec---cccEEEeecCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999876666653232 368899999999999999999999999
Q ss_pred hhheeeeccc
Q 029415 81 QNLITGVTKG 90 (194)
Q Consensus 81 ~NmI~GVt~G 90 (194)
+|||+|||+|
T Consensus 78 ~Nmi~GVt~G 87 (87)
T d2cqla1 78 QNMIKGVTLG 87 (87)
T ss_dssp HHHHHHHHTS
T ss_pred HhheeeeeCC
Confidence 9999999998
No 7
>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=99.93 E-value=5.7e-26 Score=160.71 Aligned_cols=78 Identities=32% Similarity=0.449 Sum_probs=72.5
Q ss_pred eeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEcccCccCCcEEEEEecCCChhhhhhHHHHHHHHhhheee
Q 029415 7 SETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITG 86 (194)
Q Consensus 7 ~~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli~NmI~G 86 (194)
+.||.||+||+|+++++.|+|+||+|+|+++|++..+.+. .+ ++.+.++++.++++++|||||+||||+|||+|
T Consensus 2 k~~I~IP~~V~v~i~~~~i~vkGp~G~L~~~~~~~~v~i~--~~----~~~i~v~~~~~~k~~~a~~GT~rsli~NmI~G 75 (79)
T d1vqoe1 2 RVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVS--VD----GDTVVIESDEDNAKTMSTIGTFQSHIENMFHG 75 (79)
T ss_dssp EEEEECCSSCEEEEETTEEEEEETTEEEEEECCCTTCEEE--EC----SSEEEEECSCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeECCCCcEEEEeCCEEEEEcCCeEEEEEccCCeEEEE--Ec----CCEEEeccCcccchhhhhHHHHHHHHHHheee
Confidence 5799999999999999999999999999999987567887 42 58999999999999999999999999999999
Q ss_pred eccc
Q 029415 87 VTKG 90 (194)
Q Consensus 87 Vt~G 90 (194)
||+|
T Consensus 76 Vt~G 79 (79)
T d1vqoe1 76 VTEG 79 (79)
T ss_dssp TTTC
T ss_pred eeCC
Confidence 9998
No 8
>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.92 E-value=4.9e-26 Score=159.70 Aligned_cols=75 Identities=29% Similarity=0.551 Sum_probs=70.5
Q ss_pred eEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEcccCccCCcEEEEEecCCChhhhhhHHHHHHHHhhheeeec
Q 029415 9 TMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVT 88 (194)
Q Consensus 9 ~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli~NmI~GVt 88 (194)
||.||+||+|+++++.|+|+||+|+|+++|++ .+.+.++ ++.+.|++++++|+++|||||+||||+|||+|||
T Consensus 1 PI~IP~gV~v~i~~~~i~vkGpkG~L~~~~~~-~v~i~~~------~~~i~v~~~~~~k~~~al~GT~rsli~Nmi~GVt 73 (75)
T d1rl6a1 1 PIEIPAGVTVTVNGNTVTVKGPKGELTRTFHP-DMTITVE------GNVITVTRPSDEKHHRALHGTTRSLLANMVEGVS 73 (75)
T ss_dssp CEECCTTCEEEEETTEEEEEETTEEEEEECCT-TCEEEEE------TTEEEEECSCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCcEEEEECCEEEEEeCCEEEEEeccC-cEEEEEe------CceEEEccCCCcHHHHHHHHHHHHHHHHhceeec
Confidence 89999999999999999999999999999987 7888733 5899999999999999999999999999999999
Q ss_pred cc
Q 029415 89 KG 90 (194)
Q Consensus 89 ~G 90 (194)
+|
T Consensus 74 ~G 75 (75)
T d1rl6a1 74 KG 75 (75)
T ss_dssp TC
T ss_pred CC
Confidence 97
No 9
>d2qamg1 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherichia coli [TaxId: 562]}
Probab=99.92 E-value=3.5e-27 Score=167.85 Aligned_cols=81 Identities=26% Similarity=0.474 Sum_probs=75.7
Q ss_pred eeeeeeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEcccCccCCcEEEEEecCCChhhhhhHHHHHHHHhh
Q 029415 3 TILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQN 82 (194)
Q Consensus 3 ~~~~~~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli~N 82 (194)
+++++.||.||+||+|+++++.|+|+||+|+|+++|++ .+.+. .+ ++.+.+.+++++++++|||||+||||+|
T Consensus 1 SRIgk~pI~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~-~v~i~--~~----~~~i~v~~~~~~k~~~a~~GT~rsli~N 73 (81)
T d2qamg1 1 SRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLND-AVEVK--HA----DNTLTFGPRDGYADGWAQAGTARALLNS 73 (81)
T ss_dssp CGGGGCCCCCCSSCCCCCBTTEECCCCSSSCCCCEECC-SEEEE--CS----SSSCEEEECSSCTTTTHHHHHHHHHHHH
T ss_pred CCcccCCcccCCCCEEEEECCEEEEEeCCEEEEEEecC-CcEEE--Ec----CCEEEEEeCCCChhHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999988 88888 53 5889999999999999999999999999
Q ss_pred heeeeccc
Q 029415 83 LITGVTKG 90 (194)
Q Consensus 83 mI~GVt~G 90 (194)
||+|||+|
T Consensus 74 mI~GVt~G 81 (81)
T d2qamg1 74 MVIGVTEG 81 (81)
T ss_dssp HHHHTTTC
T ss_pred heeeeeCC
Confidence 99999998
No 10
>d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]}
Probab=99.91 E-value=8.2e-27 Score=164.78 Aligned_cols=78 Identities=24% Similarity=0.466 Sum_probs=72.1
Q ss_pred eeeeEEcCCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEcccCccCCcEEEEEecCCChhhhhhHHHHHHHHhhhee
Q 029415 6 SSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLIT 85 (194)
Q Consensus 6 ~~~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli~NmI~ 85 (194)
|++||.||+||+|+++++.|+|+||+|+|+++|++ .+.+. .+ ++.+.+.+++++++++|||||+||||+|||+
T Consensus 1 Gk~pI~IP~~V~v~i~~~~v~vkGpkG~l~~~~~~-~v~i~--~~----~~~i~v~~~~~~k~~~a~~GT~rsli~Nmi~ 73 (78)
T d2zjre2 1 GKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNT-ELTVR--QD----GDQLLVERPSDAQKHRALHGLTRTLVANAVK 73 (78)
T ss_dssp CCCCBCCCTTCCEECCTTCCEECCSSCCCCCCCCS-SSCCB--CC----SSSBBCCCSSCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEcCCCCEEEEECCEEEEEcCCEEEEEEecc-cEEEE--Ec----CCEEEEEcCCCCHHHHHHHHHHHHHHHHhee
Confidence 57899999999999999999999999999999988 77776 42 5789999999999999999999999999999
Q ss_pred eeccc
Q 029415 86 GVTKG 90 (194)
Q Consensus 86 GVt~G 90 (194)
|||+|
T Consensus 74 GVt~G 78 (78)
T d2zjre2 74 GVSDG 78 (78)
T ss_dssp HHHHC
T ss_pred eecCC
Confidence 99987
No 11
>d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]}
Probab=99.87 E-value=3.4e-24 Score=148.63 Aligned_cols=71 Identities=20% Similarity=0.427 Sum_probs=65.8
Q ss_pred CCCcEEEEeCcEEEEEcCCcEEEEEecCCcEEEEEcccCccCCcEEEEEecCCChhhhhhHHHHHHHHhhheeeeccc
Q 029415 13 PEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKG 90 (194)
Q Consensus 13 P~~V~v~i~~~~v~vkGp~G~l~~~~~~~~i~i~~~~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli~NmI~GVt~G 90 (194)
|+||+|+++++.|+|+||+|+|+++|++ .+.+. .+ ++.+.+.+++++++++|||||+||||+|||+|||+|
T Consensus 1 P~gV~v~i~~~~v~vkGpkG~l~~~~~~-~i~i~--~~----~~~i~v~~~~~~k~~~a~~GT~rsli~NmI~GVt~G 71 (71)
T d2j01h1 1 PKGVSVEVAPGRVKVKGPKGELEVPVSP-EMRVV--VE----EGVVRVERPSDERRHKSLHGLTRTLIANAVKGVSEG 71 (71)
T ss_dssp CTTCEEEECSSCEEEECSSCCEECCCCS-SSCCC--CC----SSSCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCceEEEEECCEEEEECCCEEEEEEccC-ceEEE--Ee----CCEEEEEecCCChHHHHHHHHHHHHHHHhheeecCC
Confidence 9999999999999999999999999998 67666 42 578999999999999999999999999999999997
No 12
>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=81.38 E-value=0.69 Score=30.61 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=21.8
Q ss_pred EEEecCCCeEEEecCCCCcEEEEEecCHh
Q 029415 127 RRVEMLDGVTVLRSDKVKDELILDGNDIE 155 (194)
Q Consensus 127 i~~~iP~gv~v~~~~~~k~~I~i~GiDkq 155 (194)
..+.||+||+|++.+ +.|.++|.--+
T Consensus 8 ~~I~IP~gV~v~i~~---~~i~vkGpkG~ 33 (87)
T d2cqla1 8 QTVDIPENVDITLKG---RTVIVKGPRGT 33 (87)
T ss_dssp EEECCCSSCEEEEET---TEEEEEETTEE
T ss_pred CcEECCCCCEEEEeC---CEEEEEcCCcE
Confidence 457899999999988 68999998654
No 13
>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=81.33 E-value=0.66 Score=30.04 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=17.8
Q ss_pred EecCCCeEEEecCCCCcEEEEEecC
Q 029415 129 VEMLDGVTVLRSDKVKDELILDGND 153 (194)
Q Consensus 129 ~~iP~gv~v~~~~~~k~~I~i~GiD 153 (194)
+.||+||+|++.+ +.|+++|.-
T Consensus 2 I~IP~gV~v~i~~---~~i~vkGpk 23 (75)
T d1rl6a1 2 IEIPAGVTVTVNG---NTVTVKGPK 23 (75)
T ss_dssp EECCTTCEEEEET---TEEEEEETT
T ss_pred cCCCCCcEEEEEC---CEEEEEeCC
Confidence 4789999999876 688888864
No 14
>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=78.46 E-value=1.1 Score=30.49 Aligned_cols=14 Identities=14% Similarity=0.342 Sum_probs=8.9
Q ss_pred hhHHHHHHHHhhhe
Q 029415 71 AAIRTALSHVQNLI 84 (194)
Q Consensus 71 a~~gt~rsli~NmI 84 (194)
...|.++|.|+++-
T Consensus 60 E~V~qtAA~Ieq~t 73 (93)
T d1vqoe2 60 EAVGQTAADIEQLT 73 (93)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhh
Confidence 34666777777654
No 15
>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=78.12 E-value=1 Score=29.23 Aligned_cols=25 Identities=12% Similarity=0.322 Sum_probs=21.0
Q ss_pred EEecCCCeEEEecCCCCcEEEEEecCHh
Q 029415 128 RVEMLDGVTVLRSDKVKDELILDGNDIE 155 (194)
Q Consensus 128 ~~~iP~gv~v~~~~~~k~~I~i~GiDkq 155 (194)
.+.||+||+|++.+ +.|+++|.--+
T Consensus 4 ~I~IP~~V~v~i~~---~~i~vkGp~G~ 28 (79)
T d1vqoe1 4 ELEIPEDVDAEQDH---LDITVEGDNGS 28 (79)
T ss_dssp EEECCSSCEEEEET---TEEEEEETTEE
T ss_pred eeECCCCcEEEEeC---CEEEEEcCCeE
Confidence 57899999999987 78999998654
No 16
>d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]}
Probab=62.92 E-value=0.81 Score=29.73 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=19.3
Q ss_pred EecCCCeEEEecCCCCcEEEEEecCHh
Q 029415 129 VEMLDGVTVLRSDKVKDELILDGNDIE 155 (194)
Q Consensus 129 ~~iP~gv~v~~~~~~k~~I~i~GiDkq 155 (194)
+.||+||+|++.+ +.++++|.-=+
T Consensus 5 I~IP~~V~v~i~~---~~v~vkGpkG~ 28 (78)
T d2zjre2 5 IAVPSGVTVNAQD---GVFKVKGPKGE 28 (78)
T ss_dssp BCCCTTCCEECCT---TCCEECCSSCC
T ss_pred eEcCCCCEEEEEC---CEEEEEcCCEE
Confidence 4699999999987 67888887533
No 17
>d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]}
Probab=49.33 E-value=5.1 Score=25.10 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=16.8
Q ss_pred CCCeEEEecCCCCcEEEEEecCHh
Q 029415 132 LDGVTVLRSDKVKDELILDGNDIE 155 (194)
Q Consensus 132 P~gv~v~~~~~~k~~I~i~GiDkq 155 (194)
|+||+|++.+ ..|+++|.-=+
T Consensus 1 P~gV~v~i~~---~~v~vkGpkG~ 21 (71)
T d2j01h1 1 PKGVSVEVAP---GRVKVKGPKGE 21 (71)
T ss_dssp CTTCEEEECS---SCEEEECSSCC
T ss_pred CCceEEEEEC---CEEEEECCCEE
Confidence 8999999976 67889887533
No 18
>d1rl6a2 d.141.1.1 (A:82-170) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=47.73 E-value=6.8 Score=25.99 Aligned_cols=11 Identities=27% Similarity=0.715 Sum_probs=5.9
Q ss_pred EEcCCCcEEEE
Q 029415 10 MEIPEGVKVKI 20 (194)
Q Consensus 10 I~IP~~V~v~i 20 (194)
+++|++|++++
T Consensus 33 ~~iP~~i~v~~ 43 (89)
T d1rl6a2 33 IEPEEGLEIEV 43 (89)
T ss_dssp ECCCTTEEEEE
T ss_pred EeCCCCcEEEe
Confidence 34556665554
No 19
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=43.12 E-value=30 Score=22.63 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=31.9
Q ss_pred EEEEEEecceeEEccCCCeEEEEcccCceeeEEEecC----CCeEEEecCCCCcEEEEEec
Q 029415 96 RFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEML----DGVTVLRSDKVKDELILDGN 152 (194)
Q Consensus 96 ~lvGvGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP----~gv~v~~~~~~k~~I~i~Gi 152 (194)
++.|.||| -+.+.+.++.+.+ .+.+| +++.+++.+ +.++|+|-
T Consensus 4 ~~~~~~~~-pvdi~e~~~~~~i----------~~~lPG~~~edi~v~v~~---~~l~I~~~ 50 (115)
T d1shsa_ 4 QISGKGFM-PISIIEGDQHIKV----------IAWLPGVNKEDIILNAVG---DTLEIRAK 50 (115)
T ss_dssp EEEEESCC-CEEEEECSSEEEE----------EEECTTCCGGGEEEEEET---TEEEEEEE
T ss_pred ccCCCCcC-ceEEEEcCCEEEE----------EEECCCCCHHHEEEEEEC---CEEEEEEE
Confidence 57889987 5777556666666 36676 589999987 68999884
No 20
>d1pbya3 b.1.18.14 (A:274-351) Quinohemoprotein amine dehydrogenase A chain, domains 4 and 5 {Paracoccus denitrificans [TaxId: 266]}
Probab=38.32 E-value=25 Score=22.62 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=26.6
Q ss_pred cceEEEEEEEEEEecceeEEccCCCeEEEEcccCceeeEEEecCCCeEEEecCCCCcEEEEEe
Q 029415 89 KGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDG 151 (194)
Q Consensus 89 ~Gf~~~L~lvGvGypira~~~~~g~~l~l~n~LG~Sh~i~~~iP~gv~v~~~~~~k~~I~i~G 151 (194)
.|=+-+|.|+|+|- .| . ..+|+|+++++.++.+++++++-
T Consensus 15 aGe~~~l~ivG~gL--------~g-~--------------v~lg~GV~v~v~s~s~~~vvvkv 54 (78)
T d1pbya3 15 IGEETQLRVAGTGL--------GS-D--------------LTLPEGVAGSVESAGNGVTVLKL 54 (78)
T ss_dssp TTCCEEEEEEEESC--------CS-C--------------EECCTTEEEEEEECCTTEEEEEE
T ss_pred CCCccEEEEEeccc--------cc-c--------------cccCCCeEEEEEecCCCEEEEEE
Confidence 35566788888777 22 1 34579999988665557888753
No 21
>d2qalj1 d.58.15.1 (J:5-102) Ribosomal protein S10 {Escherichia coli [TaxId: 562]}
Probab=34.44 E-value=16 Score=24.08 Aligned_cols=31 Identities=16% Similarity=0.206 Sum_probs=25.8
Q ss_pred cEEEEEecCHhHHHHHHHHHhcccccCCCce
Q 029415 145 DELILDGNDIELVSRSAALINQKCHVKNKDI 175 (194)
Q Consensus 145 ~~I~i~GiDkq~Vgq~AA~Ir~~~~~Kgkd~ 175 (194)
=+|.|+|-|.+.|-++|+.|....+..|-.+
T Consensus 2 irI~L~s~d~~~Ld~~~~~i~~~a~~~g~~v 32 (98)
T d2qalj1 2 IRIRLKAFDHRLIDQATAEIVETAKRTGAQV 32 (98)
T ss_dssp BEECEEESSHHHHHHHHHHHHHHHTTSSCCC
T ss_pred EEEEEEeecHHHHHHHHHHHHHHHHHcCCeE
Confidence 3688999999999999999999877655433
No 22
>d2uubj1 d.58.15.1 (J:3-100) Ribosomal protein S10 {Thermus thermophilus [TaxId: 274]}
Probab=33.77 E-value=17 Score=23.88 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=26.0
Q ss_pred cEEEEEecCHhHHHHHHHHHhcccccCCCce
Q 029415 145 DELILDGNDIELVSRSAALINQKCHVKNKDI 175 (194)
Q Consensus 145 ~~I~i~GiDkq~Vgq~AA~Ir~~~~~Kgkd~ 175 (194)
=+|.|+|-|.+.|-++|..|...++..|-.+
T Consensus 2 irI~l~s~d~~~Ld~~~~~i~~~a~~~g~~v 32 (98)
T d2uubj1 2 IRIKLRGFDHKTLDASAQKIVEAARRSGAQV 32 (98)
T ss_dssp CEEEEEESCHHHHHHHHHHHTHHHHTTSSCC
T ss_pred EEEEEEEecHHHHHHHHHHHHHHHHHcCCee
Confidence 3689999999999999999999887655443
No 23
>d1ttea1 a.5.2.1 (A:161-215) Ubiquitin-protein ligase ubc1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.46 E-value=9.4 Score=23.17 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=19.4
Q ss_pred EEEecCHhHHHHHHHH-------Hhcccc--cCCCc
Q 029415 148 ILDGNDIELVSRSAAL-------INQKCH--VKNKD 174 (194)
Q Consensus 148 ~i~GiDkq~Vgq~AA~-------Ir~~~~--~Kgkd 174 (194)
-+.|+|++.|.||.+. |.-+|+ ||+.+
T Consensus 4 al~Gid~~~V~~f~~mGF~rdKvI~VLrrlgik~~~ 39 (55)
T d1ttea1 4 DLYGIDHDLIDEFESQGFEKDKIVEVLRRLGVKSLD 39 (55)
T ss_dssp SCCCCSHHHHHHHHHHTCCHHHHHHHHHHSCCSSCC
T ss_pred HHhCCCHHHHHHHHHcCCCchhHHHHHHHhCcCCCC
Confidence 3679999999999885 444454 56544
No 24
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]}
Probab=23.04 E-value=47 Score=21.37 Aligned_cols=34 Identities=9% Similarity=0.092 Sum_probs=28.7
Q ss_pred CeEEEecCCCCcEEEEEecCHhHHHHHHHHHhcccc
Q 029415 134 GVTVLRSDKVKDELILDGNDIELVSRSAALINQKCH 169 (194)
Q Consensus 134 gv~v~~~~~~k~~I~i~GiDkq~Vgq~AA~Ir~~~~ 169 (194)
|.++.+.++ ..+.|+|.|.+.+....+.|+..+.
T Consensus 31 ~~~I~I~d~--G~V~I~g~~~~~~~~A~~~I~~I~~ 64 (87)
T d2z0sa2 31 ECKIFVARN--GRIHLECPNEDLEAIAVMAIKIIDE 64 (87)
T ss_dssp CCEEEEETT--TEEEEECSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEECCC--cEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 667777765 7999999999999999999988754
No 25
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.46 E-value=71 Score=19.71 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=26.7
Q ss_pred CeEEEecCCCCcEEEEEecCHhHHHHHHHHHhccc
Q 029415 134 GVTVLRSDKVKDELILDGNDIELVSRSAALINQKC 168 (194)
Q Consensus 134 gv~v~~~~~~k~~I~i~GiDkq~Vgq~AA~Ir~~~ 168 (194)
|+++.+.+.++..+.|.|.|.+.|..-...|+...
T Consensus 38 Ga~i~i~~~~~g~v~I~g~~~eav~~A~~~Ie~~~ 72 (78)
T d2cpqa1 38 GVTAIELDEDTGTFRIYGESADAVKKARGFLEFVE 72 (78)
T ss_dssp TEEEEEEETTTTEEEEEESSHHHHHHHHHHHSCCC
T ss_pred CcEEEEecCCCceEEEEECCHHHHHHHHHHHHHhh
Confidence 66666654333589999999999999888887654
Done!